Multiple sequence alignment - TraesCS2A01G310000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G310000 chr2A 100.000 3425 0 0 1 3425 533535530 533538954 0.000000e+00 6325
1 TraesCS2A01G310000 chr2A 93.635 707 39 5 1 705 632406988 632406286 0.000000e+00 1051
2 TraesCS2A01G310000 chr2A 93.059 706 47 2 1 705 48466695 48465991 0.000000e+00 1031
3 TraesCS2A01G310000 chr2A 100.000 469 0 0 3790 4258 533539319 533539787 0.000000e+00 867
4 TraesCS2A01G310000 chr2B 95.938 2659 95 5 767 3425 468443989 468446634 0.000000e+00 4300
5 TraesCS2A01G310000 chr2B 92.842 475 26 4 3790 4258 468446901 468447373 0.000000e+00 682
6 TraesCS2A01G310000 chr2D 96.768 2537 73 5 890 3425 395277998 395280526 0.000000e+00 4222
7 TraesCS2A01G310000 chr2D 92.157 459 23 6 3811 4258 395280949 395281405 1.670000e-178 636
8 TraesCS2A01G310000 chr2D 84.516 155 2 6 743 897 395265407 395265539 2.670000e-27 134
9 TraesCS2A01G310000 chr5A 94.193 706 39 2 1 705 675643036 675642332 0.000000e+00 1075
10 TraesCS2A01G310000 chr6A 93.287 715 46 2 1 715 579394891 579394179 0.000000e+00 1053
11 TraesCS2A01G310000 chr6A 92.847 713 43 7 1 710 552939504 552938797 0.000000e+00 1027
12 TraesCS2A01G310000 chr1A 93.626 706 42 3 1 705 48781779 48782482 0.000000e+00 1051
13 TraesCS2A01G310000 chr1A 81.797 423 62 10 3796 4207 421035359 421034941 1.470000e-89 340
14 TraesCS2A01G310000 chr5B 93.059 706 47 2 1 705 587111083 587110379 0.000000e+00 1031
15 TraesCS2A01G310000 chr7A 92.490 719 49 5 1 716 148510114 148509398 0.000000e+00 1024
16 TraesCS2A01G310000 chr4A 92.918 706 47 3 1 705 72002927 72002224 0.000000e+00 1024


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G310000 chr2A 533535530 533539787 4257 False 3596 6325 100.0000 1 4258 2 chr2A.!!$F1 4257
1 TraesCS2A01G310000 chr2A 632406286 632406988 702 True 1051 1051 93.6350 1 705 1 chr2A.!!$R2 704
2 TraesCS2A01G310000 chr2A 48465991 48466695 704 True 1031 1031 93.0590 1 705 1 chr2A.!!$R1 704
3 TraesCS2A01G310000 chr2B 468443989 468447373 3384 False 2491 4300 94.3900 767 4258 2 chr2B.!!$F1 3491
4 TraesCS2A01G310000 chr2D 395277998 395281405 3407 False 2429 4222 94.4625 890 4258 2 chr2D.!!$F2 3368
5 TraesCS2A01G310000 chr5A 675642332 675643036 704 True 1075 1075 94.1930 1 705 1 chr5A.!!$R1 704
6 TraesCS2A01G310000 chr6A 579394179 579394891 712 True 1053 1053 93.2870 1 715 1 chr6A.!!$R2 714
7 TraesCS2A01G310000 chr6A 552938797 552939504 707 True 1027 1027 92.8470 1 710 1 chr6A.!!$R1 709
8 TraesCS2A01G310000 chr1A 48781779 48782482 703 False 1051 1051 93.6260 1 705 1 chr1A.!!$F1 704
