Multiple sequence alignment - TraesCS2A01G312800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G312800 chr2A 100.000 5388 0 0 1 5388 537408985 537403598 0.000000e+00 9950.0
1 TraesCS2A01G312800 chr2A 92.308 65 5 0 1998 2062 744244649 744244713 5.750000e-15 93.5
2 TraesCS2A01G312800 chr2B 90.436 3942 196 76 632 4458 474447277 474443402 0.000000e+00 5024.0
3 TraesCS2A01G312800 chr2B 91.772 632 26 16 4765 5388 474407163 474406550 0.000000e+00 856.0
4 TraesCS2A01G312800 chr2B 85.468 406 16 13 270 639 474448780 474448382 3.040000e-102 383.0
5 TraesCS2A01G312800 chr2B 92.169 166 10 1 4597 4762 800062814 800062976 1.170000e-56 231.0
6 TraesCS2A01G312800 chr2B 82.593 270 13 10 1 236 474449045 474448776 1.970000e-49 207.0
7 TraesCS2A01G312800 chr2D 92.247 3289 154 53 633 3885 400058685 400055462 0.000000e+00 4567.0
8 TraesCS2A01G312800 chr2D 94.620 632 30 2 4761 5388 400054449 400053818 0.000000e+00 976.0
9 TraesCS2A01G312800 chr2D 89.886 702 29 10 3928 4601 400055136 400054449 0.000000e+00 865.0
10 TraesCS2A01G312800 chr2D 87.805 287 17 5 370 639 400059072 400058787 2.420000e-83 320.0
11 TraesCS2A01G312800 chr2D 79.655 290 20 18 1 259 400066260 400065979 7.170000e-39 172.0
12 TraesCS2A01G312800 chr6D 92.216 167 10 1 4600 4766 229431052 229430889 3.240000e-57 233.0
13 TraesCS2A01G312800 chr4B 92.169 166 10 1 4600 4765 535344997 535345159 1.170000e-56 231.0
14 TraesCS2A01G312800 chr4A 91.716 169 11 1 4596 4764 669198141 669197976 1.170000e-56 231.0
15 TraesCS2A01G312800 chr6B 90.286 175 12 3 4595 4768 130112592 130112762 1.950000e-54 224.0
16 TraesCS2A01G312800 chr3D 90.286 175 12 3 4595 4768 571465363 571465533 1.950000e-54 224.0
17 TraesCS2A01G312800 chr3D 90.286 175 12 3 4595 4768 579494957 579494787 1.950000e-54 224.0
18 TraesCS2A01G312800 chr3A 90.286 175 12 3 4595 4768 568001195 568001365 1.950000e-54 224.0
19 TraesCS2A01G312800 chr3B 89.071 183 15 3 4586 4767 243784220 243784042 7.020000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G312800 chr2A 537403598 537408985 5387 True 9950.000000 9950 100.000000 1 5388 1 chr2A.!!$R1 5387
1 TraesCS2A01G312800 chr2B 474443402 474449045 5643 True 1871.333333 5024 86.165667 1 4458 3 chr2B.!!$R2 4457
2 TraesCS2A01G312800 chr2B 474406550 474407163 613 True 856.000000 856 91.772000 4765 5388 1 chr2B.!!$R1 623
3 TraesCS2A01G312800 chr2D 400053818 400059072 5254 True 1682.000000 4567 91.139500 370 5388 4 chr2D.!!$R2 5018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 144 0.035056 AATTGAGAACCTCCAGGCCG 60.035 55.0 0.00 0.0 39.32 6.13 F
463 512 0.106819 GGATCCTCAATGCAGCTGGT 60.107 55.0 17.12 0.0 0.00 4.00 F
1352 2597 0.179073 TGCTGGCCGATTAGAGAAGC 60.179 55.0 0.00 0.0 0.00 3.86 F
1635 2880 0.611340 ACTTCTTCCTCGCCTACCGT 60.611 55.0 0.00 0.0 38.35 4.83 F
2698 3976 0.615331 TGTTCAGGGCTTCAGGCTAG 59.385 55.0 0.00 0.0 41.46 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 2574 0.461548 CTCTAATCGGCCAGCACTCA 59.538 55.000 2.24 0.0 0.00 3.41 R
2380 3658 0.589708 CCGCATGCACATCACCATAG 59.410 55.000 19.57 0.0 0.00 2.23 R
2790 4072 1.021968 GGTGCACTTTTGAGACCGTT 58.978 50.000 17.98 0.0 0.00 4.44 R
3415 4704 1.003118 AGAAATGCTTCAGTACCGCCA 59.997 47.619 0.00 0.0 33.64 5.69 R
4514 6137 0.099436 GACATGCCATCCGTTTGCTC 59.901 55.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.574006 ACGCACTAGGGATACGGATA 57.426 50.000 0.00 0.00 37.60 2.59
78 95 2.969677 CTTTTGCGGCCGGTTTTGCT 62.970 55.000 29.38 0.00 0.00 3.91
84 101 4.404654 GCCGGTTTTGCTCAGGCG 62.405 66.667 1.90 0.00 42.25 5.52
97 114 1.006102 CAGGCGACCGTCTCACTTT 60.006 57.895 0.00 0.00 0.00 2.66
111 128 3.077359 CTCACTTTTCAGCCCTCGAATT 58.923 45.455 0.00 0.00 0.00 2.17
127 144 0.035056 AATTGAGAACCTCCAGGCCG 60.035 55.000 0.00 0.00 39.32 6.13
143 160 1.204467 GGCCGAAATTTGATTGGCTGA 59.796 47.619 15.74 0.00 45.06 4.26
144 161 2.159057 GGCCGAAATTTGATTGGCTGAT 60.159 45.455 15.74 0.00 45.06 2.90
145 162 2.861935 GCCGAAATTTGATTGGCTGATG 59.138 45.455 0.00 0.00 42.44 3.07
146 163 3.450578 CCGAAATTTGATTGGCTGATGG 58.549 45.455 0.00 0.00 0.00 3.51
150 167 2.219080 TTTGATTGGCTGATGGCTGA 57.781 45.000 0.00 0.00 41.46 4.26
151 168 1.466856 TTGATTGGCTGATGGCTGAC 58.533 50.000 0.00 0.00 41.46 3.51
152 169 0.328926 TGATTGGCTGATGGCTGACA 59.671 50.000 0.00 0.00 41.46 3.58
171 206 1.064060 CAATGAATTTCGCCCGAGTCC 59.936 52.381 0.00 0.00 0.00 3.85
172 207 0.541863 ATGAATTTCGCCCGAGTCCT 59.458 50.000 0.00 0.00 0.00 3.85
180 215 4.411256 TTCGCCCGAGTCCTAAAATATT 57.589 40.909 0.00 0.00 0.00 1.28
181 216 4.411256 TCGCCCGAGTCCTAAAATATTT 57.589 40.909 0.00 0.00 0.00 1.40
216 251 1.428448 TTTCGCCTGTGTTGAGATCG 58.572 50.000 0.00 0.00 0.00 3.69
217 252 1.014044 TTCGCCTGTGTTGAGATCGC 61.014 55.000 0.00 0.00 0.00 4.58
231 266 1.533994 ATCGCCTGGATCGATCCCA 60.534 57.895 35.72 23.92 46.59 4.37
232 267 1.821061 ATCGCCTGGATCGATCCCAC 61.821 60.000 35.72 24.72 46.59 4.61
233 268 2.427753 GCCTGGATCGATCCCACC 59.572 66.667 35.72 21.74 46.59 4.61
234 269 2.443394 GCCTGGATCGATCCCACCA 61.443 63.158 35.72 20.34 46.59 4.17
235 270 1.983119 GCCTGGATCGATCCCACCAA 61.983 60.000 35.72 19.44 46.59 3.67
236 271 0.546122 CCTGGATCGATCCCACCAAA 59.454 55.000 35.72 18.76 46.59 3.28
237 272 1.668419 CTGGATCGATCCCACCAAAC 58.332 55.000 35.72 13.49 46.59 2.93
238 273 0.254747 TGGATCGATCCCACCAAACC 59.745 55.000 35.72 13.69 46.59 3.27
239 274 0.465642 GGATCGATCCCACCAAACCC 60.466 60.000 30.80 4.94 41.20 4.11
240 275 0.254747 GATCGATCCCACCAAACCCA 59.745 55.000 14.76 0.00 0.00 4.51
241 276 0.701731 ATCGATCCCACCAAACCCAA 59.298 50.000 0.00 0.00 0.00 4.12
242 277 0.478942 TCGATCCCACCAAACCCAAA 59.521 50.000 0.00 0.00 0.00 3.28
243 278 0.601057 CGATCCCACCAAACCCAAAC 59.399 55.000 0.00 0.00 0.00 2.93
