Multiple sequence alignment - TraesCS2A01G311700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G311700 chr2A 100.000 7238 0 0 1 7238 535420606 535413369 0.000000e+00 13367
1 TraesCS2A01G311700 chr2A 83.522 619 81 10 6 621 689767609 689767009 6.340000e-155 558
2 TraesCS2A01G311700 chr2A 87.313 268 27 4 2308 2573 535418154 535417892 4.240000e-77 300
3 TraesCS2A01G311700 chr2A 87.313 268 27 4 2453 2715 535418299 535418034 4.240000e-77 300
4 TraesCS2A01G311700 chr2A 79.683 315 55 6 5605 5914 1606707 1607017 1.220000e-52 219
5 TraesCS2A01G311700 chr2D 94.416 4298 185 25 2953 7237 398314983 398310728 0.000000e+00 6556
6 TraesCS2A01G311700 chr2D 91.280 1055 45 23 683 1708 398316007 398314971 0.000000e+00 1395
7 TraesCS2A01G311700 chr2D 76.383 470 96 11 6761 7218 650686219 650685753 9.380000e-59 239
8 TraesCS2A01G311700 chr2B 93.041 4340 205 39 2953 7238 470916230 470911934 0.000000e+00 6252
9 TraesCS2A01G311700 chr2B 93.261 831 34 16 891 1705 470917045 470916221 0.000000e+00 1205
10 TraesCS2A01G311700 chr2B 91.512 648 52 2 2308 2954 796672304 796672949 0.000000e+00 889
11 TraesCS2A01G311700 chr2B 90.056 533 42 6 1706 2231 796671781 796672309 0.000000e+00 680
12 TraesCS2A01G311700 chr2B 77.463 741 91 43 6208 6912 470903674 470904374 2.470000e-99 374
13 TraesCS2A01G311700 chr2B 88.660 291 27 4 2430 2715 796672281 796672570 4.160000e-92 350
14 TraesCS2A01G311700 chr2B 79.393 461 79 13 6769 7219 5731615 5731161 1.960000e-80 311
15 TraesCS2A01G311700 chr2B 78.882 322 56 8 5605 5918 357151105 357151422 2.650000e-49 207
16 TraesCS2A01G311700 chr2B 97.590 83 2 0 2228 2310 499563585 499563667 7.570000e-30 143
17 TraesCS2A01G311700 chr2B 95.506 89 4 0 2224 2312 797429613 797429701 7.570000e-30 143
18 TraesCS2A01G311700 chrUn 91.190 647 54 3 2308 2952 76617884 76618529 0.000000e+00 876
19 TraesCS2A01G311700 chrUn 88.951 534 46 8 1706 2231 76617361 76617889 0.000000e+00 647
20 TraesCS2A01G311700 chrUn 87.687 268 25 5 2308 2573 76618030 76618291 9.120000e-79 305
21 TraesCS2A01G311700 chr3B 90.123 648 55 4 2308 2954 82293878 82293239 0.000000e+00 833
22 TraesCS2A01G311700 chr3B 87.221 673 55 13 2308 2952 804812947 804812278 0.000000e+00 737
23 TraesCS2A01G311700 chr3B 88.861 395 37 4 1706 2094 804813429 804813036 5.080000e-131 479
24 TraesCS2A01G311700 chr3B 87.879 264 20 6 1977 2234 82294127 82293870 4.240000e-77 300
25 TraesCS2A01G311700 chr3B 87.793 213 23 3 2363 2573 804812735 804812524 5.610000e-61 246
26 TraesCS2A01G311700 chr3B 93.069 101 7 0 2129 2229 804813044 804812944 1.630000e-31 148
27 TraesCS2A01G311700 chr4D 84.109 623 88 7 1 621 91057563 91056950 6.250000e-165 592
28 TraesCS2A01G311700 chr4A 83.845 619 79 10 6 621 144631685 144632285 2.930000e-158 569
29 TraesCS2A01G311700 chr4A 81.343 536 87 10 147 679 697766991 697767516 2.410000e-114 424
30 TraesCS2A01G311700 chr4A 76.383 470 108 1 6749 7218 687626688 687627154 4.340000e-62 250
31 TraesCS2A01G311700 chr4A 76.383 470 108 1 6749 7218 687660511 687660977 4.340000e-62 250
32 TraesCS2A01G311700 chr4A 76.383 470 108 3 6749 7218 687706226 687706692 4.340000e-62 250
33 TraesCS2A01G311700 chr4A 79.688 320 54 8 5605 5918 374636803 374637117 3.400000e-53 220
34 TraesCS2A01G311700 chr4A 95.402 87 3 1 2224 2310 578208387 578208472 3.520000e-28 137
35 TraesCS2A01G311700 chr7A 83.522 619 81 10 6 621 619192112 619191512 6.340000e-155 558
36 TraesCS2A01G311700 chr7A 83.199 619 83 11 6 621 188887096 188886496 1.370000e-151 547
37 TraesCS2A01G311700 chr7A 83.654 520 65 9 6 522 619192739 619192237 8.500000e-129 472
38 TraesCS2A01G311700 chr6B 82.665 623 88 11 1 621 716593725 716594329 1.070000e-147 534
39 TraesCS2A01G311700 chr6D 85.885 503 40 7 1706 2182 394563391 394562894 2.330000e-139 507
40 TraesCS2A01G311700 chr6D 89.967 299 28 2 2363 2659 394560864 394560566 1.140000e-102 385
41 TraesCS2A01G311700 chr6D 92.157 255 14 3 2704 2952 394560564 394560310 8.930000e-94 355
42 TraesCS2A01G311700 chr6D 91.080 213 19 0 2503 2715 394560864 394560652 9.190000e-74 289
43 TraesCS2A01G311700 chr6D 91.515 165 13 1 2308 2471 394561029 394560865 7.310000e-55 226
44 TraesCS2A01G311700 chr6D 85.377 212 24 3 2308 2517 394560772 394560566 5.690000e-51 213
45 TraesCS2A01G311700 chr1B 78.144 668 133 9 6 671 462858936 462859592 5.230000e-111 412
46 TraesCS2A01G311700 chr1B 95.455 88 4 0 2223 2310 145451774 145451861 2.720000e-29 141
47 TraesCS2A01G311700 chr6A 78.333 540 107 8 137 674 77426883 77427414 2.500000e-89 340
48 TraesCS2A01G311700 chr6A 78.919 370 69 8 6850 7216 50408196 50408559 7.250000e-60 243
49 TraesCS2A01G311700 chr6A 78.610 374 66 11 6847 7216 50864782 50865145 1.210000e-57 235
50 TraesCS2A01G311700 chr5D 80.781 333 53 5 5593 5914 466561794 466561462 4.340000e-62 250
51 TraesCS2A01G311700 chr5A 79.062 320 56 8 5605 5918 648953773 648954087 7.360000e-50 209
52 TraesCS2A01G311700 chr7B 78.882 322 56 9 5605 5918 122423314 122422997 2.650000e-49 207
53 TraesCS2A01G311700 chr7B 93.548 93 4 2 2231 2323 645504289 645504379 3.520000e-28 137
54 TraesCS2A01G311700 chr3A 78.882 322 56 8 5605 5918 688456516 688456833 2.650000e-49 207
55 TraesCS2A01G311700 chr3A 96.512 86 2 1 2229 2314 28893904 28893820 2.720000e-29 141
56 TraesCS2A01G311700 chr1A 92.500 120 9 0 2833 2952 585342562 585342443 9.650000e-39 172
57 TraesCS2A01G311700 chr4B 98.765 81 1 0 2230 2310 483761959 483761879 2.100000e-30 145
58 TraesCS2A01G311700 chr4B 94.505 91 4 1 2231 2320 368071813 368071723 9.790000e-29 139
59 TraesCS2A01G311700 chr1D 95.556 90 3 1 2222 2310 419022103 419022192 7.570000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G311700 chr2A 535413369 535420606 7237 True 4655.666667 13367 91.542000 1 7238 3 chr2A.!!$R2 7237
1 TraesCS2A01G311700 chr2A 689767009 689767609 600 True 558.000000 558 83.522000 6 621 1 chr2A.!!$R1 615
2 TraesCS2A01G311700 chr2D 398310728 398316007 5279 True 3975.500000 6556 92.848000 683 7237 2 chr2D.!!$R2 6554
3 TraesCS2A01G311700 chr2B 470911934 470917045 5111 True 3728.500000 6252 93.151000 891 7238 2 chr2B.!!$R2 6347
4 TraesCS2A01G311700 chr2B 796671781 796672949 1168 False 639.666667 889 90.076000 1706 2954 3 chr2B.!!$F5 1248
5 TraesCS2A01G311700 chr2B 470903674 470904374 700 False 374.000000 374 77.463000 6208 6912 1 chr2B.!!$F2 704
6 TraesCS2A01G311700 chrUn 76617361 76618529 1168 False 609.333333 876 89.276000 1706 2952 3 chrUn.!!$F1 1246
7 TraesCS2A01G311700 chr3B 82293239 82294127 888 True 566.500000 833 89.001000 1977 2954 2 chr3B.!!$R1 977
8 TraesCS2A01G311700 chr3B 804812278 804813429 1151 True 402.500000 737 89.236000 1706 2952 4 chr3B.!!$R2 1246
9 TraesCS2A01G311700 chr4D 91056950 91057563 613 True 592.000000 592 84.109000 1 621 1 chr4D.!!$R1 620
10 TraesCS2A01G311700 chr4A 144631685 144632285 600 False 569.000000 569 83.845000 6 621 1 chr4A.!!$F1 615
11 TraesCS2A01G311700 chr4A 697766991 697767516 525 False 424.000000 424 81.343000 147 679 1 chr4A.!!$F7 532
12 TraesCS2A01G311700 chr7A 188886496 188887096 600 True 547.000000 547 83.199000 6 621 1 chr7A.!!$R1 615
13 TraesCS2A01G311700 chr7A 619191512 619192739 1227 True 515.000000 558 83.588000 6 621 2 chr7A.!!$R2 615
14 TraesCS2A01G311700 chr6B 716593725 716594329 604 False 534.000000 534 82.665000 1 621 1 chr6B.!!$F1 620
15 TraesCS2A01G311700 chr6D 394560310 394563391 3081 True 329.166667 507 89.330167 1706 2952 6 chr6D.!!$R1 1246
16 TraesCS2A01G311700 chr1B 462858936 462859592 656 False 412.000000 412 78.144000 6 671 1 chr1B.!!$F2 665
17 TraesCS2A01G311700 chr6A 77426883 77427414 531 False 340.000000 340 78.333000 137 674 1 chr6A.!!$F3 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 816 0.598562 GTGGAGTCGAAGCTGAGACA 59.401 55.000 19.79 1.68 39.67 3.41 F
1179 1820 0.038526 AACTTGCCTCGTCGTCGAAT 60.039 50.000 6.19 0.00 45.61 3.34 F
1180 1821 0.038526 ACTTGCCTCGTCGTCGAATT 60.039 50.000 6.19 0.00 45.61 2.17 F
1758 2433 0.253044 TTATGCTCAGGGCCACTCAC 59.747 55.000 6.18 0.00 40.92 3.51 F
2256 4997 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56 F
2261 5002 0.038021 TGCTCTAGCCAATGCAACCA 59.962 50.000 0.00 0.00 41.13 3.67 F
3393 6269 0.316204 AACGTGGTTACCTCTCACCG 59.684 55.000 2.07 0.00 35.60 4.94 F
4867 7745 1.067283 CAGGCATATGAGAGGGCTACG 60.067 57.143 6.97 0.00 43.93 3.51 F