9 TraesCS2A01G310000 chr5B 587110379 587111083 704 True 1031 1031 93.0590 1 705 1 chr5B.!!$R1 704
10 TraesCS2A01G310000 chr7A 148509398 148510114 716 True 1024 1024 92.4900 1 716 1 chr7A.!!$R1 715
11 TraesCS2A01G310000 chr4A 72002224 72002927 703 True 1024 1024 92.9180 1 705 1 chr4A.!!$R1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 977 0.320946 TTCTGGAGTTTTACGGCGGG 60.321 55.0 13.24 0.00 0.00 6.13 F
1121 1129 0.689745 TACATAGGGCAGCGGTTCCT 60.690 55.0 2.72 7.34 34.85 3.36 F
2444 2452 0.466189 CGCCCAAACATGCCTATCCT 60.466 55.0 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2407 2415 1.075542 CGCTCAACAACCGCTGAATA 58.924 50.000 0.00 0.0 0.00 1.75 R
2989 2998 1.344763 GGTAATGGTCCGGGATCTGAG 59.655 57.143 9.08 0.0 0.00 3.35 R
4076 4133 0.035458 AACACACAGAGCTGGCTACC 59.965 55.000 0.00 0.0 34.19 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 4.198530 CCTTTGTTGGCAAAAGGTCAAAT 58.801 39.130 18.53 0.00 43.97 2.32
135 136 2.696759 AAATACCTTGCGGCCGTGC 61.697 57.895 28.70 11.88 0.00 5.34
154 155 2.812499 GGCGAAGAGGCCGTGATA 59.188 61.111 0.00 0.00 44.40 2.15
330 331 1.202557 ACCAAAACTACGACGGAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
585 592 2.164279 TTTGGGTCGGGGATGGGTT 61.164 57.895 0.00 0.00 0.00 4.11
648 655 1.290955 CTGGGCCGTCTCGTTTGTA 59.709 57.895 0.00 0.00 0.00 2.41
669 676 3.834938 ACCTTTTACCCCAAATGAACGA 58.165 40.909 0.00 0.00 0.00 3.85
715 722 3.599412 GAGTTGGCGTTACTCCACA 57.401 52.632 0.00 0.00 36.79 4.17
716 723 1.145803 GAGTTGGCGTTACTCCACAC 58.854 55.000 0.00 0.00 36.79 3.82
717 724 0.466543 AGTTGGCGTTACTCCACACA 59.533 50.000 0.00 0.00 32.45 3.72
718 725 0.865769 GTTGGCGTTACTCCACACAG 59.134 55.000 0.00 0.00 32.45 3.66
719 726 0.466543 TTGGCGTTACTCCACACAGT 59.533 50.000 0.00 0.00 32.45 3.55
720 727 0.466543 TGGCGTTACTCCACACAGTT 59.533 50.000 0.00 0.00 0.00 3.16
721 728 1.145803 GGCGTTACTCCACACAGTTC 58.854 55.000 0.00 0.00 0.00 3.01
722 729 0.782384 GCGTTACTCCACACAGTTCG 59.218 55.000 0.00 0.00 0.00 3.95
723 730 0.782384 CGTTACTCCACACAGTTCGC 59.218 55.000 0.00 0.00 0.00 4.70
724 731 1.145803 GTTACTCCACACAGTTCGCC 58.854 55.000 0.00 0.00 0.00 5.54
725 732 1.045407 TTACTCCACACAGTTCGCCT 58.955 50.000 0.00 0.00 0.00 5.52
727 734 2.280797 TCCACACAGTTCGCCTGC 60.281 61.111 2.29 0.00 45.68 4.85
728 735 3.357079 CCACACAGTTCGCCTGCC 61.357 66.667 2.29 0.00 45.68 4.85
729 736 3.716006 CACACAGTTCGCCTGCCG 61.716 66.667 2.29 0.00 45.68 5.69
736 743 4.634703 TTCGCCTGCCGCCTCAAA 62.635 61.111 0.00 0.00 36.73 2.69
