Multiple sequence alignment - TraesCS2A01G311300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G311300 chr2A 100.000 3434 0 0 1 3434 534931405 534934838 0.000000e+00 6342
1 TraesCS2A01G311300 chr2A 95.398 565 20 4 2876 3434 210482298 210481734 0.000000e+00 894
2 TraesCS2A01G311300 chr2A 94.858 564 22 3 2876 3434 458946272 458946833 0.000000e+00 874
3 TraesCS2A01G311300 chr3A 92.400 1250 57 10 1658 2874 645096541 645097785 0.000000e+00 1748
4 TraesCS2A01G311300 chr3A 94.755 286 14 1 1 285 523205643 523205358 8.740000e-121 444
5 TraesCS2A01G311300 chr5A 89.674 1317 114 14 341 1652 300479569 300480868 0.000000e+00 1659
6 TraesCS2A01G311300 chr3B 94.306 966 43 8 1897 2859 669286377 669287333 0.000000e+00 1469
7 TraesCS2A01G311300 chr3B 80.080 251 13 12 1658 1898 669285957 669286180 5.940000e-33 152
8 TraesCS2A01G311300 chr3D 88.682 1237 66 22 1658 2859 506869882 506871079 0.000000e+00 1441
9 TraesCS2A01G311300 chr3D 94.118 289 16 1 1 288 143270204 143269916 4.070000e-119 438
10 TraesCS2A01G311300 chr3D 94.406 286 15 1 1 285 373381410 373381125 4.070000e-119 438
11 TraesCS2A01G311300 chr3D 94.406 286 15 1 1 285 460968853 460968568 4.070000e-119 438
12 TraesCS2A01G311300 chr3D 94.406 286 15 1 1 285 564829942 564830227 4.070000e-119 438
13 TraesCS2A01G311300 chr3D 91.401 314 21 6 2 311 541148921 541148610 3.170000e-115 425
14 TraesCS2A01G311300 chr7A 95.567 564 20 2 2876 3434 657255575 657256138 0.000000e+00 898
15 TraesCS2A01G311300 chr7A 94.336 565 23 5 2876 3433 368606387 368605825 0.000000e+00 857
16 TraesCS2A01G311300 chr4A 95.398 565 19 3 2876 3434 142766893 142766330 0.000000e+00 893
17 TraesCS2A01G311300 chr4A 96.133 543 15 3 2897 3434 123808985 123809526 0.000000e+00 881
18 TraesCS2A01G311300 chr4A 94.690 113 6 0 1489 1601 210274826 210274938 3.520000e-40 176
19 TraesCS2A01G311300 chr6A 95.176 539 24 2 2897 3434 395861479 395862016 0.000000e+00 850
20 TraesCS2A01G311300 chr7B 85.383 732 89 14 678 1401 722187037 722186316 0.000000e+00 743
21 TraesCS2A01G311300 chr7B 85.906 149 16 3 342 490 722187463 722187320 1.650000e-33 154
22 TraesCS2A01G311300 chr6D 95.694 418 13 2 2876 3290 349554747 349555162 0.000000e+00 667
23 TraesCS2A01G311300 chr6D 94.755 286 14 1 1 285 305466810 305467095 8.740000e-121 444
24 TraesCS2A01G311300 chr6D 95.833 144 4 2 3291 3434 249216603 249216462 7.410000e-57 231
25 TraesCS2A01G311300 chr6B 93.095 420 23 2 2876 3290 141085665 141085247 8.150000e-171 610
26 TraesCS2A01G311300 chr5D 94.406 286 15 1 1 285 74317552 74317267 4.070000e-119 438
27 TraesCS2A01G311300 chr4D 94.406 286 15 1 1 285 39968774 39968489 4.070000e-119 438
28 TraesCS2A01G311300 chr4B 92.344 209 15 1 1397 1604 171407625 171407417 2.590000e-76 296
29 TraesCS2A01G311300 chr1B 89.952 209 20 1 1397 1604 571982065 571982273 5.650000e-68 268
30 TraesCS2A01G311300 chrUn 95.172 145 5 2 3291 3434 331651556 331651413 9.590000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G311300 chr2A 534931405 534934838 3433 False 6342.0 6342 100.0000 1 3434 1 chr2A.!!$F2 3433
1 TraesCS2A01G311300 chr2A 210481734 210482298 564 True 894.0 894 95.3980 2876 3434 1 chr2A.!!$R1 558
2 TraesCS2A01G311300 chr2A 458946272 458946833 561 False 874.0 874 94.8580 2876 3434 1 chr2A.!!$F1 558
3 TraesCS2A01G311300 chr3A 645096541 645097785 1244 False 1748.0 1748 92.4000 1658 2874 1 chr3A.!!$F1 1216
4 TraesCS2A01G311300 chr5A 300479569 300480868 1299 False 1659.0 1659 89.6740 341 1652 1 chr5A.!!$F1 1311
5 TraesCS2A01G311300 chr3B 669285957 669287333 1376 False 810.5 1469 87.1930 1658 2859 2 chr3B.!!$F1 1201
6 TraesCS2A01G311300 chr3D 506869882 506871079 1197 False 1441.0 1441 88.6820 1658 2859 1 chr3D.!!$F1 1201
7 TraesCS2A01G311300 chr7A 657255575 657256138 563 False 898.0 898 95.5670 2876 3434 1 chr7A.!!$F1 558
8 TraesCS2A01G311300 chr7A 368605825 368606387 562 True 857.0 857 94.3360 2876 3433 1 chr7A.!!$R1 557
9 TraesCS2A01G311300 chr4A 142766330 142766893 563 True 893.0 893 95.3980 2876 3434 1 chr4A.!!$R1 558
10 TraesCS2A01G311300 chr4A 123808985 123809526 541 False 881.0 881 96.1330 2897 3434 1 chr4A.!!$F1 537
11 TraesCS2A01G311300 chr6A 395861479 395862016 537 False 850.0 850 95.1760 2897 3434 1 chr6A.!!$F1 537
12 TraesCS2A01G311300 chr7B 722186316 722187463 1147 True 448.5 743 85.6445 342 1401 2 chr7B.!!$R1 1059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.034896 TCTCCCTCTTCGTGCAAACC 59.965 55.0 0.0 0.0 0.00 3.27 F
40 41 0.035458 CTCCCTCTTCGTGCAAACCT 59.965 55.0 0.0 0.0 0.00 3.50 F
1100 1203 0.179702 TGCCCTTGCTCTGCATCTAG 59.820 55.0 0.0 0.0 38.76 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1602 0.252881 TGCAGAGATTGGGGAGAGGT 60.253 55.0 0.0 0.0 0.00 3.85 R
1559 1664 0.460987 GTTGGGGACAGCGAGATCAG 60.461 60.0 0.0 0.0 44.54 2.90 R
2759 3100 0.321653 CCACTTTTGCTAGGCGGTCT 60.322 55.0 0.0 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.865865 AGAATTCTAGCTGCCGGC 57.134 55.556 22.73 22.73 42.19 6.13
18 19 1.907739 AGAATTCTAGCTGCCGGCA 59.092 52.632 30.59 30.59 44.79 5.69
19 20 0.471617 AGAATTCTAGCTGCCGGCAT 59.528 50.000 32.87 19.78 44.79 4.40
20 21 1.133976 AGAATTCTAGCTGCCGGCATT 60.134 47.619 32.87 23.41 44.79 3.56
21 22 1.265365 GAATTCTAGCTGCCGGCATTC 59.735 52.381 32.87 24.10 44.79 2.67
22 23 0.471617 ATTCTAGCTGCCGGCATTCT 59.528 50.000 32.87 29.45 44.79 2.40
23 24 0.179073 TTCTAGCTGCCGGCATTCTC 60.179 55.000 32.87 18.90 44.79 2.87
24 25 1.596477 CTAGCTGCCGGCATTCTCC 60.596 63.158 32.87 15.69 44.79 3.71