5883 8770 0.323302 TCGTCTGCCCTGCACAAATA 59.677 50.000 0.00 0.00 33.79 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 2414 0.253044 GTGAGTGGCCCTGAGCATAA 59.747 55.000 0.00 0.00 46.50 1.90 R
2237 4978 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57 R
2242 4983 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26 R
3297 6173 1.213296 TCCTAACCATGCCTTCCCTC 58.787 55.000 0.00 0.00 0.00 4.30 R
4173 7049 3.833070 GGTACCTCTCCTTTGAGTTCTGA 59.167 47.826 4.06 0.00 39.75 3.27 R
4281 7157 4.180817 ACACAAAGTTTTGCTTAGTTGGC 58.819 39.130 4.58 0.00 41.79 4.52 R
4921 7801 0.181114 TTGTGCACTGCAGTCCTTCT 59.819 50.000 18.64 0.00 40.08 2.85 R
6113 9002 0.252197 ATCGGACCAAGGTAAGCACC 59.748 55.000 0.00 0.00 46.19 5.01 R
7076 10051 0.027063 CGACTTCAACGTGCGGTTTT 59.973 50.000 0.00 0.00 36.49 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.087892 AGCTCGGCATCGGCAAGT 62.088 61.111 0.00 0.00 43.71 3.16
43 44 2.203294 GGACTGGTGGTTTGCGGT 60.203 61.111 0.00 0.00 0.00 5.68
48 49 2.070654 CTGGTGGTTTGCGGTGGTTC 62.071 60.000 0.00 0.00 0.00 3.62
52 53 1.826487 GGTTTGCGGTGGTTCTGGT 60.826 57.895 0.00 0.00 0.00 4.00
82 710 2.481289 TTGTGGCAACGATGATGGTA 57.519 45.000 0.00 0.00 42.51 3.25
97 725 0.613572 TGGTAGGAGTGATGTCGGCA 60.614 55.000 0.00 0.00 0.00 5.69
122 750 3.131326 CAATGGTTGCGGTACTCGA 57.869 52.632 7.77 0.00 42.43 4.04
133 761 1.738365 CGGTACTCGACTCTTCTCCGA 60.738 57.143 0.00 0.00 42.43 4.55
145 773 1.868987 TTCTCCGACATGTCCGCGAA 61.869 55.000 20.03 16.25 0.00 4.70
148 776 0.804544 TCCGACATGTCCGCGAAATC 60.805 55.000 20.03 0.00 0.00 2.17
184 812 1.290324 GCTGTGGAGTCGAAGCTGA 59.710 57.895 0.00 0.00 32.82 4.26
188 816 0.598562 GTGGAGTCGAAGCTGAGACA 59.401 55.000 19.79 1.68 39.67 3.41
190 818 0.885196 GGAGTCGAAGCTGAGACAGT 59.115 55.000 19.79 4.47 39.67 3.55
234 862 4.641645 CTGCAGGTGGCCCGTTCA 62.642 66.667 5.57 0.00 43.89 3.18
255 884 1.376037 GGTCTTAGTTGCGCCAGCT 60.376 57.895 4.18 2.44 45.42 4.24
278 907 5.324409 TGTGCCTAATTTTGTCCTTCAGAT 58.676 37.500 0.00 0.00 0.00 2.90
282 911 6.071391 TGCCTAATTTTGTCCTTCAGATTTCC 60.071 38.462 0.00 0.00 0.00 3.13
297 926 1.133363 TTTCCCCGTCAGAGTTGGAA 58.867 50.000 0.00 0.00 33.44 3.53
310 939 1.146041 TTGGAACTGCGCTGTCTGT 59.854 52.632 20.71 5.01 0.00 3.41
322 952 2.031163 GTCTGTCGCAGGTGGCTT 59.969 61.111 6.95 0.00 41.67 4.35
334 965 1.657556 GTGGCTTAGTTTTGGCGCA 59.342 52.632 10.83 0.00 38.78 6.09
346 977 0.677414 TTGGCGCAGATCTTCATGCA 60.677 50.000 10.83 0.00 42.68 3.96
369 1000 0.876399 TTCACGCGTCTGCTACAGTA 59.124 50.000 9.86 0.00 39.65 2.74
383 1014 3.068307 GCTACAGTATGGGTTGAGTCGAT 59.932 47.826 0.00 0.00 43.62 3.59
395 1026 2.504367 TGAGTCGATGATCGCCTATGA 58.496 47.619 10.45 0.00 40.21 2.15
426 1057 2.724977 TCGTTTGCTCAGAGTGTAGG 57.275 50.000 0.00 0.00 0.00 3.18
427 1058 1.272490 TCGTTTGCTCAGAGTGTAGGG 59.728 52.381 0.00 0.00 0.00 3.53
428 1059 1.272490 CGTTTGCTCAGAGTGTAGGGA 59.728 52.381 0.00 0.00 0.00 4.20
429 1060 2.093973 CGTTTGCTCAGAGTGTAGGGAT 60.094 50.000 0.00 0.00 0.00 3.85
430 1061 3.265791 GTTTGCTCAGAGTGTAGGGATG 58.734 50.000 0.00 0.00 0.00 3.51
431 1062 1.489481 TGCTCAGAGTGTAGGGATGG 58.511 55.000 0.00 0.00 0.00 3.51
472 1103 1.339610 GGAGAGGAGTGATGACGATGG 59.660 57.143 0.00 0.00 0.00 3.51
522 1153 2.110213 GAAGTGGTGTGCGTGGGA 59.890 61.111 0.00 0.00 0.00 4.37
524 1155 0.889186 GAAGTGGTGTGCGTGGGATT 60.889 55.000 0.00 0.00 0.00 3.01
561 1192 3.371168 CTCAACGGTTGTGATGGTTTTG 58.629 45.455 19.47 0.00 0.00 2.44
562 1193 3.017442 TCAACGGTTGTGATGGTTTTGA 58.983 40.909 19.47 0.00 0.00 2.69
563 1194 3.634448 TCAACGGTTGTGATGGTTTTGAT 59.366 39.130 19.47 0.00 0.00 2.57
564 1195 3.915437 ACGGTTGTGATGGTTTTGATC 57.085 42.857 0.00 0.00 0.00 2.92
565 1196 3.218453 ACGGTTGTGATGGTTTTGATCA 58.782 40.909 0.00 0.00 0.00 2.92
566 1197 3.253188 ACGGTTGTGATGGTTTTGATCAG 59.747 43.478 0.00 0.00 30.39 2.90
567 1198 3.366273 CGGTTGTGATGGTTTTGATCAGG 60.366 47.826 0.00 0.00 30.39 3.86
568 1199 3.573967 GGTTGTGATGGTTTTGATCAGGT 59.426 43.478 0.00 0.00 30.39 4.00
569 1200 4.039124 GGTTGTGATGGTTTTGATCAGGTT 59.961 41.667 0.00 0.00 30.39 3.50
570 1201 5.222631 GTTGTGATGGTTTTGATCAGGTTC 58.777 41.667 0.00 0.00 30.39 3.62
571 1202 4.728772 TGTGATGGTTTTGATCAGGTTCT 58.271 39.130 0.00 0.00 30.39 3.01
572 1203 5.139727 TGTGATGGTTTTGATCAGGTTCTT 58.860 37.500 0.00 0.00 30.39 2.52
573 1204 5.241506 TGTGATGGTTTTGATCAGGTTCTTC 59.758 40.000 0.00 0.00 30.39 2.87
574 1205 5.241506 GTGATGGTTTTGATCAGGTTCTTCA 59.758 40.000 0.00 0.03 30.39 3.02
575 1206 6.012113 TGATGGTTTTGATCAGGTTCTTCAT 58.988 36.000 0.00 0.00 0.00 2.57
576 1207 7.121168 GTGATGGTTTTGATCAGGTTCTTCATA 59.879 37.037 0.00 0.00 30.39 2.15
577 1208 7.669304 TGATGGTTTTGATCAGGTTCTTCATAA 59.331 33.333 0.00 0.00 0.00 1.90
578 1209 8.599624 ATGGTTTTGATCAGGTTCTTCATAAT 57.400 30.769 0.00 0.00 0.00 1.28
579 1210 8.421249 TGGTTTTGATCAGGTTCTTCATAATT 57.579 30.769 0.00 0.00 0.00 1.40
580 1211 9.527157 TGGTTTTGATCAGGTTCTTCATAATTA 57.473 29.630 0.00 0.00 0.00 1.40
585 1216 8.737168 TGATCAGGTTCTTCATAATTAACTGG 57.263 34.615 0.00 0.00 0.00 4.00
586 1217 7.775093 TGATCAGGTTCTTCATAATTAACTGGG 59.225 37.037 0.00 0.00 0.00 4.45
587 1218 5.885912 TCAGGTTCTTCATAATTAACTGGGC 59.114 40.000 0.00 0.00 0.00 5.36
588 1219 5.652014 CAGGTTCTTCATAATTAACTGGGCA 59.348 40.000 0.00 0.00 0.00 5.36
589 1220 6.152661 CAGGTTCTTCATAATTAACTGGGCAA 59.847 38.462 0.00 0.00 0.00 4.52
590 1221 6.897413 AGGTTCTTCATAATTAACTGGGCAAT 59.103 34.615 0.00 0.00 0.00 3.56
591 1222 7.068716 AGGTTCTTCATAATTAACTGGGCAATC 59.931 37.037 0.00 0.00 0.00 2.67
592 1223 7.068716 GGTTCTTCATAATTAACTGGGCAATCT 59.931 37.037 0.00 0.00 0.00 2.40
593 1224 9.120538 GTTCTTCATAATTAACTGGGCAATCTA 57.879 33.333 0.00 0.00 0.00 1.98
594 1225 9.693739 TTCTTCATAATTAACTGGGCAATCTAA 57.306 29.630 0.00 0.00 0.00 2.10
595 1226 9.866655 TCTTCATAATTAACTGGGCAATCTAAT 57.133 29.630 0.00 0.00 0.00 1.73
600 1231 9.965824 ATAATTAACTGGGCAATCTAATTTTCG 57.034 29.630 0.00 0.00 0.00 3.46
601 1232 6.827586 TTAACTGGGCAATCTAATTTTCGT 57.172 33.333 0.00 0.00 0.00 3.85
602 1233 5.722021 AACTGGGCAATCTAATTTTCGTT 57.278 34.783 0.00 0.00 0.00 3.85
603 1234 5.310720 ACTGGGCAATCTAATTTTCGTTC 57.689 39.130 0.00 0.00 0.00 3.95
604 1235 4.142687 ACTGGGCAATCTAATTTTCGTTCG 60.143 41.667 0.00 0.00 0.00 3.95
605 1236 3.127895 TGGGCAATCTAATTTTCGTTCGG 59.872 43.478 0.00 0.00 0.00 4.30
606 1237 3.128068 GGGCAATCTAATTTTCGTTCGGT 59.872 43.478 0.00 0.00 0.00 4.69
607 1238 4.380128 GGGCAATCTAATTTTCGTTCGGTT 60.380 41.667 0.00 0.00 0.00 4.44
608 1239 5.158494 GGCAATCTAATTTTCGTTCGGTTT 58.842 37.500 0.00 0.00 0.00 3.27
609 1240 5.631929 GGCAATCTAATTTTCGTTCGGTTTT 59.368 36.000 0.00 0.00 0.00 2.43
610 1241 6.144886 GGCAATCTAATTTTCGTTCGGTTTTT 59.855 34.615 0.00 0.00 0.00 1.94
636 1267 9.886132 TTCTAATTAACTAAGCGATCCTTTTCT 57.114 29.630 2.37 0.00 34.95 2.52
637 1268 9.886132 TCTAATTAACTAAGCGATCCTTTTCTT 57.114 29.630 2.37 0.00 34.95 2.52
644 1275 7.295930 ACTAAGCGATCCTTTTCTTTTTAACG 58.704 34.615 2.37 0.00 34.95 3.18
645 1276 5.934935 AGCGATCCTTTTCTTTTTAACGA 57.065 34.783 0.00 0.00 0.00 3.85
646 1277 6.308371 AGCGATCCTTTTCTTTTTAACGAA 57.692 33.333 0.00 0.00 0.00 3.85
647 1278 6.371389 AGCGATCCTTTTCTTTTTAACGAAG 58.629 36.000 0.00 0.00 0.00 3.79
648 1279 6.204108 AGCGATCCTTTTCTTTTTAACGAAGA 59.796 34.615 0.00 0.00 0.00 2.87
649 1280 6.302549 GCGATCCTTTTCTTTTTAACGAAGAC 59.697 38.462 0.00 0.00 33.15 3.01
650 1281 7.349711 CGATCCTTTTCTTTTTAACGAAGACA 58.650 34.615 0.00 0.00 33.15 3.41
651 1282 7.530861 CGATCCTTTTCTTTTTAACGAAGACAG 59.469 37.037 0.00 1.65 33.15 3.51
652 1283 7.023197 TCCTTTTCTTTTTAACGAAGACAGG 57.977 36.000 13.38 13.38 36.25 4.00
653 1284 6.824704 TCCTTTTCTTTTTAACGAAGACAGGA 59.175 34.615 15.88 15.88 38.91 3.86
654 1285 7.501225 TCCTTTTCTTTTTAACGAAGACAGGAT 59.499 33.333 15.88 0.00 37.64 3.24
655 1286 8.780249 CCTTTTCTTTTTAACGAAGACAGGATA 58.220 33.333 13.89 0.00 36.65 2.59
657 1288 9.940166 TTTTCTTTTTAACGAAGACAGGATAAC 57.060 29.630 0.00 0.00 33.15 1.89
658 1289 8.897872 TTCTTTTTAACGAAGACAGGATAACT 57.102 30.769 0.00 0.00 33.15 2.24
667 1298 4.003648 AAGACAGGATAACTGCCTTTTCG 58.996 43.478 0.00 0.00 46.12 3.46
668 1299 4.262894 AAGACAGGATAACTGCCTTTTCGA 60.263 41.667 0.00 0.00 46.12 3.71
