Multiple sequence alignment - TraesCS2A01G315100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G315100 chr2A 100.000 4806 0 0 987 5792 540451927 540456732 0.000000e+00 8876.0
1 TraesCS2A01G315100 chr2A 100.000 661 0 0 1 661 540450941 540451601 0.000000e+00 1221.0
2 TraesCS2A01G315100 chr2D 95.264 4603 143 32 987 5522 403209500 403214094 0.000000e+00 7223.0
3 TraesCS2A01G315100 chr2D 88.988 672 32 19 1 661 403208819 403209459 0.000000e+00 793.0
4 TraesCS2A01G315100 chr2B 92.780 4640 169 57 987 5551 477328280 477332828 0.000000e+00 6560.0
5 TraesCS2A01G315100 chr2B 89.943 527 20 19 143 661 477327734 477328235 0.000000e+00 649.0
6 TraesCS2A01G315100 chr2B 98.462 65 1 0 48 112 477327620 477327684 1.320000e-21 115.0
7 TraesCS2A01G315100 chr5D 76.339 224 34 15 3383 3595 7502743 7502528 1.030000e-17 102.0
8 TraesCS2A01G315100 chr5D 86.885 61 4 2 5407 5467 478229133 478229077 1.350000e-06 65.8
9 TraesCS2A01G315100 chr5A 76.339 224 34 15 3383 3595 4957786 4957571 1.030000e-17 102.0
10 TraesCS2A01G315100 chr5A 100.000 39 0 0 5404 5442 368774927 368774889 8.050000e-09 73.1
11 TraesCS2A01G315100 chr1D 100.000 37 0 0 5406 5442 420207643 420207607 1.040000e-07 69.4
12 TraesCS2A01G315100 chr1D 95.349 43 2 0 5404 5446 464288678 464288636 1.040000e-07 69.4
13 TraesCS2A01G315100 chr3A 92.500 40 3 0 5408 5447 698836071 698836032 2.250000e-04 58.4
14 TraesCS2A01G315100 chr1A 90.698 43 4 0 5408 5450 580570940 580570898 2.250000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G315100 chr2A 540450941 540456732 5791 False 5048.500000 8876 100.000000 1 5792 2 chr2A.!!$F1 5791
1 TraesCS2A01G315100 chr2D 403208819 403214094 5275 False 4008.000000 7223 92.126000 1 5522 2 chr2D.!!$F1 5521
2 TraesCS2A01G315100 chr2B 477327620 477332828 5208 False 2441.333333 6560 93.728333 48 5551 3 chr2B.!!$F1 5503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 547 0.972983 TTCGCTCTCCTCCCTCCAAG 60.973 60.000 0.00 0.0 0.00 3.61 F
1582 1680 0.400213 TCCACATGGAAACCGAGCTT 59.600 50.000 0.00 0.0 42.18 3.74 F
1719 1838 0.459489 GAGCTGAGTGGATCTTCGCT 59.541 55.000 0.00 2.8 35.66 4.93 F
2274 2393 1.003233 AGGCAAGTCGCTTTCCCTC 60.003 57.895 5.07 0.0 41.91 4.30 F
2277 2396 1.021920 GCAAGTCGCTTTCCCTCCTC 61.022 60.000 0.00 0.0 37.77 3.71 F
4001 4136 0.456221 CTCCTATCGACCGTTGCAGT 59.544 55.000 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2335 2459 0.035458 GGATGGATGGATCGGTGGAC 59.965 60.000 0.00 0.0 0.00 4.02 R
2444 2568 0.318445 CGATCGGGTGGTTCGGATAC 60.318 60.000 7.38 0.0 34.88 2.24 R
3651 3782 0.179150 ACGATCGCTCAGCTCAGTTC 60.179 55.000 16.60 0.0 0.00 3.01 R
3825 3956 1.445582 GATGACGCCGTCTCCGTTT 60.446 57.895 19.12 0.0 39.30 3.60 R
4023 4161 2.163818 TACCTCTGCGACAAACCAAG 57.836 50.000 0.00 0.0 0.00 3.61 R
5743 5907 0.032130 TCGCGGCAATGATCTAGACC 59.968 55.000 6.13 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.661056 TCTCTGGACTAACATAACACTGG 57.339 43.478 0.00 0.00 0.00 4.00
122 156 7.863375 CCTACAAACACCAATTAAAACGATGAA 59.137 33.333 0.00 0.00 0.00 2.57
124 158 7.901002 ACAAACACCAATTAAAACGATGAAAC 58.099 30.769 0.00 0.00 0.00 2.78
134 185 3.508840 GATGAAACAGGGCGGCGG 61.509 66.667 9.78 0.00 0.00 6.13
190 241 1.342975 CCCCCTGGGTTTTATTGAGGG 60.343 57.143 12.71 0.00 42.85 4.30
191 242 1.361197 CCCCTGGGTTTTATTGAGGGT 59.639 52.381 12.71 0.00 41.79 4.34
220 271 1.068541 GGGCTTTGTTGTCCGAATCAC 60.069 52.381 0.00 0.00 0.00 3.06
221 272 1.068541 GGCTTTGTTGTCCGAATCACC 60.069 52.381 0.00 0.00 0.00 4.02
229 280 1.021390 GTCCGAATCACCAGCCACAG 61.021 60.000 0.00 0.00 0.00 3.66
343 395 1.062587 CGCCCTTTTCTATTCAGCGTG 59.937 52.381 0.00 0.00 37.47 5.34
344 396 1.202188 GCCCTTTTCTATTCAGCGTGC 60.202 52.381 0.00 0.00 0.00 5.34
345 397 1.062587 CCCTTTTCTATTCAGCGTGCG 59.937 52.381 0.00 0.00 0.00 5.34
346 398 1.529826 CCTTTTCTATTCAGCGTGCGC 60.530 52.381 8.67 8.67 42.33 6.09
419 471 2.359975 CGTGGTTTCCCAGCCCTC 60.360 66.667 0.00 0.00 42.94 4.30
420 472 2.359975 GTGGTTTCCCAGCCCTCG 60.360 66.667 0.00 0.00 42.94 4.63
421 473 4.344865 TGGTTTCCCAGCCCTCGC 62.345 66.667 0.00 0.00 35.17 5.03
422 474 4.344865 GGTTTCCCAGCCCTCGCA 62.345 66.667 0.00 0.00 37.52 5.10
483 545 1.380515 CTTCGCTCTCCTCCCTCCA 60.381 63.158 0.00 0.00 0.00 3.86
485 547 0.972983 TTCGCTCTCCTCCCTCCAAG 60.973 60.000 0.00 0.00 0.00 3.61
486 548 2.907236 GCTCTCCTCCCTCCAAGC 59.093 66.667 0.00 0.00 0.00 4.01
492 554 3.474570 CTCCCTCCAAGCCCCGAG 61.475 72.222 0.00 0.00 0.00 4.63
653 720 1.345415 CCAGCTGCTTTGACCCATTTT 59.655 47.619 8.66 0.00 0.00 1.82
654 721 2.611224 CCAGCTGCTTTGACCCATTTTC 60.611 50.000 8.66 0.00 0.00 2.29
655 722 1.270550 AGCTGCTTTGACCCATTTTCG 59.729 47.619 0.00 0.00 0.00 3.46
656 723 1.000274 GCTGCTTTGACCCATTTTCGT 60.000 47.619 0.00 0.00 0.00 3.85
657 724 2.664916 CTGCTTTGACCCATTTTCGTG 58.335 47.619 0.00 0.00 0.00 4.35
658 725 2.028130 TGCTTTGACCCATTTTCGTGT 58.972 42.857 0.00 0.00 0.00 4.49
660 727 2.607038 GCTTTGACCCATTTTCGTGTCC 60.607 50.000 0.00 0.00 0.00 4.02
1374 1450 1.216444 GCTCATCAGCACGGAGACA 59.784 57.895 0.00 0.00 46.06 3.41
1389 1465 1.623811 GAGACAGACCCAAGTAAGCCA 59.376 52.381 0.00 0.00 0.00 4.75
1453 1547 3.620374 TGCATCTTTGAATCGAGCTTCTC 59.380 43.478 0.00 0.00 0.00 2.87
1581 1679 2.066340 TCCACATGGAAACCGAGCT 58.934 52.632 0.00 0.00 42.18 4.09
1582 1680 0.400213 TCCACATGGAAACCGAGCTT 59.600 50.000 0.00 0.00 42.18 3.74
1635 1754 9.546428 TGATTTGATTTTTCTTCTTTTCTTCCC 57.454 29.630 0.00 0.00 0.00 3.97
1654 1773 1.009903 CCGCATGTGGCATGTTTGTG 61.010 55.000 13.39 0.00 45.17 3.33
1688 1807 2.216046 TCAGAGCGAATCATTGGATGC 58.784 47.619 0.00 0.00 32.92 3.91
1719 1838 0.459489 GAGCTGAGTGGATCTTCGCT 59.541 55.000 0.00 2.80 35.66 4.93
1772 1891 3.393800 CCAAGAAGAGCAAGAAGTCGAA 58.606 45.455 0.00 0.00 0.00 3.71
2018 2137 1.512926 CGGGTCTTCTTCACCAACAG 58.487 55.000 0.00 0.00 35.35 3.16