25 26 3.106986 TAGCTGCCGGCATTCTCCC 62.107 63.158 32.87 13.85 44.79 4.30
26 27 4.496336 GCTGCCGGCATTCTCCCT 62.496 66.667 32.87 0.00 41.35 4.20
27 28 2.203126 CTGCCGGCATTCTCCCTC 60.203 66.667 32.87 0.00 0.00 4.30
28 29 2.688666 TGCCGGCATTCTCCCTCT 60.689 61.111 29.03 0.00 0.00 3.69
29 30 2.262774 CTGCCGGCATTCTCCCTCTT 62.263 60.000 32.87 0.00 0.00 2.85
30 31 1.524849 GCCGGCATTCTCCCTCTTC 60.525 63.158 24.80 0.00 0.00 2.87
31 32 1.227380 CCGGCATTCTCCCTCTTCG 60.227 63.158 0.00 0.00 0.00 3.79
32 33 1.517832 CGGCATTCTCCCTCTTCGT 59.482 57.895 0.00 0.00 0.00 3.85
33 34 0.807667 CGGCATTCTCCCTCTTCGTG 60.808 60.000 0.00 0.00 0.00 4.35
34 35 1.092345 GGCATTCTCCCTCTTCGTGC 61.092 60.000 0.00 0.00 0.00 5.34
35 36 0.391661 GCATTCTCCCTCTTCGTGCA 60.392 55.000 0.00 0.00 0.00 4.57
36 37 1.945819 GCATTCTCCCTCTTCGTGCAA 60.946 52.381 0.00 0.00 0.00 4.08
37 38 2.426522 CATTCTCCCTCTTCGTGCAAA 58.573 47.619 0.00 0.00 0.00 3.68
38 39 1.878953 TTCTCCCTCTTCGTGCAAAC 58.121 50.000 0.00 0.00 0.00 2.93
39 40 0.034896 TCTCCCTCTTCGTGCAAACC 59.965 55.000 0.00 0.00 0.00 3.27
40 41 0.035458 CTCCCTCTTCGTGCAAACCT 59.965 55.000 0.00 0.00 0.00 3.50
41 42 0.472471 TCCCTCTTCGTGCAAACCTT 59.528 50.000 0.00 0.00 0.00 3.50
42 43 0.593128 CCCTCTTCGTGCAAACCTTG 59.407 55.000 0.00 0.00 0.00 3.61
43 44 1.308998 CCTCTTCGTGCAAACCTTGT 58.691 50.000 0.00 0.00 0.00 3.16
44 45 2.489971 CCTCTTCGTGCAAACCTTGTA 58.510 47.619 0.00 0.00 0.00 2.41
45 46 2.875933 CCTCTTCGTGCAAACCTTGTAA 59.124 45.455 0.00 0.00 0.00 2.41
46 47 3.314080 CCTCTTCGTGCAAACCTTGTAAA 59.686 43.478 0.00 0.00 0.00 2.01
47 48 4.201970 CCTCTTCGTGCAAACCTTGTAAAA 60.202 41.667 0.00 0.00 0.00 1.52
48 49 5.507315 CCTCTTCGTGCAAACCTTGTAAAAT 60.507 40.000 0.00 0.00 0.00 1.82
49 50 6.293735 CCTCTTCGTGCAAACCTTGTAAAATA 60.294 38.462 0.00 0.00 0.00 1.40
50 51 7.028926 TCTTCGTGCAAACCTTGTAAAATAA 57.971 32.000 0.00 0.00 0.00 1.40
51 52 7.136119 TCTTCGTGCAAACCTTGTAAAATAAG 58.864 34.615 0.00 0.00 0.00 1.73
52 53 6.621316 TCGTGCAAACCTTGTAAAATAAGA 57.379 33.333 0.00 0.00 0.00 2.10
53 54 6.664515 TCGTGCAAACCTTGTAAAATAAGAG 58.335 36.000 0.00 0.00 0.00 2.85
54 55 6.483974 TCGTGCAAACCTTGTAAAATAAGAGA 59.516 34.615 0.00 0.00 0.00 3.10
55 56 6.797033 CGTGCAAACCTTGTAAAATAAGAGAG 59.203 38.462 0.00 0.00 0.00 3.20
56 57 7.307751 CGTGCAAACCTTGTAAAATAAGAGAGA 60.308 37.037 0.00 0.00 0.00 3.10
57 58 8.349983 GTGCAAACCTTGTAAAATAAGAGAGAA 58.650 33.333 0.00 0.00 0.00 2.87
58 59 9.077885 TGCAAACCTTGTAAAATAAGAGAGAAT 57.922 29.630 0.00 0.00 0.00 2.40
63 64 9.905713 ACCTTGTAAAATAAGAGAGAATATGCA 57.094 29.630 0.00 0.00 0.00 3.96
76 77 9.703892 AGAGAGAATATGCATAAGTATTGTGAC 57.296 33.333 11.13 0.00 39.84 3.67
77 78 9.481340 GAGAGAATATGCATAAGTATTGTGACA 57.519 33.333 11.13 0.00 39.84 3.58
84 85 7.538303 TGCATAAGTATTGTGACATAGTGTG 57.462 36.000 0.00 0.00 39.84 3.82
85 86 7.102993 TGCATAAGTATTGTGACATAGTGTGT 58.897 34.615 0.00 0.00 39.84 3.72
86 87 8.254508 TGCATAAGTATTGTGACATAGTGTGTA 58.745 33.333 0.00 0.00 39.84 2.90
87 88 9.093970 GCATAAGTATTGTGACATAGTGTGTAA 57.906 33.333 0.00 0.00 39.84 2.41
94 95 6.961359 TGTGACATAGTGTGTAATAACAGC 57.039 37.500 0.00 0.00 42.36 4.40
95 96 5.872617 TGTGACATAGTGTGTAATAACAGCC 59.127 40.000 0.00 0.00 42.36 4.85
96 97 5.293569 GTGACATAGTGTGTAATAACAGCCC 59.706 44.000 0.00 0.00 42.36 5.19
97 98 5.046231 TGACATAGTGTGTAATAACAGCCCA 60.046 40.000 0.00 0.00 42.36 5.36
98 99 6.001449 ACATAGTGTGTAATAACAGCCCAT 57.999 37.500 0.00 0.00 39.91 4.00
99 100 7.131907 ACATAGTGTGTAATAACAGCCCATA 57.868 36.000 0.00 0.00 39.91 2.74
100 101 7.570132 ACATAGTGTGTAATAACAGCCCATAA 58.430 34.615 0.00 0.00 39.91 1.90
101 102 8.217799 ACATAGTGTGTAATAACAGCCCATAAT 58.782 33.333 0.00 0.00 39.91 1.28
102 103 9.719355 CATAGTGTGTAATAACAGCCCATAATA 57.281 33.333 0.00 0.00 35.91 0.98
103 104 9.720769 ATAGTGTGTAATAACAGCCCATAATAC 57.279 33.333 0.00 0.00 35.91 1.89
104 105 7.570132 AGTGTGTAATAACAGCCCATAATACA 58.430 34.615 0.00 0.00 35.91 2.29
105 106 8.050325 AGTGTGTAATAACAGCCCATAATACAA 58.950 33.333 0.00 0.00 35.91 2.41
106 107 8.846211 GTGTGTAATAACAGCCCATAATACAAT 58.154 33.333 0.00 0.00 35.91 2.71
115 116 9.733556 AACAGCCCATAATACAATAAATATCGA 57.266 29.630 0.00 0.00 0.00 3.59
116 117 9.905713 ACAGCCCATAATACAATAAATATCGAT 57.094 29.630 2.16 2.16 0.00 3.59
146 147 5.509771 GCATGATGCAAAATGTACGTATCA 58.490 37.500 13.36 0.00 44.26 2.15
147 148 5.970612 GCATGATGCAAAATGTACGTATCAA 59.029 36.000 13.36 0.00 44.26 2.57
148 149 6.075415 GCATGATGCAAAATGTACGTATCAAC 60.075 38.462 13.36 0.00 44.26 3.18
149 150 6.735678 TGATGCAAAATGTACGTATCAACT 57.264 33.333 0.00 0.00 0.00 3.16
150 151 6.771076 TGATGCAAAATGTACGTATCAACTC 58.229 36.000 0.00 0.00 0.00 3.01
151 152 5.539582 TGCAAAATGTACGTATCAACTCC 57.460 39.130 0.00 0.00 0.00 3.85
152 153 4.393680 TGCAAAATGTACGTATCAACTCCC 59.606 41.667 0.00 0.00 0.00 4.30
153 154 4.201881 GCAAAATGTACGTATCAACTCCCC 60.202 45.833 0.00 0.00 0.00 4.81
154 155 3.832615 AATGTACGTATCAACTCCCCC 57.167 47.619 0.00 0.00 0.00 5.40
155 156 2.234896 TGTACGTATCAACTCCCCCA 57.765 50.000 0.00 0.00 0.00 4.96
156 157 2.538222 TGTACGTATCAACTCCCCCAA 58.462 47.619 0.00 0.00 0.00 4.12
157 158 2.498481 TGTACGTATCAACTCCCCCAAG 59.502 50.000 0.00 0.00 0.00 3.61
158 159 1.652947 ACGTATCAACTCCCCCAAGT 58.347 50.000 0.00 0.00 0.00 3.16
159 160 1.982958 ACGTATCAACTCCCCCAAGTT 59.017 47.619 0.00 0.00 40.08 2.66
160 161 2.374170 ACGTATCAACTCCCCCAAGTTT 59.626 45.455 0.00 0.00 37.38 2.66
161 162 3.583966 ACGTATCAACTCCCCCAAGTTTA 59.416 43.478 0.00 0.00 37.38 2.01