669 1300 5.744887 AAGACAGGATAACTGCCTTTTCGAA 60.745 40.000 0.00 0.00 46.12 3.71
670 1301 7.189903 AAGACAGGATAACTGCCTTTTCGAAA 61.190 38.462 6.47 6.47 46.12 3.46
671 1302 4.974591 CAGGATAACTGCCTTTTCGAAAG 58.025 43.478 10.98 1.27 40.97 2.62
672 1303 4.695455 CAGGATAACTGCCTTTTCGAAAGA 59.305 41.667 10.98 2.02 40.97 2.52
673 1304 5.181245 CAGGATAACTGCCTTTTCGAAAGAA 59.819 40.000 10.98 0.00 44.22 2.52
674 1305 6.621596 CAGGATAACTGCCTTTTCGAAAGAAG 60.622 42.308 10.98 7.11 45.53 2.85
675 1306 8.696302 CAGGATAACTGCCTTTTCGAAAGAAGA 61.696 40.741 10.98 0.00 45.53 2.87
686 1317 1.128692 CGAAAGAAGAAAAGCGCCGAT 59.871 47.619 2.29 0.00 0.00 4.18
741 1372 2.680913 CCACGCGGGCTGAAGAAAG 61.681 63.158 12.47 0.00 0.00 2.62
742 1373 3.050275 ACGCGGGCTGAAGAAAGC 61.050 61.111 12.47 0.00 42.75 3.51
750 1381 1.609208 GCTGAAGAAAGCCTTGTCCA 58.391 50.000 0.00 0.00 37.20 4.02
751 1382 1.956477 GCTGAAGAAAGCCTTGTCCAA 59.044 47.619 0.00 0.00 37.20 3.53
752 1383 2.030451 GCTGAAGAAAGCCTTGTCCAAG 60.030 50.000 0.00 0.00 37.20 3.61
813 1444 1.006922 GCAAACAACTGCTGCCTCC 60.007 57.895 0.00 0.00 39.34 4.30
880 1521 4.881850 CGGGACTGGCAAAGTAGATATTTT 59.118 41.667 0.00 0.00 40.07 1.82
992 1633 0.972134 CCTCTCACCTCTGCACAGAA 59.028 55.000 1.42 0.00 36.94 3.02
1051 1692 2.373707 CCCTCCCTCTCCAGCAAGG 61.374 68.421 0.00 0.00 39.47 3.61
1071 1712 3.732849 CCCACCCTGCCCTTCTCC 61.733 72.222 0.00 0.00 0.00 3.71
1163 1804 0.817634 TTGCAGGTAACGCAGCAACT 60.818 50.000 4.55 0.00 44.55 3.16
1164 1805 0.817634 TGCAGGTAACGCAGCAACTT 60.818 50.000 0.00 0.00 46.39 2.66
1165 1806 0.385974 GCAGGTAACGCAGCAACTTG 60.386 55.000 0.00 0.00 46.39 3.16
1166 1807 0.385974 CAGGTAACGCAGCAACTTGC 60.386 55.000 5.55 5.55 43.71 4.01
1168 1809 1.515521 GGTAACGCAGCAACTTGCCT 61.516 55.000 10.25 0.00 46.52 4.75
1169 1810 0.110192 GTAACGCAGCAACTTGCCTC 60.110 55.000 10.25 1.84 46.52 4.70
1170 1811 1.565156 TAACGCAGCAACTTGCCTCG 61.565 55.000 18.23 18.23 46.52 4.63
1171 1812 3.349006 CGCAGCAACTTGCCTCGT 61.349 61.111 10.25 0.00 46.52 4.18
1172 1813 2.558313 GCAGCAACTTGCCTCGTC 59.442 61.111 10.25 0.00 46.52 4.20
1173 1814 2.856032 CAGCAACTTGCCTCGTCG 59.144 61.111 10.25 0.00 46.52 5.12
1174 1815 1.956170 CAGCAACTTGCCTCGTCGT 60.956 57.895 10.25 0.00 46.52 4.34
1175 1816 1.664965 AGCAACTTGCCTCGTCGTC 60.665 57.895 10.25 0.00 46.52 4.20
1176 1817 3.000080 GCAACTTGCCTCGTCGTCG 62.000 63.158 1.95 0.00 37.42 5.12
1177 1818 1.371267 CAACTTGCCTCGTCGTCGA 60.371 57.895 4.42 4.42 44.12 4.20
1178 1819 0.937699 CAACTTGCCTCGTCGTCGAA 60.938 55.000 6.19 0.00 45.61 3.71
1179 1820 0.038526 AACTTGCCTCGTCGTCGAAT 60.039 50.000 6.19 0.00 45.61 3.34
1180 1821 0.038526 ACTTGCCTCGTCGTCGAATT 60.039 50.000 6.19 0.00 45.61 2.17
1181 1822 1.200716 ACTTGCCTCGTCGTCGAATTA 59.799 47.619 6.19 0.00 45.61 1.40
1182 1823 2.256174 CTTGCCTCGTCGTCGAATTAA 58.744 47.619 6.19 1.12 45.61 1.40
1183 1824 1.621107 TGCCTCGTCGTCGAATTAAC 58.379 50.000 6.19 0.00 45.61 2.01
1184 1825 1.200716 TGCCTCGTCGTCGAATTAACT 59.799 47.619 6.19 0.00 45.61 2.24
1185 1826 1.844962 GCCTCGTCGTCGAATTAACTC 59.155 52.381 6.19 0.00 45.61 3.01
1186 1827 2.099621 CCTCGTCGTCGAATTAACTCG 58.900 52.381 6.19 0.00 45.61 4.18
1189 1830 1.008745 CGTCGTCGAATTAACTCGTGC 60.009 52.381 6.19 0.49 39.84 5.34
1192 1833 1.266404 CGTCGAATTAACTCGTGCTGC 60.266 52.381 6.19 0.00 39.84 5.25
1221 1895 0.401738 TTAGCTTCTTGCAGGCTGGT 59.598 50.000 17.64 6.77 45.94 4.00
1403 2077 3.012518 AGTACATGTTCCTGCAATGCTC 58.987 45.455 2.30 0.00 0.00 4.26
1415 2089 2.159448 TGCAATGCTCGGGTAATTTTCG 60.159 45.455 6.82 0.00 0.00 3.46
1492 2166 0.680061 ACAAGGTCGAGTTGGAGGAC 59.320 55.000 11.21 0.00 0.00 3.85
1634 2308 7.741027 ATGAAGGTATGCTGATACAGAATTG 57.259 36.000 2.81 0.00 36.85 2.32
1635 2309 5.528690 TGAAGGTATGCTGATACAGAATTGC 59.471 40.000 2.81 0.00 36.85 3.56
1636 2310 5.039920 AGGTATGCTGATACAGAATTGCA 57.960 39.130 2.81 0.00 36.85 4.08
1637 2311 4.818546 AGGTATGCTGATACAGAATTGCAC 59.181 41.667 2.81 0.00 36.85 4.57
1638 2312 4.023707 GGTATGCTGATACAGAATTGCACC 60.024 45.833 2.81 0.00 36.85 5.01
1739 2414 1.612442 ACCATGGTCTACCCGCACT 60.612 57.895 13.00 0.00 35.15 4.40
1758 2433 0.253044 TTATGCTCAGGGCCACTCAC 59.747 55.000 6.18 0.00 40.92 3.51
1770 2445 1.203523 GCCACTCACCTCTAGACACAG 59.796 57.143 0.00 0.00 0.00 3.66
1777 2452 3.830755 TCACCTCTAGACACAGTTTACCC 59.169 47.826 0.00 0.00 0.00 3.69
1943 2638 3.939740 ATGTTGTCTCCTATGCACCAT 57.060 42.857 0.00 0.00 0.00 3.55
2022 2717 8.749026 TTTGTTGTTTATTCCCAGTTGTAGTA 57.251 30.769 0.00 0.00 0.00 1.82
2073 2770 4.615541 GCTGTAAAACTCAACCGTATTTGC 59.384 41.667 0.00 0.00 0.00 3.68
2177 4918 8.579850 ACCTAGCATTTCAAATCATTCTGTAA 57.420 30.769 0.00 0.00 0.00 2.41
2226 4967 4.395581 CAGTGTGTCAGTGCAGATTTAC 57.604 45.455 0.00 0.00 0.00 2.01
2227 4968 3.809279 CAGTGTGTCAGTGCAGATTTACA 59.191 43.478 0.00 0.00 0.00 2.41
2228 4969 4.273235 CAGTGTGTCAGTGCAGATTTACAA 59.727 41.667 0.00 0.00 0.00 2.41
2229 4970 4.273480 AGTGTGTCAGTGCAGATTTACAAC 59.727 41.667 0.00 0.00 0.00 3.32
2230 4971 4.273480 GTGTGTCAGTGCAGATTTACAACT 59.727 41.667 0.00 0.00 0.00 3.16
2231 4972 4.273235 TGTGTCAGTGCAGATTTACAACTG 59.727 41.667 0.00 0.00 37.22 3.16
2232 4973 4.273480 GTGTCAGTGCAGATTTACAACTGT 59.727 41.667 0.00 0.00 36.62 3.55
2233 4974 5.465390 GTGTCAGTGCAGATTTACAACTGTA 59.535 40.000 0.00 0.00 36.62 2.74
2234 4975 5.696270 TGTCAGTGCAGATTTACAACTGTAG 59.304 40.000 0.00 0.00 36.62 2.74
2235 4976 5.926542 GTCAGTGCAGATTTACAACTGTAGA 59.073 40.000 0.00 0.00 36.62 2.59
2236 4977 6.423905 GTCAGTGCAGATTTACAACTGTAGAA 59.576 38.462 0.00 0.00 36.62 2.10
2237 4978 6.646653 TCAGTGCAGATTTACAACTGTAGAAG 59.353 38.462 0.00 0.00 36.62 2.85
2238 4979 6.425114 CAGTGCAGATTTACAACTGTAGAAGT 59.575 38.462 0.00 0.00 42.60 3.01
2239 4980 6.425114 AGTGCAGATTTACAACTGTAGAAGTG 59.575 38.462 0.00 0.00 39.81 3.16
2240 4981 5.179368 TGCAGATTTACAACTGTAGAAGTGC 59.821 40.000 0.00 8.97 39.81 4.40
2241 4982 5.179368 GCAGATTTACAACTGTAGAAGTGCA 59.821 40.000 10.22 0.00 39.81 4.57
2242 4983 6.128172 GCAGATTTACAACTGTAGAAGTGCAT 60.128 38.462 0.00 0.00 39.81 3.96
2243 4984 7.239271 CAGATTTACAACTGTAGAAGTGCATG 58.761 38.462 0.00 0.00 39.81 4.06
2244 4985 5.356882 TTTACAACTGTAGAAGTGCATGC 57.643 39.130 11.82 11.82 39.81 4.06
2245 4986 3.131709 ACAACTGTAGAAGTGCATGCT 57.868 42.857 20.33 0.00 39.81 3.79
2246 4987 3.070018 ACAACTGTAGAAGTGCATGCTC 58.930 45.455 20.33 15.94 39.81 4.26
2247 4988 3.244353 ACAACTGTAGAAGTGCATGCTCT 60.244 43.478 20.33 18.23 39.81 4.09
2248 4989 4.021104 ACAACTGTAGAAGTGCATGCTCTA 60.021 41.667 21.70 15.62 39.81 2.43
2249 4990 4.383850 ACTGTAGAAGTGCATGCTCTAG 57.616 45.455 21.70 16.60 37.88 2.43
2250 4991 3.122297 CTGTAGAAGTGCATGCTCTAGC 58.878 50.000 21.70 16.29 42.50 3.42
2251 4992 2.159043 TGTAGAAGTGCATGCTCTAGCC 60.159 50.000 21.70 13.81 41.18 3.93
2252 4993 0.907486 AGAAGTGCATGCTCTAGCCA 59.093 50.000 21.70 0.00 41.18 4.75
2253 4994 1.280133 AGAAGTGCATGCTCTAGCCAA 59.720 47.619 21.70 0.00 41.18 4.52
2254 4995 2.092538 AGAAGTGCATGCTCTAGCCAAT 60.093 45.455 21.70 5.92 41.18 3.16
2255 4996 1.676746 AGTGCATGCTCTAGCCAATG 58.323 50.000 20.22 0.00 41.18 2.82
2256 4997 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56
2257 4998 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
2258 4999 0.742505 GCATGCTCTAGCCAATGCAA 59.257 50.000 11.37 0.00 44.74 4.08
2259 5000 1.535437 GCATGCTCTAGCCAATGCAAC 60.535 52.381 11.37 2.38 44.74 4.17
2260 5001 1.066605 CATGCTCTAGCCAATGCAACC 59.933 52.381 0.00 0.00 41.13 3.77
2261 5002 0.038021 TGCTCTAGCCAATGCAACCA 59.962 50.000 0.00 0.00 41.13 3.67
2262 5003 1.176527 GCTCTAGCCAATGCAACCAA 58.823 50.000 0.00 0.00 41.13 3.67
2263 5004 1.545582 GCTCTAGCCAATGCAACCAAA 59.454 47.619 0.00 0.00 41.13 3.28
2264 5005 2.029110 GCTCTAGCCAATGCAACCAAAA 60.029 45.455 0.00 0.00 41.13 2.44
2265 5006 3.841643 CTCTAGCCAATGCAACCAAAAG 58.158 45.455 0.00 0.00 41.13 2.27
2266 5007 3.495331 TCTAGCCAATGCAACCAAAAGA 58.505 40.909 0.00 0.00 41.13 2.52
2267 5008 2.531522 AGCCAATGCAACCAAAAGAC 57.468 45.000 0.00 0.00 41.13 3.01
2268 5009 1.070601 AGCCAATGCAACCAAAAGACC 59.929 47.619 0.00 0.00 41.13 3.85
2269 5010 1.782044 CCAATGCAACCAAAAGACCG 58.218 50.000 0.00 0.00 0.00 4.79
2270 5011 1.339610 CCAATGCAACCAAAAGACCGA 59.660 47.619 0.00 0.00 0.00 4.69
2271 5012 2.029110 CCAATGCAACCAAAAGACCGAT 60.029 45.455 0.00 0.00 0.00 4.18
