Multiple sequence alignment - TraesCS2A01G311400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G311400 chr2A 100.000 2503 0 0 1 2503 535148051 535145549 0.000000e+00 4623.0
1 TraesCS2A01G311400 chr2A 92.568 1036 64 6 695 1718 590983811 590984845 0.000000e+00 1474.0
2 TraesCS2A01G311400 chr2A 99.401 334 2 0 2170 2503 359175588 359175255 7.660000e-170 606.0
3 TraesCS2A01G311400 chr2A 98.827 341 3 1 2164 2503 440074789 440075129 7.660000e-170 606.0
4 TraesCS2A01G311400 chr2A 99.399 333 2 0 2171 2503 578390479 578390811 2.750000e-169 604.0
5 TraesCS2A01G311400 chr2B 94.556 2186 83 17 1 2172 470393250 470391087 0.000000e+00 3345.0
6 TraesCS2A01G311400 chr2B 90.518 1023 70 5 695 1713 526755064 526756063 0.000000e+00 1327.0
7 TraesCS2A01G311400 chr2B 92.629 407 18 8 2102 2503 405648479 405648080 2.160000e-160 575.0
8 TraesCS2A01G311400 chr2B 92.754 69 5 0 2102 2170 725944654 725944586 1.580000e-17 100.0
9 TraesCS2A01G311400 chr2D 94.746 1713 54 8 462 2172 397900921 397899243 0.000000e+00 2632.0
10 TraesCS2A01G311400 chr2D 93.043 1035 61 6 695 1719 446921516 446920483 0.000000e+00 1502.0
11 TraesCS2A01G311400 chr2D 92.149 484 24 6 4 476 397901420 397900940 0.000000e+00 671.0
12 TraesCS2A01G311400 chr7A 99.701 334 1 0 2170 2503 319591999 319591666 1.650000e-171 612.0
13 TraesCS2A01G311400 chr7A 99.401 334 2 0 2170 2503 556162626 556162959 7.660000e-170 606.0
14 TraesCS2A01G311400 chr6A 99.401 334 2 0 2170 2503 173329150 173329483 7.660000e-170 606.0
15 TraesCS2A01G311400 chr1A 99.401 334 2 0 2170 2503 341230728 341231061 7.660000e-170 606.0
16 TraesCS2A01G311400 chr1A 99.401 334 1 1 2170 2503 49248685 49249017 2.750000e-169 604.0
17 TraesCS2A01G311400 chr5D 96.970 66 2 0 2107 2172 554385549 554385614 7.320000e-21 111.0
18 TraesCS2A01G311400 chr4B 94.286 70 4 0 2103 2172 630291920 630291989 9.470000e-20 108.0
19 TraesCS2A01G311400 chr4B 94.286 70 4 0 2103 2172 630304119 630304188 9.470000e-20 108.0
20 TraesCS2A01G311400 chr3D 91.549 71 6 0 2102 2172 36631762 36631832 5.700000e-17 99.0
21 TraesCS2A01G311400 chr6D 85.106 94 10 4 2102 2193 418280286 418280195 2.650000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G311400 chr2A 535145549 535148051 2502 True 4623.0 4623 100.0000 1 2503 1 chr2A.!!$R2 2502
1 TraesCS2A01G311400 chr2A 590983811 590984845 1034 False 1474.0 1474 92.5680 695 1718 1 chr2A.!!$F3 1023
2 TraesCS2A01G311400 chr2B 470391087 470393250 2163 True 3345.0 3345 94.5560 1 2172 1 chr2B.!!$R2 2171
3 TraesCS2A01G311400 chr2B 526755064 526756063 999 False 1327.0 1327 90.5180 695 1713 1 chr2B.!!$F1 1018
4 TraesCS2A01G311400 chr2D 397899243 397901420 2177 True 1651.5 2632 93.4475 4 2172 2 chr2D.!!$R2 2168
5 TraesCS2A01G311400 chr2D 446920483 446921516 1033 True 1502.0 1502 93.0430 695 1719 1 chr2D.!!$R1 1024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 805 0.602638 TTTACTGTCGCTGTGCCCTG 60.603 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2394 2468 0.026803 GCTAAAGCGTGCGGAGAATG 59.973 55.0 0.0 0.0 0.0 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 64 1.227147 CGATCGCCCTTCGCCTTTA 60.227 57.895 0.26 0.00 38.27 1.85
63 65 0.808453 CGATCGCCCTTCGCCTTTAA 60.808 55.000 0.26 0.00 38.27 1.52
65 67 1.063616 GATCGCCCTTCGCCTTTAAAC 59.936 52.381 0.00 0.00 38.27 2.01
89 91 0.815734 CTCTTCCTTCGCCGACCTAA 59.184 55.000 0.00 0.00 0.00 2.69
151 153 2.204291 ACAGGCCTCCCCATTCCA 60.204 61.111 0.00 0.00 35.39 3.53
289 291 1.609501 CCTCTCCCAGTCGTCCCAA 60.610 63.158 0.00 0.00 0.00 4.12
329 331 1.955157 CATAGCGCTCCTCTGCTGC 60.955 63.158 16.34 0.00 42.46 5.25
416 428 1.509463 CTCCTGCCGCGTACAAGTA 59.491 57.895 4.92 0.00 0.00 2.24
476 520 2.522436 CATCGGGTAGGCCGGGTA 60.522 66.667 2.18 0.00 35.96 3.69
507 551 4.291783 CCACGCAAAACTTTCGGATTTTA 58.708 39.130 0.00 0.00 0.00 1.52
578 622 2.872388 CGTCACCTGTGCCCTGTCT 61.872 63.158 0.00 0.00 0.00 3.41
754 805 0.602638 TTTACTGTCGCTGTGCCCTG 60.603 55.000 0.00 0.00 0.00 4.45
767 818 2.974794 TGTGCCCTGCAGATATCACTAT 59.025 45.455 17.39 0.00 40.08 2.12
1024 1080 3.070159 GCAGGCTCACATTCCTACATCTA 59.930 47.826 0.00 0.00 0.00 1.98
1025 1081 4.626042 CAGGCTCACATTCCTACATCTAC 58.374 47.826 0.00 0.00 0.00 2.59
1119 1175 5.007528 GGCTCTATCTGAAGCTTTGTCATTC 59.992 44.000 0.00 0.00 0.00 2.67
1262 1321 7.727331 ATGCACAGATCTTAAGATTAAGCTC 57.273 36.000 18.88 6.43 39.90 4.09
1766 1838 8.452534 CAAGTTGGTGTTGTACTGTAAAAACTA 58.547 33.333 12.93 2.46 0.00 2.24
1832 1905 9.288576 TGAAATCTTCACAACTATGAAATGAGT 57.711 29.630 0.00 0.00 38.12 3.41
1834 1907 7.621428 ATCTTCACAACTATGAAATGAGTGG 57.379 36.000 0.00 0.00 38.12 4.00
1906 1979 9.128404 CTTATTATATGTATAGGCACCGTCCTA 57.872 37.037 0.00 0.00 42.45 2.94
1927 2000 8.756927 GTCCTATAAGGTAGGAAAGTACTGTTT 58.243 37.037 5.44 0.00 44.55 2.83
2000 2073 8.370940 TCCTTGTCAGAGTCCATATGAAATATC 58.629 37.037 3.65 0.00 37.44 1.63
2107 2181 3.492337 TGTCCAGTTTGTTTGATACCCC 58.508 45.455 0.00 0.00 0.00 4.95
2172 2246 5.814705 TCAACCATTTGAATGTTTGACCAAC 59.185 36.000 11.22 0.00 41.11 3.77
2173 2247 5.583854 CAACCATTTGAATGTTTGACCAACA 59.416 36.000 7.90 0.00 40.09 3.33
2174 2248 6.093219 CAACCATTTGAATGTTTGACCAACAA 59.907 34.615 7.90 0.00 40.09 2.83
2175 2249 7.886496 CAACCATTTGAATGTTTGACCAACAAC 60.886 37.037 7.90 0.00 40.09 3.32
2182 2256 4.322080 TGTTTGACCAACAACAACAACA 57.678 36.364 0.00 0.00 42.76 3.33
2183 2257 4.693283 TGTTTGACCAACAACAACAACAA 58.307 34.783 0.00 0.00 42.76 2.83
2184 2258 4.508124 TGTTTGACCAACAACAACAACAAC 59.492 37.500 0.00 0.00 42.76 3.32
2185 2259 4.322080 TTGACCAACAACAACAACAACA 57.678 36.364 0.00 0.00 33.18 3.33
2186 2260 4.322080 TGACCAACAACAACAACAACAA 57.678 36.364 0.00 0.00 0.00 2.83
2187 2261 4.051922 TGACCAACAACAACAACAACAAC 58.948 39.130 0.00 0.00 0.00 3.32
2188 2262 4.051922 GACCAACAACAACAACAACAACA 58.948 39.130 0.00 0.00 0.00 3.33
2189 2263 4.442706 ACCAACAACAACAACAACAACAA 58.557 34.783 0.00 0.00 0.00 2.83
2190 2264 4.271291 ACCAACAACAACAACAACAACAAC 59.729 37.500 0.00 0.00 0.00 3.32
2191 2265 4.271049 CCAACAACAACAACAACAACAACA 59.729 37.500 0.00 0.00 0.00 3.33