244 279 0.973632 GATCCCACCAAACCCAAACC 59.026 55.000 0.00 0.00 0.00 3.27
245 280 0.565674 ATCCCACCAAACCCAAACCT 59.434 50.000 0.00 0.00 0.00 3.50
246 281 0.340208 TCCCACCAAACCCAAACCTT 59.660 50.000 0.00 0.00 0.00 3.50
247 282 0.756294 CCCACCAAACCCAAACCTTC 59.244 55.000 0.00 0.00 0.00 3.46
248 283 0.756294 CCACCAAACCCAAACCTTCC 59.244 55.000 0.00 0.00 0.00 3.46
249 284 1.490574 CACCAAACCCAAACCTTCCA 58.509 50.000 0.00 0.00 0.00 3.53
250 285 2.046292 CACCAAACCCAAACCTTCCAT 58.954 47.619 0.00 0.00 0.00 3.41
251 286 3.235200 CACCAAACCCAAACCTTCCATA 58.765 45.455 0.00 0.00 0.00 2.74
252 287 3.258123 CACCAAACCCAAACCTTCCATAG 59.742 47.826 0.00 0.00 0.00 2.23
253 288 3.116900 ACCAAACCCAAACCTTCCATAGT 60.117 43.478 0.00 0.00 0.00 2.12
254 289 3.258123 CCAAACCCAAACCTTCCATAGTG 59.742 47.826 0.00 0.00 0.00 2.74
255 290 2.899303 ACCCAAACCTTCCATAGTGG 57.101 50.000 0.00 0.00 39.43 4.00
256 291 2.070573 ACCCAAACCTTCCATAGTGGT 58.929 47.619 0.00 0.00 39.03 4.16
257 292 3.261962 ACCCAAACCTTCCATAGTGGTA 58.738 45.455 0.00 0.00 39.03 3.25
258 293 3.009805 ACCCAAACCTTCCATAGTGGTAC 59.990 47.826 0.00 0.00 39.03 3.34
259 294 3.617284 CCAAACCTTCCATAGTGGTACC 58.383 50.000 4.43 4.43 39.03 3.34
260 295 3.617284 CAAACCTTCCATAGTGGTACCC 58.383 50.000 10.07 0.32 39.03 3.69
261 296 2.653543 ACCTTCCATAGTGGTACCCA 57.346 50.000 10.07 0.00 39.03 4.51
262 297 2.923908 ACCTTCCATAGTGGTACCCAA 58.076 47.619 10.07 0.00 39.03 4.12
263 298 3.261962 ACCTTCCATAGTGGTACCCAAA 58.738 45.455 10.07 0.00 39.03 3.28
264 299 3.856206 ACCTTCCATAGTGGTACCCAAAT 59.144 43.478 10.07 0.00 39.03 2.32
265 300 4.293901 ACCTTCCATAGTGGTACCCAAATT 59.706 41.667 10.07 0.00 39.03 1.82
266 301 5.222463 ACCTTCCATAGTGGTACCCAAATTT 60.222 40.000 10.07 0.00 39.03 1.82
267 302 6.011451 ACCTTCCATAGTGGTACCCAAATTTA 60.011 38.462 10.07 0.00 39.03 1.40
268 303 6.893005 CCTTCCATAGTGGTACCCAAATTTAA 59.107 38.462 10.07 0.00 39.03 1.52
278 313 5.776208 GGTACCCAAATTTAAACCAAGAGGA 59.224 40.000 0.00 0.00 38.69 3.71
315 350 2.581354 CTTCCCTCGCCCACTCAG 59.419 66.667 0.00 0.00 0.00 3.35
323 358 2.320587 CGCCCACTCAGTTGCTGTC 61.321 63.158 0.00 0.00 32.61 3.51
349 384 1.342174 AGTTCCTCCGTTCGCTTACAA 59.658 47.619 0.00 0.00 0.00 2.41
355 404 0.519519 CCGTTCGCTTACAATTGGCA 59.480 50.000 10.83 0.00 0.00 4.92
358 407 2.440501 GTTCGCTTACAATTGGCATCG 58.559 47.619 10.83 8.07 0.00 3.84
363 412 3.725740 CGCTTACAATTGGCATCGAATTC 59.274 43.478 10.83 0.00 0.00 2.17
399 448 0.798776 GAGCATCCGGTGAAACACTG 59.201 55.000 0.00 0.00 39.98 3.66
457 506 2.190538 TCAGACAGGATCCTCAATGCA 58.809 47.619 12.69 0.00 0.00 3.96
460 509 0.917533 ACAGGATCCTCAATGCAGCT 59.082 50.000 12.69 0.00 0.00 4.24
461 510 1.309950 CAGGATCCTCAATGCAGCTG 58.690 55.000 12.69 10.11 0.00 4.24
462 511 0.183014 AGGATCCTCAATGCAGCTGG 59.817 55.000 17.12 0.00 0.00 4.85
463 512 0.106819 GGATCCTCAATGCAGCTGGT 60.107 55.000 17.12 0.00 0.00 4.00
464 513 1.022735 GATCCTCAATGCAGCTGGTG 58.977 55.000 17.12 1.76 0.00 4.17
465 514 0.395311 ATCCTCAATGCAGCTGGTGG 60.395 55.000 17.12 9.02 0.00 4.61
466 515 1.001764 CCTCAATGCAGCTGGTGGA 60.002 57.895 17.12 6.21 0.00 4.02
577 638 6.721704 AGATGACTAGACTGCAATGATGTA 57.278 37.500 0.00 0.00 0.00 2.29
578 639 6.747125 AGATGACTAGACTGCAATGATGTAG 58.253 40.000 0.00 0.00 44.04 2.74
678 1868 6.143919 GCAGATTAGTTTGTTTGTTTAGGCAC 59.856 38.462 0.00 0.00 0.00 5.01
679 1869 7.199766 CAGATTAGTTTGTTTGTTTAGGCACA 58.800 34.615 0.00 0.00 0.00 4.57
681 1871 6.518208 TTAGTTTGTTTGTTTAGGCACAGT 57.482 33.333 0.00 0.00 0.00 3.55
682 1872 4.743493 AGTTTGTTTGTTTAGGCACAGTG 58.257 39.130 0.00 0.00 0.00 3.66
683 1873 3.791973 TTGTTTGTTTAGGCACAGTGG 57.208 42.857 1.84 0.00 0.00 4.00
684 1874 2.729194 TGTTTGTTTAGGCACAGTGGT 58.271 42.857 1.84 0.00 0.00 4.16
685 1875 3.887352 TGTTTGTTTAGGCACAGTGGTA 58.113 40.909 1.84 0.00 0.00 3.25
686 1876 3.628487 TGTTTGTTTAGGCACAGTGGTAC 59.372 43.478 1.84 0.00 0.00 3.34
687 1877 2.157834 TGTTTAGGCACAGTGGTACG 57.842 50.000 1.84 0.00 0.00 3.67
688 1878 1.413445 TGTTTAGGCACAGTGGTACGT 59.587 47.619 1.84 0.00 0.00 3.57
689 1879 1.796459 GTTTAGGCACAGTGGTACGTG 59.204 52.381 1.84 0.00 36.18 4.49
690 1880 0.319083 TTAGGCACAGTGGTACGTGG 59.681 55.000 1.84 0.00 33.62 4.94
754 1963 3.897505 AGCTTTGCAAGTGGTTTCCTTAT 59.102 39.130 0.00 0.00 0.00 1.73
755 1964 5.048083 CAGCTTTGCAAGTGGTTTCCTTATA 60.048 40.000 0.00 0.00 0.00 0.98
756 1965 5.538433 AGCTTTGCAAGTGGTTTCCTTATAA 59.462 36.000 0.00 0.00 0.00 0.98
757 1966 5.633601 GCTTTGCAAGTGGTTTCCTTATAAC 59.366 40.000 0.00 0.00 0.00 1.89
914 2124 4.018409 GTGCCCAATCACCCCTTC 57.982 61.111 0.00 0.00 0.00 3.46
915 2125 1.384191 GTGCCCAATCACCCCTTCT 59.616 57.895 0.00 0.00 0.00 2.85
965 2175 1.512926 GCCACATGTCCGGTCATATC 58.487 55.000 13.97 0.72 0.00 1.63
985 2195 3.317150 TCTGTATATATGTGTGCAGCGC 58.683 45.455 0.00 0.00 31.03 5.92
1028 2238 4.023707 GCTCAGAGCAACACATTTAACACT 60.024 41.667 18.17 0.00 41.89 3.55
1029 2239 5.506317 GCTCAGAGCAACACATTTAACACTT 60.506 40.000 18.17 0.00 41.89 3.16
1035 2245 5.063312 AGCAACACATTTAACACTTGCAAAC 59.937 36.000 0.00 0.00 37.14 2.93
1038 2248 5.719173 ACACATTTAACACTTGCAAACTGT 58.281 33.333 0.00 1.83 0.00 3.55
1039 2249 6.857956 ACACATTTAACACTTGCAAACTGTA 58.142 32.000 9.31 0.00 0.00 2.74
1040 2250 6.750039 ACACATTTAACACTTGCAAACTGTAC 59.250 34.615 9.31 0.00 0.00 2.90
1068 2299 1.202746 GCATGGAGAGGGAGATTGGTC 60.203 57.143 0.00 0.00 0.00 4.02
1097 2328 2.035193 TGAGCTGAACGAGATAGATGGC 59.965 50.000 0.00 0.00 0.00 4.40
1265 2496 3.065925 GGTACGTCCGTAAGATAGTGCTT 59.934 47.826 0.46 0.00 43.02 3.91
1266 2497 4.273480 GGTACGTCCGTAAGATAGTGCTTA 59.727 45.833 0.46 0.00 43.02 3.09