162 163 4.189231 CGTATCAACTCCCCCAAGTTTAG 58.811 47.826 0.00 0.00 37.38 1.85
163 164 4.081309 CGTATCAACTCCCCCAAGTTTAGA 60.081 45.833 0.00 0.00 37.38 2.10
164 165 3.782656 TCAACTCCCCCAAGTTTAGAC 57.217 47.619 0.00 0.00 37.38 2.59
165 166 2.374170 TCAACTCCCCCAAGTTTAGACC 59.626 50.000 0.00 0.00 37.38 3.85
166 167 2.375509 CAACTCCCCCAAGTTTAGACCT 59.624 50.000 0.00 0.00 37.38 3.85
167 168 2.267192 ACTCCCCCAAGTTTAGACCTC 58.733 52.381 0.00 0.00 0.00 3.85
168 169 1.207329 CTCCCCCAAGTTTAGACCTCG 59.793 57.143 0.00 0.00 0.00 4.63
169 170 0.392595 CCCCCAAGTTTAGACCTCGC 60.393 60.000 0.00 0.00 0.00 5.03
170 171 0.613777 CCCCAAGTTTAGACCTCGCT 59.386 55.000 0.00 0.00 0.00 4.93
171 172 1.003233 CCCCAAGTTTAGACCTCGCTT 59.997 52.381 0.00 0.00 0.00 4.68
172 173 2.076863 CCCAAGTTTAGACCTCGCTTG 58.923 52.381 0.00 0.00 37.04 4.01
173 174 2.550208 CCCAAGTTTAGACCTCGCTTGT 60.550 50.000 0.00 0.00 35.94 3.16
174 175 2.737252 CCAAGTTTAGACCTCGCTTGTC 59.263 50.000 0.00 0.00 35.94 3.18
175 176 2.737252 CAAGTTTAGACCTCGCTTGTCC 59.263 50.000 0.00 0.00 33.83 4.02
176 177 2.249139 AGTTTAGACCTCGCTTGTCCT 58.751 47.619 0.00 0.00 33.09 3.85
177 178 2.231721 AGTTTAGACCTCGCTTGTCCTC 59.768 50.000 0.00 0.00 33.09 3.71
178 179 1.919240 TTAGACCTCGCTTGTCCTCA 58.081 50.000 0.00 0.00 33.09 3.86
179 180 1.919240 TAGACCTCGCTTGTCCTCAA 58.081 50.000 0.00 0.00 33.09 3.02
188 189 1.528129 CTTGTCCTCAAGTGGAAGCC 58.472 55.000 0.00 0.00 44.09 4.35
189 190 0.250295 TTGTCCTCAAGTGGAAGCCG 60.250 55.000 0.00 0.00 37.93 5.52
190 191 1.118965 TGTCCTCAAGTGGAAGCCGA 61.119 55.000 0.00 0.00 37.93 5.54
191 192 0.250513 GTCCTCAAGTGGAAGCCGAT 59.749 55.000 0.00 0.00 37.93 4.18
192 193 1.480954 GTCCTCAAGTGGAAGCCGATA 59.519 52.381 0.00 0.00 37.93 2.92
193 194 2.093658 GTCCTCAAGTGGAAGCCGATAA 60.094 50.000 0.00 0.00 37.93 1.75
194 195 2.093658 TCCTCAAGTGGAAGCCGATAAC 60.094 50.000 0.00 0.00 32.39 1.89
195 196 1.927174 CTCAAGTGGAAGCCGATAACG 59.073 52.381 0.00 0.00 39.43 3.18
196 197 1.546923 TCAAGTGGAAGCCGATAACGA 59.453 47.619 0.00 0.00 42.66 3.85
197 198 2.028839 TCAAGTGGAAGCCGATAACGAA 60.029 45.455 0.00 0.00 42.66 3.85
198 199 2.739913 CAAGTGGAAGCCGATAACGAAA 59.260 45.455 0.00 0.00 42.66 3.46
199 200 3.048337 AGTGGAAGCCGATAACGAAAA 57.952 42.857 0.00 0.00 42.66 2.29
200 201 3.404899 AGTGGAAGCCGATAACGAAAAA 58.595 40.909 0.00 0.00 42.66 1.94
201 202 4.007659 AGTGGAAGCCGATAACGAAAAAT 58.992 39.130 0.00 0.00 42.66 1.82
202 203 5.180271 AGTGGAAGCCGATAACGAAAAATA 58.820 37.500 0.00 0.00 42.66 1.40
203 204 5.820947 AGTGGAAGCCGATAACGAAAAATAT 59.179 36.000 0.00 0.00 42.66 1.28
204 205 5.907391 GTGGAAGCCGATAACGAAAAATATG 59.093 40.000 0.00 0.00 42.66 1.78
205 206 5.587043 TGGAAGCCGATAACGAAAAATATGT 59.413 36.000 0.00 0.00 42.66 2.29
206 207 6.134061 GGAAGCCGATAACGAAAAATATGTC 58.866 40.000 0.00 0.00 42.66 3.06
207 208 5.668558 AGCCGATAACGAAAAATATGTCC 57.331 39.130 0.00 0.00 42.66 4.02
208 209 5.120399 AGCCGATAACGAAAAATATGTCCA 58.880 37.500 0.00 0.00 42.66 4.02
209 210 5.007332 AGCCGATAACGAAAAATATGTCCAC 59.993 40.000 0.00 0.00 42.66 4.02
210 211 5.220700 GCCGATAACGAAAAATATGTCCACA 60.221 40.000 0.00 0.00 42.66 4.17
211 212 6.512741 GCCGATAACGAAAAATATGTCCACAT 60.513 38.462 0.00 0.00 42.66 3.21
212 213 6.850823 CCGATAACGAAAAATATGTCCACATG 59.149 38.462 2.26 0.00 42.66 3.21
213 214 7.406553 CGATAACGAAAAATATGTCCACATGT 58.593 34.615 2.26 0.00 42.66 3.21
214 215 7.908082 CGATAACGAAAAATATGTCCACATGTT 59.092 33.333 0.00 0.00 42.66 2.71
215 216 9.567848 GATAACGAAAAATATGTCCACATGTTT 57.432 29.630 8.22 8.22 45.42 2.83
217 218 8.964420 AACGAAAAATATGTCCACATGTTTAG 57.036 30.769 13.02 10.59 43.63 1.85
218 219 8.330466 ACGAAAAATATGTCCACATGTTTAGA 57.670 30.769 13.02 0.00 43.63 2.10
219 220 8.956426 ACGAAAAATATGTCCACATGTTTAGAT 58.044 29.630 13.02 5.21 43.63 1.98
227 228 7.914427 TGTCCACATGTTTAGATATAGAGGT 57.086 36.000 0.00 0.00 0.00 3.85
228 229 9.601810 ATGTCCACATGTTTAGATATAGAGGTA 57.398 33.333 0.00 0.00 34.83 3.08
229 230 9.601810 TGTCCACATGTTTAGATATAGAGGTAT 57.398 33.333 0.00 0.00 0.00 2.73
231 232 9.822727 TCCACATGTTTAGATATAGAGGTATCA 57.177 33.333 0.00 0.00 34.27 2.15
255 256 9.062524 TCAATAAATAAAATACGGACATGAGGG 57.937 33.333 0.00 0.00 0.00 4.30
256 257 5.767816 AAATAAAATACGGACATGAGGGC 57.232 39.130 0.00 0.00 0.00 5.19
257 258 2.799126 AAAATACGGACATGAGGGCA 57.201 45.000 0.00 0.00 0.00 5.36
258 259 3.297134 AAAATACGGACATGAGGGCAT 57.703 42.857 0.00 0.00 34.29 4.40
259 260 2.550830 AATACGGACATGAGGGCATC 57.449 50.000 0.00 0.00 30.68 3.91
260 261 1.423584 ATACGGACATGAGGGCATCA 58.576 50.000 3.57 3.57 43.70 3.07
273 274 6.644248 TGAGGGCATCATGATCATTTTTAG 57.356 37.500 5.16 0.00 31.12 1.85
274 275 6.367161 TGAGGGCATCATGATCATTTTTAGA 58.633 36.000 5.16 0.00 31.12 2.10
275 276 6.834969 TGAGGGCATCATGATCATTTTTAGAA 59.165 34.615 5.16 0.00 31.12 2.10
276 277 7.047460 AGGGCATCATGATCATTTTTAGAAC 57.953 36.000 5.16 0.00 0.00 3.01
277 278 6.608405 AGGGCATCATGATCATTTTTAGAACA 59.392 34.615 5.16 0.00 0.00 3.18
278 279 7.124599 AGGGCATCATGATCATTTTTAGAACAA 59.875 33.333 5.16 0.00 0.00 2.83
279 280 7.223387 GGGCATCATGATCATTTTTAGAACAAC 59.777 37.037 5.16 0.00 0.00 3.32
280 281 7.760794 GGCATCATGATCATTTTTAGAACAACA 59.239 33.333 5.16 0.00 0.00 3.33
281 282 9.142515 GCATCATGATCATTTTTAGAACAACAA 57.857 29.630 5.16 0.00 0.00 2.83
294 295 9.645059 TTTTAGAACAACAACATTTGAATCACA 57.355 25.926 0.00 0.00 0.00 3.58
295 296 9.814899 TTTAGAACAACAACATTTGAATCACAT 57.185 25.926 0.00 0.00 0.00 3.21
298 299 7.596248 AGAACAACAACATTTGAATCACATAGC 59.404 33.333 0.00 0.00 0.00 2.97