2121 2240 2.167219 CGTGCGCAAGATCACCGAT 61.167 57.895 19.03 0.00 43.02 4.18
2274 2393 1.003233 AGGCAAGTCGCTTTCCCTC 60.003 57.895 5.07 0.00 41.91 4.30
2277 2396 1.021920 GCAAGTCGCTTTCCCTCCTC 61.022 60.000 0.00 0.00 37.77 3.71
2373 2497 6.950041 TCCATCCATCCATCCAATAAATTCTC 59.050 38.462 0.00 0.00 0.00 2.87
2569 2693 2.954868 CCCATCTACGTGTCGCGC 60.955 66.667 0.00 0.00 46.11 6.86
2812 2936 2.930562 AACAGCGAGGGCCTCCTT 60.931 61.111 27.36 13.11 45.05 3.36
2852 2976 4.472833 ACATCATCAAGAGTAAGAAGCCCT 59.527 41.667 0.00 0.00 0.00 5.19
2863 2989 1.521681 GAAGCCCTCCACCGAATCG 60.522 63.158 0.00 0.00 0.00 3.34
2943 3069 2.266554 CGCTGTTTTGTTTTCTTGGCA 58.733 42.857 0.00 0.00 0.00 4.92
3167 3293 1.587043 GGGCCTGAGGAAAGCGTTTC 61.587 60.000 0.65 0.00 38.94 2.78
3213 3343 3.909086 GAGCAAGCTTGACCCGGCT 62.909 63.158 30.39 18.15 40.85 5.52
3612 3742 2.688446 CTGGTACGCCTCTCTGAACATA 59.312 50.000 0.00 0.00 35.27 2.29
3628 3758 5.123227 TGAACATACCGATTCAGAATTCCC 58.877 41.667 0.65 0.00 31.29 3.97
3629 3759 4.771114 ACATACCGATTCAGAATTCCCA 57.229 40.909 0.65 0.00 0.00 4.37
3630 3760 4.451900 ACATACCGATTCAGAATTCCCAC 58.548 43.478 0.65 0.00 0.00 4.61
3679 3810 2.358247 AGCGATCGTTTTGGCGGT 60.358 55.556 17.81 0.00 0.00 5.68
3680 3811 2.202298 GCGATCGTTTTGGCGGTG 60.202 61.111 17.81 0.00 0.00 4.94
3825 3956 2.340078 GCGCGGCAGATCCTCATA 59.660 61.111 8.83 0.00 0.00 2.15
3955 4086 1.409427 CCGACCTCATCAGAAGGTACC 59.591 57.143 2.73 2.73 35.85 3.34
3987 4122 2.573462 ACTTCAAATGGCTCTGCTCCTA 59.427 45.455 0.00 0.00 0.00 2.94
4000 4135 0.872021 GCTCCTATCGACCGTTGCAG 60.872 60.000 0.00 0.00 0.00 4.41
4001 4136 0.456221 CTCCTATCGACCGTTGCAGT 59.544 55.000 0.00 0.00 0.00 4.40
4002 4137 1.674441 CTCCTATCGACCGTTGCAGTA 59.326 52.381 0.00 0.00 0.00 2.74
4004 4139 1.478137 CTATCGACCGTTGCAGTAGC 58.522 55.000 0.00 0.00 42.57 3.58
4314 4452 4.803426 CTCGCGTCCCTGCTCACC 62.803 72.222 5.77 0.00 0.00 4.02
4536 4674 1.868251 GACGGTCATCGACACGCTC 60.868 63.158 2.62 0.00 42.43 5.03
4882 5031 6.017440 CGTCTCAGGGAAAGTAGATAAGAGAG 60.017 46.154 0.00 0.00 31.07 3.20
5064 5213 2.542020 TCCGACAGATGCTTGAAACA 57.458 45.000 0.00 0.00 0.00 2.83
5121 5281 8.507249 ACTAGCTCAAAACTTGAACATCATAAC 58.493 33.333 0.00 0.00 39.58 1.89
5164 5324 8.451908 AGTAATACCTCAAAATAATCCAGTGC 57.548 34.615 0.00 0.00 0.00 4.40
5175 5335 5.999205 ATAATCCAGTGCCAATTTTGTCA 57.001 34.783 0.00 0.00 0.00 3.58
5201 5361 4.335594 GCTTACTTGGTTGGCCTACATTAG 59.664 45.833 19.19 13.74 35.27 1.73
5227 5387 9.092876 GAAAACAACATCACAATGGAAACTAAA 57.907 29.630 0.00 0.00 37.19 1.85
5233 5393 7.083858 ACATCACAATGGAAACTAAATCAACG 58.916 34.615 0.00 0.00 37.19 4.10
5237 5397 8.356657 TCACAATGGAAACTAAATCAACGAAAT 58.643 29.630 0.00 0.00 0.00 2.17
5345 5506 5.905480 CTTTGAACAAAGGCATACCAAAC 57.095 39.130 16.57 0.00 42.96 2.93
5353 5514 4.701956 AAGGCATACCAAACATCGAAAG 57.298 40.909 0.00 0.00 39.06 2.62
5355 5516 2.099098 GGCATACCAAACATCGAAAGGG 59.901 50.000 0.00 0.00 35.26 3.95
5372 5533 3.127425 AGGGAAAACTGTGTAGACTGC 57.873 47.619 0.00 0.00 0.00 4.40
5375 5536 2.808543 GGAAAACTGTGTAGACTGCCAG 59.191 50.000 0.00 0.00 0.00 4.85
5389 5550 2.817844 ACTGCCAGTAAAAACCGGAATC 59.182 45.455 9.46 0.00 0.00 2.52
5400 5561 5.945466 AAAACCGGAATCGTTTAGCTAAA 57.055 34.783 14.96 14.96 33.95 1.85
5406 5567 7.215085 ACCGGAATCGTTTAGCTAAATATCTT 58.785 34.615 21.28 12.53 33.95 2.40
5450 5611 7.985634 CTTTATAAATAAAGCACCAACGCAT 57.014 32.000 9.01 0.00 41.69 4.73
5536 5700 8.487313 AAAAACATGACCTAAAAGTGGAAAAC 57.513 30.769 0.00 0.00 0.00 2.43
5541 5705 6.591750 TGACCTAAAAGTGGAAAACAAACA 57.408 33.333 0.00 0.00 0.00 2.83
5551 5715 4.629200 GTGGAAAACAAACAATGCAAGACA 59.371 37.500 0.00 0.00 0.00 3.41
5552 5716 4.629200 TGGAAAACAAACAATGCAAGACAC 59.371 37.500 0.00 0.00 0.00 3.67
5553 5717 4.869861 GGAAAACAAACAATGCAAGACACT 59.130 37.500 0.00 0.00 0.00 3.55
5554 5718 6.039616 GGAAAACAAACAATGCAAGACACTA 58.960 36.000 0.00 0.00 0.00 2.74
5555 5719 6.019881 GGAAAACAAACAATGCAAGACACTAC 60.020 38.462 0.00 0.00 0.00 2.73
5556 5720 5.835113 AACAAACAATGCAAGACACTACT 57.165 34.783 0.00 0.00 0.00 2.57
5557 5721 6.935741 AACAAACAATGCAAGACACTACTA 57.064 33.333 0.00 0.00 0.00 1.82
5558 5722 6.935741 ACAAACAATGCAAGACACTACTAA 57.064 33.333 0.00 0.00 0.00 2.24
5559 5723 6.959361 ACAAACAATGCAAGACACTACTAAG 58.041 36.000 0.00 0.00 0.00 2.18
5560 5724 6.017109 ACAAACAATGCAAGACACTACTAAGG 60.017 38.462 0.00 0.00 0.00 2.69
5561 5725 4.579869 ACAATGCAAGACACTACTAAGGG 58.420 43.478 0.00 0.00 0.00 3.95
5562 5726 3.914426 ATGCAAGACACTACTAAGGGG 57.086 47.619 0.00 0.00 0.00 4.79
5563 5727 1.278127 TGCAAGACACTACTAAGGGGC 59.722 52.381 0.00 0.00 32.33 5.80
5564 5728 1.739371 GCAAGACACTACTAAGGGGCG 60.739 57.143 0.00 0.00 40.19 6.13
5565 5729 0.535797 AAGACACTACTAAGGGGCGC 59.464 55.000 0.00 0.00 40.19 6.53
5566 5730 1.143401 GACACTACTAAGGGGCGCC 59.857 63.158 21.18 21.18 0.00 6.53
5567 5731 1.610554 GACACTACTAAGGGGCGCCA 61.611 60.000 30.85 6.35 0.00 5.69
5568 5732 1.196104 ACACTACTAAGGGGCGCCAA 61.196 55.000 30.85 9.42 0.00 4.52
5569 5733 0.462047 CACTACTAAGGGGCGCCAAG 60.462 60.000 30.85 20.86 0.00 3.61
5570 5734 0.616679 ACTACTAAGGGGCGCCAAGA 60.617 55.000 30.85 9.20 0.00 3.02
5571 5735 0.105039 CTACTAAGGGGCGCCAAGAG 59.895 60.000 30.85 20.74 0.00 2.85
5572 5736 0.616679 TACTAAGGGGCGCCAAGAGT 60.617 55.000 30.85 25.06 0.00 3.24
5573 5737 1.299976 CTAAGGGGCGCCAAGAGTT 59.700 57.895 30.85 15.31 0.00 3.01
5574 5738 1.002624 TAAGGGGCGCCAAGAGTTG 60.003 57.895 30.85 0.00 0.00 3.16
5575 5739 1.485294 TAAGGGGCGCCAAGAGTTGA 61.485 55.000 30.85 0.94 0.00 3.18
5576 5740 2.044946 GGGGCGCCAAGAGTTGAT 60.045 61.111 30.85 0.00 0.00 2.57
5577 5741 2.409870 GGGGCGCCAAGAGTTGATG 61.410 63.158 30.85 0.00 0.00 3.07
5578 5742 2.409870 GGGCGCCAAGAGTTGATGG 61.410 63.158 30.85 0.00 39.80 3.51