737 744 4.634703 TCGCCTGCCGCCTCAAAA 62.635 61.111 0.00 0.00 36.73 2.44
738 745 3.669344 CGCCTGCCGCCTCAAAAA 61.669 61.111 0.00 0.00 0.00 1.94
880 887 2.139917 CCACCGTCGTCATCTCAAAAA 58.860 47.619 0.00 0.00 0.00 1.94
902 909 5.922960 ATCTATGCCCCCTTTGTATTACA 57.077 39.130 0.00 0.00 0.00 2.41
970 977 0.320946 TTCTGGAGTTTTACGGCGGG 60.321 55.000 13.24 0.00 0.00 6.13
999 1007 4.722700 GCAGCGTGTGTCCCCCAT 62.723 66.667 0.00 0.00 0.00 4.00
1121 1129 0.689745 TACATAGGGCAGCGGTTCCT 60.690 55.000 2.72 7.34 34.85 3.36
1362 1370 1.070758 CTACGCATTGGTAGGGATGCT 59.929 52.381 6.73 0.00 44.90 3.79
1405 1413 2.169330 GAGTCACGGGGTTCTCTAACT 58.831 52.381 0.00 0.00 35.81 2.24
1516 1524 3.006752 GGTGTTTGCAAAATCTGGGATCA 59.993 43.478 14.67 1.11 0.00 2.92
1701 1709 5.590663 GGAGAAGGATCCCAATTTCAAGTAC 59.409 44.000 8.55 0.00 32.79 2.73
1892 1900 0.947244 CCTTGCTTCTTCAGTTGCGT 59.053 50.000 0.00 0.00 0.00 5.24
1990 1998 7.864379 CAGTACTCTTTACAACCGTTCTCTTAA 59.136 37.037 0.00 0.00 0.00 1.85
1991 1999 8.583296 AGTACTCTTTACAACCGTTCTCTTAAT 58.417 33.333 0.00 0.00 0.00 1.40
1992 2000 9.201127 GTACTCTTTACAACCGTTCTCTTAATT 57.799 33.333 0.00 0.00 0.00 1.40
2154 2162 3.026694 GGCTTATTGCATCCAGGTTTCT 58.973 45.455 0.00 0.00 45.15 2.52
2203 2211 7.283329 GGAGACACTATAATGACTGGGAAAAT 58.717 38.462 0.00 0.00 0.00 1.82
2209 2217 8.960591 CACTATAATGACTGGGAAAATGAGTTT 58.039 33.333 0.00 0.00 0.00 2.66
2245 2253 3.642848 ACATGGAAAGCACAATGGACTTT 59.357 39.130 0.00 3.01 36.37 2.66
2431 2439 3.283684 CGGTTGTTGAGCGCCCAA 61.284 61.111 2.29 0.00 42.83 4.12
2444 2452 0.466189 CGCCCAAACATGCCTATCCT 60.466 55.000 0.00 0.00 0.00 3.24
2686 2695 3.525800 AGCTGGGGAACAACAAATAGT 57.474 42.857 0.00 0.00 0.00 2.12
2714 2723 8.479280 CAACAAAACTCGGAAAATACAATTCTG 58.521 33.333 0.00 0.00 35.03 3.02
2801 2810 1.483827 CAGGATGAGCTTGTAGAGGCA 59.516 52.381 0.00 0.00 39.69 4.75
2907 2916 2.039879 TGGAACCAAAAGGAGGAGCTAC 59.960 50.000 0.00 0.00 0.00 3.58
2989 2998 3.121445 GTGCTCACAACGCTAAACTACTC 59.879 47.826 0.00 0.00 0.00 2.59
3101 3110 5.591472 CAGATCATATGAAAGGGTGAAAGCA 59.409 40.000 9.99 0.00 34.77 3.91
3128 3137 2.039084 GTCCATGGTCTCAGTTCTGGTT 59.961 50.000 12.58 0.00 0.00 3.67
3237 3246 1.811965 TGGCGAATGTTTCAGGTGATG 59.188 47.619 0.00 0.00 0.00 3.07
3286 3295 1.451449 TTGGTAGCTTTCCAAGGGGA 58.549 50.000 15.89 0.00 43.03 4.81
3367 3376 9.821662 GTTACTGAACTGTATGGTTTATTTGAC 57.178 33.333 0.00 0.00 32.40 3.18
3839 3887 0.246635 ATCAGTTTCGTCTGTCCCCG 59.753 55.000 0.00 0.00 36.85 5.73