299 300 5.858049 ACAACAACATTTGAATCACATAGCG 59.142 36.000 0.00 0.00 0.00 4.26
300 301 5.627499 ACAACATTTGAATCACATAGCGT 57.373 34.783 0.00 0.00 0.00 5.07
301 302 6.012658 ACAACATTTGAATCACATAGCGTT 57.987 33.333 0.00 0.00 0.00 4.84
302 303 7.139896 ACAACATTTGAATCACATAGCGTTA 57.860 32.000 0.00 0.00 0.00 3.18
303 304 7.761409 ACAACATTTGAATCACATAGCGTTAT 58.239 30.769 0.00 0.00 0.00 1.89
304 305 8.888716 ACAACATTTGAATCACATAGCGTTATA 58.111 29.630 0.00 0.00 0.00 0.98
305 306 9.882996 CAACATTTGAATCACATAGCGTTATAT 57.117 29.630 0.00 0.00 0.00 0.86
316 317 8.996271 TCACATAGCGTTATATATATAGGGACG 58.004 37.037 16.12 16.12 0.00 4.79
317 318 8.996271 CACATAGCGTTATATATATAGGGACGA 58.004 37.037 21.41 8.53 0.00 4.20
318 319 9.736414 ACATAGCGTTATATATATAGGGACGAT 57.264 33.333 21.41 18.81 0.00 3.73
320 321 9.955102 ATAGCGTTATATATATAGGGACGATCA 57.045 33.333 21.41 10.62 0.00 2.92
321 322 8.687292 AGCGTTATATATATAGGGACGATCAA 57.313 34.615 21.41 0.00 0.00 2.57
322 323 9.128404 AGCGTTATATATATAGGGACGATCAAA 57.872 33.333 21.41 0.00 0.00 2.69
323 324 9.909644 GCGTTATATATATAGGGACGATCAAAT 57.090 33.333 21.41 0.00 0.00 2.32
330 331 9.871238 ATATATAGGGACGATCAAATGTTACAC 57.129 33.333 0.00 0.00 0.00 2.90
331 332 4.280436 AGGGACGATCAAATGTTACACA 57.720 40.909 0.00 0.00 0.00 3.72
332 333 4.647611 AGGGACGATCAAATGTTACACAA 58.352 39.130 0.00 0.00 0.00 3.33
333 334 4.695455 AGGGACGATCAAATGTTACACAAG 59.305 41.667 0.00 0.00 0.00 3.16
334 335 4.142687 GGGACGATCAAATGTTACACAAGG 60.143 45.833 0.00 0.00 0.00 3.61
335 336 4.403453 GACGATCAAATGTTACACAAGGC 58.597 43.478 0.00 0.00 0.00 4.35
336 337 3.120338 ACGATCAAATGTTACACAAGGCG 60.120 43.478 0.00 0.00 0.00 5.52
337 338 3.124466 CGATCAAATGTTACACAAGGCGA 59.876 43.478 0.00 0.00 0.00 5.54
338 339 3.889196 TCAAATGTTACACAAGGCGAC 57.111 42.857 0.00 0.00 0.00 5.19
339 340 2.550606 TCAAATGTTACACAAGGCGACC 59.449 45.455 0.00 0.00 0.00 4.79
359 360 6.643770 GCGACCGGATTAGAATAACTATTTGA 59.356 38.462 9.46 0.00 0.00 2.69
391 392 5.955959 AGTGTTATATATACAGGGGCGATCA 59.044 40.000 0.00 0.00 0.00 2.92
392 393 6.439375 AGTGTTATATATACAGGGGCGATCAA 59.561 38.462 0.00 0.00 0.00 2.57
414 415 0.322546 GTTCCTGAACCCAGCCGAAT 60.323 55.000 0.00 0.00 39.07 3.34
420 421 1.691976 TGAACCCAGCCGAATCGATAT 59.308 47.619 3.36 0.00 0.00 1.63
511 512 4.214327 CCGCCGGCCTCTCTCTTC 62.214 72.222 23.46 0.00 0.00 2.87
518 519 1.468395 CGGCCTCTCTCTTCGTTCTTC 60.468 57.143 0.00 0.00 0.00 2.87
522 523 0.526662 TCTCTCTTCGTTCTTCCGCC 59.473 55.000 0.00 0.00 0.00 6.13
582 583 3.966543 CCTCCCACCCCGTGCTTT 61.967 66.667 0.00 0.00 31.34 3.51
702 798 2.928396 CCACGACCAACCTCCCCT 60.928 66.667 0.00 0.00 0.00 4.79
703 799 2.347490 CACGACCAACCTCCCCTG 59.653 66.667 0.00 0.00 0.00 4.45
716 814 4.101448 CCCTGCTTCCACTCCGGG 62.101 72.222 0.00 0.00 34.36 5.73
728 826 4.880426 TCCGGGGATGGCCTCTCC 62.880 72.222 14.65 14.65 41.71 3.71
777 875 1.418097 TATGCGCCATCCTCCACCAT 61.418 55.000 4.18 0.00 0.00 3.55
783 881 1.676678 CCATCCTCCACCATCGTCGT 61.677 60.000 0.00 0.00 0.00 4.34
821 923 1.071471 ACTGTTTGCCAGGACCTCG 59.929 57.895 0.00 0.00 46.06 4.63
826 928 1.541310 TTTGCCAGGACCTCGTCGAT 61.541 55.000 0.00 0.00 32.65 3.59
868 970 4.246206 CATCGTCCGACGCGCCTA 62.246 66.667 16.24 0.00 42.21 3.93
869 971 3.950254 ATCGTCCGACGCGCCTAG 61.950 66.667 16.24 0.00 42.21 3.02
872 974 3.580193 GTCCGACGCGCCTAGCTA 61.580 66.667 5.73 0.00 45.59 3.32
933 1035 3.766691 GCGTGCTTCCCCCTACGA 61.767 66.667 0.00 0.00 38.72 3.43
941 1043 3.000819 CCCCCTACGACCACTGCA 61.001 66.667 0.00 0.00 0.00 4.41
946 1048 2.125713 TACGACCACTGCATGCCG 60.126 61.111 16.68 12.01 0.00 5.69
1078 1181 1.215382 CATGACGGTCGCCTCTTCA 59.785 57.895 3.34 0.00 0.00 3.02
1100 1203 0.179702 TGCCCTTGCTCTGCATCTAG 59.820 55.000 0.00 0.00 38.76 2.43
1120 1223 6.777526 CTAGTAGGCTAGAAATTGCACATC 57.222 41.667 0.00 0.00 45.77 3.06
1138 1241 4.564372 CACATCTGTATTTGGACGTCAGAG 59.436 45.833 18.91 4.24 38.30 3.35
1220 1324 1.296392 CTGCACCCAATCTCCGACA 59.704 57.895 0.00 0.00 0.00 4.35
1231 1335 1.933021 TCTCCGACACTGTAACCCAT 58.067 50.000 0.00 0.00 0.00 4.00
1240 1344 1.206371 ACTGTAACCCATGTACGCCTC 59.794 52.381 0.00 0.00 0.00 4.70
1349 1453 1.064685 TGTCATCGCAGGTAGAGGAGA 60.065 52.381 0.00 0.00 0.00 3.71
1435 1540 4.436998 CCCCGAGTCGTCTGTGGC 62.437 72.222 12.31 0.00 0.00 5.01
1474 1579 3.787001 AGCGAGCACCTTAGGGGC 61.787 66.667 19.36 19.36 39.10 5.80
1505 1610 2.363925 AGGCCACGTACCTCTCCC 60.364 66.667 5.01 0.00 28.76 4.30
1534 1639 1.006102 AACGAGAAGCCACCGACTG 60.006 57.895 0.00 0.00 0.00 3.51
1559 1664 2.420890 CGAGCTCCTGGATCCTGC 59.579 66.667 14.23 11.79 0.00 4.85
1613 1718 3.159353 CGGACATCGTTTCCTATGACA 57.841 47.619 0.00 0.00 0.00 3.58
1627 1732 1.056660 ATGACAGTTTCCGACACCCT 58.943 50.000 0.00 0.00 0.00 4.34
1642 1747 0.179040 ACCCTGTGGTGTTGTTACCG 60.179 55.000 0.00 0.00 45.58 4.02
1652 1757 2.473984 GTGTTGTTACCGTCAGCTACAC 59.526 50.000 0.00 0.00 31.14 2.90
1653 1758 2.064014 GTTGTTACCGTCAGCTACACC 58.936 52.381 0.00 0.00 0.00 4.16
1654 1759 0.604578 TGTTACCGTCAGCTACACCC 59.395 55.000 0.00 0.00 0.00 4.61
1655 1760 0.893447 GTTACCGTCAGCTACACCCT 59.107 55.000 0.00 0.00 0.00 4.34
1656 1761 0.892755 TTACCGTCAGCTACACCCTG 59.107 55.000 0.00 0.00 0.00 4.45
1747 1858 6.833933 AGATAAGAACCATGAATTTGTACCCC 59.166 38.462 0.00 0.00 0.00 4.95
1805 1916 9.844790 CATCTGTAAATGTATCAGAAAAAGCAA 57.155 29.630 0.00 0.00 40.73 3.91
1869 1980 3.023119 TGGATTCATAAATGTTGCGGCT 58.977 40.909 0.00 0.00 0.00 5.52
1889 2005 3.742013 GCTGGGCCCAAATTCATATTGTG 60.742 47.826 28.29 10.36 0.00 3.33