5579 5743 2.409870 GGCGCCAAGAGTTGATGGG 61.410 63.158 24.80 0.00 37.19 4.00
5580 5744 1.675641 GCGCCAAGAGTTGATGGGT 60.676 57.895 0.00 0.00 37.19 4.51
5581 5745 1.926511 GCGCCAAGAGTTGATGGGTG 61.927 60.000 0.00 0.00 37.19 4.61
5582 5746 0.321564 CGCCAAGAGTTGATGGGTGA 60.322 55.000 0.00 0.00 37.19 4.02
5583 5747 1.168714 GCCAAGAGTTGATGGGTGAC 58.831 55.000 0.00 0.00 37.19 3.67
5584 5748 1.442769 CCAAGAGTTGATGGGTGACG 58.557 55.000 0.00 0.00 32.87 4.35
5585 5749 1.001974 CCAAGAGTTGATGGGTGACGA 59.998 52.381 0.00 0.00 32.87 4.20
5586 5750 2.549992 CCAAGAGTTGATGGGTGACGAA 60.550 50.000 0.00 0.00 32.87 3.85
5587 5751 2.457366 AGAGTTGATGGGTGACGAAC 57.543 50.000 0.00 0.00 0.00 3.95
5588 5752 1.971357 AGAGTTGATGGGTGACGAACT 59.029 47.619 0.00 0.00 0.00 3.01
5589 5753 2.069273 GAGTTGATGGGTGACGAACTG 58.931 52.381 0.00 0.00 0.00 3.16
5590 5754 0.517316 GTTGATGGGTGACGAACTGC 59.483 55.000 0.00 0.00 0.00 4.40
5591 5755 0.107643 TTGATGGGTGACGAACTGCA 59.892 50.000 0.00 0.00 0.00 4.41
5592 5756 0.320683 TGATGGGTGACGAACTGCAG 60.321 55.000 13.48 13.48 0.00 4.41
5593 5757 0.037326 GATGGGTGACGAACTGCAGA 60.037 55.000 23.35 0.00 0.00 4.26
5594 5758 0.320771 ATGGGTGACGAACTGCAGAC 60.321 55.000 23.35 12.87 0.00 3.51
5595 5759 1.668151 GGGTGACGAACTGCAGACC 60.668 63.158 23.35 16.03 0.00 3.85
5596 5760 1.069090 GGTGACGAACTGCAGACCA 59.931 57.895 23.35 7.40 0.00 4.02
5597 5761 0.320771 GGTGACGAACTGCAGACCAT 60.321 55.000 23.35 2.50 0.00 3.55
5598 5762 1.071605 GTGACGAACTGCAGACCATC 58.928 55.000 23.35 12.74 0.00 3.51
5599 5763 0.037326 TGACGAACTGCAGACCATCC 60.037 55.000 23.35 5.32 0.00 3.51
5600 5764 0.037326 GACGAACTGCAGACCATCCA 60.037 55.000 23.35 0.00 0.00 3.41
5601 5765 0.036952 ACGAACTGCAGACCATCCAG 60.037 55.000 23.35 5.05 0.00 3.86
5602 5766 0.036952 CGAACTGCAGACCATCCAGT 60.037 55.000 23.35 0.00 41.26 4.00
5603 5767 1.204704 CGAACTGCAGACCATCCAGTA 59.795 52.381 23.35 0.00 38.77 2.74
5604 5768 2.159043 CGAACTGCAGACCATCCAGTAT 60.159 50.000 23.35 0.00 38.77 2.12
5605 5769 2.996249 ACTGCAGACCATCCAGTATG 57.004 50.000 23.35 0.00 38.00 2.39
5610 5774 2.292267 CAGACCATCCAGTATGCAACC 58.708 52.381 0.00 0.00 33.92 3.77
5611 5775 1.212935 AGACCATCCAGTATGCAACCC 59.787 52.381 0.00 0.00 33.92 4.11
5612 5776 0.998928 ACCATCCAGTATGCAACCCA 59.001 50.000 0.00 0.00 33.92 4.51
5613 5777 1.064463 ACCATCCAGTATGCAACCCAG 60.064 52.381 0.00 0.00 33.92 4.45
5614 5778 1.027357 CATCCAGTATGCAACCCAGC 58.973 55.000 0.00 0.00 31.97 4.85
5615 5779 0.464373 ATCCAGTATGCAACCCAGCG 60.464 55.000 0.00 0.00 37.31 5.18
5616 5780 1.078497 CCAGTATGCAACCCAGCGA 60.078 57.895 0.00 0.00 37.31 4.93
5617 5781 1.091771 CCAGTATGCAACCCAGCGAG 61.092 60.000 0.00 0.00 37.31 5.03
5618 5782 0.391661 CAGTATGCAACCCAGCGAGT 60.392 55.000 0.00 0.00 37.31 4.18
5619 5783 0.108138 AGTATGCAACCCAGCGAGTC 60.108 55.000 0.00 0.00 37.31 3.36
5620 5784 0.108138 GTATGCAACCCAGCGAGTCT 60.108 55.000 0.00 0.00 37.31 3.24
5621 5785 1.136305 GTATGCAACCCAGCGAGTCTA 59.864 52.381 0.00 0.00 37.31 2.59
5622 5786 0.833287 ATGCAACCCAGCGAGTCTAT 59.167 50.000 0.00 0.00 37.31 1.98
5623 5787 0.108186 TGCAACCCAGCGAGTCTATG 60.108 55.000 0.00 0.00 37.31 2.23
5624 5788 0.108138 GCAACCCAGCGAGTCTATGT 60.108 55.000 0.00 0.00 0.00 2.29
5625 5789 1.927895 CAACCCAGCGAGTCTATGTC 58.072 55.000 0.00 0.00 0.00 3.06
5626 5790 0.824759 AACCCAGCGAGTCTATGTCC 59.175 55.000 0.00 0.00 0.00 4.02
5627 5791 1.043673 ACCCAGCGAGTCTATGTCCC 61.044 60.000 0.00 0.00 0.00 4.46
5628 5792 1.360551 CCAGCGAGTCTATGTCCCG 59.639 63.158 0.00 0.00 0.00 5.14
5629 5793 1.299468 CAGCGAGTCTATGTCCCGC 60.299 63.158 0.00 0.00 45.39 6.13
5630 5794 2.027751 GCGAGTCTATGTCCCGCC 59.972 66.667 0.00 0.00 39.97 6.13
5631 5795 2.331805 CGAGTCTATGTCCCGCCG 59.668 66.667 0.00 0.00 0.00 6.46
5632 5796 2.027751 GAGTCTATGTCCCGCCGC 59.972 66.667 0.00 0.00 0.00 6.53
5633 5797 3.501458 GAGTCTATGTCCCGCCGCC 62.501 68.421 0.00 0.00 0.00 6.13
5634 5798 3.537874 GTCTATGTCCCGCCGCCT 61.538 66.667 0.00 0.00 0.00 5.52
5635 5799 2.196502 TCTATGTCCCGCCGCCTA 59.803 61.111 0.00 0.00 0.00 3.93
5636 5800 2.198287 TCTATGTCCCGCCGCCTAC 61.198 63.158 0.00 0.00 0.00 3.18
5637 5801 2.442458 TATGTCCCGCCGCCTACA 60.442 61.111 0.00 0.00 0.00 2.74
5638 5802 2.421877 CTATGTCCCGCCGCCTACAG 62.422 65.000 0.00 0.00 0.00 2.74
5639 5803 2.914756 TATGTCCCGCCGCCTACAGA 62.915 60.000 0.00 0.00 0.00 3.41
5640 5804 3.766691 GTCCCGCCGCCTACAGAA 61.767 66.667 0.00 0.00 0.00 3.02
5641 5805 3.766691 TCCCGCCGCCTACAGAAC 61.767 66.667 0.00 0.00 0.00 3.01
5643 5807 4.124351 CCGCCGCCTACAGAACGA 62.124 66.667 0.00 0.00 0.00 3.85
5644 5808 2.126228 CGCCGCCTACAGAACGAA 60.126 61.111 0.00 0.00 0.00 3.85
5645 5809 2.442188 CGCCGCCTACAGAACGAAC 61.442 63.158 0.00 0.00 0.00 3.95
5646 5810 2.442188 GCCGCCTACAGAACGAACG 61.442 63.158 0.00 0.00 0.00 3.95
5647 5811 2.442188 CCGCCTACAGAACGAACGC 61.442 63.158 0.00 0.00 0.00 4.84
5648 5812 2.442188 CGCCTACAGAACGAACGCC 61.442 63.158 0.00 0.00 0.00 5.68
5649 5813 2.442188 GCCTACAGAACGAACGCCG 61.442 63.158 0.00 0.00 45.44 6.46
5650 5814 1.210931 CCTACAGAACGAACGCCGA 59.789 57.895 4.79 0.00 41.76 5.54
5651 5815 0.179145 CCTACAGAACGAACGCCGAT 60.179 55.000 4.79 0.00 41.76 4.18
5652 5816 1.064505 CCTACAGAACGAACGCCGATA 59.935 52.381 4.79 0.00 41.76 2.92
5653 5817 2.107178 CTACAGAACGAACGCCGATAC 58.893 52.381 4.79 0.00 41.76 2.24
5654 5818 0.524862 ACAGAACGAACGCCGATACT 59.475 50.000 4.79 0.00 41.76 2.12
5655 5819 1.739466 ACAGAACGAACGCCGATACTA 59.261 47.619 4.79 0.00 41.76 1.82
5656 5820 2.107178 CAGAACGAACGCCGATACTAC 58.893 52.381 4.79 0.00 41.76 2.73
5657 5821 1.739466 AGAACGAACGCCGATACTACA 59.261 47.619 4.79 0.00 41.76 2.74
5658 5822 2.357009 AGAACGAACGCCGATACTACAT 59.643 45.455 4.79 0.00 41.76 2.29
5659 5823 3.561310 AGAACGAACGCCGATACTACATA 59.439 43.478 4.79 0.00 41.76 2.29