2272 5013 3.244976 CAATGCAACCAAAAGACCGATC 58.755 45.455 0.00 0.00 0.00 3.69
2273 5014 2.270352 TGCAACCAAAAGACCGATCT 57.730 45.000 0.00 0.00 36.42 2.75
2274 5015 1.879380 TGCAACCAAAAGACCGATCTG 59.121 47.619 0.00 0.00 34.48 2.90
2275 5016 2.151202 GCAACCAAAAGACCGATCTGA 58.849 47.619 0.00 0.00 34.48 3.27
2276 5017 2.749621 GCAACCAAAAGACCGATCTGAT 59.250 45.455 0.00 0.00 34.48 2.90
2277 5018 3.426695 GCAACCAAAAGACCGATCTGATG 60.427 47.826 0.00 0.00 34.48 3.07
2278 5019 2.991250 ACCAAAAGACCGATCTGATGG 58.009 47.619 9.14 9.14 34.48 3.51
2279 5020 2.571653 ACCAAAAGACCGATCTGATGGA 59.428 45.455 16.17 0.00 34.48 3.41
2280 5021 3.009033 ACCAAAAGACCGATCTGATGGAA 59.991 43.478 16.17 0.00 34.48 3.53
2281 5022 3.624861 CCAAAAGACCGATCTGATGGAAG 59.375 47.826 5.34 0.00 34.48 3.46
2282 5023 4.507710 CAAAAGACCGATCTGATGGAAGA 58.492 43.478 11.46 0.00 34.48 2.87
2283 5024 4.399004 AAAGACCGATCTGATGGAAGAG 57.601 45.455 11.46 0.00 34.48 2.85
2284 5025 3.304911 AGACCGATCTGATGGAAGAGA 57.695 47.619 11.46 0.00 32.29 3.10
2285 5026 2.955660 AGACCGATCTGATGGAAGAGAC 59.044 50.000 11.46 0.00 32.29 3.36
2286 5027 2.955660 GACCGATCTGATGGAAGAGACT 59.044 50.000 11.46 0.00 0.00 3.24
2287 5028 4.138290 GACCGATCTGATGGAAGAGACTA 58.862 47.826 11.46 0.00 0.00 2.59
2288 5029 4.141287 ACCGATCTGATGGAAGAGACTAG 58.859 47.826 11.46 0.00 0.00 2.57
2289 5030 3.505680 CCGATCTGATGGAAGAGACTAGG 59.494 52.174 0.83 0.00 0.00 3.02
2290 5031 3.057596 CGATCTGATGGAAGAGACTAGGC 60.058 52.174 0.00 0.00 0.00 3.93
2291 5032 3.388552 TCTGATGGAAGAGACTAGGCA 57.611 47.619 0.00 0.00 0.00 4.75
2292 5033 3.713003 TCTGATGGAAGAGACTAGGCAA 58.287 45.455 0.00 0.00 0.00 4.52
2293 5034 3.449018 TCTGATGGAAGAGACTAGGCAAC 59.551 47.826 0.00 0.00 0.00 4.17
2294 5035 3.173151 TGATGGAAGAGACTAGGCAACA 58.827 45.455 0.00 0.00 41.41 3.33
2295 5036 3.055819 TGATGGAAGAGACTAGGCAACAC 60.056 47.826 0.00 0.00 41.41 3.32
2296 5037 2.325484 TGGAAGAGACTAGGCAACACA 58.675 47.619 0.00 0.00 41.41 3.72
2297 5038 2.906389 TGGAAGAGACTAGGCAACACAT 59.094 45.455 0.00 0.00 41.41 3.21
2298 5039 3.327757 TGGAAGAGACTAGGCAACACATT 59.672 43.478 0.00 0.00 41.41 2.71
2299 5040 4.530553 TGGAAGAGACTAGGCAACACATTA 59.469 41.667 0.00 0.00 41.41 1.90
2300 5041 5.189736 TGGAAGAGACTAGGCAACACATTAT 59.810 40.000 0.00 0.00 41.41 1.28
2301 5042 6.382859 TGGAAGAGACTAGGCAACACATTATA 59.617 38.462 0.00 0.00 41.41 0.98
2302 5043 6.702282 GGAAGAGACTAGGCAACACATTATAC 59.298 42.308 0.00 0.00 41.41 1.47
2303 5044 5.833082 AGAGACTAGGCAACACATTATACG 58.167 41.667 0.00 0.00 41.41 3.06
2304 5045 5.360144 AGAGACTAGGCAACACATTATACGT 59.640 40.000 0.00 0.00 41.41 3.57
2305 5046 5.348986 AGACTAGGCAACACATTATACGTG 58.651 41.667 0.00 0.84 40.32 4.49
2306 5047 5.126545 AGACTAGGCAACACATTATACGTGA 59.873 40.000 0.00 0.00 37.80 4.35
2347 5088 7.113544 CCTTGCAAAATTCTTTCTTCTTCGTAC 59.886 37.037 0.00 0.00 0.00 3.67
2374 5115 9.967346 GAATTTAATTTAAATACCAGAGGGCTC 57.033 33.333 13.38 2.32 37.39 4.70
2376 5117 3.945640 TTTAAATACCAGAGGGCTCCC 57.054 47.619 0.00 0.00 37.90 4.30
2638 5400 9.474249 GCAAAGTTATTTACTCTTCGTATGAAC 57.526 33.333 0.00 0.00 35.54 3.18
2702 5464 1.028905 TTGCCAGGACAAAACTTCGG 58.971 50.000 0.00 0.00 0.00 4.30
2719 5581 5.232463 ACTTCGGTTTTCACGAGCTATTTA 58.768 37.500 0.00 0.00 41.81 1.40
2758 5620 1.189524 TTAGGTACGTGTGCCAGCCT 61.190 55.000 9.82 0.00 37.85 4.58
2774 5637 4.212214 GCCAGCCTATCTCGTTCAAAATAG 59.788 45.833 0.00 0.00 0.00 1.73
2844 5719 2.543635 TCGGGAAGGTTAAGGCTAACT 58.456 47.619 0.00 0.00 38.01 2.24
2954 5830 3.243771 GGTTCAGAAACTCACCTCTCGAA 60.244 47.826 0.00 0.00 35.61 3.71
2955 5831 3.644884 TCAGAAACTCACCTCTCGAAC 57.355 47.619 0.00 0.00 0.00 3.95
2956 5832 2.956333 TCAGAAACTCACCTCTCGAACA 59.044 45.455 0.00 0.00 0.00 3.18
2957 5833 3.574396 TCAGAAACTCACCTCTCGAACAT 59.426 43.478 0.00 0.00 0.00 2.71
2958 5834 4.039245 TCAGAAACTCACCTCTCGAACATT 59.961 41.667 0.00 0.00 0.00 2.71
2959 5835 4.151335 CAGAAACTCACCTCTCGAACATTG 59.849 45.833 0.00 0.00 0.00 2.82
2960 5836 4.039245 AGAAACTCACCTCTCGAACATTGA 59.961 41.667 0.00 0.00 0.00 2.57
2961 5837 3.305398 ACTCACCTCTCGAACATTGAC 57.695 47.619 0.00 0.00 0.00 3.18
2962 5838 2.628178 ACTCACCTCTCGAACATTGACA 59.372 45.455 0.00 0.00 0.00 3.58
2963 5839 3.249091 CTCACCTCTCGAACATTGACAG 58.751 50.000 0.00 0.00 0.00 3.51
2964 5840 2.890945 TCACCTCTCGAACATTGACAGA 59.109 45.455 0.00 0.00 0.00 3.41
3108 5984 3.792401 TGAACTCAAGTTGATGTCACGT 58.208 40.909 5.91 0.00 38.56 4.49
3159 6035 5.615289 ACTATGAATGCCTCTGTATGTTCC 58.385 41.667 0.00 0.00 0.00 3.62
3173 6049 8.547481 TCTGTATGTTCCTACCAAAGATATCA 57.453 34.615 5.32 0.00 0.00 2.15
3174 6050 8.421784 TCTGTATGTTCCTACCAAAGATATCAC 58.578 37.037 5.32 0.00 0.00 3.06
3249 6125 2.479198 GCAGTTAGCGCCGGAAAC 59.521 61.111 5.05 3.94 0.00 2.78
3297 6173 7.687941 TTCTGATGCTTTTAAAAGAGTAGGG 57.312 36.000 28.11 13.90 38.28 3.53
3393 6269 0.316204 AACGTGGTTACCTCTCACCG 59.684 55.000 2.07 0.00 35.60 4.94
3669 6545 3.686726 GGATGTCGAAGAAGAAGCATTGT 59.313 43.478 0.00 0.00 39.69 2.71
4108 6984 4.320567 GGAGAAACTGCAGTTAAAGCTTCC 60.321 45.833 31.31 23.77 37.25 3.46
4111 6987 3.214696 ACTGCAGTTAAAGCTTCCTGT 57.785 42.857 15.25 0.00 0.00 4.00
4152 7028 5.469760 TGAATATGGTCATCTTAATGCGGTG 59.530 40.000 0.00 0.00 32.58 4.94
4163 7039 8.849168 TCATCTTAATGCGGTGATATTTTTCAT 58.151 29.630 0.00 0.00 32.58 2.57
4281 7157 8.230486 GTCATCAGGTGTCACAAGTATTTTTAG 58.770 37.037 5.12 0.00 0.00 1.85
4282 7158 6.554334 TCAGGTGTCACAAGTATTTTTAGC 57.446 37.500 5.12 0.00 0.00 3.09
4283 7159 5.472137 TCAGGTGTCACAAGTATTTTTAGCC 59.528 40.000 5.12 0.00 0.00 3.93
4284 7160 5.240623 CAGGTGTCACAAGTATTTTTAGCCA 59.759 40.000 5.12 0.00 0.00 4.75
4285 7161 5.830991 AGGTGTCACAAGTATTTTTAGCCAA 59.169 36.000 5.12 0.00 0.00 4.52
4286 7162 5.918576 GGTGTCACAAGTATTTTTAGCCAAC 59.081 40.000 5.12 0.00 0.00 3.77
4287 7163 6.238925 GGTGTCACAAGTATTTTTAGCCAACT 60.239 38.462 5.12 0.00 0.00 3.16
4288 7164 7.040961 GGTGTCACAAGTATTTTTAGCCAACTA 60.041 37.037 5.12 0.00 0.00 2.24
4289 7165 8.347035 GTGTCACAAGTATTTTTAGCCAACTAA 58.653 33.333 0.00 0.00 36.57 2.24
4290 7166 8.564574 TGTCACAAGTATTTTTAGCCAACTAAG 58.435 33.333 0.00 0.00 39.51 2.18
4291 7167 7.537649 GTCACAAGTATTTTTAGCCAACTAAGC 59.462 37.037 0.00 0.00 39.51 3.09
4292 7168 7.229707 TCACAAGTATTTTTAGCCAACTAAGCA 59.770 33.333 0.00 0.00 39.51 3.91
4293 7169 7.865385 CACAAGTATTTTTAGCCAACTAAGCAA 59.135 33.333 0.00 0.00 39.51 3.91
4294 7170 8.417884 ACAAGTATTTTTAGCCAACTAAGCAAA 58.582 29.630 0.00 0.00 39.51 3.68
4295 7171 9.255304 CAAGTATTTTTAGCCAACTAAGCAAAA 57.745 29.630 0.00 0.00 39.51 2.44
4296 7172 8.812147 AGTATTTTTAGCCAACTAAGCAAAAC 57.188 30.769 0.00 0.00 39.51 2.43
4297 7173 8.638873 AGTATTTTTAGCCAACTAAGCAAAACT 58.361 29.630 0.00 0.00 39.51 2.66
4298 7174 9.256477 GTATTTTTAGCCAACTAAGCAAAACTT 57.744 29.630 0.00 0.00 39.51 2.66
4299 7175 8.731275 ATTTTTAGCCAACTAAGCAAAACTTT 57.269 26.923 0.00 0.00 39.51 2.66
4300 7176 7.532682 TTTTAGCCAACTAAGCAAAACTTTG 57.467 32.000 0.00 0.00 39.51 2.77
4301 7177 4.736126 AGCCAACTAAGCAAAACTTTGT 57.264 36.364 4.23 0.00 44.71 2.83
4320 7196 3.815809 TGTGTAACTAGCCTTTTGTGCT 58.184 40.909 0.00 0.00 38.04 4.40
4342 7218 5.163581 GCTGTTTGGACTGCATGATTCTAAT 60.164 40.000 0.00 0.00 46.40 1.73
4442 7318 2.100749 GCCCTTAATGCAACCATGGTAC 59.899 50.000 20.12 14.37 0.00 3.34
4473 7349 9.507329 AACCAATCTACAATCTTATTATGCGAT 57.493 29.630 0.00 0.00 0.00 4.58
4499 7375 8.999431 TGTTCTGTGAAGTACAATTTTCCTATC 58.001 33.333 0.00 0.00 39.20 2.08
4502 7378 7.759886 TCTGTGAAGTACAATTTTCCTATCTCG 59.240 37.037 0.00 0.00 39.20 4.04
4512 7388 7.280205 ACAATTTTCCTATCTCGTAACCACATC 59.720 37.037 0.00 0.00 0.00 3.06
4635 7511 9.920946 ATTGGATAATTTAGAGCAGAAGGTAAA 57.079 29.630 0.00 0.00 0.00 2.01
4713 7589 5.192923 TGGCCCTAATTACCACTGTAGAAAT 59.807 40.000 0.00 0.00 0.00 2.17
4715 7591 7.092354 TGGCCCTAATTACCACTGTAGAAATTA 60.092 37.037 0.00 0.00 0.00 1.40
4755 7632 9.961264 AGTATACCGAGTAGATGATCTAATGAA 57.039 33.333 7.20 0.00 29.58 2.57
4804 7681 4.036144 GCCATCTTGCTAATTTCTGGAGAC 59.964 45.833 0.00 0.00 0.00 3.36
4867 7745 1.067283 CAGGCATATGAGAGGGCTACG 60.067 57.143 6.97 0.00 43.93 3.51
4897 7777 5.811613 CCGATTTCATTGCACAATTACCATT 59.188 36.000 0.00 0.00 0.00 3.16
4898 7778 6.313411 CCGATTTCATTGCACAATTACCATTT 59.687 34.615 0.00 0.00 0.00 2.32