1948 2260 7.041721 TCATGTGCTTACTATGTTGGTCTTAG 58.958 38.462 0.00 0.00 0.00 2.18
2063 2376 6.207614 AGGCAATTGATCTTGATGATGATGAG 59.792 38.462 10.34 0.00 35.14 2.90
2161 2474 8.884124 TGGACTTGATTTTAATTCCTTCAGAT 57.116 30.769 0.00 0.00 32.36 2.90
2180 2493 4.823989 CAGATTTGTGTTCAGACCTTTCCT 59.176 41.667 0.00 0.00 0.00 3.36
2211 2524 7.701539 TTTCACCATGTGTTGCTATTTATCT 57.298 32.000 0.00 0.00 34.79 1.98
2245 2559 5.645497 GGTGTTGCAAGATATCTCAAGACTT 59.355 40.000 22.81 1.02 34.44 3.01
2429 2757 1.963515 GAAAAAGGTGTGTGGAGGCAT 59.036 47.619 0.00 0.00 0.00 4.40
2435 2763 0.324943 GTGTGTGGAGGCATGTAGGT 59.675 55.000 0.00 0.00 0.00 3.08
2540 2869 3.833650 TGAATAGTCCCGGTCTGTAACAA 59.166 43.478 0.00 0.00 0.00 2.83
2603 2942 2.009226 CGTCGCATGGGATCGTACG 61.009 63.158 16.24 9.53 0.00 3.67
2655 2996 1.004044 CTGCTCCATTGACAGGTCCTT 59.996 52.381 0.00 0.00 0.00 3.36
2758 3099 5.087323 AGACAGATTTCTAGACCAAGACCA 58.913 41.667 0.00 0.00 0.00 4.02
2759 3100 5.544176 AGACAGATTTCTAGACCAAGACCAA 59.456 40.000 0.00 0.00 0.00 3.67
2760 3101 5.799213 ACAGATTTCTAGACCAAGACCAAG 58.201 41.667 0.00 0.00 0.00 3.61
2761 3102 5.544176 ACAGATTTCTAGACCAAGACCAAGA 59.456 40.000 0.00 0.00 0.00 3.02
2762 3103 5.872070 CAGATTTCTAGACCAAGACCAAGAC 59.128 44.000 0.00 0.00 0.00 3.01
2763 3104 4.618920 TTTCTAGACCAAGACCAAGACC 57.381 45.455 0.00 0.00 0.00 3.85
2764 3105 2.168496 TCTAGACCAAGACCAAGACCG 58.832 52.381 0.00 0.00 0.00 4.79
2832 3174 4.081406 ACAGCACCATCAACAACATACAT 58.919 39.130 0.00 0.00 0.00 2.29
2848 3190 9.896645 ACAACATACATATTGTCTTCTTCATCT 57.103 29.630 0.00 0.00 33.80 2.90
2859 3201 2.672961 TCTTCATCTTCGCCATCGTT 57.327 45.000 0.00 0.00 36.96 3.85
2874 3216 2.935955 GTTGTCGTGACTTGGCCG 59.064 61.111 0.00 0.00 0.00 6.13
3144 3487 8.498054 ACATACAGAAGAAATTCATCGAATGT 57.502 30.769 8.93 8.93 32.14 2.71
3381 3735 6.861065 TGATGTTTCTAACAGAACTCCAAC 57.139 37.500 0.00 0.00 45.95 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.471617 ATGCCGGCAGCTAGAATTCT 59.528 50.000 35.36 13.56 44.23 2.40
1 2 1.265365 GAATGCCGGCAGCTAGAATTC 59.735 52.381 35.36 25.68 44.23 2.17
2 3 1.133976 AGAATGCCGGCAGCTAGAATT 60.134 47.619 35.36 21.97 44.23 2.17
3 4 0.471617 AGAATGCCGGCAGCTAGAAT 59.528 50.000 35.36 13.63 44.23 2.40
4 5 0.179073 GAGAATGCCGGCAGCTAGAA 60.179 55.000 35.36 9.43 44.23 2.10
5 6 1.443407 GAGAATGCCGGCAGCTAGA 59.557 57.895 35.36 10.32 44.23 2.43
6 7 1.596477 GGAGAATGCCGGCAGCTAG 60.596 63.158 35.36 0.00 44.23 3.42
7 8 2.505982 GGAGAATGCCGGCAGCTA 59.494 61.111 35.36 11.67 44.23 3.32
8 9 4.496336 GGGAGAATGCCGGCAGCT 62.496 66.667 35.36 31.54 44.23 4.24
16 17 0.391661 TGCACGAAGAGGGAGAATGC 60.392 55.000 0.00 0.00 0.00 3.56
17 18 2.099141 TTGCACGAAGAGGGAGAATG 57.901 50.000 0.00 0.00 0.00 2.67
18 19 2.427506 GTTTGCACGAAGAGGGAGAAT 58.572 47.619 0.00 0.00 0.00 2.40
19 20 1.542547 GGTTTGCACGAAGAGGGAGAA 60.543 52.381 0.00 0.00 0.00 2.87
20 21 0.034896 GGTTTGCACGAAGAGGGAGA 59.965 55.000 0.00 0.00 0.00 3.71
21 22 0.035458 AGGTTTGCACGAAGAGGGAG 59.965 55.000 0.00 0.00 0.00 4.30
22 23 0.472471 AAGGTTTGCACGAAGAGGGA 59.528 50.000 0.00 0.00 0.00 4.20
23 24 0.593128 CAAGGTTTGCACGAAGAGGG 59.407 55.000 0.00 0.00 0.00 4.30
24 25 1.308998 ACAAGGTTTGCACGAAGAGG 58.691 50.000 0.00 0.00 0.00 3.69
25 26 4.545823 TTTACAAGGTTTGCACGAAGAG 57.454 40.909 0.00 0.00 0.00 2.85
26 27 4.966965 TTTTACAAGGTTTGCACGAAGA 57.033 36.364 0.00 0.00 0.00 2.87
27 28 7.136119 TCTTATTTTACAAGGTTTGCACGAAG 58.864 34.615 0.00 0.00 0.00 3.79
28 29 7.012515 TCTCTTATTTTACAAGGTTTGCACGAA 59.987 33.333 0.00 0.00 0.00 3.85
29 30 6.483974 TCTCTTATTTTACAAGGTTTGCACGA 59.516 34.615 0.00 0.00 0.00 4.35
30 31 6.664515 TCTCTTATTTTACAAGGTTTGCACG 58.335 36.000 0.00 0.00 0.00 5.34
31 32 7.871853 TCTCTCTTATTTTACAAGGTTTGCAC 58.128 34.615 0.00 0.00 0.00 4.57
32 33 8.458573 TTCTCTCTTATTTTACAAGGTTTGCA 57.541 30.769 0.00 0.00 0.00 4.08
37 38 9.905713 TGCATATTCTCTCTTATTTTACAAGGT 57.094 29.630 0.00 0.00 0.00 3.50
50 51 9.703892 GTCACAATACTTATGCATATTCTCTCT 57.296 33.333 7.36 0.00 0.00 3.10
51 52 9.481340 TGTCACAATACTTATGCATATTCTCTC 57.519 33.333 7.36 0.00 0.00 3.20
58 59 9.260002 CACACTATGTCACAATACTTATGCATA 57.740 33.333 1.16 1.16 0.00 3.14
59 60 7.770433 ACACACTATGTCACAATACTTATGCAT 59.230 33.333 3.79 3.79 36.54 3.96
60 61 7.102993 ACACACTATGTCACAATACTTATGCA 58.897 34.615 0.00 0.00 36.54 3.96
61 62 7.539712 ACACACTATGTCACAATACTTATGC 57.460 36.000 0.00 0.00 36.54 3.14
68 69 9.093970 GCTGTTATTACACACTATGTCACAATA 57.906 33.333 0.00 0.00 42.09 1.90
69 70 7.065803 GGCTGTTATTACACACTATGTCACAAT 59.934 37.037 0.00 0.00 42.09 2.71
70 71 6.370442 GGCTGTTATTACACACTATGTCACAA 59.630 38.462 0.00 0.00 42.09 3.33
71 72 5.872617 GGCTGTTATTACACACTATGTCACA 59.127 40.000 0.00 0.00 42.09 3.58
72 73 5.293569 GGGCTGTTATTACACACTATGTCAC 59.706 44.000 0.00 0.00 42.09 3.67
73 74 5.046231 TGGGCTGTTATTACACACTATGTCA 60.046 40.000 0.00 0.00 42.09 3.58
74 75 5.424757 TGGGCTGTTATTACACACTATGTC 58.575 41.667 0.00 0.00 42.09 3.06
75 76 5.429681 TGGGCTGTTATTACACACTATGT 57.570 39.130 0.00 0.00 46.06 2.29
76 77 8.621532 ATTATGGGCTGTTATTACACACTATG 57.378 34.615 0.00 0.00 0.00 2.23
77 78 9.720769 GTATTATGGGCTGTTATTACACACTAT 57.279 33.333 0.00 0.00 0.00 2.12
78 79 8.706521 TGTATTATGGGCTGTTATTACACACTA 58.293 33.333 0.00 0.00 0.00 2.74
79 80 7.570132 TGTATTATGGGCTGTTATTACACACT 58.430 34.615 0.00 0.00 0.00 3.55
80 81 7.795482 TGTATTATGGGCTGTTATTACACAC 57.205 36.000 0.00 0.00 0.00 3.82
81 82 8.988546 ATTGTATTATGGGCTGTTATTACACA 57.011 30.769 0.00 0.00 0.00 3.72