3856 3904 4.423209 GGCCCAGGAGAGAGGGGT 62.423 72.222 0.00 0.00 45.58 4.95
3875 3923 0.840288 TGAGCTGCTAGTTGGGGGAA 60.840 55.000 0.15 0.00 0.00 3.97
3884 3932 2.735259 AGTTGGGGGAAAGAGAGGTA 57.265 50.000 0.00 0.00 0.00 3.08
4058 4115 2.094130 GGTAGGGAGCTGTTCTGTACAC 60.094 54.545 0.00 0.00 32.10 2.90
4069 4126 0.319555 TCTGTACACGGTCTGCTTGC 60.320 55.000 0.00 0.00 0.00 4.01
4076 4133 0.391661 ACGGTCTGCTTGCATGTAGG 60.392 55.000 15.92 4.79 0.00 3.18
4128 4185 8.970859 ATTTAAGTCAAGTGCTATGCTAGAAT 57.029 30.769 0.00 0.00 0.00 2.40
4148 4205 6.996509 AGAATTGGACATGTTTGTATGCTTT 58.003 32.000 0.00 0.00 35.79 3.51
4155 4212 6.363357 GGACATGTTTGTATGCTTTTCTGAAC 59.637 38.462 0.00 0.00 35.79 3.18
4164 4221 5.767816 ATGCTTTTCTGAACTTAAACCGT 57.232 34.783 0.00 0.00 0.00 4.83
4177 4234 5.797051 ACTTAAACCGTAACCAGATGCTTA 58.203 37.500 0.00 0.00 0.00 3.09
4225 4282 3.228188 TCTTGATGTGGTCAGGCTTTT 57.772 42.857 0.00 0.00 38.29 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.659799 TCTTCCATCACTTTCTTTGTTTATCGA 59.340 33.333 0.00 0.00 0.00 3.59
53 54 8.935844 GTTTTTCTTCCATCACTTTCTTTGTTT 58.064 29.630 0.00 0.00 0.00 2.83
61 62 5.823045 AGACGAGTTTTTCTTCCATCACTTT 59.177 36.000 0.00 0.00 0.00 2.66
150 151 1.536072 GCTGCGTCGAGGTGATTATCA 60.536 52.381 7.01 0.00 0.00 2.15
154 155 1.446792 CTGCTGCGTCGAGGTGATT 60.447 57.895 7.01 0.00 0.00 2.57
551 558 2.399856 AAACTTGCGCTCGGTTTGA 58.600 47.368 19.08 0.00 32.84 2.69
573 580 0.606944 CGTTTTCAACCCATCCCCGA 60.607 55.000 0.00 0.00 0.00 5.14
648 655 3.824443 CTCGTTCATTTGGGGTAAAAGGT 59.176 43.478 0.00 0.00 0.00 3.50
669 676 2.122813 CCCTATCCTGTCCGCCCT 60.123 66.667 0.00 0.00 0.00 5.19
705 712 1.145803 GGCGAACTGTGTGGAGTAAC 58.854 55.000 0.00 0.00 0.00 2.50
744 751 4.819630 TCTATCACAAGGCGAACTGTTTTT 59.180 37.500 0.00 0.00 0.00 1.94
745 752 4.385825 TCTATCACAAGGCGAACTGTTTT 58.614 39.130 0.00 0.00 0.00 2.43
746 753 4.002906 TCTATCACAAGGCGAACTGTTT 57.997 40.909 0.00 0.00 0.00 2.83
747 754 3.678056 TCTATCACAAGGCGAACTGTT 57.322 42.857 0.00 0.00 0.00 3.16
748 755 3.430929 GGATCTATCACAAGGCGAACTGT 60.431 47.826 0.00 0.00 0.00 3.55
749 756 3.126831 GGATCTATCACAAGGCGAACTG 58.873 50.000 0.00 0.00 0.00 3.16
750 757 2.766263 TGGATCTATCACAAGGCGAACT 59.234 45.455 0.00 0.00 0.00 3.01
751 758 3.179443 TGGATCTATCACAAGGCGAAC 57.821 47.619 0.00 0.00 0.00 3.95
752 759 4.380531 GAATGGATCTATCACAAGGCGAA 58.619 43.478 0.00 0.00 0.00 4.70
753 760 3.244215 GGAATGGATCTATCACAAGGCGA 60.244 47.826 0.00 0.00 0.00 5.54
754 761 3.070018 GGAATGGATCTATCACAAGGCG 58.930 50.000 0.00 0.00 0.00 5.52