4941 7821 0.590195 GAAGGACTGCAGTGCACAAG 59.410 55.000 35.52 15.41 38.96 3.16
4975 7855 5.359576 AGAAACTGCCAACAACTCACAATAA 59.640 36.000 0.00 0.00 0.00 1.40
5017 7897 3.055747 TGCCGTACTACACATGGATTTCA 60.056 43.478 0.00 0.00 0.00 2.69
5020 7900 5.504010 GCCGTACTACACATGGATTTCATTG 60.504 44.000 0.00 0.00 32.92 2.82
5021 7901 5.584649 CCGTACTACACATGGATTTCATTGT 59.415 40.000 0.00 0.00 32.92 2.71
5022 7902 6.238103 CCGTACTACACATGGATTTCATTGTC 60.238 42.308 0.00 0.00 32.92 3.18
5025 7905 4.789012 ACACATGGATTTCATTGTCCAC 57.211 40.909 0.00 0.00 46.55 4.02
5027 7907 3.510753 CACATGGATTTCATTGTCCACCA 59.489 43.478 0.00 0.00 46.55 4.17
5031 7911 3.006752 TGGATTTCATTGTCCACCAAAGC 59.993 43.478 0.00 0.00 39.51 3.51
5048 7928 2.226962 AGCAGTGGATGATTTGGCTT 57.773 45.000 0.00 0.00 0.00 4.35
5056 7936 2.738314 GGATGATTTGGCTTTGTGCAAC 59.262 45.455 0.00 0.00 45.15 4.17
5082 7962 1.732809 TGTCTCGACTAGCTCTTCACG 59.267 52.381 0.00 0.00 0.00 4.35
5085 7965 3.370366 GTCTCGACTAGCTCTTCACGTTA 59.630 47.826 0.00 0.00 0.00 3.18
5091 7971 3.927142 ACTAGCTCTTCACGTTATGTTGC 59.073 43.478 0.00 0.00 0.00 4.17
5260 8144 1.283029 ACATACTGCAATCCACAGGCT 59.717 47.619 0.00 0.00 39.55 4.58
5283 8167 1.336887 ACTCGAGTTCACCACAATCCG 60.337 52.381 13.58 0.00 0.00 4.18
5298 8182 4.473520 CCGGGCCTACTGGTGCAG 62.474 72.222 0.84 0.00 41.03 4.41
5344 8228 6.072175 AGGTGCTTGTGCTTTATCGAAAATAA 60.072 34.615 0.00 0.00 40.48 1.40
5345 8229 6.751888 GGTGCTTGTGCTTTATCGAAAATAAT 59.248 34.615 0.00 0.00 40.48 1.28
5422 8306 3.754965 ACCACACTGATAAATGCACTGT 58.245 40.909 0.00 0.00 0.00 3.55
5455 8339 5.649395 TCTTGAGCCATAACTCCTTTCATTG 59.351 40.000 0.00 0.00 35.72 2.82
5457 8341 3.950395 GAGCCATAACTCCTTTCATTGCT 59.050 43.478 0.00 0.00 0.00 3.91
5505 8389 2.315176 ACATGCTCTGAGCTACCCTAG 58.685 52.381 28.04 13.11 42.97 3.02
5623 8510 6.072175 TGCACATTTGTCTGGTAAACTATTCC 60.072 38.462 0.00 0.00 0.00 3.01
5681 8568 1.954528 CTGCTGTTGAAGGTGCTGG 59.045 57.895 0.00 0.00 0.00 4.85
5731 8618 3.414272 GCCAACGGCTGCTATGAG 58.586 61.111 0.00 0.00 46.69 2.90
5785 8672 8.739039 CCATCAAAGGTTAGTGAAACAATGATA 58.261 33.333 0.00 0.00 41.43 2.15
5817 8704 9.712305 ATGGTTAAAATAATCCTATGTCTCTCG 57.288 33.333 0.00 0.00 0.00 4.04
5842 8729 7.424452 CGAACTAAACCAATTAATAACGCTGAC 59.576 37.037 0.00 0.00 0.00 3.51
5868 8755 4.493220 GCATCACTAACTCTGCAATTCGTC 60.493 45.833 0.00 0.00 34.77 4.20
5883 8770 0.323302 TCGTCTGCCCTGCACAAATA 59.677 50.000 0.00 0.00 33.79 1.40
5983 8870 1.008995 GCGCAAGAAAGCAAACCGA 60.009 52.632 0.30 0.00 43.02 4.69
6067 8956 9.884465 GTAAACTATATTTGCACCTTCATCATC 57.116 33.333 0.00 0.00 0.00 2.92
6068 8957 8.523915 AAACTATATTTGCACCTTCATCATCA 57.476 30.769 0.00 0.00 0.00 3.07
6069 8958 8.701908 AACTATATTTGCACCTTCATCATCAT 57.298 30.769 0.00 0.00 0.00 2.45
6071 8960 9.970553 ACTATATTTGCACCTTCATCATCATAT 57.029 29.630 0.00 0.00 0.00 1.78
6089 8978 9.872721 TCATCATATAGAAAGATGCATCTTCTC 57.127 33.333 35.67 30.49 45.83 2.87
6164 9053 5.339008 TTCAGGTATTCGAGTGTAGCATT 57.661 39.130 0.00 0.00 0.00 3.56
6197 9106 1.081242 GAGCCACCACAAATGTGCG 60.081 57.895 8.03 4.57 44.34 5.34
6259 9195 6.407202 TGAGCTGGAAGAAAGATTTACTACC 58.593 40.000 0.00 0.00 34.07 3.18
6542 9496 2.271800 CGAAGGCAGGAACACAGATAC 58.728 52.381 0.00 0.00 0.00 2.24
6543 9497 2.353704 CGAAGGCAGGAACACAGATACA 60.354 50.000 0.00 0.00 0.00 2.29
6544 9498 3.265791 GAAGGCAGGAACACAGATACAG 58.734 50.000 0.00 0.00 0.00 2.74
6545 9499 2.260822 AGGCAGGAACACAGATACAGT 58.739 47.619 0.00 0.00 0.00 3.55
6546 9500 3.441101 AGGCAGGAACACAGATACAGTA 58.559 45.455 0.00 0.00 0.00 2.74
6547 9501 3.195825 AGGCAGGAACACAGATACAGTAC 59.804 47.826 0.00 0.00 0.00 2.73
6548 9502 3.195825 GGCAGGAACACAGATACAGTACT 59.804 47.826 0.00 0.00 0.00 2.73
6549 9503 4.401519 GGCAGGAACACAGATACAGTACTA 59.598 45.833 0.00 0.00 0.00 1.82
6570 9524 2.697431 TTAATTTCGTGTGCCTGTGC 57.303 45.000 0.00 0.00 38.26 4.57
6594 9549 0.694444 GATAGTGGAGCCTTGGGGGA 60.694 60.000 0.00 0.00 37.23 4.81
6634 9589 0.867753 CACGTGCCGCTAGCTAGAAG 60.868 60.000 25.15 16.09 44.23 2.85
6759 9734 2.050168 GAACGGGTGCGTCGTGTA 60.050 61.111 0.00 0.00 40.96 2.90
6805 9780 2.285083 TCACCTTGAAGAACACGTTGG 58.715 47.619 0.00 0.00 0.00 3.77
6811 9786 1.142060 TGAAGAACACGTTGGGGTCAT 59.858 47.619 0.00 0.00 0.00 3.06
6861 9836 4.373116 GGCGCCCACTCGAACTCA 62.373 66.667 18.11 0.00 0.00 3.41
7076 10051 1.847798 CTCCCGATGTCCCCCACAAA 61.848 60.000 0.00 0.00 38.97 2.83
7100 10075 2.660552 CACGTTGAAGTCGCCGGT 60.661 61.111 1.90 0.00 0.00 5.28
7140 10115 4.471726 AACGTAGCGTCCTCGGCG 62.472 66.667 0.00 0.00 39.99 6.46
7170 10145 4.446413 GGGACGAACGGCACCGAT 62.446 66.667 17.40 3.14 42.83 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.203280 CGCAAACCACCAGTCCCA 60.203 61.111 0.00 0.00 0.00 4.37
52 53 0.685785 TTGCCACAAAAGCCTGGACA 60.686 50.000 0.00 0.00 0.00 4.02
63 691 2.355197 CTACCATCATCGTTGCCACAA 58.645 47.619 0.00 0.00 0.00 3.33
82 710 0.615331 ATGTTGCCGACATCACTCCT 59.385 50.000 0.00 0.00 45.88 3.69
118 746 1.740585 ACATGTCGGAGAAGAGTCGAG 59.259 52.381 0.00 0.00 39.69 4.04
122 750 0.811915 CGGACATGTCGGAGAAGAGT 59.188 55.000 24.81 0.00 39.69 3.24
145 773 1.314730 ACAAACAAACCGAGGCGATT 58.685 45.000 0.00 0.00 0.00 3.34
148 776 1.206115 GCAACAAACAAACCGAGGCG 61.206 55.000 0.00 0.00 0.00 5.52
184 812 3.252284 CACAGGGCCCCACTGTCT 61.252 66.667 21.43 0.00 45.50 3.41
188 816 0.986550 GTATACCACAGGGCCCCACT 60.987 60.000 21.43 0.00 37.90 4.00
190 818 2.067605 CGTATACCACAGGGCCCCA 61.068 63.158 21.43 0.00 37.90 4.96
234 862 2.434359 GGCGCAACTAAGACCGCT 60.434 61.111 10.83 0.00 45.21 5.52
238 866 0.951040 ACAGCTGGCGCAACTAAGAC 60.951 55.000 19.93 0.00 39.10 3.01
255 884 4.724399 TCTGAAGGACAAAATTAGGCACA 58.276 39.130 0.00 0.00 0.00 4.57
262 891 4.220602 CGGGGAAATCTGAAGGACAAAATT 59.779 41.667 0.00 0.00 0.00 1.82
263 892 3.763897 CGGGGAAATCTGAAGGACAAAAT 59.236 43.478 0.00 0.00 0.00 1.82
278 907 1.133363 TTCCAACTCTGACGGGGAAA 58.867 50.000 0.00 0.00 34.86 3.13
282 911 0.951040 GCAGTTCCAACTCTGACGGG 60.951 60.000 0.00 0.00 37.08 5.28
322 952 3.052455 TGAAGATCTGCGCCAAAACTA 57.948 42.857 4.18 0.00 0.00 2.24
334 965 2.676839 CGTGAAGCTTGCATGAAGATCT 59.323 45.455 2.10 0.00 32.82 2.75
346 977 1.009389 GTAGCAGACGCGTGAAGCTT 61.009 55.000 27.31 15.50 45.49 3.74
369 1000 1.539065 GCGATCATCGACTCAACCCAT 60.539 52.381 12.38 0.00 43.74 4.00
383 1014 2.776312 GACTTCGTCATAGGCGATCA 57.224 50.000 0.00 0.00 38.21 2.92
406 1037 2.093973 CCCTACACTCTGAGCAAACGAT 60.094 50.000 4.19 0.00 0.00 3.73
426 1057 1.302832 GTCATCGCCATCCCCATCC 60.303 63.158 0.00 0.00 0.00 3.51
427 1058 1.669115 CGTCATCGCCATCCCCATC 60.669 63.158 0.00 0.00 0.00 3.51
428 1059 2.427320 CGTCATCGCCATCCCCAT 59.573 61.111 0.00 0.00 0.00 4.00
454 1085 0.749649 GCCATCGTCATCACTCCTCT 59.250 55.000 0.00 0.00 0.00 3.69
472 1103 1.846648 CGAGACAACACACAGACGC 59.153 57.895 0.00 0.00 0.00 5.19
475 1106 1.299850 CGGCGAGACAACACACAGA 60.300 57.895 0.00 0.00 0.00 3.41
479 1110 2.338620 CCTCGGCGAGACAACACA 59.661 61.111 36.47 0.00 0.00 3.72
483 1114 3.296709 GAAGGCCTCGGCGAGACAA 62.297 63.158 36.47 0.94 43.06 3.18
537 1168 1.167851 CCATCACAACCGTTGAGCAT 58.832 50.000 18.19 3.79 0.00 3.79
538 1169 0.179032 ACCATCACAACCGTTGAGCA 60.179 50.000 18.19 1.56 0.00 4.26
544 1175 3.218453 TGATCAAAACCATCACAACCGT 58.782 40.909 0.00 0.00 0.00 4.83
561 1192 7.255277 GCCCAGTTAATTATGAAGAACCTGATC 60.255 40.741 0.00 0.00 0.00 2.92
562 1193 6.547510 GCCCAGTTAATTATGAAGAACCTGAT 59.452 38.462 0.00 0.00 0.00 2.90
563 1194 5.885912 GCCCAGTTAATTATGAAGAACCTGA 59.114 40.000 0.00 0.00 0.00 3.86
564 1195 5.652014 TGCCCAGTTAATTATGAAGAACCTG 59.348 40.000 0.00 0.00 0.00 4.00
565 1196 5.826643 TGCCCAGTTAATTATGAAGAACCT 58.173 37.500 0.00 0.00 0.00 3.50
566 1197 6.524101 TTGCCCAGTTAATTATGAAGAACC 57.476 37.500 0.00 0.00 0.00 3.62
567 1198 8.000780 AGATTGCCCAGTTAATTATGAAGAAC 57.999 34.615 0.00 0.00 0.00 3.01
568 1199 9.693739 TTAGATTGCCCAGTTAATTATGAAGAA 57.306 29.630 0.00 0.00 0.00 2.52
569 1200 9.866655 ATTAGATTGCCCAGTTAATTATGAAGA 57.133 29.630 0.00 0.00 0.00 2.87
574 1205 9.965824 CGAAAATTAGATTGCCCAGTTAATTAT 57.034 29.630 0.00 0.00 0.00 1.28
575 1206 8.962679 ACGAAAATTAGATTGCCCAGTTAATTA 58.037 29.630 0.00 0.00 0.00 1.40
576 1207 7.836842 ACGAAAATTAGATTGCCCAGTTAATT 58.163 30.769 0.00 0.00 0.00 1.40