89 90 9.733556 TCGATATTTATTGTATTATGGGCTGTT 57.266 29.630 0.00 0.00 0.00 3.16
90 91 9.905713 ATCGATATTTATTGTATTATGGGCTGT 57.094 29.630 0.00 0.00 0.00 4.40
111 112 9.135843 CATTTTGCATCATGCTTTTATATCGAT 57.864 29.630 11.84 2.16 45.31 3.59
112 113 8.136800 ACATTTTGCATCATGCTTTTATATCGA 58.863 29.630 11.84 0.00 45.31 3.59
113 114 8.289440 ACATTTTGCATCATGCTTTTATATCG 57.711 30.769 11.84 0.00 45.31 2.92
115 116 9.184062 CGTACATTTTGCATCATGCTTTTATAT 57.816 29.630 11.84 0.00 45.31 0.86
116 117 8.187480 ACGTACATTTTGCATCATGCTTTTATA 58.813 29.630 11.84 0.00 45.31 0.98
117 118 7.035004 ACGTACATTTTGCATCATGCTTTTAT 58.965 30.769 11.84 0.00 45.31 1.40
118 119 6.385843 ACGTACATTTTGCATCATGCTTTTA 58.614 32.000 11.84 0.00 45.31 1.52
119 120 5.229423 ACGTACATTTTGCATCATGCTTTT 58.771 33.333 11.84 0.00 45.31 2.27
120 121 4.808558 ACGTACATTTTGCATCATGCTTT 58.191 34.783 11.84 0.00 45.31 3.51
121 122 4.439305 ACGTACATTTTGCATCATGCTT 57.561 36.364 11.84 0.00 45.31 3.91
122 123 5.296531 TGATACGTACATTTTGCATCATGCT 59.703 36.000 11.84 0.00 45.31 3.79
123 124 5.509771 TGATACGTACATTTTGCATCATGC 58.490 37.500 1.35 1.35 45.29 4.06
124 125 7.188834 AGTTGATACGTACATTTTGCATCATG 58.811 34.615 0.00 4.45 0.00 3.07
125 126 7.320443 AGTTGATACGTACATTTTGCATCAT 57.680 32.000 0.00 0.00 0.00 2.45
126 127 6.183360 GGAGTTGATACGTACATTTTGCATCA 60.183 38.462 0.00 0.00 0.00 3.07
127 128 6.192360 GGAGTTGATACGTACATTTTGCATC 58.808 40.000 0.00 0.00 0.00 3.91
128 129 5.065988 GGGAGTTGATACGTACATTTTGCAT 59.934 40.000 0.00 0.00 0.00 3.96
129 130 4.393680 GGGAGTTGATACGTACATTTTGCA 59.606 41.667 0.00 0.00 0.00 4.08
130 131 4.201881 GGGGAGTTGATACGTACATTTTGC 60.202 45.833 0.00 0.00 0.00 3.68
131 132 4.334481 GGGGGAGTTGATACGTACATTTTG 59.666 45.833 0.00 0.00 0.00 2.44
132 133 4.019141 TGGGGGAGTTGATACGTACATTTT 60.019 41.667 0.00 0.00 0.00 1.82
133 134 3.520317 TGGGGGAGTTGATACGTACATTT 59.480 43.478 0.00 0.00 0.00 2.32
134 135 3.109151 TGGGGGAGTTGATACGTACATT 58.891 45.455 0.00 0.00 0.00 2.71
135 136 2.754465 TGGGGGAGTTGATACGTACAT 58.246 47.619 0.00 0.00 0.00 2.29
136 137 2.234896 TGGGGGAGTTGATACGTACA 57.765 50.000 0.00 0.00 0.00 2.90
137 138 2.498885 ACTTGGGGGAGTTGATACGTAC 59.501 50.000 0.00 0.00 0.00 3.67
138 139 2.823959 ACTTGGGGGAGTTGATACGTA 58.176 47.619 0.00 0.00 0.00 3.57
139 140 1.652947 ACTTGGGGGAGTTGATACGT 58.347 50.000 0.00 0.00 0.00 3.57
140 141 2.781681 AACTTGGGGGAGTTGATACG 57.218 50.000 0.00 0.00 38.39 3.06
141 142 5.183969 GTCTAAACTTGGGGGAGTTGATAC 58.816 45.833 0.00 0.00 39.68 2.24
142 143 4.226620 GGTCTAAACTTGGGGGAGTTGATA 59.773 45.833 0.00 0.00 39.68 2.15
143 144 3.010250 GGTCTAAACTTGGGGGAGTTGAT 59.990 47.826 0.00 0.00 39.68 2.57
144 145 2.374170 GGTCTAAACTTGGGGGAGTTGA 59.626 50.000 0.00 0.00 39.68 3.18
145 146 2.375509 AGGTCTAAACTTGGGGGAGTTG 59.624 50.000 0.00 0.00 39.68 3.16
146 147 2.643304 GAGGTCTAAACTTGGGGGAGTT 59.357 50.000 0.00 0.00 41.44 3.01
147 148 2.267192 GAGGTCTAAACTTGGGGGAGT 58.733 52.381 0.00 0.00 0.00 3.85
148 149 1.207329 CGAGGTCTAAACTTGGGGGAG 59.793 57.143 0.00 0.00 0.00 4.30
149 150 1.272807 CGAGGTCTAAACTTGGGGGA 58.727 55.000 0.00 0.00 0.00 4.81
150 151 0.392595 GCGAGGTCTAAACTTGGGGG 60.393 60.000 0.00 0.00 0.00 5.40
151 152 0.613777 AGCGAGGTCTAAACTTGGGG 59.386 55.000 0.00 0.00 0.00 4.96
152 153 2.076863 CAAGCGAGGTCTAAACTTGGG 58.923 52.381 0.00 0.00 35.26 4.12
153 154 2.737252 GACAAGCGAGGTCTAAACTTGG 59.263 50.000 0.00 0.00 41.54 3.61
154 155 2.737252 GGACAAGCGAGGTCTAAACTTG 59.263 50.000 0.00 0.00 42.63 3.16
155 156 2.633481 AGGACAAGCGAGGTCTAAACTT 59.367 45.455 5.63 0.00 35.61 2.66
156 157 2.231721 GAGGACAAGCGAGGTCTAAACT 59.768 50.000 5.63 0.00 35.61 2.66
157 158 2.029290 TGAGGACAAGCGAGGTCTAAAC 60.029 50.000 5.63 0.00 35.61 2.01
158 159 2.244695 TGAGGACAAGCGAGGTCTAAA 58.755 47.619 5.63 0.00 35.61 1.85
159 160 1.919240 TGAGGACAAGCGAGGTCTAA 58.081 50.000 5.63 0.00 35.61 2.10
160 161 1.819288 CTTGAGGACAAGCGAGGTCTA 59.181 52.381 0.00 0.00 45.19 2.59
161 162 0.605589 CTTGAGGACAAGCGAGGTCT 59.394 55.000 0.00 0.00 45.19 3.85
162 163 3.129792 CTTGAGGACAAGCGAGGTC 57.870 57.895 0.00 0.00 45.19 3.85
170 171 0.250295 CGGCTTCCACTTGAGGACAA 60.250 55.000 0.00 0.00 37.42 3.18
171 172 1.118965 TCGGCTTCCACTTGAGGACA 61.119 55.000 0.00 0.00 37.42 4.02
172 173 0.250513 ATCGGCTTCCACTTGAGGAC 59.749 55.000 0.00 0.00 37.42 3.85
173 174 1.860641 TATCGGCTTCCACTTGAGGA 58.139 50.000 0.00 0.00 35.41 3.71
174 175 2.280628 GTTATCGGCTTCCACTTGAGG 58.719 52.381 0.00 0.00 0.00 3.86
175 176 1.927174 CGTTATCGGCTTCCACTTGAG 59.073 52.381 0.00 0.00 0.00 3.02
176 177 1.546923 TCGTTATCGGCTTCCACTTGA 59.453 47.619 0.00 0.00 37.69 3.02
177 178 2.004583 TCGTTATCGGCTTCCACTTG 57.995 50.000 0.00 0.00 37.69 3.16
178 179 2.754946 TTCGTTATCGGCTTCCACTT 57.245 45.000 0.00 0.00 37.69 3.16
179 180 2.754946 TTTCGTTATCGGCTTCCACT 57.245 45.000 0.00 0.00 37.69 4.00
180 181 3.817148 TTTTTCGTTATCGGCTTCCAC 57.183 42.857 0.00 0.00 37.69 4.02
181 182 5.587043 ACATATTTTTCGTTATCGGCTTCCA 59.413 36.000 0.00 0.00 37.69 3.53
182 183 6.056428 ACATATTTTTCGTTATCGGCTTCC 57.944 37.500 0.00 0.00 37.69 3.46
183 184 6.134061 GGACATATTTTTCGTTATCGGCTTC 58.866 40.000 0.00 0.00 37.69 3.86
184 185 5.587043 TGGACATATTTTTCGTTATCGGCTT 59.413 36.000 0.00 0.00 37.69 4.35
185 186 5.007332 GTGGACATATTTTTCGTTATCGGCT 59.993 40.000 0.00 0.00 37.69 5.52
186 187 5.202640 GTGGACATATTTTTCGTTATCGGC 58.797 41.667 0.00 0.00 37.69 5.54
187 188 6.352682 TGTGGACATATTTTTCGTTATCGG 57.647 37.500 0.00 0.00 37.69 4.18