755 762 3.181440 TGGGAATGGATCTATCACAAGGC 60.181 47.826 0.00 0.00 0.00 4.35
756 763 4.392940 GTGGGAATGGATCTATCACAAGG 58.607 47.826 4.98 0.00 0.00 3.61
757 764 4.103785 AGGTGGGAATGGATCTATCACAAG 59.896 45.833 10.29 0.00 0.00 3.16
758 765 4.047166 AGGTGGGAATGGATCTATCACAA 58.953 43.478 10.29 0.00 0.00 3.33
759 766 3.392285 CAGGTGGGAATGGATCTATCACA 59.608 47.826 10.29 3.55 0.00 3.58
760 767 3.392616 ACAGGTGGGAATGGATCTATCAC 59.607 47.826 0.00 0.00 0.00 3.06
761 768 3.668821 ACAGGTGGGAATGGATCTATCA 58.331 45.455 0.00 0.00 0.00 2.15
762 769 4.223923 CCTACAGGTGGGAATGGATCTATC 59.776 50.000 0.00 0.00 32.26 2.08
763 770 4.171234 CCTACAGGTGGGAATGGATCTAT 58.829 47.826 0.00 0.00 32.26 1.98
764 771 3.587498 CCTACAGGTGGGAATGGATCTA 58.413 50.000 0.00 0.00 32.26 1.98
765 772 2.412591 CCTACAGGTGGGAATGGATCT 58.587 52.381 0.00 0.00 32.26 2.75
844 851 0.456312 GTGGTCGGTAGTCTTCGCAG 60.456 60.000 0.00 0.00 0.00 5.18
880 887 5.457633 GGTGTAATACAAAGGGGGCATAGAT 60.458 44.000 0.00 0.00 0.00 1.98
902 909 1.757699 GCGAAATGGGTAGAGAGAGGT 59.242 52.381 0.00 0.00 0.00 3.85
970 977 0.313672 CACGCTGCTCTAGAGGATCC 59.686 60.000 21.23 2.48 33.66 3.36
997 1005 1.952296 GCTGCTGGGTCTTTCCATATG 59.048 52.381 0.00 0.00 36.05 1.78
998 1006 1.475751 CGCTGCTGGGTCTTTCCATAT 60.476 52.381 0.00 0.00 36.05 1.78
999 1007 0.107703 CGCTGCTGGGTCTTTCCATA 60.108 55.000 0.00 0.00 36.05 2.74
1121 1129 3.196913 TACGCCGCTTCGTGTGTCA 62.197 57.895 9.84 0.00 43.21 3.58
1158 1166 2.832661 AACCCGCACTGCTTTGCA 60.833 55.556 10.21 0.00 43.15 4.08
1224 1232 2.283388 AAGTACCGCCGGGTCAGA 60.283 61.111 8.57 0.00 46.01 3.27
1405 1413 1.555075 GAGGAGCTCATGGTTGTGGTA 59.445 52.381 17.19 0.00 0.00 3.25
1473 1481 1.757682 AGATCCTGTCTCTGTCCGAC 58.242 55.000 0.00 0.00 28.45 4.79
1701 1709 0.878523 TGGCGTCTTTGGTGAAGTCG 60.879 55.000 0.00 2.02 45.52 4.18
1737 1745 2.954020 ATGCGTACGACCAGGCGATG 62.954 60.000 21.65 0.00 34.83 3.84
1892 1900 1.561542 GATTTCCCTCCCTCAGAAGCA 59.438 52.381 0.00 0.00 0.00 3.91
1968 1976 9.420551 CTAATTAAGAGAACGGTTGTAAAGAGT 57.579 33.333 0.00 0.00 0.00 3.24
1990 1998 6.263168 CCTGTCAACAACAAAGACTTCCTAAT 59.737 38.462 0.00 0.00 37.45 1.73
1991 1999 5.588648 CCTGTCAACAACAAAGACTTCCTAA 59.411 40.000 0.00 0.00 37.45 2.69
1992 2000 5.123227 CCTGTCAACAACAAAGACTTCCTA 58.877 41.667 0.00 0.00 37.45 2.94
1993 2001 3.947834 CCTGTCAACAACAAAGACTTCCT 59.052 43.478 0.00 0.00 37.45 3.36
2154 2162 4.631377 CGAGAACTGCATTGAACCAAGATA 59.369 41.667 0.00 0.00 0.00 1.98
2203 2211 4.393834 TGTTGTGCAGCCTATAAAACTCA 58.606 39.130 0.00 0.00 0.00 3.41