1268 2499 4.194640 ACGTCCGTAAGATAGTGCTTAGA 58.805 43.478 0.00 0.00 43.02 2.10
1270 2501 5.206299 CGTCCGTAAGATAGTGCTTAGAAG 58.794 45.833 0.00 0.00 43.02 2.85
1295 2540 6.513066 GCCAGATAGTGCTGAAAAAGATGATC 60.513 42.308 0.00 0.00 38.14 2.92
1314 2559 7.827236 AGATGATCCAAATGTTGCATTCAAAAT 59.173 29.630 0.00 0.00 31.57 1.82
1319 2564 7.585867 TCCAAATGTTGCATTCAAAATCAATG 58.414 30.769 0.00 0.00 28.98 2.82
1320 2565 7.444487 TCCAAATGTTGCATTCAAAATCAATGA 59.556 29.630 0.00 0.00 33.69 2.57
1323 2568 9.491675 AAATGTTGCATTCAAAATCAATGACTA 57.508 25.926 0.00 0.00 33.69 2.59
1324 2569 9.661563 AATGTTGCATTCAAAATCAATGACTAT 57.338 25.926 0.00 0.00 33.69 2.12
1341 2586 2.205074 CTATTAACTGAGTGCTGGCCG 58.795 52.381 0.00 0.00 0.00 6.13
1342 2587 0.613260 ATTAACTGAGTGCTGGCCGA 59.387 50.000 0.00 0.00 0.00 5.54
1351 2596 1.137872 AGTGCTGGCCGATTAGAGAAG 59.862 52.381 0.00 0.00 0.00 2.85
1352 2597 0.179073 TGCTGGCCGATTAGAGAAGC 60.179 55.000 0.00 0.00 0.00 3.86
1365 2610 3.249986 AGAGAAGCTCTGCATGAGAAC 57.750 47.619 14.86 6.85 45.39 3.01
1533 2778 1.221021 CTTCTACACCCCCTTCGCC 59.779 63.158 0.00 0.00 0.00 5.54
1635 2880 0.611340 ACTTCTTCCTCGCCTACCGT 60.611 55.000 0.00 0.00 38.35 4.83
1704 2953 1.738365 CGGTCAGAGCCTCTCACAATG 60.738 57.143 0.00 0.00 32.06 2.82
1715 2964 3.677121 CCTCTCACAATGAACTCAAGACG 59.323 47.826 0.00 0.00 0.00 4.18
1721 2970 4.452114 CACAATGAACTCAAGACGGAATGA 59.548 41.667 0.00 0.00 0.00 2.57
1724 2973 4.271696 TGAACTCAAGACGGAATGACAT 57.728 40.909 0.00 0.00 0.00 3.06
1725 2974 3.996363 TGAACTCAAGACGGAATGACATG 59.004 43.478 0.00 0.00 0.00 3.21
1753 3002 5.591099 TGAATTTCTGAAAGTGTTCTTGCC 58.409 37.500 7.92 0.00 34.60 4.52
1850 3099 8.573035 GGTAAATTAACTTGGTTCACAATCTCA 58.427 33.333 0.00 0.00 38.65 3.27
1860 3109 5.349824 GTTCACAATCTCAAGAACCAGTC 57.650 43.478 0.00 0.00 35.52 3.51
1861 3110 4.008074 TCACAATCTCAAGAACCAGTCC 57.992 45.455 0.00 0.00 0.00 3.85
1865 3114 3.810310 ATCTCAAGAACCAGTCCGATC 57.190 47.619 0.00 0.00 0.00 3.69
1914 3163 5.907197 AAAGAAGTTGATACACACACGAG 57.093 39.130 0.00 0.00 0.00 4.18
2200 3449 3.610669 CCTGGATCGGGAGCCTCG 61.611 72.222 4.43 0.00 37.85 4.63
2328 3577 1.779025 ATTCTCGACGCCATGCATGC 61.779 55.000 21.69 11.82 0.00 4.06
2392 3670 1.019673 GTGCAGGCTATGGTGATGTG 58.980 55.000 0.00 0.00 0.00 3.21
2557 3835 3.771479 AGCTCATCAGGTACATGAACAGA 59.229 43.478 15.00 11.56 31.76 3.41
2581 3859 2.783275 CTGTGCAGCGACATCAGC 59.217 61.111 0.00 0.00 0.00 4.26
2642 3920 3.698539 CAGCTACAAGAGAGACAGGATCA 59.301 47.826 0.00 0.00 0.00 2.92
2677 3955 2.511600 GCGGTCCGATCCAAGGTG 60.512 66.667 17.49 0.00 0.00 4.00
2698 3976 0.615331 TGTTCAGGGCTTCAGGCTAG 59.385 55.000 0.00 0.00 41.46 3.42
2718 3999 7.724061 AGGCTAGTTTTTCTCTGACCAAATAAA 59.276 33.333 0.00 0.00 0.00 1.40
2719 4000 8.523658 GGCTAGTTTTTCTCTGACCAAATAAAT 58.476 33.333 0.00 0.00 0.00 1.40
2720 4001 9.914131 GCTAGTTTTTCTCTGACCAAATAAATT 57.086 29.630 0.00 0.00 0.00 1.82
2733 4014 8.835439 TGACCAAATAAATTTTCTTTTTGGAGC 58.165 29.630 25.42 19.88 45.87 4.70
2736 4017 9.449550 CCAAATAAATTTTCTTTTTGGAGCAAC 57.550 29.630 19.52 0.00 45.87 4.17
2767 4049 8.770438 TCAGTTTGAGCATTTTGTTTTAAACT 57.230 26.923 9.33 0.00 37.54 2.66
2772 4054 8.419076 TTGAGCATTTTGTTTTAAACTTCTCC 57.581 30.769 9.33 0.00 0.00 3.71
2996 4278 2.356665 TTTTGGAGCAAGGCACTGTA 57.643 45.000 0.00 0.00 40.86 2.74
3054 4339 8.837389 GTCTGGTACTACTTTTCACTGAATTTT 58.163 33.333 0.00 0.00 0.00 1.82
3078 4367 6.877611 TCTCCATAAACCAAGAGAAAACAC 57.122 37.500 0.00 0.00 32.58 3.32
3085 4374 5.567138 AACCAAGAGAAAACACAACTCTG 57.433 39.130 0.00 0.00 40.28 3.35
3101 4390 5.012148 ACAACTCTGCTGTATTACTGACCTT 59.988 40.000 5.02 0.00 0.00 3.50
3114 4403 4.744795 ACTGACCTTCACCTATCATGTC 57.255 45.455 0.00 0.00 0.00 3.06
3397 4686 9.261180 GCAGTAGAATCATAGTAAATGTTAGCA 57.739 33.333 0.00 0.00 0.00 3.49
3412 4701 3.971871 TGTTAGCATTTCGACGCAAAAAG 59.028 39.130 3.75 0.00 0.00 2.27
3413 4702 4.215965 GTTAGCATTTCGACGCAAAAAGA 58.784 39.130 3.75 0.00 0.00 2.52
3415 4704 3.900941 AGCATTTCGACGCAAAAAGATT 58.099 36.364 3.75 0.00 0.00 2.40
3416 4705 3.670055 AGCATTTCGACGCAAAAAGATTG 59.330 39.130 3.75 0.00 0.00 2.67
3454 4743 0.181587 TTCTGCAGGGGAAACGAACA 59.818 50.000 15.13 0.00 0.00 3.18
3556 4845 1.442773 ATGCTGCCTACCATGGAGAT 58.557 50.000 21.47 0.00 0.00 2.75
3643 4932 0.974383 CCTCCTTGGTACGTGAACCT 59.026 55.000 8.89 0.00 40.44 3.50
3670 4962 7.700505 TGCAGATCAATCATCAGTCAAATTAC 58.299 34.615 0.00 0.00 33.29 1.89
3686 4978 6.879458 GTCAAATTACTACAGGAGTTCCACAT 59.121 38.462 0.00 0.00 39.81 3.21
3687 4979 6.878923 TCAAATTACTACAGGAGTTCCACATG 59.121 38.462 0.00 0.00 39.81 3.21
3699 4991 5.127356 GGAGTTCCACATGCTAACTAGTACT 59.873 44.000 0.00 0.00 33.72 2.73
3700 4992 6.320672 GGAGTTCCACATGCTAACTAGTACTA 59.679 42.308 1.89 1.89 33.72 1.82
3701 4993 7.098074 AGTTCCACATGCTAACTAGTACTAC 57.902 40.000 0.00 0.00 31.84 2.73
3778 5070 6.381133 ACTCTTCAACTTTTCCCACATCTTTT 59.619 34.615 0.00 0.00 0.00 2.27
3835 5127 5.986501 AGATATCGTCAGGTTCCTTATCC 57.013 43.478 0.00 0.00 0.00 2.59
3880 5464 2.067365 AGGTGCGGTTTCCTTTTTCT 57.933 45.000 0.00 0.00 0.00 2.52
3881 5465 2.384828 AGGTGCGGTTTCCTTTTTCTT 58.615 42.857 0.00 0.00 0.00 2.52
3885 5469 4.033587 GGTGCGGTTTCCTTTTTCTTTTTC 59.966 41.667 0.00 0.00 0.00 2.29
3886 5470 4.868171 GTGCGGTTTCCTTTTTCTTTTTCT 59.132 37.500 0.00 0.00 0.00 2.52
3888 5472 6.700081 GTGCGGTTTCCTTTTTCTTTTTCTAT 59.300 34.615 0.00 0.00 0.00 1.98
3889 5473 7.223971 GTGCGGTTTCCTTTTTCTTTTTCTATT 59.776 33.333 0.00 0.00 0.00 1.73
3890 5474 7.766738 TGCGGTTTCCTTTTTCTTTTTCTATTT 59.233 29.630 0.00 0.00 0.00 1.40
3891 5475 9.251792 GCGGTTTCCTTTTTCTTTTTCTATTTA 57.748 29.630 0.00 0.00 0.00 1.40
3910 5494 8.559536 TCTATTTACAGAAGCAGTTCAAAACAG 58.440 33.333 0.00 0.00 34.82 3.16