188 189 7.406553 ACATGTGGACATATTTTTCGTTATCG 58.593 34.615 0.00 0.00 34.26 2.92
189 190 9.567848 AAACATGTGGACATATTTTTCGTTATC 57.432 29.630 0.00 0.00 29.50 1.75
192 193 8.788806 TCTAAACATGTGGACATATTTTTCGTT 58.211 29.630 0.00 0.00 35.01 3.85
193 194 8.330466 TCTAAACATGTGGACATATTTTTCGT 57.670 30.769 0.00 0.00 35.01 3.85
201 202 9.601810 ACCTCTATATCTAAACATGTGGACATA 57.398 33.333 0.00 0.00 34.26 2.29
202 203 8.497910 ACCTCTATATCTAAACATGTGGACAT 57.502 34.615 0.00 0.00 36.96 3.06
203 204 7.914427 ACCTCTATATCTAAACATGTGGACA 57.086 36.000 0.00 0.00 0.00 4.02
205 206 9.822727 TGATACCTCTATATCTAAACATGTGGA 57.177 33.333 0.00 0.00 33.42 4.02
229 230 9.062524 CCCTCATGTCCGTATTTTATTTATTGA 57.937 33.333 0.00 0.00 0.00 2.57
230 231 7.807907 GCCCTCATGTCCGTATTTTATTTATTG 59.192 37.037 0.00 0.00 0.00 1.90
231 232 7.504238 TGCCCTCATGTCCGTATTTTATTTATT 59.496 33.333 0.00 0.00 0.00 1.40
232 233 7.001674 TGCCCTCATGTCCGTATTTTATTTAT 58.998 34.615 0.00 0.00 0.00 1.40
233 234 6.358178 TGCCCTCATGTCCGTATTTTATTTA 58.642 36.000 0.00 0.00 0.00 1.40
234 235 5.197451 TGCCCTCATGTCCGTATTTTATTT 58.803 37.500 0.00 0.00 0.00 1.40
235 236 4.787551 TGCCCTCATGTCCGTATTTTATT 58.212 39.130 0.00 0.00 0.00 1.40
236 237 4.431416 TGCCCTCATGTCCGTATTTTAT 57.569 40.909 0.00 0.00 0.00 1.40
237 238 3.916359 TGCCCTCATGTCCGTATTTTA 57.084 42.857 0.00 0.00 0.00 1.52
238 239 2.799126 TGCCCTCATGTCCGTATTTT 57.201 45.000 0.00 0.00 0.00 1.82
239 240 2.172505 TGATGCCCTCATGTCCGTATTT 59.827 45.455 0.00 0.00 31.96 1.40
240 241 1.768275 TGATGCCCTCATGTCCGTATT 59.232 47.619 0.00 0.00 31.96 1.89
241 242 1.423584 TGATGCCCTCATGTCCGTAT 58.576 50.000 0.00 0.00 31.96 3.06
242 243 1.423584 ATGATGCCCTCATGTCCGTA 58.576 50.000 0.00 0.00 43.15 4.02
243 244 2.224821 ATGATGCCCTCATGTCCGT 58.775 52.632 0.00 0.00 43.15 4.69
249 250 7.008332 TCTAAAAATGATCATGATGCCCTCAT 58.992 34.615 14.30 7.95 45.78 2.90
250 251 6.367161 TCTAAAAATGATCATGATGCCCTCA 58.633 36.000 14.30 5.60 38.53 3.86
251 252 6.889301 TCTAAAAATGATCATGATGCCCTC 57.111 37.500 14.30 0.00 0.00 4.30
252 253 6.608405 TGTTCTAAAAATGATCATGATGCCCT 59.392 34.615 14.30 0.00 0.00 5.19
253 254 6.808829 TGTTCTAAAAATGATCATGATGCCC 58.191 36.000 14.30 0.00 0.00 5.36
254 255 7.760794 TGTTGTTCTAAAAATGATCATGATGCC 59.239 33.333 14.30 0.00 0.00 4.40
255 256 8.692110 TGTTGTTCTAAAAATGATCATGATGC 57.308 30.769 14.30 5.60 0.00 3.91
268 269 9.645059 TGTGATTCAAATGTTGTTGTTCTAAAA 57.355 25.926 0.00 0.00 0.00 1.52
269 270 9.814899 ATGTGATTCAAATGTTGTTGTTCTAAA 57.185 25.926 0.00 0.00 0.00 1.85
272 273 7.596248 GCTATGTGATTCAAATGTTGTTGTTCT 59.404 33.333 0.00 0.00 0.00 3.01
273 274 7.409661 CGCTATGTGATTCAAATGTTGTTGTTC 60.410 37.037 0.00 0.00 0.00 3.18
274 275 6.363088 CGCTATGTGATTCAAATGTTGTTGTT 59.637 34.615 0.00 0.00 0.00 2.83
275 276 5.858049 CGCTATGTGATTCAAATGTTGTTGT 59.142 36.000 0.00 0.00 0.00 3.32
276 277 5.858049 ACGCTATGTGATTCAAATGTTGTTG 59.142 36.000 0.00 0.00 0.00 3.33
277 278 6.012658 ACGCTATGTGATTCAAATGTTGTT 57.987 33.333 0.00 0.00 0.00 2.83
278 279 5.627499 ACGCTATGTGATTCAAATGTTGT 57.373 34.783 0.00 0.00 0.00 3.32
279 280 9.882996 ATATAACGCTATGTGATTCAAATGTTG 57.117 29.630 0.00 0.00 0.00 3.33
290 291 8.996271 CGTCCCTATATATATAACGCTATGTGA 58.004 37.037 10.82 0.00 0.00 3.58
291 292 8.996271 TCGTCCCTATATATATAACGCTATGTG 58.004 37.037 15.81 0.00 0.00 3.21
292 293 9.736414 ATCGTCCCTATATATATAACGCTATGT 57.264 33.333 15.81 0.00 0.00 2.29
294 295 9.955102 TGATCGTCCCTATATATATAACGCTAT 57.045 33.333 15.81 8.79 0.00 2.97
295 296 9.783081 TTGATCGTCCCTATATATATAACGCTA 57.217 33.333 15.81 5.49 0.00 4.26
296 297 8.687292 TTGATCGTCCCTATATATATAACGCT 57.313 34.615 15.81 9.68 0.00 5.07
297 298 9.909644 ATTTGATCGTCCCTATATATATAACGC 57.090 33.333 15.81 7.73 0.00 4.84
304 305 9.871238 GTGTAACATTTGATCGTCCCTATATAT 57.129 33.333 0.00 0.00 36.32 0.86
305 306 8.862085 TGTGTAACATTTGATCGTCCCTATATA 58.138 33.333 0.00 0.00 45.67 0.86
306 307 7.732025 TGTGTAACATTTGATCGTCCCTATAT 58.268 34.615 0.00 0.00 45.67 0.86
307 308 7.114866 TGTGTAACATTTGATCGTCCCTATA 57.885 36.000 0.00 0.00 45.67 1.31
308 309 5.984725 TGTGTAACATTTGATCGTCCCTAT 58.015 37.500 0.00 0.00 45.67 2.57
309 310 5.408880 TGTGTAACATTTGATCGTCCCTA 57.591 39.130 0.00 0.00 45.67 3.53
310 311 4.280436 TGTGTAACATTTGATCGTCCCT 57.720 40.909 0.00 0.00 45.67 4.20
324 325 0.390735 ATCCGGTCGCCTTGTGTAAC 60.391 55.000 0.00 0.00 37.35 2.50
325 326 0.322322 AATCCGGTCGCCTTGTGTAA 59.678 50.000 0.00 0.00 0.00 2.41
326 327 1.135527 CTAATCCGGTCGCCTTGTGTA 59.864 52.381 0.00 0.00 0.00 2.90
327 328 0.108329 CTAATCCGGTCGCCTTGTGT 60.108 55.000 0.00 0.00 0.00 3.72
328 329 0.174845 TCTAATCCGGTCGCCTTGTG 59.825 55.000 0.00 0.00 0.00 3.33
329 330 0.899720 TTCTAATCCGGTCGCCTTGT 59.100 50.000 0.00 0.00 0.00 3.16
330 331 2.240493 ATTCTAATCCGGTCGCCTTG 57.760 50.000 0.00 0.00 0.00 3.61
331 332 3.387050 AGTTATTCTAATCCGGTCGCCTT 59.613 43.478 0.00 0.00 0.00 4.35
332 333 2.963782 AGTTATTCTAATCCGGTCGCCT 59.036 45.455 0.00 0.00 0.00 5.52
333 334 3.382048 AGTTATTCTAATCCGGTCGCC 57.618 47.619 0.00 0.00 0.00 5.54
334 335 6.643770 TCAAATAGTTATTCTAATCCGGTCGC 59.356 38.462 0.00 0.00 31.94 5.19
335 336 8.583810 TTCAAATAGTTATTCTAATCCGGTCG 57.416 34.615 0.00 0.00 31.94 4.79
359 360 7.093465 CCCCTGTATATATAACACTCCGTGATT 60.093 40.741 0.38 0.00 36.96 2.57
367 368 5.955959 TGATCGCCCCTGTATATATAACACT 59.044 40.000 0.00 0.00 0.00 3.55
369 370 6.860790 TTGATCGCCCCTGTATATATAACA 57.139 37.500 0.00 0.00 0.00 2.41
380 381 0.740737 GGAACATTTGATCGCCCCTG 59.259 55.000 0.00 0.00 0.00 4.45