2192 2266 5.220662 CCAACAACAACAACAACAACAACAA 60.221 36.000 0.00 0.00 0.00 2.83
2193 2267 6.250819 CAACAACAACAACAACAACAACAAA 58.749 32.000 0.00 0.00 0.00 2.83
2194 2268 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
2195 2269 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
2196 2270 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
2197 2271 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
2198 2272 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
2199 2273 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
2200 2274 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
2201 2275 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
2202 2276 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
2203 2277 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
2204 2278 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
2205 2279 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
2206 2280 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
2207 2281 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
2208 2282 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
2209 2283 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
2210 2284 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
2211 2285 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
2212 2286 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
2213 2287 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
2214 2288 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
2215 2289 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
2224 2298 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2225 2299 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2226 2300 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2227 2301 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2228 2302 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
2229 2303 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
2230 2304 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
2231 2305 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
2232 2306 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
2233 2307 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
2234 2308 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
2235 2309 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
2250 2324 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
2251 2325 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
2252 2326 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
2253 2327 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
2254 2328 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
2255 2329 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
2256 2330 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
2257 2331 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
2258 2332 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
2259 2333 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
2260 2334 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
2261 2335 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
2269 2343 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
2270 2344 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
2271 2345 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
2272 2346 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
2273 2347 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
2274 2348 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
2275 2349 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
2276 2350 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
2277 2351 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
2278 2352 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
2279 2353 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
2280 2354 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
2281 2355 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
2282 2356 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
2283 2357 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
2284 2358 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
2285 2359 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
2286 2360 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
2287 2361 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
2288 2362 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
2289 2363 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
2290 2364 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
2291 2365 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
2292 2366 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
2293 2367 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
2294 2368 1.303309 GATAGCAAGCTTCCACGCAT 58.697 50.000 8.96 1.45 0.00 4.73
2295 2369 1.262683 GATAGCAAGCTTCCACGCATC 59.737 52.381 8.96 6.32 0.00 3.91
2296 2370 0.744414 TAGCAAGCTTCCACGCATCC 60.744 55.000 8.96 0.00 0.00 3.51
2297 2371 3.056313 GCAAGCTTCCACGCATCCC 62.056 63.158 0.00 0.00 0.00 3.85
2298 2372 1.377725 CAAGCTTCCACGCATCCCT 60.378 57.895 0.00 0.00 0.00 4.20
2299 2373 1.377725 AAGCTTCCACGCATCCCTG 60.378 57.895 0.00 0.00 0.00 4.45
2300 2374 2.045926 GCTTCCACGCATCCCTGT 60.046 61.111 0.00 0.00 0.00 4.00
2301 2375 2.109126 GCTTCCACGCATCCCTGTC 61.109 63.158 0.00 0.00 0.00 3.51
2302 2376 1.450312 CTTCCACGCATCCCTGTCC 60.450 63.158 0.00 0.00 0.00 4.02
2303 2377 2.184020 CTTCCACGCATCCCTGTCCA 62.184 60.000 0.00 0.00 0.00 4.02
2304 2378 1.561769 TTCCACGCATCCCTGTCCAT 61.562 55.000 0.00 0.00 0.00 3.41
2305 2379 0.689412 TCCACGCATCCCTGTCCATA 60.689 55.000 0.00 0.00 0.00 2.74
2306 2380 0.250038 CCACGCATCCCTGTCCATAG 60.250 60.000 0.00 0.00 0.00 2.23
2307 2381 0.882042 CACGCATCCCTGTCCATAGC 60.882 60.000 0.00 0.00 0.00 2.97
2308 2382 1.050988 ACGCATCCCTGTCCATAGCT 61.051 55.000 0.00 0.00 0.00 3.32
2309 2383 0.969149 CGCATCCCTGTCCATAGCTA 59.031 55.000 0.00 0.00 0.00 3.32
2310 2384 1.067283 CGCATCCCTGTCCATAGCTAG 60.067 57.143 0.00 0.00 0.00 3.42