5660 5824 3.969117 ACGAACGCCGATACTACATAA 57.031 42.857 4.79 0.00 41.76 1.90
5661 5825 4.291540 ACGAACGCCGATACTACATAAA 57.708 40.909 4.79 0.00 41.76 1.40
5662 5826 4.671377 ACGAACGCCGATACTACATAAAA 58.329 39.130 4.79 0.00 41.76 1.52
5663 5827 5.101628 ACGAACGCCGATACTACATAAAAA 58.898 37.500 4.79 0.00 41.76 1.94
5688 5852 7.289587 ACAACATTTTAAACACAAAGTCAGC 57.710 32.000 0.00 0.00 0.00 4.26
5689 5853 6.034470 ACAACATTTTAAACACAAAGTCAGCG 59.966 34.615 0.00 0.00 0.00 5.18
5690 5854 5.885881 ACATTTTAAACACAAAGTCAGCGA 58.114 33.333 0.00 0.00 0.00 4.93
5691 5855 5.741982 ACATTTTAAACACAAAGTCAGCGAC 59.258 36.000 0.00 1.15 0.00 5.19
5692 5856 4.948608 TTTAAACACAAAGTCAGCGACA 57.051 36.364 10.52 0.00 34.60 4.35
5693 5857 2.825086 AAACACAAAGTCAGCGACAC 57.175 45.000 10.52 0.00 34.60 3.67
5694 5858 1.732941 AACACAAAGTCAGCGACACA 58.267 45.000 10.52 0.00 34.60 3.72
5695 5859 1.953559 ACACAAAGTCAGCGACACAT 58.046 45.000 10.52 0.00 34.60 3.21
5696 5860 1.867233 ACACAAAGTCAGCGACACATC 59.133 47.619 10.52 0.00 34.60 3.06
5697 5861 1.866601 CACAAAGTCAGCGACACATCA 59.133 47.619 10.52 0.00 34.60 3.07
5698 5862 1.867233 ACAAAGTCAGCGACACATCAC 59.133 47.619 10.52 0.00 34.60 3.06
5699 5863 1.866601 CAAAGTCAGCGACACATCACA 59.133 47.619 10.52 0.00 34.60 3.58
5700 5864 1.502231 AAGTCAGCGACACATCACAC 58.498 50.000 10.52 0.00 34.60 3.82
5701 5865 0.389025 AGTCAGCGACACATCACACA 59.611 50.000 10.52 0.00 34.60 3.72
5702 5866 1.202521 AGTCAGCGACACATCACACAA 60.203 47.619 10.52 0.00 34.60 3.33
5703 5867 1.597195 GTCAGCGACACATCACACAAA 59.403 47.619 4.20 0.00 32.09 2.83
5704 5868 2.031560 GTCAGCGACACATCACACAAAA 59.968 45.455 4.20 0.00 32.09 2.44
5705 5869 2.031560 TCAGCGACACATCACACAAAAC 59.968 45.455 0.00 0.00 0.00 2.43
5706 5870 1.333619 AGCGACACATCACACAAAACC 59.666 47.619 0.00 0.00 0.00 3.27
5707 5871 1.333619 GCGACACATCACACAAAACCT 59.666 47.619 0.00 0.00 0.00 3.50
5708 5872 2.223479 GCGACACATCACACAAAACCTT 60.223 45.455 0.00 0.00 0.00 3.50
5709 5873 3.617669 CGACACATCACACAAAACCTTC 58.382 45.455 0.00 0.00 0.00 3.46
5710 5874 3.312421 CGACACATCACACAAAACCTTCT 59.688 43.478 0.00 0.00 0.00 2.85
5711 5875 4.552767 CGACACATCACACAAAACCTTCTC 60.553 45.833 0.00 0.00 0.00 2.87
5712 5876 3.312421 ACACATCACACAAAACCTTCTCG 59.688 43.478 0.00 0.00 0.00 4.04
5713 5877 2.878406 ACATCACACAAAACCTTCTCGG 59.122 45.455 0.00 0.00 39.35 4.63
5723 5887 2.456073 ACCTTCTCGGTAGCCATACT 57.544 50.000 0.00 0.00 46.73 2.12
5724 5888 3.589951 ACCTTCTCGGTAGCCATACTA 57.410 47.619 0.00 0.00 46.73 1.82
5725 5889 4.115398 ACCTTCTCGGTAGCCATACTAT 57.885 45.455 0.00 0.00 46.73 2.12
5726 5890 4.481072 ACCTTCTCGGTAGCCATACTATT 58.519 43.478 0.00 0.00 46.73 1.73
5727 5891 4.281182 ACCTTCTCGGTAGCCATACTATTG 59.719 45.833 0.00 0.00 46.73 1.90
5728 5892 4.281182 CCTTCTCGGTAGCCATACTATTGT 59.719 45.833 0.00 0.00 32.15 2.71
5729 5893 4.848562 TCTCGGTAGCCATACTATTGTG 57.151 45.455 0.00 0.00 32.15 3.33
5730 5894 4.466827 TCTCGGTAGCCATACTATTGTGA 58.533 43.478 0.00 0.00 32.15 3.58
5731 5895 5.077564 TCTCGGTAGCCATACTATTGTGAT 58.922 41.667 0.00 0.00 32.15 3.06
5732 5896 5.048013 TCTCGGTAGCCATACTATTGTGATG 60.048 44.000 0.00 0.00 32.15 3.07
5733 5897 4.587262 TCGGTAGCCATACTATTGTGATGT 59.413 41.667 0.00 0.00 32.15 3.06
5734 5898 4.923871 CGGTAGCCATACTATTGTGATGTC 59.076 45.833 0.00 0.00 32.15 3.06
5735 5899 5.508994 CGGTAGCCATACTATTGTGATGTCA 60.509 44.000 0.00 0.00 32.15 3.58
5736 5900 6.467677 GGTAGCCATACTATTGTGATGTCAT 58.532 40.000 0.00 0.00 32.15 3.06
5737 5901 6.591834 GGTAGCCATACTATTGTGATGTCATC 59.408 42.308 5.83 5.83 32.15 2.92
5738 5902 5.555017 AGCCATACTATTGTGATGTCATCC 58.445 41.667 10.36 2.79 0.00 3.51
5739 5903 5.072193 AGCCATACTATTGTGATGTCATCCA 59.928 40.000 10.36 5.30 0.00 3.41
5740 5904 5.942236 GCCATACTATTGTGATGTCATCCAT 59.058 40.000 10.36 2.99 36.13 3.41
5741 5905 7.038088 AGCCATACTATTGTGATGTCATCCATA 60.038 37.037 10.36 3.92 32.56 2.74
5742 5906 7.607607 GCCATACTATTGTGATGTCATCCATAA 59.392 37.037 10.36 3.62 32.56 1.90
5743 5907 9.159364 CCATACTATTGTGATGTCATCCATAAG 57.841 37.037 10.36 9.78 32.56 1.73
5744 5908 9.159364 CATACTATTGTGATGTCATCCATAAGG 57.841 37.037 10.36 0.42 32.56 2.69
5745 5909 7.141758 ACTATTGTGATGTCATCCATAAGGT 57.858 36.000 10.36 0.98 32.56 3.50
5746 5910 7.220030 ACTATTGTGATGTCATCCATAAGGTC 58.780 38.462 10.36 0.00 32.56 3.85
5747 5911 5.698741 TTGTGATGTCATCCATAAGGTCT 57.301 39.130 10.36 0.00 32.56 3.85
5748 5912 6.806668 TTGTGATGTCATCCATAAGGTCTA 57.193 37.500 10.36 0.00 32.56 2.59
5749 5913 6.410942 TGTGATGTCATCCATAAGGTCTAG 57.589 41.667 10.36 0.00 32.56 2.43
5750 5914 6.136155 TGTGATGTCATCCATAAGGTCTAGA 58.864 40.000 10.36 0.00 32.56 2.43
5751 5915 6.784473 TGTGATGTCATCCATAAGGTCTAGAT 59.216 38.462 10.36 0.00 32.56 1.98
5752 5916 7.039434 TGTGATGTCATCCATAAGGTCTAGATC 60.039 40.741 10.36 0.00 32.56 2.75
5753 5917 7.012607 TGATGTCATCCATAAGGTCTAGATCA 58.987 38.462 10.36 0.00 32.56 2.92
5754 5918 7.677319 TGATGTCATCCATAAGGTCTAGATCAT 59.323 37.037 10.36 0.00 32.56 2.45
5755 5919 7.862274 TGTCATCCATAAGGTCTAGATCATT 57.138 36.000 5.64 1.99 35.89 2.57
5756 5920 7.674120 TGTCATCCATAAGGTCTAGATCATTG 58.326 38.462 5.64 0.00 35.89 2.82
5757 5921 6.593382 GTCATCCATAAGGTCTAGATCATTGC 59.407 42.308 5.64 0.00 35.89 3.56
5758 5922 5.489792 TCCATAAGGTCTAGATCATTGCC 57.510 43.478 5.64 0.00 35.89 4.52
5759 5923 4.021104 TCCATAAGGTCTAGATCATTGCCG 60.021 45.833 5.64 0.00 35.89 5.69
5760 5924 2.246719 AAGGTCTAGATCATTGCCGC 57.753 50.000 5.64 0.00 0.00 6.53
5761 5925 0.032678 AGGTCTAGATCATTGCCGCG 59.967 55.000 5.64 0.00 0.00 6.46
5762 5926 0.032130 GGTCTAGATCATTGCCGCGA 59.968 55.000 8.23 0.00 0.00 5.87
5763 5927 1.538204 GGTCTAGATCATTGCCGCGAA 60.538 52.381 8.23 0.00 0.00 4.70
5764 5928 1.523095 GTCTAGATCATTGCCGCGAAC 59.477 52.381 8.23 0.00 0.00 3.95
5765 5929 1.136110 TCTAGATCATTGCCGCGAACA 59.864 47.619 8.23 1.70 0.00 3.18