577 1208 7.404671 ACGAAAATTAGATTGCCCAGTTAAT 57.595 32.000 0.00 0.00 0.00 1.40
578 1209 6.827586 ACGAAAATTAGATTGCCCAGTTAA 57.172 33.333 0.00 0.00 0.00 2.01
579 1210 6.402766 CGAACGAAAATTAGATTGCCCAGTTA 60.403 38.462 0.00 0.00 0.00 2.24
580 1211 5.619086 CGAACGAAAATTAGATTGCCCAGTT 60.619 40.000 0.00 0.00 0.00 3.16
581 1212 4.142687 CGAACGAAAATTAGATTGCCCAGT 60.143 41.667 0.00 0.00 0.00 4.00
582 1213 4.342772 CGAACGAAAATTAGATTGCCCAG 58.657 43.478 0.00 0.00 0.00 4.45
583 1214 3.127895 CCGAACGAAAATTAGATTGCCCA 59.872 43.478 0.00 0.00 0.00 5.36
584 1215 3.128068 ACCGAACGAAAATTAGATTGCCC 59.872 43.478 0.00 0.00 0.00 5.36
585 1216 4.351131 ACCGAACGAAAATTAGATTGCC 57.649 40.909 0.00 0.00 0.00 4.52
586 1217 6.684609 AAAACCGAACGAAAATTAGATTGC 57.315 33.333 0.00 0.00 0.00 3.56
610 1241 9.886132 AGAAAAGGATCGCTTAGTTAATTAGAA 57.114 29.630 0.00 0.00 0.00 2.10
611 1242 9.886132 AAGAAAAGGATCGCTTAGTTAATTAGA 57.114 29.630 0.00 0.00 0.00 2.10
618 1249 7.801783 CGTTAAAAAGAAAAGGATCGCTTAGTT 59.198 33.333 0.00 0.00 0.00 2.24
619 1250 7.172019 TCGTTAAAAAGAAAAGGATCGCTTAGT 59.828 33.333 0.00 0.00 0.00 2.24
620 1251 7.515643 TCGTTAAAAAGAAAAGGATCGCTTAG 58.484 34.615 0.00 0.00 0.00 2.18
621 1252 7.424227 TCGTTAAAAAGAAAAGGATCGCTTA 57.576 32.000 0.00 0.00 0.00 3.09
622 1253 6.308371 TCGTTAAAAAGAAAAGGATCGCTT 57.692 33.333 0.00 0.00 0.00 4.68
623 1254 5.934935 TCGTTAAAAAGAAAAGGATCGCT 57.065 34.783 0.00 0.00 0.00 4.93
624 1255 6.302549 GTCTTCGTTAAAAAGAAAAGGATCGC 59.697 38.462 3.74 0.00 34.68 4.58
625 1256 7.349711 TGTCTTCGTTAAAAAGAAAAGGATCG 58.650 34.615 3.74 0.00 34.68 3.69
626 1257 7.803659 CCTGTCTTCGTTAAAAAGAAAAGGATC 59.196 37.037 17.32 0.00 39.25 3.36
627 1258 7.501225 TCCTGTCTTCGTTAAAAAGAAAAGGAT 59.499 33.333 19.07 0.00 40.02 3.24
628 1259 6.824704 TCCTGTCTTCGTTAAAAAGAAAAGGA 59.175 34.615 19.07 19.07 41.27 3.36
629 1260 7.023197 TCCTGTCTTCGTTAAAAAGAAAAGG 57.977 36.000 16.71 16.71 38.76 3.11
631 1262 9.940166 GTTATCCTGTCTTCGTTAAAAAGAAAA 57.060 29.630 3.74 0.00 34.68 2.29
632 1263 9.333724 AGTTATCCTGTCTTCGTTAAAAAGAAA 57.666 29.630 3.74 0.00 34.68 2.52
633 1264 8.770828 CAGTTATCCTGTCTTCGTTAAAAAGAA 58.229 33.333 3.74 0.00 34.68 2.52
634 1265 7.095355 GCAGTTATCCTGTCTTCGTTAAAAAGA 60.095 37.037 0.00 0.00 43.55 2.52
635 1266 7.015877 GCAGTTATCCTGTCTTCGTTAAAAAG 58.984 38.462 0.00 0.00 43.55 2.27
636 1267 6.072893 GGCAGTTATCCTGTCTTCGTTAAAAA 60.073 38.462 0.00 0.00 42.76 1.94
637 1268 5.410439 GGCAGTTATCCTGTCTTCGTTAAAA 59.590 40.000 0.00 0.00 42.76 1.52
638 1269 4.933400 GGCAGTTATCCTGTCTTCGTTAAA 59.067 41.667 0.00 0.00 42.76 1.52
639 1270 4.501071 GGCAGTTATCCTGTCTTCGTTAA 58.499 43.478 0.00 0.00 42.76 2.01
640 1271 4.119442 GGCAGTTATCCTGTCTTCGTTA 57.881 45.455 0.00 0.00 42.76 3.18
641 1272 2.973945 GGCAGTTATCCTGTCTTCGTT 58.026 47.619 0.00 0.00 42.76 3.85
642 1273 2.674796 GGCAGTTATCCTGTCTTCGT 57.325 50.000 0.00 0.00 42.76 3.85
647 1278 3.596214 TCGAAAAGGCAGTTATCCTGTC 58.404 45.455 0.00 0.00 46.60 3.51
648 1279 3.695830 TCGAAAAGGCAGTTATCCTGT 57.304 42.857 0.00 0.00 43.55 4.00
649 1280 4.695455 TCTTTCGAAAAGGCAGTTATCCTG 59.305 41.667 12.41 0.00 44.53 3.86
650 1281 4.906618 TCTTTCGAAAAGGCAGTTATCCT 58.093 39.130 12.41 0.00 34.90 3.24
651 1282 5.411669 TCTTCTTTCGAAAAGGCAGTTATCC 59.588 40.000 12.41 0.00 0.00 2.59
652 1283 6.481954 TCTTCTTTCGAAAAGGCAGTTATC 57.518 37.500 12.41 0.00 0.00 1.75
653 1284 6.877611 TTCTTCTTTCGAAAAGGCAGTTAT 57.122 33.333 12.41 0.00 0.00 1.89
654 1285 6.687081 TTTCTTCTTTCGAAAAGGCAGTTA 57.313 33.333 12.41 0.00 0.00 2.24
655 1286 5.576447 TTTCTTCTTTCGAAAAGGCAGTT 57.424 34.783 12.41 0.00 0.00 3.16
656 1287 5.576447 TTTTCTTCTTTCGAAAAGGCAGT 57.424 34.783 12.41 0.00 35.95 4.40
662 1293 3.368495 GGCGCTTTTCTTCTTTCGAAAA 58.632 40.909 12.41 0.00 37.85 2.29
663 1294 2.601266 CGGCGCTTTTCTTCTTTCGAAA 60.601 45.455 10.71 10.71 0.00 3.46
664 1295 1.070175 CGGCGCTTTTCTTCTTTCGAA 60.070 47.619 7.64 0.00 0.00 3.71
665 1296 0.511221 CGGCGCTTTTCTTCTTTCGA 59.489 50.000 7.64 0.00 0.00 3.71
666 1297 0.511221 TCGGCGCTTTTCTTCTTTCG 59.489 50.000 7.64 0.00 0.00 3.46
667 1298 2.902065 ATCGGCGCTTTTCTTCTTTC 57.098 45.000 7.64 0.00 0.00 2.62
668 1299 3.127030 CCTAATCGGCGCTTTTCTTCTTT 59.873 43.478 7.64 0.00 0.00 2.52
669 1300 2.678336 CCTAATCGGCGCTTTTCTTCTT 59.322 45.455 7.64 0.00 0.00 2.52
670 1301 2.093658 TCCTAATCGGCGCTTTTCTTCT 60.094 45.455 7.64 0.00 0.00 2.85
671 1302 2.277084 TCCTAATCGGCGCTTTTCTTC 58.723 47.619 7.64 0.00 0.00 2.87
672 1303 2.396590 TCCTAATCGGCGCTTTTCTT 57.603 45.000 7.64 0.00 0.00 2.52
673 1304 2.622064 ATCCTAATCGGCGCTTTTCT 57.378 45.000 7.64 0.00 0.00 2.52
674 1305 3.692791 AAATCCTAATCGGCGCTTTTC 57.307 42.857 7.64 0.00 0.00 2.29
675 1306 3.314357 GGTAAATCCTAATCGGCGCTTTT 59.686 43.478 7.64 0.96 0.00 2.27
676 1307 2.876550 GGTAAATCCTAATCGGCGCTTT 59.123 45.455 7.64 0.44 0.00 3.51
677 1308 2.490991 GGTAAATCCTAATCGGCGCTT 58.509 47.619 7.64 0.09 0.00 4.68
678 1309 1.270678 GGGTAAATCCTAATCGGCGCT 60.271 52.381 7.64 0.00 36.25 5.92
679 1310 1.154197 GGGTAAATCCTAATCGGCGC 58.846 55.000 0.00 0.00 36.25 6.53
680 1311 1.425412 CGGGTAAATCCTAATCGGCG 58.575 55.000 0.00 0.00 36.25 6.46
681 1312 1.154197 GCGGGTAAATCCTAATCGGC 58.846 55.000 0.00 0.00 36.25 5.54
686 1317 2.303175 GCCATTGCGGGTAAATCCTAA 58.697 47.619 0.00 0.00 36.25 2.69
742 1373 1.531365 TTGCTGGGCTTGGACAAGG 60.531 57.895 13.41 0.00 38.80 3.61
743 1374 0.825010 AGTTGCTGGGCTTGGACAAG 60.825 55.000 7.67 7.67 41.24 3.16
744 1375 1.108727 CAGTTGCTGGGCTTGGACAA 61.109 55.000 0.00 0.00 0.00 3.18
745 1376 1.529010 CAGTTGCTGGGCTTGGACA 60.529 57.895 0.00 0.00 0.00 4.02
746 1377 2.924105 GCAGTTGCTGGGCTTGGAC 61.924 63.158 0.00 0.00 38.21 4.02
747 1378 2.598394 GCAGTTGCTGGGCTTGGA 60.598 61.111 0.00 0.00 38.21 3.53
748 1379 3.688159 GGCAGTTGCTGGGCTTGG 61.688 66.667 3.88 0.00 41.70 3.61
749 1380 4.047059 CGGCAGTTGCTGGGCTTG 62.047 66.667 5.01 0.00 43.47 4.01
854 1485 0.736325 CTACTTTGCCAGTCCCGTCG 60.736 60.000 0.00 0.00 36.88 5.12
856 1487 1.276622 ATCTACTTTGCCAGTCCCGT 58.723 50.000 0.00 0.00 36.88 5.28
880 1521 4.528531 GCCAAAAAGCGTCATTGAAAAA 57.471 36.364 0.00 0.00 0.00 1.94
929 1570 2.033141 GCTGCTGTTGCTGGGAGA 59.967 61.111 0.00 0.00 40.48 3.71
992 1633 0.463295 CATCCTCGACATGCTGCCTT 60.463 55.000 0.00 0.00 0.00 4.35
1169 1810 1.008745 GCACGAGTTAATTCGACGACG 60.009 52.381 24.82 0.00 43.03 5.12
1170 1811 2.026507 CAGCACGAGTTAATTCGACGAC 59.973 50.000 24.82 11.55 43.03 4.34
1171 1812 2.247637 CAGCACGAGTTAATTCGACGA 58.752 47.619 24.82 0.00 43.03 4.20
1172 1813 1.266404 GCAGCACGAGTTAATTCGACG 60.266 52.381 24.82 16.11 43.03 5.12
1173 1814 2.421168 GCAGCACGAGTTAATTCGAC 57.579 50.000 24.82 16.14 43.03 4.20
1186 1827 2.160417 AGCTAAATTCAGAACGCAGCAC 59.840 45.455 12.10 0.00 0.00 4.40
1189 1830 4.935885 AGAAGCTAAATTCAGAACGCAG 57.064 40.909 0.00 0.00 0.00 5.18
1192 1833 5.034554 TGCAAGAAGCTAAATTCAGAACG 57.965 39.130 0.00 0.00 45.94 3.95
1403 2077 5.123344 ACTCCAAAAGATCGAAAATTACCCG 59.877 40.000 0.00 0.00 0.00 5.28
1415 2089 9.912634 TGAAAATTACAATCACTCCAAAAGATC 57.087 29.630 0.00 0.00 0.00 2.75
1470 2144 1.402456 CCTCCAACTCGACCTTGTACG 60.402 57.143 0.00 0.00 0.00 3.67
1478 2152 2.572284 CGGGTCCTCCAACTCGAC 59.428 66.667 0.00 0.00 46.09 4.20
1492 2166 1.486726 ACTCCTAGATTTTCCAGCGGG 59.513 52.381 0.00 0.00 0.00 6.13
1597 2271 5.735354 GCATACCTTCATTCCTTCAGCAATG 60.735 44.000 0.00 0.00 0.00 2.82
1634 2308 6.421202 CCAAGAAATATAGAGAACTACGGTGC 59.579 42.308 0.00 0.00 0.00 5.01
1635 2309 7.490000 ACCAAGAAATATAGAGAACTACGGTG 58.510 38.462 0.00 0.00 0.00 4.94
1636 2310 7.657023 ACCAAGAAATATAGAGAACTACGGT 57.343 36.000 0.00 0.00 0.00 4.83
1637 2311 8.818057 CAAACCAAGAAATATAGAGAACTACGG 58.182 37.037 0.00 0.00 0.00 4.02
1638 2312 8.818057 CCAAACCAAGAAATATAGAGAACTACG 58.182 37.037 0.00 0.00 0.00 3.51
1736 2411 0.254178 AGTGGCCCTGAGCATAAGTG 59.746 55.000 0.00 0.00 46.50 3.16
1739 2414 0.253044 GTGAGTGGCCCTGAGCATAA 59.747 55.000 0.00 0.00 46.50 1.90
1758 2433 2.165845 CCGGGTAAACTGTGTCTAGAGG 59.834 54.545 0.00 0.00 0.00 3.69
1770 2445 0.519961 GTGCACACATCCGGGTAAAC 59.480 55.000 13.17 0.00 0.00 2.01
1777 2452 3.792047 CCGCTGTGCACACATCCG 61.792 66.667 17.42 15.29 41.01 4.18
1911 2606 5.491982 AGGAGACAACATTCACATAGTTCC 58.508 41.667 0.00 0.00 0.00 3.62
1916 2611 5.817296 GTGCATAGGAGACAACATTCACATA 59.183 40.000 0.00 0.00 0.00 2.29