2311 2385 1.338579 GCATCCCTGTCCATAGCTAGC 60.339 57.143 6.62 6.62 0.00 3.42
2312 2386 2.255406 CATCCCTGTCCATAGCTAGCT 58.745 52.381 23.12 23.12 0.00 3.32
2313 2387 2.002505 TCCCTGTCCATAGCTAGCTC 57.997 55.000 23.26 7.00 0.00 4.09
2314 2388 1.501170 TCCCTGTCCATAGCTAGCTCT 59.499 52.381 23.26 9.05 0.00 4.09
2315 2389 2.091055 TCCCTGTCCATAGCTAGCTCTT 60.091 50.000 23.26 7.47 0.00 2.85
2316 2390 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
2317 2391 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
2318 2392 3.494048 CCTGTCCATAGCTAGCTCTTTGG 60.494 52.174 23.26 24.37 36.78 3.28
2319 2393 3.107601 TGTCCATAGCTAGCTCTTTGGT 58.892 45.455 27.50 8.05 36.79 3.67
2320 2394 3.118629 TGTCCATAGCTAGCTCTTTGGTG 60.119 47.826 27.50 16.61 36.79 4.17
2321 2395 3.133003 GTCCATAGCTAGCTCTTTGGTGA 59.867 47.826 27.50 15.24 36.79 4.02
2322 2396 3.969976 TCCATAGCTAGCTCTTTGGTGAT 59.030 43.478 27.50 12.14 36.79 3.06
2323 2397 5.011125 GTCCATAGCTAGCTCTTTGGTGATA 59.989 44.000 27.50 14.48 36.79 2.15
2324 2398 5.011125 TCCATAGCTAGCTCTTTGGTGATAC 59.989 44.000 27.50 0.00 36.79 2.24
2325 2399 5.011533 CCATAGCTAGCTCTTTGGTGATACT 59.988 44.000 23.26 0.00 32.65 2.12
2326 2400 4.664150 AGCTAGCTCTTTGGTGATACTC 57.336 45.455 12.68 0.00 0.00 2.59
2327 2401 3.386402 AGCTAGCTCTTTGGTGATACTCC 59.614 47.826 12.68 0.00 0.00 3.85
2328 2402 3.133003 GCTAGCTCTTTGGTGATACTCCA 59.867 47.826 7.70 0.00 0.00 3.86
2329 2403 4.383118 GCTAGCTCTTTGGTGATACTCCAA 60.383 45.833 7.70 0.00 42.29 3.53
2330 2404 4.851639 AGCTCTTTGGTGATACTCCAAT 57.148 40.909 6.20 0.00 43.25 3.16
2331 2405 4.775236 AGCTCTTTGGTGATACTCCAATC 58.225 43.478 6.20 0.00 43.25 2.67
2332 2406 3.879892 GCTCTTTGGTGATACTCCAATCC 59.120 47.826 6.20 0.00 43.25 3.01
2333 2407 4.384647 GCTCTTTGGTGATACTCCAATCCT 60.385 45.833 6.20 0.00 43.25 3.24
2334 2408 5.749462 CTCTTTGGTGATACTCCAATCCTT 58.251 41.667 6.20 0.00 43.25 3.36
2335 2409 5.745227 TCTTTGGTGATACTCCAATCCTTC 58.255 41.667 6.20 0.00 43.25 3.46
2336 2410 5.250543 TCTTTGGTGATACTCCAATCCTTCA 59.749 40.000 6.20 0.00 43.25 3.02
2337 2411 4.760530 TGGTGATACTCCAATCCTTCAG 57.239 45.455 0.00 0.00 31.50 3.02
2338 2412 3.455910 TGGTGATACTCCAATCCTTCAGG 59.544 47.826 0.00 0.00 31.50 3.86
2339 2413 3.456277 GGTGATACTCCAATCCTTCAGGT 59.544 47.826 0.00 0.00 36.34 4.00
2340 2414 4.443598 GGTGATACTCCAATCCTTCAGGTC 60.444 50.000 0.00 0.00 36.34 3.85
2341 2415 4.407296 GTGATACTCCAATCCTTCAGGTCT 59.593 45.833 0.00 0.00 36.34 3.85
2342 2416 4.651503 TGATACTCCAATCCTTCAGGTCTC 59.348 45.833 0.00 0.00 36.34 3.36
2343 2417 3.197927 ACTCCAATCCTTCAGGTCTCT 57.802 47.619 0.00 0.00 36.34 3.10
2344 2418 3.103742 ACTCCAATCCTTCAGGTCTCTC 58.896 50.000 0.00 0.00 36.34 3.20
2345 2419 3.245948 ACTCCAATCCTTCAGGTCTCTCT 60.246 47.826 0.00 0.00 36.34 3.10
2346 2420 3.774216 CTCCAATCCTTCAGGTCTCTCTT 59.226 47.826 0.00 0.00 36.34 2.85
2347 2421 4.947883 TCCAATCCTTCAGGTCTCTCTTA 58.052 43.478 0.00 0.00 36.34 2.10
2348 2422 5.342017 TCCAATCCTTCAGGTCTCTCTTAA 58.658 41.667 0.00 0.00 36.34 1.85
2349 2423 5.187967 TCCAATCCTTCAGGTCTCTCTTAAC 59.812 44.000 0.00 0.00 36.34 2.01
2350 2424 4.993029 ATCCTTCAGGTCTCTCTTAACG 57.007 45.455 0.00 0.00 36.34 3.18
2351 2425 3.090037 TCCTTCAGGTCTCTCTTAACGG 58.910 50.000 0.00 0.00 36.34 4.44
2352 2426 3.090037 CCTTCAGGTCTCTCTTAACGGA 58.910 50.000 0.00 0.00 0.00 4.69
2353 2427 3.119424 CCTTCAGGTCTCTCTTAACGGAC 60.119 52.174 0.00 0.00 0.00 4.79
2354 2428 3.436577 TCAGGTCTCTCTTAACGGACT 57.563 47.619 0.00 0.00 0.00 3.85
2355 2429 3.345414 TCAGGTCTCTCTTAACGGACTC 58.655 50.000 0.00 0.00 0.00 3.36
2356 2430 2.424246 CAGGTCTCTCTTAACGGACTCC 59.576 54.545 0.00 0.00 0.00 3.85
2357 2431 2.309458 AGGTCTCTCTTAACGGACTCCT 59.691 50.000 0.00 0.00 0.00 3.69
2358 2432 2.684374 GGTCTCTCTTAACGGACTCCTC 59.316 54.545 0.00 0.00 0.00 3.71
2359 2433 2.684374 GTCTCTCTTAACGGACTCCTCC 59.316 54.545 0.00 0.00 0.00 4.30
2360 2434 2.025898 CTCTCTTAACGGACTCCTCCC 58.974 57.143 0.00 0.00 31.93 4.30
2361 2435 1.356738 TCTCTTAACGGACTCCTCCCA 59.643 52.381 0.00 0.00 31.93 4.37
2362 2436 2.024273 TCTCTTAACGGACTCCTCCCAT 60.024 50.000 0.00 0.00 31.93 4.00
2363 2437 2.101582 CTCTTAACGGACTCCTCCCATG 59.898 54.545 0.00 0.00 31.93 3.66
2364 2438 1.831736 CTTAACGGACTCCTCCCATGT 59.168 52.381 0.00 0.00 31.93 3.21
2365 2439 1.481871 TAACGGACTCCTCCCATGTC 58.518 55.000 0.00 0.00 31.93 3.06
2366 2440 0.544357 AACGGACTCCTCCCATGTCA 60.544 55.000 0.00 0.00 31.93 3.58
2367 2441 0.544357 ACGGACTCCTCCCATGTCAA 60.544 55.000 0.00 0.00 31.93 3.18
2368 2442 0.613260 CGGACTCCTCCCATGTCAAA 59.387 55.000 0.00 0.00 31.93 2.69
2369 2443 1.210478 CGGACTCCTCCCATGTCAAAT 59.790 52.381 0.00 0.00 31.93 2.32
2370 2444 2.356125 CGGACTCCTCCCATGTCAAATT 60.356 50.000 0.00 0.00 31.93 1.82
2371 2445 3.282885 GGACTCCTCCCATGTCAAATTC 58.717 50.000 0.00 0.00 32.84 2.17
2372 2446 2.939103 GACTCCTCCCATGTCAAATTCG 59.061 50.000 0.00 0.00 0.00 3.34
2373 2447 2.292267 CTCCTCCCATGTCAAATTCGG 58.708 52.381 0.00 0.00 0.00 4.30
2374 2448 1.633432 TCCTCCCATGTCAAATTCGGT 59.367 47.619 0.00 0.00 0.00 4.69
2375 2449 2.017049 CCTCCCATGTCAAATTCGGTC 58.983 52.381 0.00 0.00 0.00 4.79
2376 2450 2.356125 CCTCCCATGTCAAATTCGGTCT 60.356 50.000 0.00 0.00 0.00 3.85
2377 2451 3.118408 CCTCCCATGTCAAATTCGGTCTA 60.118 47.826 0.00 0.00 0.00 2.59
2378 2452 3.869065 TCCCATGTCAAATTCGGTCTAC 58.131 45.455 0.00 0.00 0.00 2.59
2379 2453 2.943033 CCCATGTCAAATTCGGTCTACC 59.057 50.000 0.00 0.00 0.00 3.18
2380 2454 2.943033 CCATGTCAAATTCGGTCTACCC 59.057 50.000 0.00 0.00 0.00 3.69
2381 2455 2.773993 TGTCAAATTCGGTCTACCCC 57.226 50.000 0.00 0.00 0.00 4.95
2388 2462 4.835891 CGGTCTACCCCGCCCTCT 62.836 72.222 0.00 0.00 41.78 3.69
2389 2463 2.838693 GGTCTACCCCGCCCTCTC 60.839 72.222 0.00 0.00 0.00 3.20
2390 2464 2.279408 GTCTACCCCGCCCTCTCT 59.721 66.667 0.00 0.00 0.00 3.10
2391 2465 1.381463 GTCTACCCCGCCCTCTCTT 60.381 63.158 0.00 0.00 0.00 2.85
2392 2466 1.381327 TCTACCCCGCCCTCTCTTG 60.381 63.158 0.00 0.00 0.00 3.02
2393 2467 1.381327 CTACCCCGCCCTCTCTTGA 60.381 63.158 0.00 0.00 0.00 3.02
2394 2468 1.677637 CTACCCCGCCCTCTCTTGAC 61.678 65.000 0.00 0.00 0.00 3.18