5766 5930 1.258982 CTAGATCATTGCCGCGAACAC 59.741 52.381 8.23 0.00 0.00 3.32
5767 5931 1.062525 GATCATTGCCGCGAACACC 59.937 57.895 8.23 0.00 0.00 4.16
5768 5932 1.643868 GATCATTGCCGCGAACACCA 61.644 55.000 8.23 0.00 0.00 4.17
5769 5933 1.240641 ATCATTGCCGCGAACACCAA 61.241 50.000 8.23 3.02 0.00 3.67
5770 5934 1.007964 CATTGCCGCGAACACCAAA 60.008 52.632 8.23 0.00 0.00 3.28
5771 5935 0.388391 CATTGCCGCGAACACCAAAT 60.388 50.000 8.23 0.00 0.00 2.32
5772 5936 1.135546 CATTGCCGCGAACACCAAATA 60.136 47.619 8.23 0.00 0.00 1.40
5773 5937 0.519519 TTGCCGCGAACACCAAATAG 59.480 50.000 8.23 0.00 0.00 1.73
5774 5938 0.320858 TGCCGCGAACACCAAATAGA 60.321 50.000 8.23 0.00 0.00 1.98
5775 5939 0.800012 GCCGCGAACACCAAATAGAA 59.200 50.000 8.23 0.00 0.00 2.10
5776 5940 1.198178 GCCGCGAACACCAAATAGAAA 59.802 47.619 8.23 0.00 0.00 2.52
5777 5941 2.159435 GCCGCGAACACCAAATAGAAAT 60.159 45.455 8.23 0.00 0.00 2.17
5778 5942 3.425404 CCGCGAACACCAAATAGAAATG 58.575 45.455 8.23 0.00 0.00 2.32
5779 5943 3.425404 CGCGAACACCAAATAGAAATGG 58.575 45.455 0.00 0.00 42.60 3.16
5780 5944 3.730662 CGCGAACACCAAATAGAAATGGG 60.731 47.826 0.00 0.00 41.17 4.00
5781 5945 3.769536 CGAACACCAAATAGAAATGGGC 58.230 45.455 0.00 0.00 41.17 5.36
5782 5946 3.192422 CGAACACCAAATAGAAATGGGCA 59.808 43.478 0.00 0.00 41.17 5.36
5783 5947 4.142182 CGAACACCAAATAGAAATGGGCAT 60.142 41.667 0.00 0.00 41.17 4.40
5784 5948 5.343307 AACACCAAATAGAAATGGGCATC 57.657 39.130 0.00 0.00 41.17 3.91
5785 5949 4.613437 ACACCAAATAGAAATGGGCATCT 58.387 39.130 0.00 0.00 41.17 2.90
5786 5950 4.646492 ACACCAAATAGAAATGGGCATCTC 59.354 41.667 0.00 0.00 41.17 2.75
5787 5951 4.038402 CACCAAATAGAAATGGGCATCTCC 59.962 45.833 0.00 0.00 41.17 3.71
5788 5952 4.078980 ACCAAATAGAAATGGGCATCTCCT 60.079 41.667 0.00 0.00 41.17 3.69
5789 5953 4.522022 CCAAATAGAAATGGGCATCTCCTC 59.478 45.833 0.00 0.00 32.87 3.71
5790 5954 4.379302 AATAGAAATGGGCATCTCCTCC 57.621 45.455 0.00 0.00 34.39 4.30
5791 5955 1.904440 AGAAATGGGCATCTCCTCCT 58.096 50.000 0.00 0.00 34.39 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.566942 GCATCGTTTGTTCATAACCAGTGTTA 60.567 38.462 0.00 0.00 41.03 2.41
18 19 4.320202 GCATCGTTTGTTCATAACCAGTGT 60.320 41.667 0.00 0.00 0.00 3.55
19 20 4.083324 AGCATCGTTTGTTCATAACCAGTG 60.083 41.667 0.00 0.00 0.00 3.66
24 25 3.608073 GCCAAGCATCGTTTGTTCATAAC 59.392 43.478 0.00 0.00 0.00 1.89
28 30 0.040514 CGCCAAGCATCGTTTGTTCA 60.041 50.000 0.00 0.00 0.00 3.18
34 36 1.004320 TGGTACGCCAAGCATCGTT 60.004 52.632 0.00 0.00 42.83 3.85
140 191 4.729856 GTCGGGTGGTTCGTCGGG 62.730 72.222 0.00 0.00 0.00 5.14
220 271 0.967380 GGATGGGTTTCTGTGGCTGG 60.967 60.000 0.00 0.00 0.00 4.85
221 272 0.967380 GGGATGGGTTTCTGTGGCTG 60.967 60.000 0.00 0.00 0.00 4.85
229 280 4.796495 AGCGCGGGGATGGGTTTC 62.796 66.667 8.83 0.00 0.00 2.78
345 397 2.098117 GTGTTCCATACAAGCATCCTGC 59.902 50.000 0.00 0.00 45.46 4.85
346 398 2.352651 CGTGTTCCATACAAGCATCCTG 59.647 50.000 0.00 0.00 38.80 3.86
354 406 1.231221 GCCACACGTGTTCCATACAA 58.769 50.000 20.79 0.00 38.80 2.41
510 572 2.405357 GCATTATATATAGGCGCTCGCG 59.595 50.000 7.64 6.98 43.06 5.87
511 573 2.405357 CGCATTATATATAGGCGCTCGC 59.595 50.000 20.62 5.60 41.27 5.03
517 579 4.310769 CTGGGAGCGCATTATATATAGGC 58.689 47.826 11.47 7.90 0.00 3.93
1006 1073 4.181010 CCCCACCAGCTCCATCGG 62.181 72.222 0.00 0.00 0.00 4.18
1018 1085 1.522580 GCAAGAGCGATCTCCCCAC 60.523 63.158 2.43 0.00 40.22 4.61
1374 1450 1.677552 CGGTGGCTTACTTGGGTCT 59.322 57.895 0.00 0.00 0.00 3.85
1453 1547 0.038310 AAGCGGGGGAGAAGAAAAGG 59.962 55.000 0.00 0.00 0.00 3.11
1574 1672 0.900421 GGTAGGTTGGTAAGCTCGGT 59.100 55.000 0.00 0.00 40.27 4.69
1581 1679 1.483415 GAGCGATGGGTAGGTTGGTAA 59.517 52.381 0.00 0.00 0.00 2.85
1582 1680 1.117150 GAGCGATGGGTAGGTTGGTA 58.883 55.000 0.00 0.00 0.00 3.25
1629 1748 2.982643 ATGCCACATGCGGGGAAGA 61.983 57.895 1.12 0.00 45.60 2.87
1630 1749 2.440796 ATGCCACATGCGGGGAAG 60.441 61.111 1.12 0.00 45.60 3.46
1631 1750 2.755064 CATGCCACATGCGGGGAA 60.755 61.111 1.12 0.00 45.60 3.97
1633 1752 2.648143 AAACATGCCACATGCGGGG 61.648 57.895 7.46 0.00 45.60 5.73
1635 1754 1.009903 CACAAACATGCCACATGCGG 61.010 55.000 7.46 0.00 45.60 5.69
1654 1773 4.352039 TCGCTCTGATTTTGATACTCGAC 58.648 43.478 0.00 0.00 0.00 4.20
1688 1807 1.472878 ACTCAGCTCAATGCATGCTTG 59.527 47.619 20.33 19.06 45.94 4.01
1772 1891 3.953775 CGAACCACCCCACCAGCT 61.954 66.667 0.00 0.00 0.00 4.24
1895 2014 2.084546 TGCTCTCGATGAAGAACTCGA 58.915 47.619 0.00 0.00 41.27 4.04
2114 2233 3.214123 CGTAGGCCCGATCGGTGA 61.214 66.667 31.22 11.55 0.00 4.02
2121 2240 1.815421 GTCGTAGTCGTAGGCCCGA 60.815 63.158 0.00 0.00 33.78 5.14
2274 2393 3.031013 GGAGAAGAGAGGAAGAAGGAGG 58.969 54.545 0.00 0.00 0.00 4.30
2277 2396 4.093011 TCAAGGAGAAGAGAGGAAGAAGG 58.907 47.826 0.00 0.00 0.00 3.46
2335 2459 0.035458 GGATGGATGGATCGGTGGAC 59.965 60.000 0.00 0.00 0.00 4.02
2373 2497 1.269166 GACGACACTGTTGCTATCGG 58.731 55.000 0.00 0.00 37.11 4.18
2444 2568 0.318445 CGATCGGGTGGTTCGGATAC 60.318 60.000 7.38 0.00 34.88 2.24
2812 2936 4.720902 TCGGGGGTGTCGTAGCGA 62.721 66.667 0.00 0.00 0.00 4.93
2852 2976 2.703798 GGACGGACGATTCGGTGGA 61.704 63.158 11.29 0.00 35.53 4.02
2863 2989 1.079127 CAGTGGGTGATGGACGGAC 60.079 63.158 0.00 0.00 0.00 4.79
2943 3069 0.896940 CCTCTGCAACAACAGGCCAT 60.897 55.000 5.01 0.00 38.26 4.40
3167 3293 2.347731 GGAACACCTAGAAAGAAGGCG 58.652 52.381 0.00 0.00 37.67 5.52
3204 3334 3.066190 CCGTAGACAGCCGGGTCA 61.066 66.667 1.27 0.00 40.54 4.02
3612 3742 2.941415 GCAGTGGGAATTCTGAATCGGT 60.941 50.000 5.23 0.00 34.02 4.69
3623 3753 3.797353 ATCGCCGGCAGTGGGAAT 61.797 61.111 28.98 5.48 0.00 3.01
3644 3775 0.735632 CTCAGCTCAGTTCGTCTGCC 60.736 60.000 5.72 1.22 43.32 4.85
3651 3782 0.179150 ACGATCGCTCAGCTCAGTTC 60.179 55.000 16.60 0.00 0.00 3.01
3663 3794 2.202298 CACCGCCAAAACGATCGC 60.202 61.111 16.60 0.00 34.06 4.58
