AutoCloner

Multiple sequence alignment - TraesCS2A01G312500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G312500	chr2A	100.000	1913	0	0	868	2780	537010297	537008385	0.000000e+00	3533
1	TraesCS2A01G312500	chr2A	82.507	1149	189	11	873	2016	417092616	417093757	0.000000e+00	998
2	TraesCS2A01G312500	chr2A	100.000	60	0	0	1	60	537011164	537011105	8.140000e-21	111
3	TraesCS2A01G312500	chr6D	88.683	1131	123	5	873	2001	144060120	144058993	0.000000e+00	1375
4	TraesCS2A01G312500	chr4A	85.547	1197	165	7	868	2057	384351904	384353099	0.000000e+00	1245
5	TraesCS2A01G312500	chr4A	86.372	1064	143	2	868	1930	384333659	384334721	0.000000e+00	1160
6	TraesCS2A01G312500	chr4A	86.523	742	89	7	2049	2780	384353313	384354053	0.000000e+00	806
7	TraesCS2A01G312500	chr3A	88.327	1028	118	2	873	1899	308702406	308701380	0.000000e+00	1232
8	TraesCS2A01G312500	chr7B	84.917	1147	165	8	869	2011	165207958	165209100	0.000000e+00	1153
9	TraesCS2A01G312500	chr7B	88.005	742	75	11	2049	2780	33601303	33602040	0.000000e+00	865
10	TraesCS2A01G312500	chr7B	86.327	746	84	11	2049	2780	606673945	606674686	0.000000e+00	797
11	TraesCS2A01G312500	chr7B	86.212	747	84	14	2049	2780	606800702	606801444	0.000000e+00	791
12	TraesCS2A01G312500	chr5D	84.220	1147	172	9	873	2016	421104205	421105345	0.000000e+00	1107
13	TraesCS2A01G312500	chr4B	83.625	1142	179	8	873	2011	82339658	82340794	0.000000e+00	1066
14	TraesCS2A01G312500	chr2B	83.772	1103	173	6	872	1972	402672435	402671337	0.000000e+00	1040
15	TraesCS2A01G312500	chr3D	84.054	740	104	11	2049	2780	324403887	324404620	0.000000e+00	701
16	TraesCS2A01G312500	chr1B	83.941	741	106	10	2049	2780	146956380	146957116	0.000000e+00	697
17	TraesCS2A01G312500	chr1B	82.996	741	112	7	2049	2780	116135439	116134704	0.000000e+00	658
18	TraesCS2A01G312500	chr7D	83.514	740	108	10	2049	2780	491770903	491771636	0.000000e+00	678
19	TraesCS2A01G312500	chr1D	83.131	741	102	20	2049	2780	111972923	111973649	0.000000e+00	654

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G312500	chr2A	537008385	537011164	2779	True	1822.0	3533	100.000	1	2780	2	chr2A.!!$R1	2779
1	TraesCS2A01G312500	chr2A	417092616	417093757	1141	False	998.0	998	82.507	873	2016	1	chr2A.!!$F1	1143
2	TraesCS2A01G312500	chr6D	144058993	144060120	1127	True	1375.0	1375	88.683	873	2001	1	chr6D.!!$R1	1128
3	TraesCS2A01G312500	chr4A	384333659	384334721	1062	False	1160.0	1160	86.372	868	1930	1	chr4A.!!$F1	1062
4	TraesCS2A01G312500	chr4A	384351904	384354053	2149	False	1025.5	1245	86.035	868	2780	2	chr4A.!!$F2	1912
5	TraesCS2A01G312500	chr3A	308701380	308702406	1026	True	1232.0	1232	88.327	873	1899	1	chr3A.!!$R1	1026