2209 2217 3.643199 TCCATGTTGTGCAGCCTATAA 57.357 42.857 0.00 0.00 0.00 0.98
2245 2253 3.118149 CCATGTCACTCCATCCAAGATCA 60.118 47.826 0.00 0.00 0.00 2.92
2407 2415 1.075542 CGCTCAACAACCGCTGAATA 58.924 50.000 0.00 0.00 0.00 1.75
2444 2452 2.229792 GGTCACCTGCTCAATGAAACA 58.770 47.619 0.00 0.00 0.00 2.83
2502 2510 4.517453 TCACGATTTTTCTTACAAGGGGTG 59.483 41.667 0.00 0.00 0.00 4.61
2503 2511 4.721132 TCACGATTTTTCTTACAAGGGGT 58.279 39.130 0.00 0.00 0.00 4.95
2686 2695 5.250235 TGTATTTTCCGAGTTTTGTTGCA 57.750 34.783 0.00 0.00 0.00 4.08
2714 2723 1.739562 CACTGGAGCTGCCGTCTTC 60.740 63.158 1.53 0.00 40.66 2.87
2801 2810 3.139025 AGTGGAAGTATGCATAATGGGCT 59.861 43.478 8.28 0.00 0.00 5.19
2907 2916 2.066262 CATTTGGCAGCTGCAAGAAAG 58.934 47.619 37.63 21.27 44.36 2.62
2989 2998 1.344763 GGTAATGGTCCGGGATCTGAG 59.655 57.143 9.08 0.00 0.00 3.35
3128 3137 1.089481 CCGATTTGCCTGCTTCGCTA 61.089 55.000 0.00 0.00 0.00 4.26
3188 3197 1.227674 CTGCCTTATCCGGGACAGC 60.228 63.158 0.00 0.31 0.00 4.40
3237 3246 3.414700 CCGCTGCTGACGAACACC 61.415 66.667 0.00 0.00 0.00 4.16
3261 3270 3.996363 CCTTGGAAAGCTACCAAAATTGC 59.004 43.478 20.60 2.36 44.44 3.56
3286 3295 6.301169 TGGTTGGACAGTTAAAAATGGTTT 57.699 33.333 0.00 0.00 0.00 3.27
3328 3337 3.475566 TCAGTAACTGCAAACTGAGCT 57.524 42.857 17.67 0.00 45.40 4.09
3807 3816 3.555547 CGAAACTGATGAAGTGACACACA 59.444 43.478 8.59 8.06 39.81 3.72
3808 3817 3.555956 ACGAAACTGATGAAGTGACACAC 59.444 43.478 8.59 2.19 39.81 3.82
3809 3818 3.792401 ACGAAACTGATGAAGTGACACA 58.208 40.909 8.59 0.00 39.81 3.72
3839 3887 4.423209 ACCCCTCTCTCCTGGGCC 62.423 72.222 0.00 0.00 43.54 5.80
3856 3904 0.840288 TTCCCCCAACTAGCAGCTCA 60.840 55.000 0.00 0.00 0.00 4.26
3875 3923 2.178984 CCCCTCCATCTCTACCTCTCTT 59.821 54.545 0.00 0.00 0.00 2.85
3884 3932 3.041365 CCCCTCCCCTCCATCTCT 58.959 66.667 0.00 0.00 0.00 3.10
3952 4005 0.400213 ACAGATCCAAACCGGCTGAA 59.600 50.000 0.00 0.00 31.25 3.02
4058 4115 1.091771 CCCTACATGCAAGCAGACCG 61.092 60.000 0.00 0.00 0.00 4.79
4069 4126 1.069823 CAGAGCTGGCTACCCTACATG 59.930 57.143 0.00 0.00 0.00 3.21
4076 4133 0.035458 AACACACAGAGCTGGCTACC 59.965 55.000 0.00 0.00 34.19 3.18
4128 4185 6.040278 TCAGAAAAGCATACAAACATGTCCAA 59.960 34.615 0.00 0.00 0.00 3.53
4148 4205 5.916318 TCTGGTTACGGTTTAAGTTCAGAA 58.084 37.500 0.00 0.00 0.00 3.02
4155 4212 6.183360 CCTTAAGCATCTGGTTACGGTTTAAG 60.183 42.308 13.57 0.00 40.42 1.85
4164 4221 3.585289 TGACCACCTTAAGCATCTGGTTA 59.415 43.478 11.50 6.89 35.29 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.