3664 3795 2.202298 GCACCGCCAAAACGATCG 60.202 61.111 14.88 14.88 34.06 3.69
3679 3810 4.687215 GTGCGTCCTCAGCCTGCA 62.687 66.667 0.00 0.00 0.00 4.41
3825 3956 1.445582 GATGACGCCGTCTCCGTTT 60.446 57.895 19.12 0.00 39.30 3.60
3861 3992 3.390183 CTCCATGCAGTAGCGGCCA 62.390 63.158 2.24 0.00 46.23 5.36
3955 4086 4.217118 AGCCATTTGAAGTGAAGCTTGTAG 59.783 41.667 2.10 0.00 37.59 2.74
3987 4122 4.496670 GCTACTGCAACGGTCGAT 57.503 55.556 0.00 0.00 39.41 3.59
4004 4139 5.066246 ACCAAGCACCAAATGAATTTTTGTG 59.934 36.000 9.36 9.36 41.56 3.33
4006 4141 5.754543 ACCAAGCACCAAATGAATTTTTG 57.245 34.783 0.00 0.00 36.55 2.44
4007 4142 6.152492 ACAAACCAAGCACCAAATGAATTTTT 59.848 30.769 0.00 0.00 0.00 1.94
4008 4143 5.651576 ACAAACCAAGCACCAAATGAATTTT 59.348 32.000 0.00 0.00 0.00 1.82
4009 4144 5.192176 ACAAACCAAGCACCAAATGAATTT 58.808 33.333 0.00 0.00 0.00 1.82
4023 4161 2.163818 TACCTCTGCGACAAACCAAG 57.836 50.000 0.00 0.00 0.00 3.61
4314 4452 3.653009 CACAGCCACACCAGCGTG 61.653 66.667 0.00 0.00 46.11 5.34
4882 5031 1.358877 GCCCAAATCAATGGCGTTTC 58.641 50.000 0.00 0.00 39.26 2.78
4977 5126 3.615224 ATTAGCATGCCCCAGTTTTTG 57.385 42.857 15.66 0.00 0.00 2.44
4983 5132 3.264193 TCCACTATATTAGCATGCCCCAG 59.736 47.826 15.66 5.96 0.00 4.45
5144 5304 5.186256 TGGCACTGGATTATTTTGAGGTA 57.814 39.130 0.00 0.00 0.00 3.08
5164 5324 4.931002 CCAAGTAAGCCATGACAAAATTGG 59.069 41.667 0.00 0.00 0.00 3.16
5175 5335 0.409484 AGGCCAACCAAGTAAGCCAT 59.591 50.000 5.01 0.00 46.35 4.40
5201 5361 8.641499 TTAGTTTCCATTGTGATGTTGTTTTC 57.359 30.769 0.00 0.00 0.00 2.29
5345 5506 4.994852 TCTACACAGTTTTCCCTTTCGATG 59.005 41.667 0.00 0.00 0.00 3.84
5353 5514 2.152016 GGCAGTCTACACAGTTTTCCC 58.848 52.381 0.00 0.00 0.00 3.97
5355 5516 3.467803 ACTGGCAGTCTACACAGTTTTC 58.532 45.455 15.88 0.00 41.03 2.29
5372 5533 4.492791 AAACGATTCCGGTTTTTACTGG 57.507 40.909 0.00 0.00 44.30 4.00
5375 5536 5.287170 AGCTAAACGATTCCGGTTTTTAC 57.713 39.130 0.00 0.00 44.30 2.01
5400 5561 6.183360 CGGGGCAAAAACCTATTTCAAGATAT 60.183 38.462 0.00 0.00 0.00 1.63
5406 5567 1.273886 GCGGGGCAAAAACCTATTTCA 59.726 47.619 0.00 0.00 0.00 2.69
5450 5611 5.620206 ACTTGGATGACTTGTGTATGAACA 58.380 37.500 0.00 0.00 0.00 3.18
5516 5677 7.038659 TGTTTGTTTTCCACTTTTAGGTCATG 58.961 34.615 0.00 0.00 0.00 3.07
5518 5679 6.591750 TGTTTGTTTTCCACTTTTAGGTCA 57.408 33.333 0.00 0.00 0.00 4.02
5519 5680 7.465379 GCATTGTTTGTTTTCCACTTTTAGGTC 60.465 37.037 0.00 0.00 0.00 3.85
5520 5681 6.315144 GCATTGTTTGTTTTCCACTTTTAGGT 59.685 34.615 0.00 0.00 0.00 3.08
5521 5682 6.314896 TGCATTGTTTGTTTTCCACTTTTAGG 59.685 34.615 0.00 0.00 0.00 2.69
5523 5684 7.604164 TCTTGCATTGTTTGTTTTCCACTTTTA 59.396 29.630 0.00 0.00 0.00 1.52
5528 5692 4.629200 TGTCTTGCATTGTTTGTTTTCCAC 59.371 37.500 0.00 0.00 0.00 4.02
5529 5693 4.629200 GTGTCTTGCATTGTTTGTTTTCCA 59.371 37.500 0.00 0.00 0.00 3.53
5531 5695 6.751888 AGTAGTGTCTTGCATTGTTTGTTTTC 59.248 34.615 0.00 0.00 0.00 2.29
5535 5699 6.017109 CCTTAGTAGTGTCTTGCATTGTTTGT 60.017 38.462 0.00 0.00 0.00 2.83
5536 5700 6.373779 CCTTAGTAGTGTCTTGCATTGTTTG 58.626 40.000 0.00 0.00 0.00 2.93
5541 5705 3.622455 GCCCCTTAGTAGTGTCTTGCATT 60.622 47.826 0.00 0.00 0.00 3.56
5551 5715 0.616679 TCTTGGCGCCCCTTAGTAGT 60.617 55.000 26.77 0.00 0.00 2.73
5552 5716 0.105039 CTCTTGGCGCCCCTTAGTAG 59.895 60.000 26.77 9.58 0.00 2.57
5553 5717 0.616679 ACTCTTGGCGCCCCTTAGTA 60.617 55.000 26.77 0.00 0.00 1.82
5554 5718 1.489560 AACTCTTGGCGCCCCTTAGT 61.490 55.000 26.77 18.73 0.00 2.24
5555 5719 1.026718 CAACTCTTGGCGCCCCTTAG 61.027 60.000 26.77 18.05 0.00 2.18
5556 5720 1.002624 CAACTCTTGGCGCCCCTTA 60.003 57.895 26.77 0.59 0.00 2.69
5557 5721 2.142292 ATCAACTCTTGGCGCCCCTT 62.142 55.000 26.77 4.56 0.00 3.95
5558 5722 2.606587 ATCAACTCTTGGCGCCCCT 61.607 57.895 26.77 0.00 0.00 4.79
5559 5723 2.044946 ATCAACTCTTGGCGCCCC 60.045 61.111 26.77 0.00 0.00 5.80
5560 5724 2.409870 CCATCAACTCTTGGCGCCC 61.410 63.158 26.77 6.44 0.00 6.13
5561 5725 2.409870 CCCATCAACTCTTGGCGCC 61.410 63.158 22.73 22.73 0.00 6.53
5562 5726 1.675641 ACCCATCAACTCTTGGCGC 60.676 57.895 0.00 0.00 0.00 6.53
5563 5727 0.321564 TCACCCATCAACTCTTGGCG 60.322 55.000 0.00 0.00 0.00 5.69
5564 5728 1.168714 GTCACCCATCAACTCTTGGC 58.831 55.000 0.00 0.00 0.00 4.52
5565 5729 1.001974 TCGTCACCCATCAACTCTTGG 59.998 52.381 0.00 0.00 0.00 3.61
5566 5730 2.455674 TCGTCACCCATCAACTCTTG 57.544 50.000 0.00 0.00 0.00 3.02
5567 5731 2.368875 AGTTCGTCACCCATCAACTCTT 59.631 45.455 0.00 0.00 0.00 2.85
5568 5732 1.971357 AGTTCGTCACCCATCAACTCT 59.029 47.619 0.00 0.00 0.00 3.24
5569 5733 2.069273 CAGTTCGTCACCCATCAACTC 58.931 52.381 0.00 0.00 0.00 3.01
5570 5734 1.878102 GCAGTTCGTCACCCATCAACT 60.878 52.381 0.00 0.00 0.00 3.16
5571 5735 0.517316 GCAGTTCGTCACCCATCAAC 59.483 55.000 0.00 0.00 0.00 3.18
5572 5736 0.107643 TGCAGTTCGTCACCCATCAA 59.892 50.000 0.00 0.00 0.00 2.57
5573 5737 0.320683 CTGCAGTTCGTCACCCATCA 60.321 55.000 5.25 0.00 0.00 3.07
5574 5738 0.037326 TCTGCAGTTCGTCACCCATC 60.037 55.000 14.67 0.00 0.00 3.51
5575 5739 0.320771 GTCTGCAGTTCGTCACCCAT 60.321 55.000 14.67 0.00 0.00 4.00
5576 5740 1.069090 GTCTGCAGTTCGTCACCCA 59.931 57.895 14.67 0.00 0.00 4.51
5577 5741 1.668151 GGTCTGCAGTTCGTCACCC 60.668 63.158 14.67 0.00 0.00 4.61
5578 5742 0.320771 ATGGTCTGCAGTTCGTCACC 60.321 55.000 14.67 13.13 0.00 4.02
5579 5743 1.071605 GATGGTCTGCAGTTCGTCAC 58.928 55.000 14.67 2.76 0.00 3.67
5580 5744 0.037326 GGATGGTCTGCAGTTCGTCA 60.037 55.000 22.64 13.24 0.00 4.35
5581 5745 0.037326 TGGATGGTCTGCAGTTCGTC 60.037 55.000 14.67 16.19 0.00 4.20
5582 5746 0.036952 CTGGATGGTCTGCAGTTCGT 60.037 55.000 14.67 8.47 38.44 3.85
5583 5747 2.759783 CTGGATGGTCTGCAGTTCG 58.240 57.895 14.67 0.00 38.44 3.95
5587 5751 2.681682 TTGCATACTGGATGGTCTGCAG 60.682 50.000 7.63 7.63 45.26 4.41