6	TraesCS2A01G312500	chr7B	165207958	165209100	1142	False	1153.0	1153	84.917	869	2011	1	chr7B.!!$F2	1142
7	TraesCS2A01G312500	chr7B	33601303	33602040	737	False	865.0	865	88.005	2049	2780	1	chr7B.!!$F1	731
8	TraesCS2A01G312500	chr7B	606673945	606674686	741	False	797.0	797	86.327	2049	2780	1	chr7B.!!$F3	731
9	TraesCS2A01G312500	chr7B	606800702	606801444	742	False	791.0	791	86.212	2049	2780	1	chr7B.!!$F4	731
10	TraesCS2A01G312500	chr5D	421104205	421105345	1140	False	1107.0	1107	84.220	873	2016	1	chr5D.!!$F1	1143
11	TraesCS2A01G312500	chr4B	82339658	82340794	1136	False	1066.0	1066	83.625	873	2011	1	chr4B.!!$F1	1138
12	TraesCS2A01G312500	chr2B	402671337	402672435	1098	True	1040.0	1040	83.772	872	1972	1	chr2B.!!$R1	1100
13	TraesCS2A01G312500	chr3D	324403887	324404620	733	False	701.0	701	84.054	2049	2780	1	chr3D.!!$F1	731
14	TraesCS2A01G312500	chr1B	146956380	146957116	736	False	697.0	697	83.941	2049	2780	1	chr1B.!!$F1	731
15	TraesCS2A01G312500	chr1B	116134704	116135439	735	True	658.0	658	82.996	2049	2780	1	chr1B.!!$R1	731
16	TraesCS2A01G312500	chr7D	491770903	491771636	733	False	678.0	678	83.514	2049	2780	1	chr7D.!!$F1	731
17	TraesCS2A01G312500	chr1D	111972923	111973649	726	False	654.0	654	83.131	2049	2780	1	chr1D.!!$F1	731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
46	47	0.029433	GATCGCCTTTTCGCCCATTC	59.971	55.0	0.0	0.0	0.0	2.67	F
49	50	0.248621	CGCCTTTTCGCCCATTCATC	60.249	55.0	0.0	0.0	0.0	2.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1402	1404	0.035056	ACCTTGCCGAGAATCTTGGG	60.035	55.0	17.77	7.7	35.62	4.12	R
1961	1965	0.195096	AGGGTAACAGTCCAAGGGGA	59.805	55.0	0.00	0.0	39.03	4.81	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	3.771160	GGCGGTGTCCTCGGTCAT	61.771	66.667	0.00	0.00	0.00	3.06
19	20	2.509336	GCGGTGTCCTCGGTCATG	60.509	66.667	0.00	0.00	0.00	3.07
20	21	2.970639	CGGTGTCCTCGGTCATGT	59.029	61.111	0.00	0.00	0.00	3.21
21	22	1.153823	CGGTGTCCTCGGTCATGTC	60.154	63.158	0.00	0.00	0.00	3.06
22	23	1.595993	CGGTGTCCTCGGTCATGTCT	61.596	60.000	0.00	0.00	0.00	3.41
23	24	0.173708	GGTGTCCTCGGTCATGTCTC	59.826	60.000	0.00	0.00	0.00	3.36
24	25	0.179161	GTGTCCTCGGTCATGTCTCG	60.179	60.000	0.00	0.00	0.00	4.04
25	26	1.313091	TGTCCTCGGTCATGTCTCGG	61.313	60.000	0.00	0.00	0.00	4.63
26	27	2.105128	CCTCGGTCATGTCTCGGC	59.895	66.667	0.00	0.00	0.00	5.54
27	28	2.278206	CTCGGTCATGTCTCGGCG	60.278	66.667	0.00	0.00	0.00	6.46
28	29	2.748647	TCGGTCATGTCTCGGCGA	60.749	61.111	10.14	10.14	0.00	5.54
29	30	2.064723	CTCGGTCATGTCTCGGCGAT	62.065	60.000	11.27	0.00	0.00	4.58
30	31	1.658717	CGGTCATGTCTCGGCGATC	60.659	63.158	11.27	7.70	0.00	3.69