3913 5497 5.741388 ACAGAAGCAGTTCAAAACAGTAG 57.259 39.130 0.00 0.00 34.82 2.57
3914 5498 5.186198 ACAGAAGCAGTTCAAAACAGTAGT 58.814 37.500 0.00 0.00 34.82 2.73
3916 5500 6.992715 ACAGAAGCAGTTCAAAACAGTAGTAT 59.007 34.615 0.00 0.00 34.82 2.12
3917 5501 7.041780 ACAGAAGCAGTTCAAAACAGTAGTATG 60.042 37.037 0.00 0.00 34.82 2.39
3918 5502 7.171508 CAGAAGCAGTTCAAAACAGTAGTATGA 59.828 37.037 0.00 0.00 34.82 2.15
3919 5503 7.715249 AGAAGCAGTTCAAAACAGTAGTATGAA 59.285 33.333 0.00 0.00 34.82 2.57
3920 5504 7.426929 AGCAGTTCAAAACAGTAGTATGAAG 57.573 36.000 0.00 0.00 35.60 3.02
3921 5505 6.073003 AGCAGTTCAAAACAGTAGTATGAAGC 60.073 38.462 0.00 0.00 35.60 3.86
3922 5506 6.293407 GCAGTTCAAAACAGTAGTATGAAGCA 60.293 38.462 0.00 0.00 35.60 3.91
3923 5507 7.639039 CAGTTCAAAACAGTAGTATGAAGCAA 58.361 34.615 0.00 0.00 35.60 3.91
3924 5508 7.587757 CAGTTCAAAACAGTAGTATGAAGCAAC 59.412 37.037 0.00 0.00 35.60 4.17
3925 5509 7.499232 AGTTCAAAACAGTAGTATGAAGCAACT 59.501 33.333 0.00 0.00 35.60 3.16
3926 5510 8.770828 GTTCAAAACAGTAGTATGAAGCAACTA 58.229 33.333 0.00 0.00 35.60 2.24
4217 5802 0.038744 CTGGGATGCTGGTGGAGTTT 59.961 55.000 0.00 0.00 0.00 2.66
4338 5930 3.574445 CTGCTGCTGCTGCCGATC 61.574 66.667 25.44 2.06 40.48 3.69
4353 5945 4.522114 TGCCGATCATTAGGTTCATCAAA 58.478 39.130 0.00 0.00 0.00 2.69
4405 6019 5.710567 GGGGTAGGAACTATTATTGGCAATC 59.289 44.000 17.41 0.65 45.60 2.67
4460 6083 7.120432 GGATTCATTTCAAAGAGAAGTAGCACT 59.880 37.037 0.00 0.00 37.57 4.40
4463 6086 4.955811 TTCAAAGAGAAGTAGCACTCCA 57.044 40.909 0.00 0.00 34.13 3.86
4467 6090 4.734398 AAGAGAAGTAGCACTCCAGATG 57.266 45.455 0.00 0.00 34.13 2.90
4472 6095 1.415659 AGTAGCACTCCAGATGCCATC 59.584 52.381 0.00 0.00 44.53 3.51
4491 6114 3.610040 TCGCAAAGATGTGTATCCAGT 57.390 42.857 0.00 0.00 38.25 4.00
4495 6118 4.002982 GCAAAGATGTGTATCCAGTGTGA 58.997 43.478 0.00 0.00 33.64 3.58
4514 6137 2.012673 GAGAGTAACAATGGCAGGCAG 58.987 52.381 1.89 0.00 0.00 4.85
4554 6178 7.825331 TGTCAATTCACTAACCAACCATTTA 57.175 32.000 0.00 0.00 0.00 1.40
4601 6225 5.088739 CGCTCAACAATCCATCAAAACTAC 58.911 41.667 0.00 0.00 0.00 2.73
4603 6227 6.317857 GCTCAACAATCCATCAAAACTACTC 58.682 40.000 0.00 0.00 0.00 2.59
4604 6228 6.623767 GCTCAACAATCCATCAAAACTACTCC 60.624 42.308 0.00 0.00 0.00 3.85
4606 6230 6.947733 TCAACAATCCATCAAAACTACTCCAT 59.052 34.615 0.00 0.00 0.00 3.41
4607 6231 7.121168 TCAACAATCCATCAAAACTACTCCATC 59.879 37.037 0.00 0.00 0.00 3.51
4608 6232 6.725364 ACAATCCATCAAAACTACTCCATCT 58.275 36.000 0.00 0.00 0.00 2.90
4609 6233 6.600822 ACAATCCATCAAAACTACTCCATCTG 59.399 38.462 0.00 0.00 0.00 2.90
4610 6234 5.762179 TCCATCAAAACTACTCCATCTGT 57.238 39.130 0.00 0.00 0.00 3.41
4611 6235 6.126863 TCCATCAAAACTACTCCATCTGTT 57.873 37.500 0.00 0.00 0.00 3.16
4612 6236 6.173339 TCCATCAAAACTACTCCATCTGTTC 58.827 40.000 0.00 0.00 0.00 3.18
4613 6237 5.355350 CCATCAAAACTACTCCATCTGTTCC 59.645 44.000 0.00 0.00 0.00 3.62
4614 6238 5.825593 TCAAAACTACTCCATCTGTTCCT 57.174 39.130 0.00 0.00 0.00 3.36
4615 6239 6.928348 TCAAAACTACTCCATCTGTTCCTA 57.072 37.500 0.00 0.00 0.00 2.94
4616 6240 7.311092 TCAAAACTACTCCATCTGTTCCTAA 57.689 36.000 0.00 0.00 0.00 2.69
4617 6241 7.741785 TCAAAACTACTCCATCTGTTCCTAAA 58.258 34.615 0.00 0.00 0.00 1.85
4618 6242 8.383175 TCAAAACTACTCCATCTGTTCCTAAAT 58.617 33.333 0.00 0.00 0.00 1.40
4619 6243 9.667107 CAAAACTACTCCATCTGTTCCTAAATA 57.333 33.333 0.00 0.00 0.00 1.40
4626 6250 9.440761 ACTCCATCTGTTCCTAAATATAAGTCT 57.559 33.333 0.00 0.00 0.00 3.24
4650 6274 9.958180 TCTTTGTAGAGATTTCATTATGAACCA 57.042 29.630 7.19 0.00 35.89 3.67
4651 6275 9.994432 CTTTGTAGAGATTTCATTATGAACCAC 57.006 33.333 7.19 2.67 35.89 4.16
4652 6276 9.513906 TTTGTAGAGATTTCATTATGAACCACA 57.486 29.630 7.19 0.00 35.89 4.17
4653 6277 9.685276 TTGTAGAGATTTCATTATGAACCACAT 57.315 29.630 7.19 0.00 35.89 3.21
4657 6281 9.334947 AGAGATTTCATTATGAACCACATACAG 57.665 33.333 7.19 0.00 40.62 2.74
4658 6282 9.330063 GAGATTTCATTATGAACCACATACAGA 57.670 33.333 7.19 0.00 40.62 3.41
4659 6283 9.857656 AGATTTCATTATGAACCACATACAGAT 57.142 29.630 7.19 0.00 40.62 2.90
4660 6284 9.888878 GATTTCATTATGAACCACATACAGATG 57.111 33.333 7.19 0.00 40.62 2.90
4661 6285 8.806429 TTTCATTATGAACCACATACAGATGT 57.194 30.769 7.19 0.00 40.51 3.06
4662 6286 9.898152 TTTCATTATGAACCACATACAGATGTA 57.102 29.630 7.19 0.00 39.04 2.29
4671 6295 9.307121 GAACCACATACAGATGTATATAGATGC 57.693 37.037 5.21 0.00 44.82 3.91
4672 6296 8.366359 ACCACATACAGATGTATATAGATGCA 57.634 34.615 5.21 0.00 44.82 3.96
4673 6297 8.985922 ACCACATACAGATGTATATAGATGCAT 58.014 33.333 0.00 0.00 44.82 3.96
4674 6298 9.828039 CCACATACAGATGTATATAGATGCATT 57.172 33.333 0.00 0.00 44.82 3.56
4690 6314 9.842775 ATAGATGCATTTTAGAGTGAAGATTCA 57.157 29.630 0.00 0.00 34.20 2.57
4721 6345 9.470399 TTTTACTCTGTATGTAGTCCATAGTGA 57.530 33.333 0.00 0.00 36.71 3.41
4722 6346 9.470399 TTTACTCTGTATGTAGTCCATAGTGAA 57.530 33.333 0.00 0.00 36.71 3.18
4723 6347 7.956328 ACTCTGTATGTAGTCCATAGTGAAA 57.044 36.000 0.00 0.00 36.71 2.69
4724 6348 8.540507 ACTCTGTATGTAGTCCATAGTGAAAT 57.459 34.615 0.00 0.00 36.71 2.17
4725 6349 8.634444 ACTCTGTATGTAGTCCATAGTGAAATC 58.366 37.037 0.00 0.00 36.71 2.17
4726 6350 8.768501 TCTGTATGTAGTCCATAGTGAAATCT 57.231 34.615 0.00 0.00 36.71 2.40
4727 6351 9.862149 TCTGTATGTAGTCCATAGTGAAATCTA 57.138 33.333 0.00 0.00 36.71 1.98
4755 6379 9.813446 ACAAAGACTTATAGTATTTAGGAACGG 57.187 33.333 0.00 0.00 37.52 4.44
4758 6382 8.406730 AGACTTATAGTATTTAGGAACGGAGG 57.593 38.462 0.00 0.00 0.00 4.30
4759 6383 7.450944 AGACTTATAGTATTTAGGAACGGAGGG 59.549 40.741 0.00 0.00 0.00 4.30
4760 6384 7.300658 ACTTATAGTATTTAGGAACGGAGGGA 58.699 38.462 0.00 0.00 0.00 4.20