1920 2615 3.008923 TGGTGCATAGGAGACAACATTCA 59.991 43.478 0.00 0.00 0.00 2.57
1967 2662 1.064611 AGCAAGCTCCCTCGTCTACTA 60.065 52.381 0.00 0.00 0.00 1.82
2022 2717 2.093869 AGAAAGCATGCGCCAAAATCAT 60.094 40.909 13.01 0.00 39.83 2.45
2073 2770 2.490328 AAAAATGTATGCCGCATCCG 57.510 45.000 9.71 0.00 0.00 4.18
2137 2840 5.156608 TGCTAGGTTAAGTCTTACAACCC 57.843 43.478 11.99 2.43 42.25 4.11
2140 2843 8.911918 TTGAAATGCTAGGTTAAGTCTTACAA 57.088 30.769 0.00 0.00 0.00 2.41
2225 4966 3.070018 GAGCATGCACTTCTACAGTTGT 58.930 45.455 21.98 0.00 30.92 3.32
2226 4967 3.332919 AGAGCATGCACTTCTACAGTTG 58.667 45.455 21.98 0.00 30.92 3.16
2227 4968 3.692257 AGAGCATGCACTTCTACAGTT 57.308 42.857 21.98 0.00 30.92 3.16
2228 4969 3.430098 GCTAGAGCATGCACTTCTACAGT 60.430 47.826 22.83 0.00 41.59 3.55
2229 4970 3.122297 GCTAGAGCATGCACTTCTACAG 58.878 50.000 22.83 14.19 41.59 2.74
2230 4971 2.159043 GGCTAGAGCATGCACTTCTACA 60.159 50.000 22.83 3.70 44.36 2.74
2231 4972 2.159043 TGGCTAGAGCATGCACTTCTAC 60.159 50.000 22.83 12.67 44.36 2.59
2232 4973 2.110578 TGGCTAGAGCATGCACTTCTA 58.889 47.619 22.83 17.21 44.36 2.10
2233 4974 0.907486 TGGCTAGAGCATGCACTTCT 59.093 50.000 22.83 17.00 44.36 2.85
2234 4975 1.742761 TTGGCTAGAGCATGCACTTC 58.257 50.000 22.83 14.30 44.36 3.01
2235 4976 2.022195 CATTGGCTAGAGCATGCACTT 58.978 47.619 22.83 8.33 44.36 3.16
2236 4977 1.676746 CATTGGCTAGAGCATGCACT 58.323 50.000 21.45 21.45 44.36 4.40
2237 4978 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57
2238 4979 2.411535 GCATTGGCTAGAGCATGCA 58.588 52.632 21.98 0.00 44.74 3.96
2239 4980 0.742505 TTGCATTGGCTAGAGCATGC 59.257 50.000 10.51 10.51 45.25 4.06
2240 4981 1.066605 GGTTGCATTGGCTAGAGCATG 59.933 52.381 3.54 0.90 44.36 4.06
2241 4982 1.341285 TGGTTGCATTGGCTAGAGCAT 60.341 47.619 3.54 0.00 44.36 3.79
2242 4983 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26
2243 4984 1.176527 TTGGTTGCATTGGCTAGAGC 58.823 50.000 0.00 0.00 41.91 4.09
2244 4985 3.507233 TCTTTTGGTTGCATTGGCTAGAG 59.493 43.478 0.00 0.00 41.91 2.43
2245 4986 3.255642 GTCTTTTGGTTGCATTGGCTAGA 59.744 43.478 0.00 0.00 41.91 2.43
2246 4987 3.578688 GTCTTTTGGTTGCATTGGCTAG 58.421 45.455 0.00 0.00 41.91 3.42
2247 4988 2.298729 GGTCTTTTGGTTGCATTGGCTA 59.701 45.455 0.00 0.00 41.91 3.93
2248 4989 1.070601 GGTCTTTTGGTTGCATTGGCT 59.929 47.619 0.00 0.00 41.91 4.75
2249 4990 1.511850 GGTCTTTTGGTTGCATTGGC 58.488 50.000 0.00 0.00 41.68 4.52
2250 4991 1.339610 TCGGTCTTTTGGTTGCATTGG 59.660 47.619 0.00 0.00 0.00 3.16
2251 4992 2.791383 TCGGTCTTTTGGTTGCATTG 57.209 45.000 0.00 0.00 0.00 2.82
2252 4993 3.057315 CAGATCGGTCTTTTGGTTGCATT 60.057 43.478 0.00 0.00 30.42 3.56
2253 4994 2.489329 CAGATCGGTCTTTTGGTTGCAT 59.511 45.455 0.00 0.00 30.42 3.96
2254 4995 1.879380 CAGATCGGTCTTTTGGTTGCA 59.121 47.619 0.00 0.00 30.42 4.08
2255 4996 2.151202 TCAGATCGGTCTTTTGGTTGC 58.849 47.619 0.00 0.00 30.42 4.17
2256 4997 3.127548 CCATCAGATCGGTCTTTTGGTTG 59.872 47.826 13.38 1.42 32.74 3.77
2257 4998 3.009033 TCCATCAGATCGGTCTTTTGGTT 59.991 43.478 18.67 0.00 36.21 3.67
2258 4999 2.571653 TCCATCAGATCGGTCTTTTGGT 59.428 45.455 18.67 0.00 36.21 3.67
2259 5000 3.266510 TCCATCAGATCGGTCTTTTGG 57.733 47.619 14.89 14.89 36.16 3.28
2260 5001 4.507710 TCTTCCATCAGATCGGTCTTTTG 58.492 43.478 0.00 0.00 30.42 2.44
2261 5002 4.467795 TCTCTTCCATCAGATCGGTCTTTT 59.532 41.667 0.00 0.00 30.42 2.27
2262 5003 4.026744 TCTCTTCCATCAGATCGGTCTTT 58.973 43.478 0.00 0.00 30.42 2.52
2263 5004 3.383185 GTCTCTTCCATCAGATCGGTCTT 59.617 47.826 0.00 0.00 30.42 3.01
2264 5005 2.955660 GTCTCTTCCATCAGATCGGTCT 59.044 50.000 0.00 0.00 34.14 3.85
2265 5006 2.955660 AGTCTCTTCCATCAGATCGGTC 59.044 50.000 0.00 0.00 0.00 4.79
2266 5007 3.025322 AGTCTCTTCCATCAGATCGGT 57.975 47.619 0.00 0.00 0.00 4.69
2267 5008 3.505680 CCTAGTCTCTTCCATCAGATCGG 59.494 52.174 0.00 0.00 0.00 4.18
2268 5009 3.057596 GCCTAGTCTCTTCCATCAGATCG 60.058 52.174 0.00 0.00 0.00 3.69
2269 5010 3.894427 TGCCTAGTCTCTTCCATCAGATC 59.106 47.826 0.00 0.00 0.00 2.75
2270 5011 3.921104 TGCCTAGTCTCTTCCATCAGAT 58.079 45.455 0.00 0.00 0.00 2.90
2271 5012 3.388552 TGCCTAGTCTCTTCCATCAGA 57.611 47.619 0.00 0.00 0.00 3.27
2272 5013 3.196469 TGTTGCCTAGTCTCTTCCATCAG 59.804 47.826 0.00 0.00 0.00 2.90
2273 5014 3.055819 GTGTTGCCTAGTCTCTTCCATCA 60.056 47.826 0.00 0.00 0.00 3.07
2274 5015 3.055819 TGTGTTGCCTAGTCTCTTCCATC 60.056 47.826 0.00 0.00 0.00 3.51
2275 5016 2.906389 TGTGTTGCCTAGTCTCTTCCAT 59.094 45.455 0.00 0.00 0.00 3.41
2276 5017 2.325484 TGTGTTGCCTAGTCTCTTCCA 58.675 47.619 0.00 0.00 0.00 3.53
2277 5018 3.618690 ATGTGTTGCCTAGTCTCTTCC 57.381 47.619 0.00 0.00 0.00 3.46
2278 5019 6.418226 CGTATAATGTGTTGCCTAGTCTCTTC 59.582 42.308 0.00 0.00 0.00 2.87
2279 5020 6.127423 ACGTATAATGTGTTGCCTAGTCTCTT 60.127 38.462 0.00 0.00 0.00 2.85
2280 5021 5.360144 ACGTATAATGTGTTGCCTAGTCTCT 59.640 40.000 0.00 0.00 0.00 3.10
2281 5022 5.459107 CACGTATAATGTGTTGCCTAGTCTC 59.541 44.000 0.00 0.00 30.72 3.36
2282 5023 5.126545 TCACGTATAATGTGTTGCCTAGTCT 59.873 40.000 6.33 0.00 36.53 3.24
2283 5024 5.345702 TCACGTATAATGTGTTGCCTAGTC 58.654 41.667 6.33 0.00 36.53 2.59
2284 5025 5.333299 TCACGTATAATGTGTTGCCTAGT 57.667 39.130 6.33 0.00 36.53 2.57
2285 5026 5.579119 TGTTCACGTATAATGTGTTGCCTAG 59.421 40.000 6.33 0.00 36.53 3.02
2286 5027 5.480205 TGTTCACGTATAATGTGTTGCCTA 58.520 37.500 6.33 0.00 36.53 3.93
2287 5028 4.320023 TGTTCACGTATAATGTGTTGCCT 58.680 39.130 6.33 0.00 36.53 4.75
2288 5029 4.671880 TGTTCACGTATAATGTGTTGCC 57.328 40.909 6.33 0.00 36.53 4.52
2289 5030 5.685841 AGTTGTTCACGTATAATGTGTTGC 58.314 37.500 6.33 0.00 36.53 4.17
2290 5031 9.098746 GTAAAGTTGTTCACGTATAATGTGTTG 57.901 33.333 6.33 0.00 36.53 3.33
2291 5032 9.048446 AGTAAAGTTGTTCACGTATAATGTGTT 57.952 29.630 6.33 0.00 36.53 3.32
2292 5033 8.597662 AGTAAAGTTGTTCACGTATAATGTGT 57.402 30.769 6.33 0.00 36.53 3.72
2299 5040 8.932791 CAAGGATAAGTAAAGTTGTTCACGTAT 58.067 33.333 0.00 0.00 0.00 3.06
2300 5041 7.095523 GCAAGGATAAGTAAAGTTGTTCACGTA 60.096 37.037 0.00 0.00 0.00 3.57
2301 5042 6.293244 GCAAGGATAAGTAAAGTTGTTCACGT 60.293 38.462 0.00 0.00 0.00 4.49
2302 5043 6.077838 GCAAGGATAAGTAAAGTTGTTCACG 58.922 40.000 0.00 0.00 0.00 4.35
2303 5044 6.966021 TGCAAGGATAAGTAAAGTTGTTCAC 58.034 36.000 0.00 0.00 0.00 3.18
2304 5045 7.575414 TTGCAAGGATAAGTAAAGTTGTTCA 57.425 32.000 0.00 0.00 0.00 3.18
2305 5046 8.865590 TTTTGCAAGGATAAGTAAAGTTGTTC 57.134 30.769 0.00 0.00 0.00 3.18
2306 5047 9.830975 AATTTTGCAAGGATAAGTAAAGTTGTT 57.169 25.926 0.00 0.00 0.00 2.83
2347 5088 8.630037 AGCCCTCTGGTATTTAAATTAAATTCG 58.370 33.333 15.14 3.86 39.06 3.34
2402 5143 5.963004 CGTGAAAATCGAAGTTTTGTCTGAA 59.037 36.000 1.59 0.00 31.80 3.02
2625 5387 7.198390 TCCGGTATTTTAGTTCATACGAAGAG 58.802 38.462 0.00 0.00 0.00 2.85
2638 5400 3.118371 ACTGAAGCCCTCCGGTATTTTAG 60.118 47.826 0.00 0.00 0.00 1.85
2758 5620 9.383519 AGCTCATTTTCTATTTTGAACGAGATA 57.616 29.630 0.00 0.00 0.00 1.98
2899 5775 2.283145 ACCTATAGTGGGCGTCGTAT 57.717 50.000 0.00 0.00 0.00 3.06
2954 5830 6.095300 TCAGAATTGTTTGTGTCTGTCAATGT 59.905 34.615 0.00 0.00 38.87 2.71
2955 5831 6.497437 TCAGAATTGTTTGTGTCTGTCAATG 58.503 36.000 0.00 0.00 38.87 2.82
2956 5832 6.698008 TCAGAATTGTTTGTGTCTGTCAAT 57.302 33.333 0.00 0.00 38.87 2.57
2957 5833 6.507958 TTCAGAATTGTTTGTGTCTGTCAA 57.492 33.333 0.00 0.00 38.87 3.18
2958 5834 6.321717 GTTTCAGAATTGTTTGTGTCTGTCA 58.678 36.000 0.00 0.00 38.87 3.58
2959 5835 5.743872 GGTTTCAGAATTGTTTGTGTCTGTC 59.256 40.000 0.00 0.00 38.87 3.51
2960 5836 5.418840 AGGTTTCAGAATTGTTTGTGTCTGT 59.581 36.000 0.00 0.00 38.87 3.41
2961 5837 5.894807 AGGTTTCAGAATTGTTTGTGTCTG 58.105 37.500 0.00 0.00 39.09 3.51
2962 5838 7.639113 TTAGGTTTCAGAATTGTTTGTGTCT 57.361 32.000 0.00 0.00 0.00 3.41
2963 5839 7.222031 GGTTTAGGTTTCAGAATTGTTTGTGTC 59.778 37.037 0.00 0.00 0.00 3.67
2964 5840 7.039270 GGTTTAGGTTTCAGAATTGTTTGTGT 58.961 34.615 0.00 0.00 0.00 3.72
3146 6022 5.677319 TCTTTGGTAGGAACATACAGAGG 57.323 43.478 0.00 0.00 0.00 3.69
3190 6066 7.515586 TCATGATCTTCAATCTAGAAGGCATT 58.484 34.615 0.00 0.00 44.01 3.56
3252 6128 1.990799 TCATGTTTCCGACAGCGTAG 58.009 50.000 0.00 0.00 42.62 3.51
3297 6173 1.213296 TCCTAACCATGCCTTCCCTC 58.787 55.000 0.00 0.00 0.00 4.30
3393 6269 9.793252 ATATTTGCATGATTAGTCACAAAGAAC 57.207 29.630 0.00 0.00 35.27 3.01