31	32	1.658717	GGTCATGTCTCGGCGATCG	60.659	63.158	11.27	11.69	40.90	3.69
32	33	2.026157	TCATGTCTCGGCGATCGC	59.974	61.111	31.52	31.52	39.05	4.58
43	44	2.817834	CGATCGCCTTTTCGCCCA	60.818	61.111	0.26	0.00	0.00	5.36
44	45	2.180204	CGATCGCCTTTTCGCCCAT	61.180	57.895	0.26	0.00	0.00	4.00
45	46	1.714899	CGATCGCCTTTTCGCCCATT	61.715	55.000	0.26	0.00	0.00	3.16
46	47	0.029433	GATCGCCTTTTCGCCCATTC	59.971	55.000	0.00	0.00	0.00	2.67
47	48	0.679640	ATCGCCTTTTCGCCCATTCA	60.680	50.000	0.00	0.00	0.00	2.57
48	49	0.679640	TCGCCTTTTCGCCCATTCAT	60.680	50.000	0.00	0.00	0.00	2.57
49	50	0.248621	CGCCTTTTCGCCCATTCATC	60.249	55.000	0.00	0.00	0.00	2.92
50	51	1.106285	GCCTTTTCGCCCATTCATCT	58.894	50.000	0.00	0.00	0.00	2.90
51	52	1.066152	GCCTTTTCGCCCATTCATCTC	59.934	52.381	0.00	0.00	0.00	2.75
52	53	1.678101	CCTTTTCGCCCATTCATCTCC	59.322	52.381	0.00	0.00	0.00	3.71
53	54	1.331756	CTTTTCGCCCATTCATCTCCG	59.668	52.381	0.00	0.00	0.00	4.63
54	55	1.095228	TTTCGCCCATTCATCTCCGC	61.095	55.000	0.00	0.00	0.00	5.54
55	56	1.971505	TTCGCCCATTCATCTCCGCT	61.972	55.000	0.00	0.00	0.00	5.52
56	57	1.524621	CGCCCATTCATCTCCGCTT	60.525	57.895	0.00	0.00	0.00	4.68
57	58	1.097547	CGCCCATTCATCTCCGCTTT	61.098	55.000	0.00	0.00	0.00	3.51
58	59	0.665298	GCCCATTCATCTCCGCTTTC	59.335	55.000	0.00	0.00	0.00	2.62
59	60	0.940126	CCCATTCATCTCCGCTTTCG	59.060	55.000	0.00	0.00	0.00	3.46
897	898	2.604686	AACTGCGGGCTCTCTGGA	60.605	61.111	0.00	0.00	0.00	3.86
918	919	3.267233	TTCCAGGTGGCATGCCCT	61.267	61.111	33.44	21.30	34.56	5.19
923	924	2.237965	AGGTGGCATGCCCTAACCA	61.238	57.895	34.28	16.28	33.53	3.67
928	929	2.516930	CATGCCCTAACCAGCCGG	60.517	66.667	0.00	0.00	38.77	6.13
1053	1055	3.742640	GCTTCTTCCATATCGAGGTGCTT	60.743	47.826	0.00	0.00	0.00	3.91
1060	1062	1.385528	TATCGAGGTGCTTGACGCTA	58.614	50.000	0.00	0.00	40.11	4.26
1341	1343	1.961277	GGTGGTTCTGGACACAGCG	60.961	63.158	0.00	0.00	44.54	5.18
1351	1353	1.517257	GACACAGCGTGGATCCTCG	60.517	63.158	27.64	27.64	37.94	4.63
1362	1364	1.826921	GATCCTCGTCACCGGCCTA	60.827	63.158	0.00	0.00	33.95	3.93
1365	1367	2.754658	CTCGTCACCGGCCTACCT	60.755	66.667	0.00	0.00	33.95	3.08
1380	1382	2.233605	TACCTGATGTTGCCCGGTCG	62.234	60.000	0.00	0.00	0.00	4.79
1446	1448	0.741574	TGGTCGACGAGCTCTCTCTC	60.742	60.000	25.62	0.08	37.19	3.20
1449	1451	1.812093	CGACGAGCTCTCTCTCCGT	60.812	63.158	12.85	2.71	37.19	4.69
1481	1483	1.165270	GTCCGGGTGAAGGTGAAATG	58.835	55.000	0.00	0.00	0.00	2.32
1509	1511	3.241530	TCCAAGCTCCGTGCCACT	61.242	61.111	0.00	0.00	44.23	4.00
1521	1523	4.012895	GCCACTGTCCGCGTGTTG	62.013	66.667	4.92	0.00	0.00	3.33