2395 2469 2.449967 TACCCCGCCCTCTCTTGACA 62.450 60.000 0.00 0.00 0.00 3.58
2396 2470 2.370445 CCCCGCCCTCTCTTGACAT 61.370 63.158 0.00 0.00 0.00 3.06
2397 2471 1.604378 CCCGCCCTCTCTTGACATT 59.396 57.895 0.00 0.00 0.00 2.71
2398 2472 0.462759 CCCGCCCTCTCTTGACATTC 60.463 60.000 0.00 0.00 0.00 2.67
2399 2473 0.539051 CCGCCCTCTCTTGACATTCT 59.461 55.000 0.00 0.00 0.00 2.40
2400 2474 1.472376 CCGCCCTCTCTTGACATTCTC 60.472 57.143 0.00 0.00 0.00 2.87
2401 2475 1.472376 CGCCCTCTCTTGACATTCTCC 60.472 57.143 0.00 0.00 0.00 3.71
2402 2476 1.472376 GCCCTCTCTTGACATTCTCCG 60.472 57.143 0.00 0.00 0.00 4.63
2403 2477 1.472376 CCCTCTCTTGACATTCTCCGC 60.472 57.143 0.00 0.00 0.00 5.54
2404 2478 1.205655 CCTCTCTTGACATTCTCCGCA 59.794 52.381 0.00 0.00 0.00 5.69
2405 2479 2.266554 CTCTCTTGACATTCTCCGCAC 58.733 52.381 0.00 0.00 0.00 5.34
2406 2480 0.994995 CTCTTGACATTCTCCGCACG 59.005 55.000 0.00 0.00 0.00 5.34
2407 2481 1.014044 TCTTGACATTCTCCGCACGC 61.014 55.000 0.00 0.00 0.00 5.34
2408 2482 1.005037 TTGACATTCTCCGCACGCT 60.005 52.632 0.00 0.00 0.00 5.07
2409 2483 0.602638 TTGACATTCTCCGCACGCTT 60.603 50.000 0.00 0.00 0.00 4.68
2410 2484 0.602638 TGACATTCTCCGCACGCTTT 60.603 50.000 0.00 0.00 0.00 3.51
2411 2485 1.337354 TGACATTCTCCGCACGCTTTA 60.337 47.619 0.00 0.00 0.00 1.85
2412 2486 1.324736 GACATTCTCCGCACGCTTTAG 59.675 52.381 0.00 0.00 0.00 1.85
2413 2487 0.026803 CATTCTCCGCACGCTTTAGC 59.973 55.000 0.00 0.00 37.78 3.09
2414 2488 1.090052 ATTCTCCGCACGCTTTAGCC 61.090 55.000 0.00 0.00 37.91 3.93
2415 2489 3.554692 CTCCGCACGCTTTAGCCG 61.555 66.667 0.00 0.00 37.91 5.52
2416 2490 4.367023 TCCGCACGCTTTAGCCGT 62.367 61.111 0.00 0.00 37.91 5.68
2417 2491 3.849953 CCGCACGCTTTAGCCGTC 61.850 66.667 0.00 0.00 37.91 4.79
2418 2492 3.849953 CGCACGCTTTAGCCGTCC 61.850 66.667 0.00 0.00 37.91 4.79
2419 2493 2.740826 GCACGCTTTAGCCGTCCA 60.741 61.111 0.00 0.00 37.91 4.02
2420 2494 3.023591 GCACGCTTTAGCCGTCCAC 62.024 63.158 0.00 0.00 37.91 4.02
2421 2495 1.374252 CACGCTTTAGCCGTCCACT 60.374 57.895 0.00 0.00 37.91 4.00
2422 2496 0.108992 CACGCTTTAGCCGTCCACTA 60.109 55.000 0.00 0.00 37.91 2.74
2423 2497 0.822164 ACGCTTTAGCCGTCCACTAT 59.178 50.000 0.00 0.00 37.91 2.12
2424 2498 1.209128 CGCTTTAGCCGTCCACTATG 58.791 55.000 0.00 0.00 37.91 2.23
2425 2499 0.938008 GCTTTAGCCGTCCACTATGC 59.062 55.000 0.00 0.00 34.31 3.14
2426 2500 1.742411 GCTTTAGCCGTCCACTATGCA 60.742 52.381 0.00 0.00 34.31 3.96
2427 2501 1.933853 CTTTAGCCGTCCACTATGCAC 59.066 52.381 0.00 0.00 0.00 4.57
2428 2502 0.177141 TTAGCCGTCCACTATGCACC 59.823 55.000 0.00 0.00 0.00 5.01
2429 2503 2.011741 TAGCCGTCCACTATGCACCG 62.012 60.000 0.00 0.00 0.00 4.94
2430 2504 2.202878 CCGTCCACTATGCACCGG 60.203 66.667 0.00 0.00 0.00 5.28
2431 2505 2.717044 CCGTCCACTATGCACCGGA 61.717 63.158 9.46 0.00 37.66 5.14
2432 2506 1.226974 CGTCCACTATGCACCGGAG 60.227 63.158 9.46 0.00 0.00 4.63
2433 2507 1.521681 GTCCACTATGCACCGGAGC 60.522 63.158 17.78 17.78 0.00 4.70
2434 2508 1.685765 TCCACTATGCACCGGAGCT 60.686 57.895 24.52 12.48 34.99 4.09
2435 2509 1.221840 CCACTATGCACCGGAGCTT 59.778 57.895 24.52 20.12 34.99 3.74
2436 2510 0.811616 CCACTATGCACCGGAGCTTC 60.812 60.000 24.52 0.00 34.99 3.86
2437 2511 0.176680 CACTATGCACCGGAGCTTCT 59.823 55.000 24.52 11.69 34.99 2.85
2438 2512 0.176680 ACTATGCACCGGAGCTTCTG 59.823 55.000 24.52 15.84 34.99 3.02
2440 2514 0.975556 TATGCACCGGAGCTTCTGGA 60.976 55.000 24.52 4.67 45.95 3.86
2441 2515 2.125350 GCACCGGAGCTTCTGGAG 60.125 66.667 17.33 9.97 45.95 3.86
2442 2516 2.581354 CACCGGAGCTTCTGGAGG 59.419 66.667 9.46 0.49 45.95 4.30
2443 2517 3.394836 ACCGGAGCTTCTGGAGGC 61.395 66.667 9.46 0.00 45.95 4.70
2444 2518 4.168291 CCGGAGCTTCTGGAGGCC 62.168 72.222 0.00 0.00 45.95 5.19
2445 2519 3.080121 CGGAGCTTCTGGAGGCCT 61.080 66.667 3.86 3.86 33.44 5.19
2446 2520 2.588989 GGAGCTTCTGGAGGCCTG 59.411 66.667 12.00 0.00 33.44 4.85
2447 2521 2.124778 GAGCTTCTGGAGGCCTGC 60.125 66.667 18.95 18.95 33.44 4.85
2448 2522 4.093291 AGCTTCTGGAGGCCTGCG 62.093 66.667 20.39 14.23 33.44 5.18
2450 2524 4.093291 CTTCTGGAGGCCTGCGCT 62.093 66.667 20.39 0.00 34.44 5.92
2451 2525 4.399395 TTCTGGAGGCCTGCGCTG 62.399 66.667 20.39 12.20 34.44 5.18
2453 2527 4.399395 CTGGAGGCCTGCGCTGAA 62.399 66.667 20.39 0.00 34.44 3.02
2454 2528 3.694058 CTGGAGGCCTGCGCTGAAT 62.694 63.158 20.39 0.55 34.44 2.57
2455 2529 2.315781 CTGGAGGCCTGCGCTGAATA 62.316 60.000 20.39 0.00 34.44 1.75
2456 2530 1.072159 GGAGGCCTGCGCTGAATAT 59.928 57.895 12.00 0.00 34.44 1.28
2457 2531 1.233285 GGAGGCCTGCGCTGAATATG 61.233 60.000 12.00 0.00 34.44 1.78
2458 2532 1.849976 GAGGCCTGCGCTGAATATGC 61.850 60.000 12.00 9.73 34.44 3.14
2459 2533 2.641559 GCCTGCGCTGAATATGCC 59.358 61.111 16.65 0.00 0.00 4.40
2460 2534 2.912624 GCCTGCGCTGAATATGCCC 61.913 63.158 16.65 0.00 0.00 5.36
2461 2535 1.526686 CCTGCGCTGAATATGCCCA 60.527 57.895 16.65 0.00 0.00 5.36
2462 2536 1.102809 CCTGCGCTGAATATGCCCAA 61.103 55.000 16.65 0.00 0.00 4.12
2463 2537 0.740149 CTGCGCTGAATATGCCCAAA 59.260 50.000 9.73 0.00 0.00 3.28
2464 2538 0.455410 TGCGCTGAATATGCCCAAAC 59.545 50.000 9.73 0.00 0.00 2.93
2465 2539 0.249031 GCGCTGAATATGCCCAAACC 60.249 55.000 0.00 0.00 0.00 3.27
2466 2540 1.102154 CGCTGAATATGCCCAAACCA 58.898 50.000 0.00 0.00 0.00 3.67
2467 2541 1.682854 CGCTGAATATGCCCAAACCAT 59.317 47.619 0.00 0.00 0.00 3.55
2468 2542 2.287788 CGCTGAATATGCCCAAACCATC 60.288 50.000 0.00 0.00 0.00 3.51
2469 2543 2.961062 GCTGAATATGCCCAAACCATCT 59.039 45.455 0.00 0.00 0.00 2.90
2470 2544 3.005155 GCTGAATATGCCCAAACCATCTC 59.995 47.826 0.00 0.00 0.00 2.75
2471 2545 4.209538 CTGAATATGCCCAAACCATCTCA 58.790 43.478 0.00 0.00 0.00 3.27
2472 2546 4.209538 TGAATATGCCCAAACCATCTCAG 58.790 43.478 0.00 0.00 0.00 3.35
2473 2547 4.079844 TGAATATGCCCAAACCATCTCAGA 60.080 41.667 0.00 0.00 0.00 3.27
2474 2548 2.134789 ATGCCCAAACCATCTCAGAC 57.865 50.000 0.00 0.00 0.00 3.51
2475 2549 0.321564 TGCCCAAACCATCTCAGACG 60.322 55.000 0.00 0.00 0.00 4.18
2476 2550 0.036388 GCCCAAACCATCTCAGACGA 60.036 55.000 0.00 0.00 0.00 4.20
2477 2551 1.407437 GCCCAAACCATCTCAGACGAT 60.407 52.381 0.00 0.00 0.00 3.73