5588 5752 0.911053 TGCATACTGGATGGTCTGCA 59.089 50.000 1.35 4.10 43.52 4.41
5589 5753 1.672881 GTTGCATACTGGATGGTCTGC 59.327 52.381 1.35 0.00 38.97 4.26
5590 5754 2.292267 GGTTGCATACTGGATGGTCTG 58.708 52.381 1.35 0.00 35.91 3.51
5591 5755 1.212935 GGGTTGCATACTGGATGGTCT 59.787 52.381 1.35 0.00 35.91 3.85
5592 5756 1.064758 TGGGTTGCATACTGGATGGTC 60.065 52.381 1.35 0.00 35.91 4.02
5593 5757 0.998928 TGGGTTGCATACTGGATGGT 59.001 50.000 1.35 0.00 35.91 3.55
5594 5758 1.683943 CTGGGTTGCATACTGGATGG 58.316 55.000 1.35 0.00 35.91 3.51
5595 5759 1.027357 GCTGGGTTGCATACTGGATG 58.973 55.000 0.00 0.00 38.73 3.51
5596 5760 0.464373 CGCTGGGTTGCATACTGGAT 60.464 55.000 0.00 0.00 0.00 3.41
5597 5761 1.078497 CGCTGGGTTGCATACTGGA 60.078 57.895 0.00 0.00 0.00 3.86
5598 5762 1.078497 TCGCTGGGTTGCATACTGG 60.078 57.895 0.00 0.00 0.00 4.00
5599 5763 0.391661 ACTCGCTGGGTTGCATACTG 60.392 55.000 0.00 0.00 0.00 2.74
5600 5764 0.108138 GACTCGCTGGGTTGCATACT 60.108 55.000 0.00 0.00 0.00 2.12
5601 5765 0.108138 AGACTCGCTGGGTTGCATAC 60.108 55.000 0.00 0.00 0.00 2.39
5602 5766 1.480789 TAGACTCGCTGGGTTGCATA 58.519 50.000 0.00 0.00 0.00 3.14
5603 5767 0.833287 ATAGACTCGCTGGGTTGCAT 59.167 50.000 0.00 0.00 0.00 3.96
5604 5768 0.108186 CATAGACTCGCTGGGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
5605 5769 0.108138 ACATAGACTCGCTGGGTTGC 60.108 55.000 0.00 0.00 0.00 4.17
5606 5770 1.471676 GGACATAGACTCGCTGGGTTG 60.472 57.143 0.00 0.00 0.00 3.77
5607 5771 0.824759 GGACATAGACTCGCTGGGTT 59.175 55.000 0.00 0.00 0.00 4.11
5608 5772 1.043673 GGGACATAGACTCGCTGGGT 61.044 60.000 0.00 0.00 0.00 4.51
5609 5773 1.742768 GGGACATAGACTCGCTGGG 59.257 63.158 0.00 0.00 0.00 4.45
5610 5774 1.360551 CGGGACATAGACTCGCTGG 59.639 63.158 0.00 0.00 0.00 4.85
5614 5778 2.331805 CGGCGGGACATAGACTCG 59.668 66.667 0.00 0.00 0.00 4.18
5615 5779 2.027751 GCGGCGGGACATAGACTC 59.972 66.667 9.78 0.00 0.00 3.36
5616 5780 2.635787 TAGGCGGCGGGACATAGACT 62.636 60.000 9.78 0.00 0.00 3.24
5617 5781 2.198287 TAGGCGGCGGGACATAGAC 61.198 63.158 9.78 0.00 0.00 2.59
5618 5782 2.196502 TAGGCGGCGGGACATAGA 59.803 61.111 9.78 0.00 0.00 1.98
5619 5783 2.338984 GTAGGCGGCGGGACATAG 59.661 66.667 9.78 0.00 0.00 2.23
5620 5784 2.442458 TGTAGGCGGCGGGACATA 60.442 61.111 9.78 0.00 0.00 2.29
5621 5785 3.849951 CTGTAGGCGGCGGGACAT 61.850 66.667 9.78 0.00 0.00 3.06
5623 5787 3.766691 TTCTGTAGGCGGCGGGAC 61.767 66.667 9.78 3.93 0.00 4.46
5624 5788 3.766691 GTTCTGTAGGCGGCGGGA 61.767 66.667 9.78 0.00 0.00 5.14
5626 5790 3.636313 TTCGTTCTGTAGGCGGCGG 62.636 63.158 9.78 0.00 0.00 6.13
5627 5791 2.126228 TTCGTTCTGTAGGCGGCG 60.126 61.111 0.51 0.51 0.00 6.46
5628 5792 2.442188 CGTTCGTTCTGTAGGCGGC 61.442 63.158 0.00 0.00 0.00 6.53
5629 5793 2.442188 GCGTTCGTTCTGTAGGCGG 61.442 63.158 0.00 0.00 0.00 6.13
5630 5794 2.442188 GGCGTTCGTTCTGTAGGCG 61.442 63.158 0.00 0.00 30.49 5.52
5631 5795 2.442188 CGGCGTTCGTTCTGTAGGC 61.442 63.158 0.00 0.00 0.00 3.93
5632 5796 0.179145 ATCGGCGTTCGTTCTGTAGG 60.179 55.000 6.85 0.00 40.32 3.18
5633 5797 2.107178 GTATCGGCGTTCGTTCTGTAG 58.893 52.381 6.85 0.00 40.32 2.74
5634 5798 1.739466 AGTATCGGCGTTCGTTCTGTA 59.261 47.619 6.85 0.00 40.32 2.74
5635 5799 0.524862 AGTATCGGCGTTCGTTCTGT 59.475 50.000 6.85 0.00 40.32 3.41
5636 5800 2.107178 GTAGTATCGGCGTTCGTTCTG 58.893 52.381 6.85 0.00 40.32 3.02
5637 5801 1.739466 TGTAGTATCGGCGTTCGTTCT 59.261 47.619 6.85 1.23 40.32 3.01
5638 5802 2.178474 TGTAGTATCGGCGTTCGTTC 57.822 50.000 6.85 0.00 40.32 3.95
5639 5803 2.857592 ATGTAGTATCGGCGTTCGTT 57.142 45.000 6.85 0.00 40.32 3.85
5640 5804 3.969117 TTATGTAGTATCGGCGTTCGT 57.031 42.857 6.85 0.00 40.32 3.85
5641 5805 5.624715 TTTTTATGTAGTATCGGCGTTCG 57.375 39.130 6.85 0.00 40.90 3.95
5662 5826 8.227119 GCTGACTTTGTGTTTAAAATGTTGTTT 58.773 29.630 0.00 0.00 0.00 2.83
5663 5827 7.411372 CGCTGACTTTGTGTTTAAAATGTTGTT 60.411 33.333 0.00 0.00 0.00 2.83
5664 5828 6.034470 CGCTGACTTTGTGTTTAAAATGTTGT 59.966 34.615 0.00 0.00 0.00 3.32
5665 5829 6.252441 TCGCTGACTTTGTGTTTAAAATGTTG 59.748 34.615 0.00 0.00 0.00 3.33
5666 5830 6.252655 GTCGCTGACTTTGTGTTTAAAATGTT 59.747 34.615 0.00 0.00 0.00 2.71
5667 5831 5.741982 GTCGCTGACTTTGTGTTTAAAATGT 59.258 36.000 0.00 0.00 0.00 2.71
5668 5832 5.741510 TGTCGCTGACTTTGTGTTTAAAATG 59.258 36.000 9.49 0.00 33.15 2.32
5669 5833 5.741982 GTGTCGCTGACTTTGTGTTTAAAAT 59.258 36.000 9.49 0.00 33.15 1.82
5670 5834 5.090083 GTGTCGCTGACTTTGTGTTTAAAA 58.910 37.500 9.49 0.00 33.15 1.52
5671 5835 4.154375 TGTGTCGCTGACTTTGTGTTTAAA 59.846 37.500 9.49 0.00 33.15 1.52
5672 5836 3.685272 TGTGTCGCTGACTTTGTGTTTAA 59.315 39.130 9.49 0.00 33.15 1.52
5673 5837 3.263261 TGTGTCGCTGACTTTGTGTTTA 58.737 40.909 9.49 0.00 33.15 2.01
5674 5838 2.080693 TGTGTCGCTGACTTTGTGTTT 58.919 42.857 9.49 0.00 33.15 2.83
5675 5839 1.732941 TGTGTCGCTGACTTTGTGTT 58.267 45.000 9.49 0.00 33.15 3.32
5676 5840 1.867233 GATGTGTCGCTGACTTTGTGT 59.133 47.619 9.49 0.00 33.15 3.72
5677 5841 1.866601 TGATGTGTCGCTGACTTTGTG 59.133 47.619 9.49 0.00 33.15 3.33
5678 5842 1.867233 GTGATGTGTCGCTGACTTTGT 59.133 47.619 9.49 0.00 33.15 2.83
5679 5843 1.866601 TGTGATGTGTCGCTGACTTTG 59.133 47.619 9.49 0.00 35.86 2.77
5680 5844 1.867233 GTGTGATGTGTCGCTGACTTT 59.133 47.619 9.49 0.00 35.86 2.66
5681 5845 1.202521 TGTGTGATGTGTCGCTGACTT 60.203 47.619 9.49 0.00 35.86 3.01
5682 5846 0.389025 TGTGTGATGTGTCGCTGACT 59.611 50.000 9.49 0.00 35.86 3.41
5683 5847 1.217001 TTGTGTGATGTGTCGCTGAC 58.783 50.000 2.32 2.32 35.86 3.51
5684 5848 1.946745 TTTGTGTGATGTGTCGCTGA 58.053 45.000 0.00 0.00 35.86 4.26
5685 5849 2.375110 GTTTTGTGTGATGTGTCGCTG 58.625 47.619 0.00 0.00 35.86 5.18
5686 5850 1.333619 GGTTTTGTGTGATGTGTCGCT 59.666 47.619 0.00 0.00 35.86 4.93
5687 5851 1.333619 AGGTTTTGTGTGATGTGTCGC 59.666 47.619 0.00 0.00 35.41 5.19
5688 5852 3.312421 AGAAGGTTTTGTGTGATGTGTCG 59.688 43.478 0.00 0.00 0.00 4.35