1576	1578	3.858868	GAGCCGCTGAACCACGTCA	62.859	63.158	0.00	0.00	0.00	4.35
1599	1601	2.107141	CCCCGCTTCTCCGATGAC	59.893	66.667	0.00	0.00	0.00	3.06
1643	1647	1.852157	ATGCCAACGACTCCCACCAT	61.852	55.000	0.00	0.00	0.00	3.55
1671	1675	4.451150	GCCCATCTCGCCACGACA	62.451	66.667	0.00	0.00	0.00	4.35
1706	1710	0.538516	ACGACCTGTCAGAGCACTCT	60.539	55.000	0.00	0.00	41.37	3.24
1760	1764	3.618750	GGTCGTGGTGGTTCGGGA	61.619	66.667	0.00	0.00	0.00	5.14
1787	1791	2.450243	ACCCGGGTGATGTCCTCT	59.550	61.111	29.69	0.00	0.00	3.69
1795	1799	1.305297	TGATGTCCTCTGCCCTCGT	60.305	57.895	0.00	0.00	0.00	4.18
1868	1872	1.451028	GGCCAGTGACATCTCCAGC	60.451	63.158	0.00	0.00	0.00	4.85
1892	1896	2.262915	CTGCTCGTTCTTCCGCCT	59.737	61.111	0.00	0.00	0.00	5.52
1939	1943	2.681778	CGCCCAGACCCAGACTCT	60.682	66.667	0.00	0.00	0.00	3.24
1940	1944	2.716017	CGCCCAGACCCAGACTCTC	61.716	68.421	0.00	0.00	0.00	3.20
1972	1978	1.229658	CCTCACCTCCCCTTGGACT	60.230	63.158	0.00	0.00	35.03	3.85
1974	1980	0.838122	CTCACCTCCCCTTGGACTGT	60.838	60.000	0.00	0.00	35.03	3.55
1976	1982	1.132657	TCACCTCCCCTTGGACTGTTA	60.133	52.381	0.00	0.00	35.03	2.41
2040	2050	4.320456	CACTGCTGCCCGTCCACT	62.320	66.667	0.00	0.00	0.00	4.00
2183	2420	1.167781	TCGGTTGTTCCTTTTCCGCC	61.168	55.000	0.00	0.00	40.81	6.13
2189	2426	3.495434	TGTTCCTTTTCCGCCTTAGAA	57.505	42.857	0.00	0.00	0.00	2.10
2240	2477	1.432251	CACGGACTCGGCTATCGTT	59.568	57.895	0.00	0.00	41.39	3.85
2247	2484	1.822990	ACTCGGCTATCGTTTTCAGGA	59.177	47.619	0.00	0.00	40.32	3.86
2253	2490	4.200092	GGCTATCGTTTTCAGGAGGAAAT	58.800	43.478	0.00	0.00	44.59	2.17
2254	2491	4.273724	GGCTATCGTTTTCAGGAGGAAATC	59.726	45.833	0.00	0.00	44.59	2.17
2314	2553	3.128589	GCGAGATTTTGGATGGCAAACTA	59.871	43.478	0.00	0.00	0.00	2.24
2496	2743	2.050985	GATGGCGGCTTAATGCGC	60.051	61.111	11.43	0.00	44.05	6.09
2505	2752	0.727398	GCTTAATGCGCGTCCTCTTT	59.273	50.000	8.43	0.00	0.00	2.52
2508	2755	2.087501	TAATGCGCGTCCTCTTTTGA	57.912	45.000	8.43	0.00	0.00	2.69
2592	2839	4.811969	ACACATTGACATCATTGCCATT	57.188	36.364	4.14	0.00	32.23	3.16
2593	2840	5.918426	ACACATTGACATCATTGCCATTA	57.082	34.783	4.14	0.00	32.23	1.90
2652	2899	2.959707	CGATAGTCTTAGCCCTCACCTT	59.040	50.000	0.00	0.00	0.00	3.50

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	3.771160	ATGACCGAGGACACCGCC	61.771	66.667	0.00	0.00	0.00	6.13
2	3	2.509336	CATGACCGAGGACACCGC	60.509	66.667	0.00	0.00	0.00	5.68
3	4	1.153823	GACATGACCGAGGACACCG	60.154	63.158	0.00	0.00	0.00	4.94
4	5	0.173708	GAGACATGACCGAGGACACC	59.826	60.000	0.00	0.00	0.00	4.16
5	6	0.179161	CGAGACATGACCGAGGACAC	60.179	60.000	0.00	0.00	0.00	3.67
6	7	1.313091	CCGAGACATGACCGAGGACA	61.313	60.000	0.00	0.00	0.00	4.02