2478 2552 2.283298 CCCAAACCATCTCAGACGATG 58.717 52.381 0.00 0.00 40.32 3.84
2479 2553 2.355108 CCCAAACCATCTCAGACGATGT 60.355 50.000 0.00 0.00 39.26 3.06
2480 2554 3.338249 CCAAACCATCTCAGACGATGTT 58.662 45.455 0.00 0.00 39.26 2.71
2481 2555 3.125829 CCAAACCATCTCAGACGATGTTG 59.874 47.826 0.00 7.25 39.26 3.33
2482 2556 2.680312 ACCATCTCAGACGATGTTGG 57.320 50.000 0.00 0.39 39.26 3.77
2483 2557 2.179427 ACCATCTCAGACGATGTTGGA 58.821 47.619 0.00 0.00 39.26 3.53
2484 2558 2.093973 ACCATCTCAGACGATGTTGGAC 60.094 50.000 0.00 0.00 39.26 4.02
2485 2559 2.094026 CCATCTCAGACGATGTTGGACA 60.094 50.000 0.00 0.00 39.26 4.02
2486 2560 3.588955 CATCTCAGACGATGTTGGACAA 58.411 45.455 0.00 0.00 36.80 3.18
2487 2561 3.303881 TCTCAGACGATGTTGGACAAG 57.696 47.619 0.00 0.00 0.00 3.16
2488 2562 1.728971 CTCAGACGATGTTGGACAAGC 59.271 52.381 0.00 0.00 0.00 4.01
2489 2563 1.344438 TCAGACGATGTTGGACAAGCT 59.656 47.619 0.00 0.00 0.00 3.74
2490 2564 2.146342 CAGACGATGTTGGACAAGCTT 58.854 47.619 0.00 0.00 0.00 3.74
2491 2565 2.158449 CAGACGATGTTGGACAAGCTTC 59.842 50.000 0.00 0.00 0.00 3.86
2492 2566 2.037772 AGACGATGTTGGACAAGCTTCT 59.962 45.455 0.00 0.00 0.00 2.85
2493 2567 2.413453 GACGATGTTGGACAAGCTTCTC 59.587 50.000 0.00 0.00 0.00 2.87
2494 2568 2.037772 ACGATGTTGGACAAGCTTCTCT 59.962 45.455 0.00 0.00 0.00 3.10
2495 2569 3.070018 CGATGTTGGACAAGCTTCTCTT 58.930 45.455 0.00 0.00 34.78 2.85
2496 2570 3.124297 CGATGTTGGACAAGCTTCTCTTC 59.876 47.826 0.00 0.00 31.27 2.87
2497 2571 3.558931 TGTTGGACAAGCTTCTCTTCA 57.441 42.857 0.00 0.00 31.27 3.02
2498 2572 3.884895 TGTTGGACAAGCTTCTCTTCAA 58.115 40.909 0.00 0.00 31.27 2.69
2499 2573 4.464008 TGTTGGACAAGCTTCTCTTCAAT 58.536 39.130 0.00 0.00 31.27 2.57
2500 2574 4.889409 TGTTGGACAAGCTTCTCTTCAATT 59.111 37.500 0.00 0.00 31.27 2.32
2501 2575 5.218139 GTTGGACAAGCTTCTCTTCAATTG 58.782 41.667 0.00 0.00 31.27 2.32
2502 2576 3.822735 TGGACAAGCTTCTCTTCAATTGG 59.177 43.478 5.42 0.00 31.27 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 1.092348 GTTTAAAGGCGAAGGGCGAT 58.908 50.000 0.00 0.00 44.92 4.58
55 57 2.742589 GGAAGAGGTGAGTTTAAAGGCG 59.257 50.000 0.00 0.00 0.00 5.52
62 64 1.270893 GGCGAAGGAAGAGGTGAGTTT 60.271 52.381 0.00 0.00 0.00 2.66
63 65 0.321996 GGCGAAGGAAGAGGTGAGTT 59.678 55.000 0.00 0.00 0.00 3.01
65 67 1.153745 CGGCGAAGGAAGAGGTGAG 60.154 63.158 0.00 0.00 0.00 3.51
89 91 1.305886 GGAAGGGGGAAACTGGGTAT 58.694 55.000 0.00 0.00 0.00 2.73
146 148 2.106683 GCCGCGCTGTAACTGGAAT 61.107 57.895 5.56 0.00 0.00 3.01
151 153 2.202570 CGTAGCCGCGCTGTAACT 60.203 61.111 5.56 0.00 40.10 2.24
189 191 4.131088 GGCTGGGGACTCGACGAC 62.131 72.222 0.00 0.00 0.00 4.34
195 197 4.459089 GAGTGCGGCTGGGGACTC 62.459 72.222 0.00 1.33 45.87 3.36
416 428 1.620822 AGGGAGTTCGCAAGCAATTT 58.379 45.000 0.00 0.00 37.18 1.82
476 520 1.165270 GTTTTGCGTGGGCTAGACAT 58.835 50.000 0.00 0.00 40.82 3.06
662 706 3.382832 AGTCGTGGAGGCGGAAGG 61.383 66.667 0.00 0.00 0.00 3.46
663 707 2.125912 CAGTCGTGGAGGCGGAAG 60.126 66.667 0.00 0.00 0.00 3.46
693 744 2.220786 CTGGGGCTTGGGCAGAATCT 62.221 60.000 0.00 0.00 40.87 2.40
754 805 3.999663 GGGCAAGTGATAGTGATATCTGC 59.000 47.826 3.98 1.97 0.00 4.26
767 818 3.160585 CCACAGAGGGGCAAGTGA 58.839 61.111 0.00 0.00 33.99 3.41
843 895 6.895756 TGTAACAGTACCTCTACCAATGATCT 59.104 38.462 0.00 0.00 0.00 2.75
849 901 4.154176 TGCTGTAACAGTACCTCTACCAA 58.846 43.478 0.00 0.00 33.43 3.67
953 1008 6.384258 TCTGATCCTCGAAGTAGATTCTTG 57.616 41.667 0.00 0.00 35.61 3.02
1024 1080 0.552848 AGATGGGGATGCATTTCCGT 59.447 50.000 0.00 7.17 36.58 4.69
1025 1081 2.554032 GTTAGATGGGGATGCATTTCCG 59.446 50.000 0.00 0.00 36.58 4.30
1119 1175 8.237267 GGAACTTCTGTGAAAATATACACTTGG 58.763 37.037 0.00 0.00 37.81 3.61
1719 1791 9.905713 AACTTGGAGCAAGATTTATTGTCTATA 57.094 29.630 0.00 0.00 43.42 1.31
1720 1792 8.680903 CAACTTGGAGCAAGATTTATTGTCTAT 58.319 33.333 0.00 0.00 43.42 1.98
1740 1812 7.309920 AGTTTTTACAGTACAACACCAACTTG 58.690 34.615 0.00 0.00 0.00 3.16
1791 1863 9.604626 GTGAAGATTTCATACAGAAGTTTCAAG 57.395 33.333 0.00 0.00 42.47 3.02
1832 1905 6.719370 AGAAAACATACTGGATTTACTTGCCA 59.281 34.615 0.00 0.00 0.00 4.92
1978 2051 7.448469 TCTCGATATTTCATATGGACTCTGACA 59.552 37.037 2.13 0.00 0.00 3.58
2107 2181 5.671493 ACACCTTATATTCTTGAACGGAGG 58.329 41.667 0.00 0.00 0.00 4.30
2172 2246 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
2173 2247 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
2174 2248 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
2175 2249 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
2176 2250 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
2177 2251 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
2178 2252 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
2179 2253 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
2180 2254 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
2181 2255 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
2182 2256 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
2183 2257 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
2184 2258 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
2185 2259 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
2186 2260 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
2187 2261 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
2188 2262 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
2189 2263 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
2190 2264 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
2191 2265 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
2192 2266 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
2193 2267 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
2194 2268 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
2205 2279 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2206 2280 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2207 2281 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
2208 2282 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