4761 6385 7.450944 ACTTATAGTATTTAGGAACGGAGGGAG 59.549 40.741 0.00 0.00 0.00 4.30
4762 6386 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
4763 6387 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
4764 6388 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
4765 6389 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
4766 6390 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
4767 6391 2.617840 AGGAACGGAGGGAGTAGAAA 57.382 50.000 0.00 0.00 0.00 2.52
4768 6392 2.458620 AGGAACGGAGGGAGTAGAAAG 58.541 52.381 0.00 0.00 0.00 2.62
4769 6393 1.134759 GGAACGGAGGGAGTAGAAAGC 60.135 57.143 0.00 0.00 0.00 3.51
4770 6394 1.549170 GAACGGAGGGAGTAGAAAGCA 59.451 52.381 0.00 0.00 0.00 3.91
4771 6395 1.640917 ACGGAGGGAGTAGAAAGCAA 58.359 50.000 0.00 0.00 0.00 3.91
4794 6418 6.202202 ACAGATGGCCTACTCATACTACTA 57.798 41.667 3.32 0.00 0.00 1.82
4859 6485 6.333416 TGATTTTGATTTGAAACGGTGTCAA 58.667 32.000 9.66 9.66 33.21 3.18
4920 6546 1.579429 GCCAACGGCCTGTACAAAG 59.421 57.895 0.00 0.00 44.06 2.77
4968 6594 5.476599 CCAAAATCCTAACATGTCACCAAGA 59.523 40.000 0.00 0.00 0.00 3.02
5068 6702 1.272490 ACGAGTCGGAAGCTTTCATCA 59.728 47.619 18.30 0.00 0.00 3.07
5158 6792 0.537188 ATTCCGTTCGCCATCTCAGT 59.463 50.000 0.00 0.00 0.00 3.41
5168 6802 0.817654 CCATCTCAGTAGTCACGCCA 59.182 55.000 0.00 0.00 0.00 5.69
5246 6880 1.260825 TCGTTAGCGCTGTAGATCTCG 59.739 52.381 22.90 12.23 38.14 4.04
5248 6882 2.641912 GTTAGCGCTGTAGATCTCGTC 58.358 52.381 22.90 0.00 0.00 4.20
5312 6946 0.394899 CCTCTTTGCCACCATCCTCC 60.395 60.000 0.00 0.00 0.00 4.30
5359 6993 5.047092 CCATTACCTTCCAGCTGTTGAAATT 60.047 40.000 13.81 2.54 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.757306 CAGGTCTGCAGAGTTGGGT 59.243 57.895 18.89 0.00 0.00 4.51
47 48 2.397549 CCGCAAAAGAAAAGCTGAAGG 58.602 47.619 0.00 0.00 0.00 3.46
49 50 1.537990 GGCCGCAAAAGAAAAGCTGAA 60.538 47.619 0.00 0.00 0.00 3.02
78 95 1.461091 AAAGTGAGACGGTCGCCTGA 61.461 55.000 9.41 0.00 36.18 3.86
84 101 1.149148 GGCTGAAAAGTGAGACGGTC 58.851 55.000 0.00 0.00 0.00 4.79
97 114 2.615493 GGTTCTCAATTCGAGGGCTGAA 60.615 50.000 5.45 0.00 42.55 3.02
111 128 1.125093 TTTCGGCCTGGAGGTTCTCA 61.125 55.000 0.00 0.00 37.57 3.27
127 144 3.869246 CAGCCATCAGCCAATCAAATTTC 59.131 43.478 0.00 0.00 45.47 2.17
143 160 2.159198 GGCGAAATTCATTGTCAGCCAT 60.159 45.455 1.83 0.00 42.57 4.40
144 161 1.202114 GGCGAAATTCATTGTCAGCCA 59.798 47.619 1.83 0.00 42.57 4.75
145 162 1.469767 GGGCGAAATTCATTGTCAGCC 60.470 52.381 0.00 0.00 42.32 4.85
146 163 1.795162 CGGGCGAAATTCATTGTCAGC 60.795 52.381 0.00 0.00 0.00 4.26
150 167 1.737793 GACTCGGGCGAAATTCATTGT 59.262 47.619 0.00 0.00 0.00 2.71
151 168 1.064060 GGACTCGGGCGAAATTCATTG 59.936 52.381 0.00 0.00 0.00 2.82
152 169 1.065418 AGGACTCGGGCGAAATTCATT 60.065 47.619 0.00 0.00 0.00 2.57
180 215 4.168014 GCGAAATTCATTGTCAGCATCAA 58.832 39.130 0.00 0.00 0.00 2.57
181 216 3.427909 GGCGAAATTCATTGTCAGCATCA 60.428 43.478 0.00 0.00 0.00 3.07
231 266 2.487746 ATGGAAGGTTTGGGTTTGGT 57.512 45.000 0.00 0.00 0.00 3.67
232 267 3.258123 CACTATGGAAGGTTTGGGTTTGG 59.742 47.826 0.00 0.00 0.00 3.28
233 268 3.258123 CCACTATGGAAGGTTTGGGTTTG 59.742 47.826 0.00 0.00 40.96 2.93
234 269 3.116900 ACCACTATGGAAGGTTTGGGTTT 60.117 43.478 0.84 0.00 40.96 3.27
235 270 2.449345 ACCACTATGGAAGGTTTGGGTT 59.551 45.455 0.84 0.00 40.96 4.11
236 271 2.070573 ACCACTATGGAAGGTTTGGGT 58.929 47.619 0.84 0.00 40.96 4.51
237 272 2.899303 ACCACTATGGAAGGTTTGGG 57.101 50.000 0.84 0.00 40.96 4.12
238 273 3.617284 GGTACCACTATGGAAGGTTTGG 58.383 50.000 7.15 0.00 40.96 3.28
253 288 6.639826 TCCTCTTGGTTTAAATTTGGGTACCA 60.640 38.462 15.35 6.24 46.83 3.25
254 289 5.776208 TCCTCTTGGTTTAAATTTGGGTACC 59.224 40.000 2.17 2.17 41.75 3.34
255 290 6.904463 TCCTCTTGGTTTAAATTTGGGTAC 57.096 37.500 0.00 0.00 34.23 3.34
256 291 9.196139 CATATCCTCTTGGTTTAAATTTGGGTA 57.804 33.333 0.00 0.00 34.23 3.69
257 292 7.898636 TCATATCCTCTTGGTTTAAATTTGGGT 59.101 33.333 0.00 0.00 34.23 4.51
258 293 8.305046 TCATATCCTCTTGGTTTAAATTTGGG 57.695 34.615 0.00 0.00 34.23 4.12
259 294 9.586435 GTTCATATCCTCTTGGTTTAAATTTGG 57.414 33.333 0.00 0.00 34.23 3.28
260 295 9.586435 GGTTCATATCCTCTTGGTTTAAATTTG 57.414 33.333 0.00 0.00 34.23 2.32
261 296 9.547279 AGGTTCATATCCTCTTGGTTTAAATTT 57.453 29.630 0.00 0.00 34.23 1.82
262 297 8.971073 CAGGTTCATATCCTCTTGGTTTAAATT 58.029 33.333 0.00 0.00 32.37 1.82
263 298 7.561356 CCAGGTTCATATCCTCTTGGTTTAAAT 59.439 37.037 0.00 0.00 32.37 1.40
264 299 6.889722 CCAGGTTCATATCCTCTTGGTTTAAA 59.110 38.462 0.00 0.00 32.37 1.52
265 300 6.011981 ACCAGGTTCATATCCTCTTGGTTTAA 60.012 38.462 0.00 0.00 32.37 1.52
266 301 5.491078 ACCAGGTTCATATCCTCTTGGTTTA 59.509 40.000 0.00 0.00 32.37 2.01
267 302 4.292306 ACCAGGTTCATATCCTCTTGGTTT 59.708 41.667 0.00 0.00 32.37 3.27
268 303 3.852578 ACCAGGTTCATATCCTCTTGGTT 59.147 43.478 0.00 0.00 32.37 3.67
315 350 2.999355 GAGGAACTGAGATGACAGCAAC 59.001 50.000 0.00 0.00 41.55 4.17
323 358 1.914634 CGAACGGAGGAACTGAGATG 58.085 55.000 0.00 0.00 41.55 2.90
358 407 6.106877 TCTCGGAAATGTTTGATCGAATTC 57.893 37.500 0.00 0.00 0.00 2.17
363 412 2.672874 TGCTCTCGGAAATGTTTGATCG 59.327 45.455 0.00 0.00 0.00 3.69
399 448 1.332997 GCTGCTCATGGTAACTGCATC 59.667 52.381 0.00 0.00 33.02 3.91
457 506 2.844195 TTGCCACCATCCACCAGCT 61.844 57.895 0.00 0.00 0.00 4.24
460 509 0.899253 CATGTTGCCACCATCCACCA 60.899 55.000 0.00 0.00 0.00 4.17
461 510 0.611618 TCATGTTGCCACCATCCACC 60.612 55.000 0.00 0.00 0.00 4.61
462 511 0.813184 CTCATGTTGCCACCATCCAC 59.187 55.000 0.00 0.00 0.00 4.02
463 512 0.966875 GCTCATGTTGCCACCATCCA 60.967 55.000 0.00 0.00 0.00 3.41
464 513 0.682209 AGCTCATGTTGCCACCATCC 60.682 55.000 9.19 0.00 0.00 3.51
465 514 1.672881 GTAGCTCATGTTGCCACCATC 59.327 52.381 0.00 0.00 0.00 3.51