7	8	1.433879	CCGAGACATGACCGAGGAC	59.566	63.158	0.00	0.00	0.00	3.85
8	9	2.415608	GCCGAGACATGACCGAGGA	61.416	63.158	0.00	0.00	0.00	3.71
9	10	2.105128	GCCGAGACATGACCGAGG	59.895	66.667	0.00	0.00	0.00	4.63
10	11	2.064723	ATCGCCGAGACATGACCGAG	62.065	60.000	0.00	0.00	0.00	4.63
11	12	2.060004	GATCGCCGAGACATGACCGA	62.060	60.000	0.00	0.00	0.00	4.69
12	13	1.658717	GATCGCCGAGACATGACCG	60.659	63.158	0.00	0.00	0.00	4.79
13	14	1.658717	CGATCGCCGAGACATGACC	60.659	63.158	0.26	0.00	41.76	4.02
14	15	2.296480	GCGATCGCCGAGACATGAC	61.296	63.158	29.48	0.00	41.76	3.06
15	16	2.026157	GCGATCGCCGAGACATGA	59.974	61.111	29.48	0.00	41.76	3.07
31	32	1.066152	GAGATGAATGGGCGAAAAGGC	59.934	52.381	0.00	0.00	45.91	4.35
32	33	1.678101	GGAGATGAATGGGCGAAAAGG	59.322	52.381	0.00	0.00	0.00	3.11
33	34	1.331756	CGGAGATGAATGGGCGAAAAG	59.668	52.381	0.00	0.00	0.00	2.27
34	35	1.378531	CGGAGATGAATGGGCGAAAA	58.621	50.000	0.00	0.00	0.00	2.29
35	36	1.095228	GCGGAGATGAATGGGCGAAA	61.095	55.000	0.00	0.00	0.00	3.46
36	37	1.523711	GCGGAGATGAATGGGCGAA	60.524	57.895	0.00	0.00	0.00	4.70
37	38	1.971505	AAGCGGAGATGAATGGGCGA	61.972	55.000	0.00	0.00	0.00	5.54
38	39	1.097547	AAAGCGGAGATGAATGGGCG	61.098	55.000	0.00	0.00	0.00	6.13
39	40	0.665298	GAAAGCGGAGATGAATGGGC	59.335	55.000	0.00	0.00	0.00	5.36
40	41	0.940126	CGAAAGCGGAGATGAATGGG	59.060	55.000	0.00	0.00	0.00	4.00
867	868	1.221466	CGCAGTTGAAGCACGAAGGA	61.221	55.000	0.00	0.00	0.00	3.36
868	869	1.205064	CGCAGTTGAAGCACGAAGG	59.795	57.895	0.00	0.00	0.00	3.46
869	870	1.205064	CCGCAGTTGAAGCACGAAG	59.795	57.895	0.00	0.00	0.00	3.79
870	871	2.250939	CCCGCAGTTGAAGCACGAA	61.251	57.895	0.00	0.00	0.00	3.85
897	898	1.604593	GCATGCCACCTGGAAGTGT	60.605	57.895	6.36	0.00	35.93	3.55
928	929	2.143925	GTCCTTGCAGAGGTAACACAC	58.856	52.381	12.71	2.22	46.39	3.82
933	934	1.902508	CCAGAGTCCTTGCAGAGGTAA	59.097	52.381	12.71	0.00	46.39	2.85
1053	1055	3.138798	GAGGGCGGAGTAGCGTCA	61.139	66.667	0.00	0.00	38.18	4.35
1087	1089	2.022129	CGCCCACGACAGAGACAAC	61.022	63.158	0.00	0.00	43.93	3.32
1194	1196	2.280592	ACCACCGTGAAGGCGTTC	60.281	61.111	12.18	12.18	46.52	3.95
1198	1200	1.671379	GGAAGACCACCGTGAAGGC	60.671	63.158	0.00	0.00	46.52	4.35
1251	1253	1.133513	AGAACCAAGGTGATGTTGCCA	60.134	47.619	0.00	0.00	0.00	4.92
1288	1290	0.108615	CACTTCGGCTCGGAGATGTT	60.109	55.000	9.69	0.00	35.79	2.71
1325	1327	1.227527	CACGCTGTGTCCAGAACCA	60.228	57.895	0.00	0.00	41.50	3.67
1351	1353	1.144057	CATCAGGTAGGCCGGTGAC	59.856	63.158	1.90	0.00	40.50	3.67
1362	1364	2.351276	GACCGGGCAACATCAGGT	59.649	61.111	0.00	0.00	38.00	4.00
1365	1367	3.309436	CTCCGACCGGGCAACATCA	62.309	63.158	8.76	0.00	39.74	3.07