2209 2283 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
2210 2284 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
2211 2285 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
2212 2286 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
2213 2287 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
2214 2288 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
2215 2289 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
2216 2290 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
2217 2291 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
2218 2292 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
2219 2293 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
2220 2294 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
2221 2295 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
2222 2296 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
2223 2297 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
2224 2298 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
2225 2299 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
2226 2300 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
2227 2301 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
2228 2302 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
2229 2303 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
2230 2304 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
2231 2305 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
2232 2306 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
2233 2307 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
2234 2308 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
2235 2309 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
2236 2310 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
2237 2311 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
2238 2312 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
2239 2313 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
2240 2314 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
2241 2315 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
2242 2316 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
2243 2317 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
2244 2318 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
2253 2327 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
2254 2328 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
2255 2329 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
2256 2330 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
2257 2331 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
2258 2332 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
2259 2333 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
2260 2334 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
2261 2335 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
2262 2336 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
2263 2337 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
2264 2338 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
2265 2339 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
2266 2340 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
2267 2341 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
2268 2342 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
2269 2343 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
2270 2344 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
2271 2345 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
2272 2346 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
2273 2347 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
2274 2348 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
2275 2349 1.262683 GATGCGTGGAAGCTTGCTATC 59.737 52.381 19.34 12.79 38.13 2.08
2276 2350 1.303309 GATGCGTGGAAGCTTGCTAT 58.697 50.000 19.34 8.18 38.13 2.97
2277 2351 0.744414 GGATGCGTGGAAGCTTGCTA 60.744 55.000 19.34 2.82 38.13 3.49
2278 2352 2.042831 GGATGCGTGGAAGCTTGCT 61.043 57.895 19.34 0.00 38.13 3.91
2279 2353 2.486966 GGATGCGTGGAAGCTTGC 59.513 61.111 11.58 11.58 38.13 4.01
2280 2354 1.377725 AGGGATGCGTGGAAGCTTG 60.378 57.895 2.10 0.00 38.13 4.01
2281 2355 1.377725 CAGGGATGCGTGGAAGCTT 60.378 57.895 0.00 0.00 38.13 3.74
2282 2356 2.270205 CAGGGATGCGTGGAAGCT 59.730 61.111 0.00 0.00 38.13 3.74
2283 2357 2.045926 ACAGGGATGCGTGGAAGC 60.046 61.111 11.72 0.00 37.71 3.86
2284 2358 1.450312 GGACAGGGATGCGTGGAAG 60.450 63.158 11.72 0.00 0.00 3.46
2285 2359 1.561769 ATGGACAGGGATGCGTGGAA 61.562 55.000 11.72 0.00 0.00 3.53
2286 2360 0.689412 TATGGACAGGGATGCGTGGA 60.689 55.000 11.72 0.00 0.00 4.02
2287 2361 0.250038 CTATGGACAGGGATGCGTGG 60.250 60.000 11.72 0.00 0.00 4.94
2288 2362 0.882042 GCTATGGACAGGGATGCGTG 60.882 60.000 5.28 5.28 0.00 5.34
2289 2363 1.050988 AGCTATGGACAGGGATGCGT 61.051 55.000 0.00 0.00 0.00 5.24
2290 2364 0.969149 TAGCTATGGACAGGGATGCG 59.031 55.000 0.00 0.00 0.00 4.73
2291 2365 1.338579 GCTAGCTATGGACAGGGATGC 60.339 57.143 7.70 0.00 0.00 3.91
2292 2366 2.233431 GAGCTAGCTATGGACAGGGATG 59.767 54.545 19.38 0.00 0.00 3.51
2293 2367 2.111613 AGAGCTAGCTATGGACAGGGAT 59.888 50.000 19.38 0.00 0.00 3.85
2294 2368 1.501170 AGAGCTAGCTATGGACAGGGA 59.499 52.381 19.38 0.00 0.00 4.20
2295 2369 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
2296 2370 3.494048 CCAAAGAGCTAGCTATGGACAGG 60.494 52.174 27.69 15.84 30.53 4.00
2297 2371 3.133721 ACCAAAGAGCTAGCTATGGACAG 59.866 47.826 33.71 17.94 32.26 3.51
2298 2372 3.107601 ACCAAAGAGCTAGCTATGGACA 58.892 45.455 33.71 0.00 32.26 4.02
2299 2373 3.133003 TCACCAAAGAGCTAGCTATGGAC 59.867 47.826 33.71 18.05 32.26 4.02
2300 2374 3.374764 TCACCAAAGAGCTAGCTATGGA 58.625 45.455 33.71 19.25 32.26 3.41
2301 2375 3.827008 TCACCAAAGAGCTAGCTATGG 57.173 47.619 28.91 28.91 33.36 2.74
2302 2376 6.095432 AGTATCACCAAAGAGCTAGCTATG 57.905 41.667 19.38 16.41 0.00 2.23
2303 2377 5.245075 GGAGTATCACCAAAGAGCTAGCTAT 59.755 44.000 19.38 12.73 36.25 2.97
2304 2378 4.585162 GGAGTATCACCAAAGAGCTAGCTA 59.415 45.833 19.38 0.00 36.25 3.32