3507 6383 8.896744 CATAACTCTTGAAATTATCCAGCAGAA 58.103 33.333 0.00 0.00 0.00 3.02
3669 6545 4.945246 AGCTTGTTTCTCGTCAAAGTAGA 58.055 39.130 0.00 0.00 0.00 2.59
4108 6984 4.152647 TCATAGGTCCATGGTAGCTACAG 58.847 47.826 24.75 13.58 30.31 2.74
4111 6987 6.384015 CCATATTCATAGGTCCATGGTAGCTA 59.616 42.308 12.58 16.69 0.00 3.32
4163 7039 9.627123 TCTCCTTTGAGTTCTGAAAATTAGAAA 57.373 29.630 0.00 0.00 39.75 2.52
4173 7049 3.833070 GGTACCTCTCCTTTGAGTTCTGA 59.167 47.826 4.06 0.00 39.75 3.27
4281 7157 4.180817 ACACAAAGTTTTGCTTAGTTGGC 58.819 39.130 4.58 0.00 41.79 4.52
4282 7158 7.033185 AGTTACACAAAGTTTTGCTTAGTTGG 58.967 34.615 4.58 0.00 41.79 3.77
4283 7159 9.221775 CTAGTTACACAAAGTTTTGCTTAGTTG 57.778 33.333 4.58 0.00 41.79 3.16
4284 7160 7.913821 GCTAGTTACACAAAGTTTTGCTTAGTT 59.086 33.333 4.58 0.00 41.79 2.24
4285 7161 7.415229 GCTAGTTACACAAAGTTTTGCTTAGT 58.585 34.615 4.58 2.29 41.79 2.24
4286 7162 6.856426 GGCTAGTTACACAAAGTTTTGCTTAG 59.144 38.462 4.58 0.92 41.79 2.18
4287 7163 6.544564 AGGCTAGTTACACAAAGTTTTGCTTA 59.455 34.615 4.58 0.00 41.79 3.09
4288 7164 5.359860 AGGCTAGTTACACAAAGTTTTGCTT 59.640 36.000 4.58 0.00 41.79 3.91
4289 7165 4.887655 AGGCTAGTTACACAAAGTTTTGCT 59.112 37.500 4.58 0.00 41.79 3.91
4290 7166 5.183014 AGGCTAGTTACACAAAGTTTTGC 57.817 39.130 4.58 0.00 41.79 3.68
4291 7167 7.544217 ACAAAAGGCTAGTTACACAAAGTTTTG 59.456 33.333 3.17 3.17 43.62 2.44
4292 7168 7.544217 CACAAAAGGCTAGTTACACAAAGTTTT 59.456 33.333 0.00 0.00 0.00 2.43
4293 7169 7.033185 CACAAAAGGCTAGTTACACAAAGTTT 58.967 34.615 0.00 0.00 0.00 2.66
4294 7170 6.560711 CACAAAAGGCTAGTTACACAAAGTT 58.439 36.000 0.00 0.00 0.00 2.66
4295 7171 5.449999 GCACAAAAGGCTAGTTACACAAAGT 60.450 40.000 0.00 0.00 0.00 2.66
4296 7172 4.976116 GCACAAAAGGCTAGTTACACAAAG 59.024 41.667 0.00 0.00 0.00 2.77
4297 7173 4.642885 AGCACAAAAGGCTAGTTACACAAA 59.357 37.500 0.00 0.00 40.47 2.83
4298 7174 4.036262 CAGCACAAAAGGCTAGTTACACAA 59.964 41.667 0.00 0.00 40.23 3.33
4299 7175 3.563808 CAGCACAAAAGGCTAGTTACACA 59.436 43.478 0.00 0.00 40.23 3.72
4300 7176 3.564225 ACAGCACAAAAGGCTAGTTACAC 59.436 43.478 0.00 0.00 40.23 2.90
4301 7177 3.815809 ACAGCACAAAAGGCTAGTTACA 58.184 40.909 0.00 0.00 40.23 2.41
4320 7196 7.936496 TTATTAGAATCATGCAGTCCAAACA 57.064 32.000 0.00 0.00 0.00 2.83
4342 7218 4.697828 TGCAATTAACTTGACGCCAGATTA 59.302 37.500 0.00 0.00 36.97 1.75
4473 7349 8.918202 ATAGGAAAATTGTACTTCACAGAACA 57.082 30.769 0.00 0.00 38.72 3.18
4512 7388 5.766670 TCAATAGCTGCCTGAAATATCCAAG 59.233 40.000 0.00 0.00 0.00 3.61
4635 7511 6.096695 GCACCGTAAATGAAACCATTGTATT 58.903 36.000 0.00 0.00 34.70 1.89
4640 7516 4.592485 TTGCACCGTAAATGAAACCATT 57.408 36.364 0.00 0.00 35.90 3.16
4713 7589 9.887629 CTCGGTATACTATAGTCCTTCAGATAA 57.112 37.037 9.12 0.00 0.00 1.75
4715 7591 7.920227 ACTCGGTATACTATAGTCCTTCAGAT 58.080 38.462 9.12 0.00 0.00 2.90
4770 7647 8.525290 AATTAGCAAGATGGCTATTACAAACT 57.475 30.769 0.00 0.00 45.18 2.66
4775 7652 7.445402 TCCAGAAATTAGCAAGATGGCTATTAC 59.555 37.037 0.00 0.00 45.18 1.89
4781 7658 4.036144 GTCTCCAGAAATTAGCAAGATGGC 59.964 45.833 0.00 0.00 0.00 4.40
4864 7742 2.869801 GCAATGAAATCGGGATGACGTA 59.130 45.455 0.00 0.00 34.94 3.57
4867 7745 2.423185 TGTGCAATGAAATCGGGATGAC 59.577 45.455 0.00 0.00 0.00 3.06
4920 7800 0.533531 TGTGCACTGCAGTCCTTCTG 60.534 55.000 18.64 5.82 46.12 3.02
4921 7801 0.181114 TTGTGCACTGCAGTCCTTCT 59.819 50.000 18.64 0.00 40.08 2.85
4926 7806 2.849880 TTTTCTTGTGCACTGCAGTC 57.150 45.000 18.64 12.59 40.08 3.51
4956 7836 4.275689 TGTCTTATTGTGAGTTGTTGGCAG 59.724 41.667 0.00 0.00 0.00 4.85
4959 7839 6.969366 TGATTGTCTTATTGTGAGTTGTTGG 58.031 36.000 0.00 0.00 0.00 3.77
4975 7855 5.163622 CGGCATTTTGGAATACTGATTGTCT 60.164 40.000 0.00 0.00 0.00 3.41
5024 7904 3.947910 CAAATCATCCACTGCTTTGGT 57.052 42.857 4.33 0.00 37.33 3.67
5027 7907 2.532843 AGCCAAATCATCCACTGCTTT 58.467 42.857 0.00 0.00 0.00 3.51
5031 7911 3.581755 CACAAAGCCAAATCATCCACTG 58.418 45.455 0.00 0.00 0.00 3.66
5036 7916 2.738314 GGTTGCACAAAGCCAAATCATC 59.262 45.455 0.00 0.00 44.83 2.92
5048 7928 1.795768 GAGACATCGAGGTTGCACAA 58.204 50.000 3.38 0.00 0.00 3.33
5079 7959 2.068519 TCTCTGCAGCAACATAACGTG 58.931 47.619 9.47 0.00 0.00 4.49
5082 7962 1.394917 CGGTCTCTGCAGCAACATAAC 59.605 52.381 9.47 0.00 0.00 1.89
5085 7965 1.376424 CCGGTCTCTGCAGCAACAT 60.376 57.895 9.47 0.00 0.00 2.71
5091 7971 1.215647 GTACACCCGGTCTCTGCAG 59.784 63.158 7.63 7.63 0.00 4.41
5241 8125 1.945394 GAGCCTGTGGATTGCAGTATG 59.055 52.381 0.00 0.00 40.87 2.39
5260 8144 2.971660 TTGTGGTGAACTCGAGTTGA 57.028 45.000 34.23 24.49 38.56 3.18
5283 8167 1.700042 ATAGCTGCACCAGTAGGCCC 61.700 60.000 0.00 0.00 39.06 5.80
5298 8182 5.875359 ACCTTGACTACTACAAAAGCATAGC 59.125 40.000 0.00 0.00 0.00 2.97
5314 8198 1.767759 AAAGCACAAGCACCTTGACT 58.232 45.000 11.56 5.88 43.42 3.41
5344 8228 6.433404 GCAGTATCCATGGATCAAGAAATCAT 59.567 38.462 30.61 5.89 36.17 2.45
5345 8229 5.766670 GCAGTATCCATGGATCAAGAAATCA 59.233 40.000 30.61 7.25 36.17 2.57
5455 8339 1.881973 TCAGCACCAATCTGAACAAGC 59.118 47.619 0.00 0.00 37.61 4.01
5457 8341 2.929641 TGTCAGCACCAATCTGAACAA 58.070 42.857 0.00 0.00 41.66 2.83
5505 8389 4.552767 CGGCATTGTTAGCTATTAGTGTGC 60.553 45.833 0.00 1.29 0.00 4.57
5576 8460 5.455392 CATGTAACTGAACCAAAAGAGCTG 58.545 41.667 0.00 0.00 0.00 4.24
5681 8568 4.201744 GCCATAACTTGCATTGTCATTTGC 60.202 41.667 0.00 2.16 39.33 3.68
5731 8618 2.496899 TTCCAGAAGCCATCAAGTCC 57.503 50.000 0.00 0.00 0.00 3.85
5817 8704 8.448615 AGTCAGCGTTATTAATTGGTTTAGTTC 58.551 33.333 0.00 0.00 0.00 3.01
5842 8729 2.391616 TGCAGAGTTAGTGATGCCAG 57.608 50.000 0.00 0.00 37.89 4.85
5868 8755 2.093890 TGACATATTTGTGCAGGGCAG 58.906 47.619 0.00 0.00 40.08 4.85
5883 8770 2.575532 CAACACCTCACAACCTGACAT 58.424 47.619 0.00 0.00 0.00 3.06
5983 8870 2.279037 ATTGGGGGCCTTACGCGAAT 62.279 55.000 15.93 0.00 38.94 3.34
6067 8956 9.708092 TGAAGAGAAGATGCATCTTTCTATATG 57.292 33.333 35.91 0.00 46.47 1.78
6072 8961 9.275398 GATATTGAAGAGAAGATGCATCTTTCT 57.725 33.333 35.91 31.86 46.47 2.52
6073 8962 8.222433 CGATATTGAAGAGAAGATGCATCTTTC 58.778 37.037 35.91 30.63 46.47 2.62
6113 9002 0.252197 ATCGGACCAAGGTAAGCACC 59.748 55.000 0.00 0.00 46.19 5.01
6164 9053 2.616969 GCTCCAAACAAGAGCGTGA 58.383 52.632 0.00 0.00 46.58 4.35
6197 9106 4.081198 TGCCCACAAAATTATTCATCCCAC 60.081 41.667 0.00 0.00 0.00 4.61
6259 9195 5.551760 AGAGCAATGTTTAATCGGAAGTG 57.448 39.130 0.00 0.00 0.00 3.16
6542 9496 7.148474 ACAGGCACACGAAATTAATTAGTACTG 60.148 37.037 5.39 12.10 0.00 2.74
6543 9497 6.877322 ACAGGCACACGAAATTAATTAGTACT 59.123 34.615 0.01 0.00 0.00 2.73
6544 9498 6.959311 CACAGGCACACGAAATTAATTAGTAC 59.041 38.462 0.01 0.00 0.00 2.73
6545 9499 6.402766 GCACAGGCACACGAAATTAATTAGTA 60.403 38.462 0.01 0.00 40.72 1.82
6546 9500 5.619086 GCACAGGCACACGAAATTAATTAGT 60.619 40.000 0.01 2.45 40.72 2.24
6547 9501 4.793216 GCACAGGCACACGAAATTAATTAG 59.207 41.667 0.01 1.82 40.72 1.73
6548 9502 4.670478 CGCACAGGCACACGAAATTAATTA 60.670 41.667 0.01 0.00 41.24 1.40
6549 9503 3.574614 GCACAGGCACACGAAATTAATT 58.425 40.909 0.00 0.00 40.72 1.40
6570 9524 1.766461 AAGGCTCCACTATCCCCCG 60.766 63.158 0.00 0.00 0.00 5.73
6574 9528 1.709994 CCCCCAAGGCTCCACTATCC 61.710 65.000 0.00 0.00 0.00 2.59
6594 9549 5.239306 CGTGCAAAGATACCATATGTCCAAT 59.761 40.000 1.24 0.00 0.00 3.16
6634 9589 1.470098 GATGTGCCAGTGTCATGTTCC 59.530 52.381 0.00 0.00 0.00 3.62
6759 9734 1.826487 GCCACTTTCCACCCGTGTT 60.826 57.895 0.00 0.00 0.00 3.32
6811 9786 4.444838 CGGCGGGGTCGACATGAA 62.445 66.667 18.91 0.00 46.65 2.57
6926 9901 4.418401 CGTTTGGTGCGGGGCATG 62.418 66.667 0.00 0.00 41.91 4.06
7002 9977 4.785453 CCTGAGCGGTTCCTGGCC 62.785 72.222 0.00 0.00 0.00 5.36
7017 9992 3.382832 CCCGACGAGTTCCAGCCT 61.383 66.667 0.00 0.00 0.00 4.58
7020 9995 1.437986 GGATCCCGACGAGTTCCAG 59.562 63.158 0.00 0.00 0.00 3.86
7044 10019 0.404426 TCGGGAGAGACAGGAAGACA 59.596 55.000 0.00 0.00 0.00 3.41
7050 10025 1.395826 GGGACATCGGGAGAGACAGG 61.396 65.000 0.00 0.00 45.48 4.00
7076 10051 0.027063 CGACTTCAACGTGCGGTTTT 59.973 50.000 0.00 0.00 36.49 2.43
7104 10079 3.353836 CTGGGCGAAACCACCGTG 61.354 66.667 0.00 0.00 42.05 4.94
7143 10118 4.047059 TTCGTCCCACGCCGAGTC 62.047 66.667 0.00 0.00 42.21 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.