1386	1388	1.146041	GGGCATACTGCGGATGACA	59.854	57.895	0.00	0.00	46.21	3.58
1402	1404	0.035056	ACCTTGCCGAGAATCTTGGG	60.035	55.000	17.77	7.70	35.62	4.12
1410	1412	2.847234	ACCACCACCTTGCCGAGA	60.847	61.111	0.00	0.00	0.00	4.04
1446	1448	0.756070	GGACCTCCTCCTCCTTACGG	60.756	65.000	0.00	0.00	35.89	4.02
1449	1451	1.619143	CCGGACCTCCTCCTCCTTA	59.381	63.158	0.00	0.00	36.80	2.69
1509	1511	1.716760	GTTGAACAACACGCGGACA	59.283	52.632	12.47	0.00	40.84	4.02
1521	1523	0.505655	CGAAACCCTCGTCGTTGAAC	59.494	55.000	0.00	0.00	42.89	3.18
1619	1622	1.745489	GGAGTCGTTGGCATCACCC	60.745	63.158	0.00	0.00	37.83	4.61
1629	1633	2.978824	CCGATGGTGGGAGTCGTT	59.021	61.111	0.00	0.00	33.77	3.85
1671	1675	3.368571	GTCGTCGTCCTCCGGGTT	61.369	66.667	0.00	0.00	37.11	4.11
1780	1784	2.997315	CCACGAGGGCAGAGGACA	60.997	66.667	0.00	0.00	0.00	4.02
1849	1853	1.908340	GCTGGAGATGTCACTGGCCT	61.908	60.000	3.32	0.00	0.00	5.19
1868	1872	3.883744	AAGAACGAGCAGGCCCACG	62.884	63.158	0.00	2.69	0.00	4.94
1930	1934	2.063378	GGGCTCAGGAGAGTCTGGG	61.063	68.421	0.00	0.00	45.84	4.45
1933	1937	2.757917	GCGGGCTCAGGAGAGTCT	60.758	66.667	0.00	0.00	45.84	3.24
1961	1965	0.195096	AGGGTAACAGTCCAAGGGGA	59.805	55.000	0.00	0.00	39.03	4.81
1966	1970	1.675219	GCCGAGGGTAACAGTCCAA	59.325	57.895	0.00	0.00	39.74	3.53
1972	1978	4.660611	TGGGGGCCGAGGGTAACA	62.661	66.667	0.00	0.00	39.74	2.41
2024	2030	3.560251	AAGTGGACGGGCAGCAGT	61.560	61.111	0.00	0.00	0.00	4.40
2028	2038	3.052082	CAGCAAGTGGACGGGCAG	61.052	66.667	0.00	0.00	0.00	4.85
2029	2039	3.535629	CTCAGCAAGTGGACGGGCA	62.536	63.158	0.00	0.00	0.00	5.36
2030	2040	2.743928	CTCAGCAAGTGGACGGGC	60.744	66.667	0.00	0.00	0.00	6.13
2034	2044	1.364626	CGCATCCTCAGCAAGTGGAC	61.365	60.000	2.60	0.00	42.32	4.02
2035	2045	1.078918	CGCATCCTCAGCAAGTGGA	60.079	57.895	2.98	2.98	43.56	4.02
2040	2050	4.802051	GGGCCGCATCCTCAGCAA	62.802	66.667	0.00	0.00	0.00	3.91
2068	2300	2.938798	ATGGACGGGGCTGGGAAA	60.939	61.111	0.00	0.00	0.00	3.13
2183	2420	2.935676	GCCAAGGGGAACGACTTCTAAG	60.936	54.545	0.00	0.00	35.59	2.18
2189	2426	2.852075	TGGCCAAGGGGAACGACT	60.852	61.111	0.61	0.00	35.59	4.18
2240	2477	1.280998	GGGACCGATTTCCTCCTGAAA	59.719	52.381	0.00	0.00	46.54	2.69
2496	2743	2.412847	GCGGATGTTTCAAAAGAGGACG	60.413	50.000	0.00	0.00	0.00	4.79
2505	2752	1.873165	GAAGCCGCGGATGTTTCAA	59.127	52.632	33.48	0.00	0.00	2.69
2551	2798	0.179207	TCGTCACGCATGTACTCGAC	60.179	55.000	0.00	0.00	0.00	4.20
2592	2839	1.302383	CCGTGCGCATGGTTTCCTTA	61.302	55.000	35.66	0.00	32.81	2.69
2593	2840	2.625823	CCGTGCGCATGGTTTCCTT	61.626	57.895	35.66	0.00	32.81	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.