2305 2379 3.386402 GGAGTATCACCAAAGAGCTAGCT 59.614 47.826 19.45 19.45 36.25 3.32
2306 2380 3.133003 TGGAGTATCACCAAAGAGCTAGC 59.867 47.826 6.62 6.62 36.25 3.42
2307 2381 5.344743 TTGGAGTATCACCAAAGAGCTAG 57.655 43.478 0.00 0.00 43.22 3.42
2313 2387 9.647145 ACCTGAAGGATTGGAGTATCACCAAAG 62.647 44.444 2.62 0.00 43.17 2.77
2314 2388 7.950045 ACCTGAAGGATTGGAGTATCACCAAA 61.950 42.308 2.62 0.00 43.17 3.28
2315 2389 6.527086 ACCTGAAGGATTGGAGTATCACCAA 61.527 44.000 2.62 0.00 43.61 3.67
2316 2390 3.455910 CCTGAAGGATTGGAGTATCACCA 59.544 47.826 0.00 0.00 34.60 4.17
2317 2391 3.456277 ACCTGAAGGATTGGAGTATCACC 59.544 47.826 2.62 0.00 38.94 4.02
2318 2392 4.407296 AGACCTGAAGGATTGGAGTATCAC 59.593 45.833 2.62 0.00 38.94 3.06
2319 2393 4.624913 AGACCTGAAGGATTGGAGTATCA 58.375 43.478 2.62 0.00 38.94 2.15
2320 2394 4.898861 AGAGACCTGAAGGATTGGAGTATC 59.101 45.833 2.62 0.00 38.94 2.24
2321 2395 4.889780 AGAGACCTGAAGGATTGGAGTAT 58.110 43.478 2.62 0.00 38.94 2.12
2322 2396 4.017037 AGAGAGACCTGAAGGATTGGAGTA 60.017 45.833 2.62 0.00 38.94 2.59
2323 2397 3.103742 GAGAGACCTGAAGGATTGGAGT 58.896 50.000 2.62 0.00 38.94 3.85
2324 2398 3.373830 AGAGAGACCTGAAGGATTGGAG 58.626 50.000 2.62 0.00 38.94 3.86
2325 2399 3.481559 AGAGAGACCTGAAGGATTGGA 57.518 47.619 2.62 0.00 38.94 3.53
2326 2400 5.423886 GTTAAGAGAGACCTGAAGGATTGG 58.576 45.833 2.62 0.00 38.94 3.16
2327 2401 5.105752 CGTTAAGAGAGACCTGAAGGATTG 58.894 45.833 2.62 0.00 38.94 2.67
2328 2402 4.160626 CCGTTAAGAGAGACCTGAAGGATT 59.839 45.833 2.62 0.00 38.94 3.01
2329 2403 3.702045 CCGTTAAGAGAGACCTGAAGGAT 59.298 47.826 2.62 0.00 38.94 3.24
2330 2404 3.090037 CCGTTAAGAGAGACCTGAAGGA 58.910 50.000 2.62 0.00 38.94 3.36
2331 2405 3.090037 TCCGTTAAGAGAGACCTGAAGG 58.910 50.000 0.00 0.00 42.17 3.46
2332 2406 3.759618 AGTCCGTTAAGAGAGACCTGAAG 59.240 47.826 0.00 0.00 0.00 3.02
2333 2407 3.757493 GAGTCCGTTAAGAGAGACCTGAA 59.243 47.826 0.00 0.00 0.00 3.02
2334 2408 3.345414 GAGTCCGTTAAGAGAGACCTGA 58.655 50.000 0.00 0.00 0.00 3.86
2335 2409 2.424246 GGAGTCCGTTAAGAGAGACCTG 59.576 54.545 0.00 0.00 0.00 4.00
2336 2410 2.309458 AGGAGTCCGTTAAGAGAGACCT 59.691 50.000 2.76 0.00 0.00 3.85
2337 2411 2.684374 GAGGAGTCCGTTAAGAGAGACC 59.316 54.545 2.76 0.00 0.00 3.85
2338 2412 2.684374 GGAGGAGTCCGTTAAGAGAGAC 59.316 54.545 2.76 0.00 31.37 3.36
2339 2413 2.356947 GGGAGGAGTCCGTTAAGAGAGA 60.357 54.545 2.76 0.00 45.05 3.10
2340 2414 2.025898 GGGAGGAGTCCGTTAAGAGAG 58.974 57.143 2.76 0.00 45.05 3.20
2341 2415 1.356738 TGGGAGGAGTCCGTTAAGAGA 59.643 52.381 2.76 0.00 45.05 3.10
2342 2416 1.848652 TGGGAGGAGTCCGTTAAGAG 58.151 55.000 2.76 0.00 45.05 2.85
2343 2417 2.108168 CATGGGAGGAGTCCGTTAAGA 58.892 52.381 2.76 0.00 45.05 2.10
2344 2418 1.831736 ACATGGGAGGAGTCCGTTAAG 59.168 52.381 2.76 0.00 45.05 1.85
2345 2419 1.829222 GACATGGGAGGAGTCCGTTAA 59.171 52.381 2.76 0.00 45.05 2.01
2346 2420 1.272816 TGACATGGGAGGAGTCCGTTA 60.273 52.381 2.76 0.00 45.05 3.18
2347 2421 0.544357 TGACATGGGAGGAGTCCGTT 60.544 55.000 2.76 0.00 45.05 4.44
2348 2422 0.544357 TTGACATGGGAGGAGTCCGT 60.544 55.000 2.76 0.00 45.05 4.69
2349 2423 0.613260 TTTGACATGGGAGGAGTCCG 59.387 55.000 2.76 0.00 45.05 4.79
2350 2424 3.282885 GAATTTGACATGGGAGGAGTCC 58.717 50.000 0.00 0.00 43.05 3.85
2351 2425 2.939103 CGAATTTGACATGGGAGGAGTC 59.061 50.000 0.00 0.00 0.00 3.36
2352 2426 2.356125 CCGAATTTGACATGGGAGGAGT 60.356 50.000 0.00 0.00 0.00 3.85
2353 2427 2.292267 CCGAATTTGACATGGGAGGAG 58.708 52.381 0.00 0.00 0.00 3.69
2354 2428 1.633432 ACCGAATTTGACATGGGAGGA 59.367 47.619 0.00 0.00 0.00 3.71
2355 2429 2.017049 GACCGAATTTGACATGGGAGG 58.983 52.381 0.00 0.00 0.00 4.30
2356 2430 2.991250 AGACCGAATTTGACATGGGAG 58.009 47.619 0.00 0.00 0.00 4.30
2357 2431 3.370103 GGTAGACCGAATTTGACATGGGA 60.370 47.826 0.00 0.00 0.00 4.37
2358 2432 2.943033 GGTAGACCGAATTTGACATGGG 59.057 50.000 0.00 0.00 0.00 4.00
2359 2433 2.943033 GGGTAGACCGAATTTGACATGG 59.057 50.000 0.00 0.00 36.71 3.66
2360 2434 2.943033 GGGGTAGACCGAATTTGACATG 59.057 50.000 0.00 0.00 41.60 3.21
2361 2435 3.277142 GGGGTAGACCGAATTTGACAT 57.723 47.619 0.00 0.00 41.60 3.06
2362 2436 2.773993 GGGGTAGACCGAATTTGACA 57.226 50.000 0.00 0.00 41.60 3.58
2372 2446 2.838693 GAGAGGGCGGGGTAGACC 60.839 72.222 0.00 0.00 40.48 3.85
2373 2447 1.381463 AAGAGAGGGCGGGGTAGAC 60.381 63.158 0.00 0.00 0.00 2.59
2374 2448 1.381327 CAAGAGAGGGCGGGGTAGA 60.381 63.158 0.00 0.00 0.00 2.59
2375 2449 1.381327 TCAAGAGAGGGCGGGGTAG 60.381 63.158 0.00 0.00 0.00 3.18
2376 2450 1.684734 GTCAAGAGAGGGCGGGGTA 60.685 63.158 0.00 0.00 0.00 3.69
2377 2451 3.003763 GTCAAGAGAGGGCGGGGT 61.004 66.667 0.00 0.00 0.00 4.95
2378 2452 1.915078 AATGTCAAGAGAGGGCGGGG 61.915 60.000 0.00 0.00 0.00 5.73
2379 2453 0.462759 GAATGTCAAGAGAGGGCGGG 60.463 60.000 0.00 0.00 0.00 6.13
2380 2454 0.539051 AGAATGTCAAGAGAGGGCGG 59.461 55.000 0.00 0.00 0.00 6.13
2381 2455 1.472376 GGAGAATGTCAAGAGAGGGCG 60.472 57.143 0.00 0.00 0.00 6.13
2382 2456 1.472376 CGGAGAATGTCAAGAGAGGGC 60.472 57.143 0.00 0.00 0.00 5.19
2383 2457 1.472376 GCGGAGAATGTCAAGAGAGGG 60.472 57.143 0.00 0.00 0.00 4.30
2384 2458 1.205655 TGCGGAGAATGTCAAGAGAGG 59.794 52.381 0.00 0.00 0.00 3.69
2385 2459 2.266554 GTGCGGAGAATGTCAAGAGAG 58.733 52.381 0.00 0.00 0.00 3.20
2386 2460 1.402852 CGTGCGGAGAATGTCAAGAGA 60.403 52.381 0.00 0.00 0.00 3.10
2387 2461 0.994995 CGTGCGGAGAATGTCAAGAG 59.005 55.000 0.00 0.00 0.00 2.85
2388 2462 1.014044 GCGTGCGGAGAATGTCAAGA 61.014 55.000 0.00 0.00 0.00 3.02
2389 2463 1.016130 AGCGTGCGGAGAATGTCAAG 61.016 55.000 0.00 0.00 0.00 3.02
2390 2464 0.602638 AAGCGTGCGGAGAATGTCAA 60.603 50.000 0.00 0.00 0.00 3.18
2391 2465 0.602638 AAAGCGTGCGGAGAATGTCA 60.603 50.000 0.00 0.00 0.00 3.58
2392 2466 1.324736 CTAAAGCGTGCGGAGAATGTC 59.675 52.381 0.00 0.00 0.00 3.06
2393 2467 1.359848 CTAAAGCGTGCGGAGAATGT 58.640 50.000 0.00 0.00 0.00 2.71
2394 2468 0.026803 GCTAAAGCGTGCGGAGAATG 59.973 55.000 0.00 0.00 0.00 2.67
2395 2469 1.090052 GGCTAAAGCGTGCGGAGAAT 61.090 55.000 0.00 0.00 43.26 2.40
2396 2470 1.740296 GGCTAAAGCGTGCGGAGAA 60.740 57.895 0.00 0.00 43.26 2.87