5689 5853 4.552767 CGAGAAGGTTTTGTGTGATGTGTC 60.553 45.833 0.00 0.00 0.00 3.67
5690 5854 3.312421 CGAGAAGGTTTTGTGTGATGTGT 59.688 43.478 0.00 0.00 0.00 3.72
5691 5855 3.303990 CCGAGAAGGTTTTGTGTGATGTG 60.304 47.826 0.00 0.00 34.51 3.21
5692 5856 2.878406 CCGAGAAGGTTTTGTGTGATGT 59.122 45.455 0.00 0.00 34.51 3.06
5693 5857 3.542712 CCGAGAAGGTTTTGTGTGATG 57.457 47.619 0.00 0.00 34.51 3.07
5706 5870 5.009710 TCACAATAGTATGGCTACCGAGAAG 59.990 44.000 0.00 0.00 31.59 2.85
5707 5871 4.891168 TCACAATAGTATGGCTACCGAGAA 59.109 41.667 0.00 0.00 31.59 2.87
5708 5872 4.466827 TCACAATAGTATGGCTACCGAGA 58.533 43.478 0.00 0.00 31.59 4.04
5709 5873 4.848562 TCACAATAGTATGGCTACCGAG 57.151 45.455 0.00 0.00 31.59 4.63
5710 5874 4.587262 ACATCACAATAGTATGGCTACCGA 59.413 41.667 0.00 0.00 31.59 4.69
5711 5875 4.883083 ACATCACAATAGTATGGCTACCG 58.117 43.478 0.00 0.00 31.59 4.02
5712 5876 5.853936 TGACATCACAATAGTATGGCTACC 58.146 41.667 0.00 0.00 31.59 3.18
5713 5877 6.591834 GGATGACATCACAATAGTATGGCTAC 59.408 42.308 17.08 0.00 31.59 3.58
5714 5878 6.269769 TGGATGACATCACAATAGTATGGCTA 59.730 38.462 17.08 0.00 29.59 3.93
5715 5879 5.072193 TGGATGACATCACAATAGTATGGCT 59.928 40.000 17.08 0.00 29.59 4.75
5716 5880 5.308014 TGGATGACATCACAATAGTATGGC 58.692 41.667 17.08 0.00 0.00 4.40
5717 5881 9.159364 CTTATGGATGACATCACAATAGTATGG 57.841 37.037 17.08 0.00 41.03 2.74
5718 5882 9.159364 CCTTATGGATGACATCACAATAGTATG 57.841 37.037 17.08 5.13 41.03 2.39
5719 5883 8.884323 ACCTTATGGATGACATCACAATAGTAT 58.116 33.333 17.08 0.65 41.03 2.12
5720 5884 8.262601 ACCTTATGGATGACATCACAATAGTA 57.737 34.615 17.08 0.74 41.03 1.82
5721 5885 7.071698 AGACCTTATGGATGACATCACAATAGT 59.928 37.037 17.08 7.30 41.03 2.12
5722 5886 7.448420 AGACCTTATGGATGACATCACAATAG 58.552 38.462 17.08 12.17 41.03 1.73
5723 5887 7.379059 AGACCTTATGGATGACATCACAATA 57.621 36.000 17.08 8.72 41.03 1.90
5724 5888 6.257994 AGACCTTATGGATGACATCACAAT 57.742 37.500 17.08 9.60 41.03 2.71
5725 5889 5.698741 AGACCTTATGGATGACATCACAA 57.301 39.130 17.08 6.60 41.03 3.33
5726 5890 6.136155 TCTAGACCTTATGGATGACATCACA 58.864 40.000 17.08 12.32 41.03 3.58
5727 5891 6.656632 TCTAGACCTTATGGATGACATCAC 57.343 41.667 17.08 7.27 41.03 3.06
5728 5892 7.012607 TGATCTAGACCTTATGGATGACATCA 58.987 38.462 17.08 4.16 41.03 3.07
5729 5893 7.473735 TGATCTAGACCTTATGGATGACATC 57.526 40.000 6.91 6.91 41.03 3.06
5730 5894 8.319881 CAATGATCTAGACCTTATGGATGACAT 58.680 37.037 0.81 0.00 43.68 3.06
5731 5895 7.674120 CAATGATCTAGACCTTATGGATGACA 58.326 38.462 0.81 0.00 37.04 3.58
5732 5896 6.593382 GCAATGATCTAGACCTTATGGATGAC 59.407 42.308 0.81 0.00 37.04 3.06
5733 5897 6.296087 GGCAATGATCTAGACCTTATGGATGA 60.296 42.308 0.81 0.00 37.04 2.92
5734 5898 5.879223 GGCAATGATCTAGACCTTATGGATG 59.121 44.000 0.81 0.00 37.04 3.51
5735 5899 5.337894 CGGCAATGATCTAGACCTTATGGAT 60.338 44.000 0.81 0.00 37.04 3.41
5736 5900 4.021104 CGGCAATGATCTAGACCTTATGGA 60.021 45.833 0.81 0.00 37.04 3.41
5737 5901 4.248859 CGGCAATGATCTAGACCTTATGG 58.751 47.826 0.00 0.00 39.83 2.74
5738 5902 3.681897 GCGGCAATGATCTAGACCTTATG 59.318 47.826 0.00 0.00 0.00 1.90
5739 5903 3.615110 CGCGGCAATGATCTAGACCTTAT 60.615 47.826 0.00 0.00 0.00 1.73
5740 5904 2.288213 CGCGGCAATGATCTAGACCTTA 60.288 50.000 0.00 0.00 0.00 2.69
5741 5905 1.539065 CGCGGCAATGATCTAGACCTT 60.539 52.381 0.00 0.00 0.00 3.50
5742 5906 0.032678 CGCGGCAATGATCTAGACCT 59.967 55.000 0.00 0.00 0.00 3.85
5743 5907 0.032130 TCGCGGCAATGATCTAGACC 59.968 55.000 6.13 0.00 0.00 3.85
5744 5908 1.523095 GTTCGCGGCAATGATCTAGAC 59.477 52.381 6.13 0.00 0.00 2.59
5745 5909 1.136110 TGTTCGCGGCAATGATCTAGA 59.864 47.619 6.13 0.00 0.00 2.43
5746 5910 1.258982 GTGTTCGCGGCAATGATCTAG 59.741 52.381 6.13 0.00 0.00 2.43
5747 5911 1.286501 GTGTTCGCGGCAATGATCTA 58.713 50.000 6.13 0.00 0.00 1.98
5748 5912 1.369091 GGTGTTCGCGGCAATGATCT 61.369 55.000 6.13 0.00 0.00 2.75
5749 5913 1.062525 GGTGTTCGCGGCAATGATC 59.937 57.895 6.13 0.00 0.00 2.92
5750 5914 1.240641 TTGGTGTTCGCGGCAATGAT 61.241 50.000 6.13 0.00 0.00 2.45
5751 5915 1.448119 TTTGGTGTTCGCGGCAATGA 61.448 50.000 6.13 0.00 0.00 2.57
5752 5916 0.388391 ATTTGGTGTTCGCGGCAATG 60.388 50.000 6.13 0.00 0.00 2.82
5753 5917 1.132262 CTATTTGGTGTTCGCGGCAAT 59.868 47.619 6.13 0.00 0.00 3.56
5754 5918 0.519519 CTATTTGGTGTTCGCGGCAA 59.480 50.000 6.13 0.00 0.00 4.52
5755 5919 0.320858 TCTATTTGGTGTTCGCGGCA 60.321 50.000 6.13 2.72 0.00 5.69
5756 5920 0.800012 TTCTATTTGGTGTTCGCGGC 59.200 50.000 6.13 0.00 0.00 6.53
5757 5921 3.425404 CATTTCTATTTGGTGTTCGCGG 58.575 45.455 6.13 0.00 0.00 6.46
5758 5922 3.425404 CCATTTCTATTTGGTGTTCGCG 58.575 45.455 0.00 0.00 0.00 5.87
5759 5923 3.769536 CCCATTTCTATTTGGTGTTCGC 58.230 45.455 0.00 0.00 0.00 4.70
5760 5924 3.192422 TGCCCATTTCTATTTGGTGTTCG 59.808 43.478 0.00 0.00 0.00 3.95
5761 5925 4.799564 TGCCCATTTCTATTTGGTGTTC 57.200 40.909 0.00 0.00 0.00 3.18
5762 5926 5.025453 AGATGCCCATTTCTATTTGGTGTT 58.975 37.500 0.00 0.00 0.00 3.32
5763 5927 4.613437 AGATGCCCATTTCTATTTGGTGT 58.387 39.130 0.00 0.00 0.00 4.16
5764 5928 4.038402 GGAGATGCCCATTTCTATTTGGTG 59.962 45.833 0.00 0.00 0.00 4.17
5765 5929 4.078980 AGGAGATGCCCATTTCTATTTGGT 60.079 41.667 0.00 0.00 37.37 3.67
5766 5930 4.477249 AGGAGATGCCCATTTCTATTTGG 58.523 43.478 0.00 0.00 37.37 3.28
5767 5931 4.522022 GGAGGAGATGCCCATTTCTATTTG 59.478 45.833 0.00 0.00 37.37 2.32
5768 5932 4.418190 AGGAGGAGATGCCCATTTCTATTT 59.582 41.667 0.00 0.00 37.37 1.40
5769 5933 3.986134 AGGAGGAGATGCCCATTTCTATT 59.014 43.478 0.00 0.00 37.37 1.73
5770 5934 3.606972 AGGAGGAGATGCCCATTTCTAT 58.393 45.455 0.00 0.00 37.37 1.98
5771 5935 3.066208 AGGAGGAGATGCCCATTTCTA 57.934 47.619 0.00 0.00 37.37 2.10
5772 5936 1.904440 AGGAGGAGATGCCCATTTCT 58.096 50.000 0.00 0.00 37.37 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.