466 515 1.683011 GGTAGCTCATGTTGCCACCAT 60.683 52.381 19.21 3.17 40.89 3.55
577 638 1.203994 GGAATCATGCTGCAAAGTGCT 59.796 47.619 6.36 0.00 45.31 4.40
578 639 1.203994 AGGAATCATGCTGCAAAGTGC 59.796 47.619 6.36 2.69 45.29 4.40
596 674 2.011947 CATGCATGAGTGGTGTGTAGG 58.988 52.381 22.59 0.00 0.00 3.18
629 707 3.081804 CCCAATCTGTTACGCCTTTCTT 58.918 45.455 0.00 0.00 0.00 2.52
678 1868 1.065701 CTAGCTAGCCACGTACCACTG 59.934 57.143 12.13 0.00 0.00 3.66
679 1869 1.340795 ACTAGCTAGCCACGTACCACT 60.341 52.381 20.91 0.00 0.00 4.00
681 1871 1.100510 CACTAGCTAGCCACGTACCA 58.899 55.000 20.91 0.00 0.00 3.25
682 1872 0.248949 GCACTAGCTAGCCACGTACC 60.249 60.000 20.91 0.00 37.91 3.34
683 1873 3.253416 GCACTAGCTAGCCACGTAC 57.747 57.895 20.91 0.00 37.91 3.67
754 1963 9.238368 CTCCTGTTATCACCTTTTTAATGGTTA 57.762 33.333 0.00 0.00 34.54 2.85
755 1964 7.178451 CCTCCTGTTATCACCTTTTTAATGGTT 59.822 37.037 0.00 0.00 34.54 3.67
756 1965 6.663523 CCTCCTGTTATCACCTTTTTAATGGT 59.336 38.462 0.00 0.00 36.95 3.55
757 1966 6.405842 GCCTCCTGTTATCACCTTTTTAATGG 60.406 42.308 0.00 0.00 0.00 3.16
773 1982 2.526873 ACCACCTCGCCTCCTGTT 60.527 61.111 0.00 0.00 0.00 3.16
914 2124 1.336240 GCCACTAGCTTTTGGTTGCAG 60.336 52.381 13.38 0.00 38.99 4.41
915 2125 0.673437 GCCACTAGCTTTTGGTTGCA 59.327 50.000 13.38 0.00 38.99 4.08
946 2156 1.070758 AGATATGACCGGACATGTGGC 59.929 52.381 26.50 11.10 0.00 5.01
958 2168 7.043788 CGCTGCACACATATATACAGATATGAC 60.044 40.741 10.09 0.00 40.75 3.06
965 2175 2.413112 GGCGCTGCACACATATATACAG 59.587 50.000 7.64 0.00 0.00 2.74
985 2195 2.036098 TCCAATGCAGGCACAGGG 59.964 61.111 12.24 7.44 0.00 4.45
1028 2238 2.878406 GCCTTCTCTGTACAGTTTGCAA 59.122 45.455 21.99 0.00 0.00 4.08
1029 2239 2.158827 TGCCTTCTCTGTACAGTTTGCA 60.159 45.455 21.99 19.35 0.00 4.08
1035 2245 2.762887 TCTCCATGCCTTCTCTGTACAG 59.237 50.000 17.17 17.17 0.00 2.74
1038 2248 2.392662 CCTCTCCATGCCTTCTCTGTA 58.607 52.381 0.00 0.00 0.00 2.74
1039 2249 1.202330 CCTCTCCATGCCTTCTCTGT 58.798 55.000 0.00 0.00 0.00 3.41
1040 2250 0.469070 CCCTCTCCATGCCTTCTCTG 59.531 60.000 0.00 0.00 0.00 3.35
1068 2299 2.685388 TCTCGTTCAGCTCATACTCTGG 59.315 50.000 0.00 0.00 0.00 3.86
1097 2328 4.465512 GAGCCATGCAACGTGCCG 62.466 66.667 0.00 0.00 44.23 5.69
1265 2496 5.420725 TTTTCAGCACTATCTGGCTTCTA 57.579 39.130 0.00 0.00 38.56 2.10
1266 2497 3.988976 TTTCAGCACTATCTGGCTTCT 57.011 42.857 0.00 0.00 38.56 2.85
1268 2499 4.655963 TCTTTTTCAGCACTATCTGGCTT 58.344 39.130 0.00 0.00 38.56 4.35
1270 2501 4.637534 TCATCTTTTTCAGCACTATCTGGC 59.362 41.667 0.00 0.00 34.91 4.85
1271 2502 6.017275 GGATCATCTTTTTCAGCACTATCTGG 60.017 42.308 0.00 0.00 34.91 3.86
1272 2503 6.541278 TGGATCATCTTTTTCAGCACTATCTG 59.459 38.462 0.00 0.00 35.46 2.90
1273 2504 6.656902 TGGATCATCTTTTTCAGCACTATCT 58.343 36.000 0.00 0.00 0.00 1.98
1274 2505 6.932356 TGGATCATCTTTTTCAGCACTATC 57.068 37.500 0.00 0.00 0.00 2.08
1276 2507 7.177216 ACATTTGGATCATCTTTTTCAGCACTA 59.823 33.333 0.00 0.00 0.00 2.74
1295 2540 7.535940 GTCATTGATTTTGAATGCAACATTTGG 59.464 33.333 0.00 0.00 32.79 3.28
1314 2559 6.108687 CCAGCACTCAGTTAATAGTCATTGA 58.891 40.000 0.00 0.00 0.00 2.57
1319 2564 3.198872 GGCCAGCACTCAGTTAATAGTC 58.801 50.000 0.00 0.00 0.00 2.59
1320 2565 2.418746 CGGCCAGCACTCAGTTAATAGT 60.419 50.000 2.24 0.00 0.00 2.12
1323 2568 0.613260 TCGGCCAGCACTCAGTTAAT 59.387 50.000 2.24 0.00 0.00 1.40
1324 2569 0.613260 ATCGGCCAGCACTCAGTTAA 59.387 50.000 2.24 0.00 0.00 2.01
1329 2574 0.461548 CTCTAATCGGCCAGCACTCA 59.538 55.000 2.24 0.00 0.00 3.41
1341 2586 5.199024 TCTCATGCAGAGCTTCTCTAATC 57.801 43.478 7.94 0.00 44.35 1.75
1342 2587 5.358922 GTTCTCATGCAGAGCTTCTCTAAT 58.641 41.667 7.94 0.00 44.35 1.73
1351 2596 1.859703 CTCATCGTTCTCATGCAGAGC 59.140 52.381 7.94 0.00 44.35 4.09
1352 2597 3.066481 TCTCTCATCGTTCTCATGCAGAG 59.934 47.826 0.00 0.00 46.14 3.35
1424 2669 4.067896 AGAGCACGTTCAACATCAAGAAT 58.932 39.130 0.00 0.00 0.00 2.40
1533 2778 1.746991 GCCCCGGAAGAAGCAGAAG 60.747 63.158 0.73 0.00 0.00 2.85
1635 2880 3.238497 CGGTGGGTGTGAGGGTCA 61.238 66.667 0.00 0.00 0.00 4.02
1694 2939 3.677121 CCGTCTTGAGTTCATTGTGAGAG 59.323 47.826 0.00 0.00 0.00 3.20
1704 2953 3.997021 ACATGTCATTCCGTCTTGAGTTC 59.003 43.478 0.00 0.00 0.00 3.01
1715 2964 7.596494 TCAGAAATTCAGAAACATGTCATTCC 58.404 34.615 0.00 0.00 0.00 3.01
1721 2970 7.775120 ACACTTTCAGAAATTCAGAAACATGT 58.225 30.769 9.08 12.40 30.43 3.21
1724 2973 8.055279 AGAACACTTTCAGAAATTCAGAAACA 57.945 30.769 9.08 0.00 30.43 2.83
1725 2974 8.801913 CAAGAACACTTTCAGAAATTCAGAAAC 58.198 33.333 9.08 1.20 30.43 2.78
1753 3002 3.084039 TGCCCTTGATGTAGCTGAAAAG 58.916 45.455 0.00 0.00 0.00 2.27
1815 3064 9.281371 GAACCAAGTTAATTTACCTTGTAGACT 57.719 33.333 11.37 0.00 35.02 3.24
1850 3099 3.703001 ATGTTGATCGGACTGGTTCTT 57.297 42.857 1.43 0.00 0.00 2.52
1860 3109 2.286595 CCGATGCAGAAATGTTGATCGG 60.287 50.000 0.00 0.00 44.45 4.18
1861 3110 2.609002 TCCGATGCAGAAATGTTGATCG 59.391 45.455 0.00 0.00 34.01 3.69
1865 3114 4.424061 TCTTTCCGATGCAGAAATGTTG 57.576 40.909 0.00 0.00 33.01 3.33
2328 3577 1.586154 GAACTGCAACCGACATGGGG 61.586 60.000 0.00 0.00 44.64 4.96
2380 3658 0.589708 CCGCATGCACATCACCATAG 59.410 55.000 19.57 0.00 0.00 2.23
2567 3845 2.125391 GGAGCTGATGTCGCTGCA 60.125 61.111 0.00 0.00 44.10 4.41
2581 3859 4.020617 TGCGCCTTCACCTGGGAG 62.021 66.667 4.18 0.00 0.00 4.30
2642 3920 2.726274 GGCGGGTATGTCGTCGAT 59.274 61.111 0.00 0.00 0.00 3.59
2662 3940 1.450312 CAGCACCTTGGATCGGACC 60.450 63.158 0.00 0.00 0.00 4.46
2677 3955 2.338785 GCCTGAAGCCCTGAACAGC 61.339 63.158 0.00 0.00 34.35 4.40
2718 3999 9.612066 TGATTAAAGTTGCTCCAAAAAGAAAAT 57.388 25.926 0.00 0.00 0.00 1.82