2397 2471 2.125673 GGCTAAAGCGTGCGGAGA 60.126 61.111 0.00 0.00 43.26 3.71
2398 2472 3.554692 CGGCTAAAGCGTGCGGAG 61.555 66.667 0.00 0.00 43.26 4.63
2399 2473 4.367023 ACGGCTAAAGCGTGCGGA 62.367 61.111 0.00 0.00 43.26 5.54
2400 2474 3.849953 GACGGCTAAAGCGTGCGG 61.850 66.667 0.00 0.00 43.26 5.69
2401 2475 3.849953 GGACGGCTAAAGCGTGCG 61.850 66.667 0.00 1.74 43.26 5.34
2402 2476 2.740826 TGGACGGCTAAAGCGTGC 60.741 61.111 10.00 10.00 43.26 5.34
2403 2477 0.108992 TAGTGGACGGCTAAAGCGTG 60.109 55.000 0.00 0.00 43.26 5.34
2404 2478 0.822164 ATAGTGGACGGCTAAAGCGT 59.178 50.000 0.00 0.00 43.26 5.07
2405 2479 1.209128 CATAGTGGACGGCTAAAGCG 58.791 55.000 0.00 0.00 43.26 4.68
2406 2480 0.938008 GCATAGTGGACGGCTAAAGC 59.062 55.000 0.00 0.00 41.14 3.51
2407 2481 1.933853 GTGCATAGTGGACGGCTAAAG 59.066 52.381 0.00 0.00 0.00 1.85
2408 2482 1.406341 GGTGCATAGTGGACGGCTAAA 60.406 52.381 0.00 0.00 39.79 1.85
2409 2483 0.177141 GGTGCATAGTGGACGGCTAA 59.823 55.000 0.00 0.00 39.79 3.09
2410 2484 1.820581 GGTGCATAGTGGACGGCTA 59.179 57.895 0.00 0.00 39.79 3.93
2411 2485 2.584608 GGTGCATAGTGGACGGCT 59.415 61.111 0.00 0.00 39.79 5.52
2412 2486 2.890474 CGGTGCATAGTGGACGGC 60.890 66.667 0.00 0.00 39.79 5.68
2413 2487 2.202878 CCGGTGCATAGTGGACGG 60.203 66.667 0.00 2.90 39.79 4.79
2414 2488 1.226974 CTCCGGTGCATAGTGGACG 60.227 63.158 0.00 0.00 39.79 4.79
2415 2489 1.521681 GCTCCGGTGCATAGTGGAC 60.522 63.158 23.09 0.00 38.03 4.02
2416 2490 1.264749 AAGCTCCGGTGCATAGTGGA 61.265 55.000 28.68 0.00 34.99 4.02
2417 2491 0.811616 GAAGCTCCGGTGCATAGTGG 60.812 60.000 28.68 0.00 34.99 4.00
2418 2492 0.176680 AGAAGCTCCGGTGCATAGTG 59.823 55.000 28.68 0.00 34.99 2.74
2419 2493 0.176680 CAGAAGCTCCGGTGCATAGT 59.823 55.000 28.68 11.88 34.99 2.12
2420 2494 0.531532 CCAGAAGCTCCGGTGCATAG 60.532 60.000 28.68 15.36 34.99 2.23
2421 2495 0.975556 TCCAGAAGCTCCGGTGCATA 60.976 55.000 28.68 0.41 34.99 3.14
2422 2496 2.249413 CTCCAGAAGCTCCGGTGCAT 62.249 60.000 28.68 18.66 34.99 3.96
2423 2497 2.922503 TCCAGAAGCTCCGGTGCA 60.923 61.111 28.68 5.56 34.99 4.57
2424 2498 2.125350 CTCCAGAAGCTCCGGTGC 60.125 66.667 20.71 20.71 0.00 5.01
2425 2499 2.581354 CCTCCAGAAGCTCCGGTG 59.419 66.667 0.00 0.00 0.00 4.94
2426 2500 3.394836 GCCTCCAGAAGCTCCGGT 61.395 66.667 0.00 0.00 0.00 5.28
2427 2501 4.168291 GGCCTCCAGAAGCTCCGG 62.168 72.222 0.00 0.00 0.00 5.14
2428 2502 3.080121 AGGCCTCCAGAAGCTCCG 61.080 66.667 0.00 0.00 0.00 4.63
2429 2503 2.588989 CAGGCCTCCAGAAGCTCC 59.411 66.667 0.00 0.00 0.00 4.70
2430 2504 2.124778 GCAGGCCTCCAGAAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
2431 2505 4.093291 CGCAGGCCTCCAGAAGCT 62.093 66.667 0.00 0.00 0.00 3.74
2433 2507 4.093291 AGCGCAGGCCTCCAGAAG 62.093 66.667 11.47 0.00 41.24 2.85
2434 2508 4.399395 CAGCGCAGGCCTCCAGAA 62.399 66.667 11.47 0.00 41.24 3.02
2436 2510 2.315781 TATTCAGCGCAGGCCTCCAG 62.316 60.000 11.47 0.00 41.24 3.86
2437 2511 1.699054 ATATTCAGCGCAGGCCTCCA 61.699 55.000 11.47 0.00 41.24 3.86
2438 2512 1.072159 ATATTCAGCGCAGGCCTCC 59.928 57.895 11.47 0.00 41.24 4.30
2439 2513 1.849976 GCATATTCAGCGCAGGCCTC 61.850 60.000 11.47 0.00 41.24 4.70
2440 2514 1.895707 GCATATTCAGCGCAGGCCT 60.896 57.895 11.47 0.00 41.24 5.19
2441 2515 2.641559 GCATATTCAGCGCAGGCC 59.358 61.111 11.47 0.00 41.24 5.19
2442 2516 2.641559 GGCATATTCAGCGCAGGC 59.358 61.111 11.47 0.29 40.37 4.85
2443 2517 3.348236 GGGCATATTCAGCGCAGG 58.652 61.111 11.47 0.20 43.54 4.85
2446 2520 0.249031 GGTTTGGGCATATTCAGCGC 60.249 55.000 0.00 0.00 44.24 5.92
2447 2521 1.102154 TGGTTTGGGCATATTCAGCG 58.898 50.000 0.00 0.00 0.00 5.18
2448 2522 2.961062 AGATGGTTTGGGCATATTCAGC 59.039 45.455 0.00 0.00 0.00 4.26
2449 2523 4.209538 TGAGATGGTTTGGGCATATTCAG 58.790 43.478 0.00 0.00 0.00 3.02
2450 2524 4.079844 TCTGAGATGGTTTGGGCATATTCA 60.080 41.667 0.00 0.00 0.00 2.57
2451 2525 4.276926 GTCTGAGATGGTTTGGGCATATTC 59.723 45.833 0.00 0.00 0.00 1.75
2452 2526 4.210331 GTCTGAGATGGTTTGGGCATATT 58.790 43.478 0.00 0.00 0.00 1.28
2453 2527 3.745480 CGTCTGAGATGGTTTGGGCATAT 60.745 47.826 0.00 0.00 0.00 1.78
2454 2528 2.419990 CGTCTGAGATGGTTTGGGCATA 60.420 50.000 0.00 0.00 0.00 3.14
2455 2529 1.679944 CGTCTGAGATGGTTTGGGCAT 60.680 52.381 0.00 0.00 0.00 4.40
2456 2530 0.321564 CGTCTGAGATGGTTTGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
2457 2531 0.036388 TCGTCTGAGATGGTTTGGGC 60.036 55.000 1.24 0.00 0.00 5.36
2458 2532 2.283298 CATCGTCTGAGATGGTTTGGG 58.717 52.381 1.24 0.00 43.07 4.12
2459 2533 3.125829 CAACATCGTCTGAGATGGTTTGG 59.874 47.826 16.20 0.00 45.46 3.28
2460 2534 3.125829 CCAACATCGTCTGAGATGGTTTG 59.874 47.826 16.20 12.97 45.46 2.93
2461 2535 3.007940 TCCAACATCGTCTGAGATGGTTT 59.992 43.478 16.20 0.00 45.46 3.27
2462 2536 2.567169 TCCAACATCGTCTGAGATGGTT 59.433 45.455 16.20 0.00 45.46 3.67
2466 2540 3.854666 CTTGTCCAACATCGTCTGAGAT 58.145 45.455 0.00 0.00 0.00 2.75
2467 2541 2.610479 GCTTGTCCAACATCGTCTGAGA 60.610 50.000 0.00 0.00 0.00 3.27
2468 2542 1.728971 GCTTGTCCAACATCGTCTGAG 59.271 52.381 0.00 0.00 0.00 3.35
2469 2543 1.344438 AGCTTGTCCAACATCGTCTGA 59.656 47.619 0.00 0.00 0.00 3.27
2470 2544 1.800805 AGCTTGTCCAACATCGTCTG 58.199 50.000 0.00 0.00 0.00 3.51
2471 2545 2.037772 AGAAGCTTGTCCAACATCGTCT 59.962 45.455 2.10 0.00 0.00 4.18
2472 2546 2.413453 GAGAAGCTTGTCCAACATCGTC 59.587 50.000 12.50 0.00 0.00 4.20
2473 2547 2.037772 AGAGAAGCTTGTCCAACATCGT 59.962 45.455 19.26 0.00 0.00 3.73
2474 2548 2.693069 AGAGAAGCTTGTCCAACATCG 58.307 47.619 19.26 0.00 0.00 3.84
2475 2549 4.067896 TGAAGAGAAGCTTGTCCAACATC 58.932 43.478 19.26 10.83 36.83 3.06
2476 2550 4.090761 TGAAGAGAAGCTTGTCCAACAT 57.909 40.909 19.26 0.00 36.83 2.71
2477 2551 3.558931 TGAAGAGAAGCTTGTCCAACA 57.441 42.857 19.26 13.75 36.83 3.33
2478 2552 5.218139 CAATTGAAGAGAAGCTTGTCCAAC 58.782 41.667 19.26 11.55 36.83 3.77
2479 2553 4.279169 CCAATTGAAGAGAAGCTTGTCCAA 59.721 41.667 19.26 16.61 36.83 3.53
2480 2554 3.822735 CCAATTGAAGAGAAGCTTGTCCA 59.177 43.478 19.26 8.99 36.83 4.02
2481 2555 4.431661 CCAATTGAAGAGAAGCTTGTCC 57.568 45.455 19.26 6.46 36.83 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.