391 392 1.632589 GGCTGGGTTCAGGAACATTT 58.367 50.000 13.62 0.00 42.85 2.32
392 393 0.609131 CGGCTGGGTTCAGGAACATT 60.609 55.000 13.62 0.00 42.85 2.71
537 538 2.438434 GGTGGAAGCATGGGGACG 60.438 66.667 0.00 0.00 0.00 4.79
621 622 4.176752 GGGTAAGGGAGCCCAGCG 62.177 72.222 8.53 0.00 44.23 5.18
664 665 1.693103 GGGGTGGAAGTAGGGGGAG 60.693 68.421 0.00 0.00 0.00 4.30
665 666 2.457794 GGGGTGGAAGTAGGGGGA 59.542 66.667 0.00 0.00 0.00 4.81
666 667 3.087906 CGGGGTGGAAGTAGGGGG 61.088 72.222 0.00 0.00 0.00 5.40
693 789 1.464198 AGTGGAAGCAGGGGAGGTT 60.464 57.895 0.00 0.00 0.00 3.50
702 798 2.285368 ATCCCCGGAGTGGAAGCA 60.285 61.111 0.73 0.00 42.00 3.91
703 799 2.190578 CATCCCCGGAGTGGAAGC 59.809 66.667 0.73 0.00 42.00 3.86
745 843 3.631046 GCATAGAGGAGGGGCGGG 61.631 72.222 0.00 0.00 0.00 6.13
748 846 4.321966 GGCGCATAGAGGAGGGGC 62.322 72.222 10.83 0.00 46.22 5.80
759 857 2.687418 GATGGTGGAGGATGGCGCAT 62.687 60.000 10.83 0.00 0.00 4.73
777 875 1.529438 GATCTGTTTTGGCAACGACGA 59.471 47.619 0.00 4.93 42.51 4.20
783 881 1.531739 GGCGGGATCTGTTTTGGCAA 61.532 55.000 0.00 0.00 0.00 4.52
821 923 1.862008 GCCTCACGACAGATCATCGAC 60.862 57.143 21.92 6.10 42.25 4.20
826 928 1.607801 CTGGGCCTCACGACAGATCA 61.608 60.000 4.53 0.00 32.86 2.92
858 960 4.984689 GGCTAGCTAGGCGCGTCG 62.985 72.222 29.08 0.31 45.59 5.12
890 992 2.284921 TGGTGAGGGAGGGCAGAG 60.285 66.667 0.00 0.00 0.00 3.35
1078 1181 1.000019 ATGCAGAGCAAGGGCACAT 60.000 52.632 0.00 0.00 43.62 3.21
1100 1203 4.878397 ACAGATGTGCAATTTCTAGCCTAC 59.122 41.667 0.00 0.00 0.00 3.18
1109 1212 5.048083 ACGTCCAAATACAGATGTGCAATTT 60.048 36.000 0.00 0.00 31.09 1.82
1120 1223 5.119279 CACTTTCTCTGACGTCCAAATACAG 59.881 44.000 14.12 2.19 0.00 2.74
1158 1262 6.823689 ACGGATAGCATGTAGTTTCAGAATTT 59.176 34.615 0.00 0.00 0.00 1.82
1220 1324 1.206371 GAGGCGTACATGGGTTACAGT 59.794 52.381 0.00 0.00 0.00 3.55
1275 1379 3.201707 ATGGAGGCGATGGGGATGC 62.202 63.158 0.00 0.00 0.00 3.91
1349 1453 1.066143 CATCCAACTGTAGGCCGAGTT 60.066 52.381 10.96 10.96 32.48 3.01
1359 1463 1.228552 GGGTGTGCCATCCAACTGT 60.229 57.895 0.05 0.00 34.21 3.55
1379 1483 4.803426 GTGGCTCTCCGTCGCTGG 62.803 72.222 0.00 0.00 34.14 4.85
1413 1517 3.148279 AGACGACTCGGGGATGGC 61.148 66.667 2.98 0.00 0.00 4.40
1435 1540 0.755686 ATCCAAAGCTAGGGCGAGAG 59.244 55.000 5.38 0.00 44.37 3.20
1443 1548 1.863267 CTCGCTGGATCCAAAGCTAG 58.137 55.000 17.00 13.79 37.27 3.42
1447 1552 1.372087 GGTGCTCGCTGGATCCAAAG 61.372 60.000 17.00 14.09 0.00 2.77
1482 1587 2.890474 GGTACGTGGCCTGCATCG 60.890 66.667 3.32 3.84 0.00 3.84
1491 1596 0.464452 GATTGGGGAGAGGTACGTGG 59.536 60.000 0.00 0.00 0.00 4.94
1497 1602 0.252881 TGCAGAGATTGGGGAGAGGT 60.253 55.000 0.00 0.00 0.00 3.85
1505 1610 1.396301 GCTTCTCGTTGCAGAGATTGG 59.604 52.381 6.50 2.78 45.55 3.16
1537 1642 3.492311 GATCCAGGAGCTCGCCGTC 62.492 68.421 7.83 0.00 0.00 4.79
1540 1645 2.841988 AGGATCCAGGAGCTCGCC 60.842 66.667 15.82 0.00 0.00 5.54
1559 1664 0.460987 GTTGGGGACAGCGAGATCAG 60.461 60.000 0.00 0.00 44.54 2.90
1613 1718 1.450211 CCACAGGGTGTCGGAAACT 59.550 57.895 0.00 0.00 0.00 2.66
1627 1732 1.942677 CTGACGGTAACAACACCACA 58.057 50.000 0.00 0.00 38.61 4.17
1636 1741 0.893447 AGGGTGTAGCTGACGGTAAC 59.107 55.000 0.00 0.00 0.00 2.50
1639 1744 1.533273 ACAGGGTGTAGCTGACGGT 60.533 57.895 0.00 0.00 0.00 4.83
1652 1757 7.897864 TGTAATTTAAACCAAATACCACAGGG 58.102 34.615 0.00 0.00 35.74 4.45
1653 1758 8.032451 CCTGTAATTTAAACCAAATACCACAGG 58.968 37.037 15.90 15.90 44.45 4.00
1654 1759 8.798402 TCCTGTAATTTAAACCAAATACCACAG 58.202 33.333 0.00 0.00 38.81 3.66
1655 1760 8.707796 TCCTGTAATTTAAACCAAATACCACA 57.292 30.769 0.00 0.00 35.74 4.17
1747 1858 4.261867 CCATAATGAATCCACACCATGCTG 60.262 45.833 0.00 0.00 0.00 4.41
1805 1916 7.220030 GTGTCATGAAGATAATACATGGGACT 58.780 38.462 0.00 0.00 40.86 3.85
1869 1980 3.717576 TCACAATATGAATTTGGGCCCA 58.282 40.909 24.45 24.45 33.02 5.36
1948 2260 4.061596 AGCTTAATAAATCTCTCGCAGCC 58.938 43.478 0.00 0.00 0.00 4.85
2063 2376 1.134401 TCGTCAGGATTTGGCTCATCC 60.134 52.381 7.28 7.28 40.72 3.51
2161 2474 5.367945 ACTAGGAAAGGTCTGAACACAAA 57.632 39.130 0.00 0.00 0.00 2.83
2211 2524 1.458045 TGCAACACCCCTGCATACA 59.542 52.632 0.00 0.00 44.67 2.29
2245 2559 4.202020 CCGACCAGACTCTTCATCGAATAA 60.202 45.833 0.00 0.00 0.00 1.40
2429 2757 5.057819 TGAAACTACAAAATGCGACCTACA 58.942 37.500 0.00 0.00 0.00 2.74
2435 2763 5.000591 TGGAGATGAAACTACAAAATGCGA 58.999 37.500 0.00 0.00 0.00 5.10
2540 2869 5.705441 TCGGCACAAGATCTAATTCAAAAGT 59.295 36.000 0.00 0.00 0.00 2.66
2655 2996 4.460382 ACCTAAATGTAGTCCTTCGTCGAA 59.540 41.667 7.57 7.57 0.00 3.71
2758 3099 1.523758 CACTTTTGCTAGGCGGTCTT 58.476 50.000 0.00 0.00 0.00 3.01
2759 3100 0.321653 CCACTTTTGCTAGGCGGTCT 60.322 55.000 0.00 0.00 0.00 3.85
2760 3101 1.923227 GCCACTTTTGCTAGGCGGTC 61.923 60.000 0.00 0.00 37.41 4.79
2761 3102 1.971695 GCCACTTTTGCTAGGCGGT 60.972 57.895 0.00 0.00 37.41 5.68
2762 3103 2.877691 GCCACTTTTGCTAGGCGG 59.122 61.111 0.00 0.00 37.41 6.13
2832 3174 5.084818 TGGCGAAGATGAAGAAGACAATA 57.915 39.130 0.00 0.00 0.00 1.90
2859 3201 3.923864 AGCGGCCAAGTCACGACA 61.924 61.111 2.24 0.00 0.00 4.35
2874 3216 2.353839 CAGCGCACCAACAACAGC 60.354 61.111 11.47 0.00 0.00 4.40
2914 3256 6.830912 TGTCTCAGAAATCTTTTTCCTCTCA 58.169 36.000 0.00 0.00 41.86 3.27
3144 3487 0.326927 CCTAGGCGGTCCCTTTTTCA 59.673 55.000 0.00 0.00 43.06 2.69
3358 3712 6.591935 AGTTGGAGTTCTGTTAGAAACATCA 58.408 36.000 0.00 0.00 41.26 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.