2719 4000 9.097257 CTGATTAAAGTTGCTCCAAAAAGAAAA 57.903 29.630 0.00 0.00 0.00 2.29
2720 4001 8.257306 ACTGATTAAAGTTGCTCCAAAAAGAAA 58.743 29.630 0.00 0.00 0.00 2.52
2722 4003 7.346751 ACTGATTAAAGTTGCTCCAAAAAGA 57.653 32.000 0.00 0.00 0.00 2.52
2724 4005 8.037758 TCAAACTGATTAAAGTTGCTCCAAAAA 58.962 29.630 0.00 0.00 40.28 1.94
2725 4006 7.551585 TCAAACTGATTAAAGTTGCTCCAAAA 58.448 30.769 0.00 0.00 40.28 2.44
2726 4007 7.106439 TCAAACTGATTAAAGTTGCTCCAAA 57.894 32.000 0.00 0.00 40.28 3.28
2728 4009 5.278463 GCTCAAACTGATTAAAGTTGCTCCA 60.278 40.000 0.00 0.00 40.28 3.86
2729 4010 5.157067 GCTCAAACTGATTAAAGTTGCTCC 58.843 41.667 0.00 0.00 40.28 4.70
2733 4014 8.819974 ACAAAATGCTCAAACTGATTAAAGTTG 58.180 29.630 0.00 0.00 40.28 3.16
2740 4021 9.986833 GTTTAAAACAAAATGCTCAAACTGATT 57.013 25.926 0.00 0.00 0.00 2.57
2743 4024 9.476761 GAAGTTTAAAACAAAATGCTCAAACTG 57.523 29.630 0.00 0.00 35.71 3.16
2764 4046 2.633481 GGTACAGTGTCTGGGAGAAGTT 59.367 50.000 0.00 0.00 35.51 2.66
2767 4049 2.248248 CAGGTACAGTGTCTGGGAGAA 58.752 52.381 0.00 0.00 35.51 2.87
2772 4054 2.767505 GTTTCCAGGTACAGTGTCTGG 58.232 52.381 20.20 20.20 46.91 3.86
2790 4072 1.021968 GGTGCACTTTTGAGACCGTT 58.978 50.000 17.98 0.00 0.00 4.44
2966 4248 2.442413 TGCTCCAAAATAACTTCCCCG 58.558 47.619 0.00 0.00 0.00 5.73
2996 4278 5.072193 TGCCACAATGTATATCTGATCCACT 59.928 40.000 0.00 0.00 0.00 4.00
3054 4339 6.831353 TGTGTTTTCTCTTGGTTTATGGAGAA 59.169 34.615 0.00 0.00 41.26 2.87
3078 4367 5.078411 AGGTCAGTAATACAGCAGAGTTG 57.922 43.478 0.00 0.00 0.00 3.16
3085 4374 4.473477 AGGTGAAGGTCAGTAATACAGC 57.527 45.455 0.00 0.00 0.00 4.40
3114 4403 4.163078 ACTCTTCCTGTAAGATCACATGGG 59.837 45.833 0.00 0.00 43.32 4.00
3397 4686 2.986479 GCCAATCTTTTTGCGTCGAAAT 59.014 40.909 0.00 0.00 0.00 2.17
3398 4687 2.389998 GCCAATCTTTTTGCGTCGAAA 58.610 42.857 0.00 0.00 0.00 3.46
3412 4701 1.668419 ATGCTTCAGTACCGCCAATC 58.332 50.000 0.00 0.00 0.00 2.67
3413 4702 2.128771 AATGCTTCAGTACCGCCAAT 57.871 45.000 0.00 0.00 0.00 3.16
3415 4704 1.003118 AGAAATGCTTCAGTACCGCCA 59.997 47.619 0.00 0.00 33.64 5.69
3416 4705 1.739067 AGAAATGCTTCAGTACCGCC 58.261 50.000 0.00 0.00 33.64 6.13
3454 4743 1.777272 AGTTGCTTCCCCTTTGACTCT 59.223 47.619 0.00 0.00 0.00 3.24
3518 4807 3.424703 CATTGTTGACTCCAAGGACCAT 58.575 45.455 0.00 0.00 32.06 3.55
3556 4845 3.193691 TCAAGCCTTTCAACCGAAACAAA 59.806 39.130 0.00 0.00 36.19 2.83
3643 4932 6.578163 TTTGACTGATGATTGATCTGCAAA 57.422 33.333 0.00 0.00 40.48 3.68
3670 4962 4.081420 AGTTAGCATGTGGAACTCCTGTAG 60.081 45.833 0.00 0.00 38.04 2.74
3722 5014 8.043113 ACTGTGCAAATAGAATCTTGACTGATA 58.957 33.333 0.00 0.00 0.00 2.15
3835 5127 1.221466 TTGACGTTTGCTCCTCGCTG 61.221 55.000 0.00 0.00 40.11 5.18
3885 5469 8.345565 ACTGTTTTGAACTGCTTCTGTAAATAG 58.654 33.333 0.00 0.00 34.11 1.73
3886 5470 8.220755 ACTGTTTTGAACTGCTTCTGTAAATA 57.779 30.769 0.00 0.00 34.11 1.40
3888 5472 6.509418 ACTGTTTTGAACTGCTTCTGTAAA 57.491 33.333 0.00 0.00 34.11 2.01
3889 5473 6.821665 ACTACTGTTTTGAACTGCTTCTGTAA 59.178 34.615 0.00 0.00 34.11 2.41
3890 5474 6.346096 ACTACTGTTTTGAACTGCTTCTGTA 58.654 36.000 0.00 0.00 34.11 2.74
3891 5475 5.186198 ACTACTGTTTTGAACTGCTTCTGT 58.814 37.500 0.00 0.00 34.11 3.41
3892 5476 5.741388 ACTACTGTTTTGAACTGCTTCTG 57.259 39.130 0.00 0.00 34.11 3.02
3897 5481 6.080406 GCTTCATACTACTGTTTTGAACTGC 58.920 40.000 0.00 0.00 34.11 4.40
3907 5491 6.645415 GTGTGTTAGTTGCTTCATACTACTGT 59.355 38.462 0.00 0.00 0.00 3.55
3910 5494 6.422701 TGTGTGTGTTAGTTGCTTCATACTAC 59.577 38.462 0.00 0.00 0.00 2.73
3913 5497 5.666969 TGTGTGTGTTAGTTGCTTCATAC 57.333 39.130 0.00 0.00 0.00 2.39
3914 5498 6.147656 CAGATGTGTGTGTTAGTTGCTTCATA 59.852 38.462 0.00 0.00 0.00 2.15
3916 5500 4.273235 CAGATGTGTGTGTTAGTTGCTTCA 59.727 41.667 0.00 0.00 0.00 3.02
3917 5501 4.511454 TCAGATGTGTGTGTTAGTTGCTTC 59.489 41.667 0.00 0.00 0.00 3.86
3918 5502 4.450976 TCAGATGTGTGTGTTAGTTGCTT 58.549 39.130 0.00 0.00 0.00 3.91
3919 5503 4.071961 TCAGATGTGTGTGTTAGTTGCT 57.928 40.909 0.00 0.00 0.00 3.91
3920 5504 4.811555 TTCAGATGTGTGTGTTAGTTGC 57.188 40.909 0.00 0.00 0.00 4.17
3921 5505 6.142798 GCATTTTCAGATGTGTGTGTTAGTTG 59.857 38.462 0.00 0.00 0.00 3.16
3922 5506 6.183360 TGCATTTTCAGATGTGTGTGTTAGTT 60.183 34.615 0.00 0.00 0.00 2.24
3923 5507 5.299028 TGCATTTTCAGATGTGTGTGTTAGT 59.701 36.000 0.00 0.00 0.00 2.24
3924 5508 5.761003 TGCATTTTCAGATGTGTGTGTTAG 58.239 37.500 0.00 0.00 0.00 2.34
3925 5509 5.530543 TCTGCATTTTCAGATGTGTGTGTTA 59.469 36.000 0.00 0.00 38.11 2.41
3926 5510 4.338964 TCTGCATTTTCAGATGTGTGTGTT 59.661 37.500 0.00 0.00 38.11 3.32
4199 5784 0.251297 CAAACTCCACCAGCATCCCA 60.251 55.000 0.00 0.00 0.00 4.37
4217 5802 2.203337 GCCACAAGGTCAGCACCA 60.203 61.111 0.00 0.00 46.68 4.17
4332 5917 4.848757 GTTTGATGAACCTAATGATCGGC 58.151 43.478 0.00 0.00 31.85 5.54
4353 5945 3.766545 ACATGAACTACAGCCAAATGGT 58.233 40.909 0.00 0.00 37.57 3.55
4405 6019 9.153721 GATAGATGCTCTCAGAAAGAATATTGG 57.846 37.037 0.00 0.00 32.23 3.16
4433 6056 6.092670 TGCTACTTCTCTTTGAAATGAATCCG 59.907 38.462 0.00 0.00 33.79 4.18
4472 6095 3.002791 ACACTGGATACACATCTTTGCG 58.997 45.455 0.00 0.00 46.17 4.85
4490 6113 2.744202 CCTGCCATTGTTACTCTCACAC 59.256 50.000 0.00 0.00 0.00 3.82
4491 6114 2.875672 GCCTGCCATTGTTACTCTCACA 60.876 50.000 0.00 0.00 0.00 3.58
4495 6118 1.630369 TCTGCCTGCCATTGTTACTCT 59.370 47.619 0.00 0.00 0.00 3.24
4514 6137 0.099436 GACATGCCATCCGTTTGCTC 59.901 55.000 0.00 0.00 0.00 4.26
4554 6178 6.473758 GTGAAAACCCACCTCTCTAGTAATT 58.526 40.000 0.00 0.00 0.00 1.40
4561 6185 0.250338 GCGTGAAAACCCACCTCTCT 60.250 55.000 0.00 0.00 33.67 3.10
4562 6186 0.250338 AGCGTGAAAACCCACCTCTC 60.250 55.000 0.00 0.00 33.67 3.20
4624 6248 9.958180 TGGTTCATAATGAAATCTCTACAAAGA 57.042 29.630 0.00 0.00 38.22 2.52
4625 6249 9.994432 GTGGTTCATAATGAAATCTCTACAAAG 57.006 33.333 0.00 0.00 38.22 2.77
4626 6250 9.513906 TGTGGTTCATAATGAAATCTCTACAAA 57.486 29.630 0.00 0.00 38.22 2.83
4627 6251 9.685276 ATGTGGTTCATAATGAAATCTCTACAA 57.315 29.630 0.00 0.00 38.22 2.41
4631 6255 9.334947 CTGTATGTGGTTCATAATGAAATCTCT 57.665 33.333 0.00 0.00 38.22 3.10
4632 6256 9.330063 TCTGTATGTGGTTCATAATGAAATCTC 57.670 33.333 0.00 0.00 38.22 2.75
4633 6257 9.857656 ATCTGTATGTGGTTCATAATGAAATCT 57.142 29.630 0.00 0.00 38.22 2.40
4634 6258 9.888878 CATCTGTATGTGGTTCATAATGAAATC 57.111 33.333 0.00 0.00 38.22 2.17
4635 6259 9.412460 ACATCTGTATGTGGTTCATAATGAAAT 57.588 29.630 0.00 0.00 44.79 2.17
4636 6260 8.806429 ACATCTGTATGTGGTTCATAATGAAA 57.194 30.769 0.00 0.00 44.79 2.69
4645 6269 9.307121 GCATCTATATACATCTGTATGTGGTTC 57.693 37.037 12.10 0.75 45.99 3.62
4646 6270 8.815912 TGCATCTATATACATCTGTATGTGGTT 58.184 33.333 12.10 1.86 45.99 3.67
4647 6271 8.366359 TGCATCTATATACATCTGTATGTGGT 57.634 34.615 12.10 0.00 45.99 4.16
4648 6272 9.828039 AATGCATCTATATACATCTGTATGTGG 57.172 33.333 12.10 8.21 45.99 4.17
4664 6288 9.842775 TGAATCTTCACTCTAAAATGCATCTAT 57.157 29.630 0.00 0.00 31.01 1.98
4695 6319 9.470399 TCACTATGGACTACATACAGAGTAAAA 57.530 33.333 0.00 0.00 41.03 1.52
4696 6320 9.470399 TTCACTATGGACTACATACAGAGTAAA 57.530 33.333 0.00 0.00 41.03 2.01
4697 6321 9.470399 TTTCACTATGGACTACATACAGAGTAA 57.530 33.333 0.00 0.00 41.03 2.24
4698 6322 9.642343 ATTTCACTATGGACTACATACAGAGTA 57.358 33.333 0.00 0.00 41.03 2.59
4699 6323 7.956328 TTTCACTATGGACTACATACAGAGT 57.044 36.000 0.00 0.00 41.03 3.24
4700 6324 8.855110 AGATTTCACTATGGACTACATACAGAG 58.145 37.037 0.00 0.00 41.03 3.35
4701 6325 8.768501 AGATTTCACTATGGACTACATACAGA 57.231 34.615 0.00 0.00 41.03 3.41
4729 6353 9.813446 CCGTTCCTAAATACTATAAGTCTTTGT 57.187 33.333 0.00 0.00 29.19 2.83
4732 6356 8.858094 CCTCCGTTCCTAAATACTATAAGTCTT 58.142 37.037 0.00 0.00 0.00 3.01
4733 6357 7.450944 CCCTCCGTTCCTAAATACTATAAGTCT 59.549 40.741 0.00 0.00 0.00 3.24
4734 6358 7.449704 TCCCTCCGTTCCTAAATACTATAAGTC 59.550 40.741 0.00 0.00 0.00 3.01
4735 6359 7.300658 TCCCTCCGTTCCTAAATACTATAAGT 58.699 38.462 0.00 0.00 0.00 2.24
4736 6360 7.450944 ACTCCCTCCGTTCCTAAATACTATAAG 59.549 40.741 0.00 0.00 0.00 1.73
4737 6361 7.300658 ACTCCCTCCGTTCCTAAATACTATAA 58.699 38.462 0.00 0.00 0.00 0.98
4738 6362 6.856757 ACTCCCTCCGTTCCTAAATACTATA 58.143 40.000 0.00 0.00 0.00 1.31
4739 6363 5.713807 ACTCCCTCCGTTCCTAAATACTAT 58.286 41.667 0.00 0.00 0.00 2.12
4740 6364 5.134725 ACTCCCTCCGTTCCTAAATACTA 57.865 43.478 0.00 0.00 0.00 1.82
4741 6365 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
4742 6366 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
4743 6367 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4744 6368 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4745 6369 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4746 6370 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
4747 6371 3.629087 CTTTCTACTCCCTCCGTTCCTA 58.371 50.000 0.00 0.00 0.00 2.94
4748 6372 2.458620 CTTTCTACTCCCTCCGTTCCT 58.541 52.381 0.00 0.00 0.00 3.36
4749 6373 1.134759 GCTTTCTACTCCCTCCGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
4750 6374 1.549170 TGCTTTCTACTCCCTCCGTTC 59.451 52.381 0.00 0.00 0.00 3.95
4751 6375 1.640917 TGCTTTCTACTCCCTCCGTT 58.359 50.000 0.00 0.00 0.00 4.44
4752 6376 1.275573 GTTGCTTTCTACTCCCTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
4753 6377 1.275291 TGTTGCTTTCTACTCCCTCCG 59.725 52.381 0.00 0.00 0.00 4.63
4754 6378 2.567615 TCTGTTGCTTTCTACTCCCTCC 59.432 50.000 0.00 0.00 0.00 4.30
4755 6379 3.963428 TCTGTTGCTTTCTACTCCCTC 57.037 47.619 0.00 0.00 0.00 4.30
4756 6380 3.054802 CCATCTGTTGCTTTCTACTCCCT 60.055 47.826 0.00 0.00 0.00 4.20
4757 6381 3.274288 CCATCTGTTGCTTTCTACTCCC 58.726 50.000 0.00 0.00 0.00 4.30
4758 6382 2.680339 GCCATCTGTTGCTTTCTACTCC 59.320 50.000 0.00 0.00 0.00 3.85
4759 6383 2.680339 GGCCATCTGTTGCTTTCTACTC 59.320 50.000 0.00 0.00 0.00 2.59
4760 6384 2.307098 AGGCCATCTGTTGCTTTCTACT 59.693 45.455 5.01 0.00 0.00 2.57
4761 6385 2.716217 AGGCCATCTGTTGCTTTCTAC 58.284 47.619 5.01 0.00 0.00 2.59
4762 6386 3.519510 AGTAGGCCATCTGTTGCTTTCTA 59.480 43.478 5.01 0.00 0.00 2.10
4763 6387 2.307098 AGTAGGCCATCTGTTGCTTTCT 59.693 45.455 5.01 0.00 0.00 2.52
4764 6388 2.680339 GAGTAGGCCATCTGTTGCTTTC 59.320 50.000 5.01 0.00 0.00 2.62
4765 6389 2.040278 TGAGTAGGCCATCTGTTGCTTT 59.960 45.455 5.01 0.00 0.00 3.51
4766 6390 1.630369 TGAGTAGGCCATCTGTTGCTT 59.370 47.619 5.01 0.00 0.00 3.91
4767 6391 1.279496 TGAGTAGGCCATCTGTTGCT 58.721 50.000 5.01 0.00 0.00 3.91
4768 6392 2.338577 ATGAGTAGGCCATCTGTTGC 57.661 50.000 5.01 0.00 0.00 4.17
4769 6393 4.679373 AGTATGAGTAGGCCATCTGTTG 57.321 45.455 5.01 0.00 0.00 3.33
4770 6394 5.459505 AGTAGTATGAGTAGGCCATCTGTT 58.540 41.667 5.01 0.00 0.00 3.16
4771 6395 5.068215 AGTAGTATGAGTAGGCCATCTGT 57.932 43.478 5.01 0.00 0.00 3.41
4794 6418 4.641989 CGGGTAGTACTGTACTATGTTGGT 59.358 45.833 25.61 4.50 42.68 3.67
4885 6511 0.608130 GGCTTGGGTTCAAACATCCC 59.392 55.000 0.00 0.00 41.41 3.85
5068 6702 3.676093 TCTGACTCGATATAGCGGTGAT 58.324 45.455 10.94 0.00 0.00 3.06
5158 6792 1.577468 CAAGTGTGTTGGCGTGACTA 58.423 50.000 0.00 0.00 0.00 2.59
5246 6880 3.276846 AAGTGTGCCGGTTGCGAC 61.277 61.111 1.90 0.00 45.60 5.19
5248 6882 4.326766 CCAAGTGTGCCGGTTGCG 62.327 66.667 1.90 0.00 45.60 4.85
5288 6922 2.283173 GGTGGCAAAGAGGGTGGG 60.283 66.667 0.00 0.00 0.00 4.61
5312 6946 2.117156 CCGGCCAATGCTCAAGGAG 61.117 63.158 2.24 0.00 37.74 3.69
5359 6993 2.169769 CCCAAGGAAGATTACTACGCCA 59.830 50.000 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.