Multiple sequence alignment - TraesCS2A01G309900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G309900 chr2A 100.000 7010 0 0 1 7010 533469945 533462936 0.000000e+00 12946.0
1 TraesCS2A01G309900 chr2A 84.932 73 11 0 1211 1283 740852028 740851956 2.710000e-09 75.0
2 TraesCS2A01G309900 chr2B 94.817 2547 88 19 3634 6161 468240776 468238255 0.000000e+00 3932.0
3 TraesCS2A01G309900 chr2B 90.165 2359 120 55 728 3052 468243754 468241474 0.000000e+00 2968.0
4 TraesCS2A01G309900 chr2B 97.783 451 8 1 3194 3642 468241259 468240809 0.000000e+00 776.0
5 TraesCS2A01G309900 chr2B 88.372 387 22 9 6168 6550 468238209 468237842 1.790000e-120 444.0
6 TraesCS2A01G309900 chr2B 82.675 456 35 18 6581 7010 468237840 468237403 1.440000e-96 364.0
7 TraesCS2A01G309900 chr2B 94.149 188 10 1 3022 3209 468241473 468241287 1.150000e-72 285.0
8 TraesCS2A01G309900 chr2B 82.051 312 28 14 391 701 468244100 468243816 2.530000e-59 241.0
9 TraesCS2A01G309900 chr2D 92.586 2428 92 34 391 2775 395136290 395133908 0.000000e+00 3406.0
10 TraesCS2A01G309900 chr2D 95.993 1697 52 4 4136 5827 395132216 395130531 0.000000e+00 2743.0
11 TraesCS2A01G309900 chr2D 91.506 1142 44 15 5873 6984 395130534 395129416 0.000000e+00 1522.0
12 TraesCS2A01G309900 chr2D 95.682 880 34 3 2765 3642 395133720 395132843 0.000000e+00 1411.0
13 TraesCS2A01G309900 chr2D 94.083 507 23 4 3634 4138 395132810 395132309 0.000000e+00 763.0
14 TraesCS2A01G309900 chr2D 82.955 88 12 3 1211 1295 608920136 608920049 7.540000e-10 76.8
15 TraesCS2A01G309900 chr3B 79.114 1513 281 19 4260 5747 133195135 133196637 0.000000e+00 1011.0
16 TraesCS2A01G309900 chr3B 88.235 272 30 2 3218 3488 133194504 133194774 2.440000e-84 324.0
17 TraesCS2A01G309900 chr3A 80.776 1134 218 0 4613 5746 100887466 100886333 0.000000e+00 887.0
18 TraesCS2A01G309900 chr3A 91.646 395 28 5 1 390 678321592 678321198 6.190000e-150 542.0
19 TraesCS2A01G309900 chr3A 91.500 400 23 5 1 390 88192346 88191948 2.220000e-149 540.0
20 TraesCS2A01G309900 chr3A 88.848 269 28 2 3221 3488 100888464 100888197 5.240000e-86 329.0
21 TraesCS2A01G309900 chr3D 80.477 1132 219 2 4616 5746 84571186 84570056 0.000000e+00 865.0
22 TraesCS2A01G309900 chr3D 80.477 1132 219 2 4616 5746 84588982 84587852 0.000000e+00 865.0
23 TraesCS2A01G309900 chr3D 88.476 269 29 2 3221 3488 84572181 84571914 2.440000e-84 324.0
24 TraesCS2A01G309900 chr3D 88.476 269 29 2 3221 3488 84589977 84589710 2.440000e-84 324.0
25 TraesCS2A01G309900 chr3D 86.477 281 36 2 3221 3500 84508762 84508483 2.460000e-79 307.0
26 TraesCS2A01G309900 chr7A 92.911 395 23 5 1 390 174710006 174710400 2.840000e-158 569.0
27 TraesCS2A01G309900 chr7A 90.886 395 27 7 1 386 133624109 133624503 8.060000e-144 521.0
28 TraesCS2A01G309900 chr5A 90.998 411 27 6 1 401 645983946 645984356 4.780000e-151 545.0
29 TraesCS2A01G309900 chr5A 90.452 398 30 6 1 390 561182291 561181894 1.040000e-142 518.0
30 TraesCS2A01G309900 chr5A 83.099 71 12 0 1211 1281 631513782 631513712 1.630000e-06 65.8
31 TraesCS2A01G309900 chr6A 90.274 401 27 6 1 390 376508642 376509041 1.350000e-141 514.0
32 TraesCS2A01G309900 chr6A 90.176 397 31 7 1 390 564674900 564675295 1.740000e-140 510.0
33 TraesCS2A01G309900 chr4A 89.578 403 36 6 1 397 583443896 583444298 2.260000e-139 507.0
34 TraesCS2A01G309900 chr5B 83.099 71 12 0 1211 1281 631894121 631894051 1.630000e-06 65.8
35 TraesCS2A01G309900 chr5D 81.690 71 13 0 1211 1281 503085035 503084965 7.590000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G309900 chr2A 533462936 533469945 7009 True 12946.000000 12946 100.000000 1 7010 1 chr2A.!!$R1 7009
1 TraesCS2A01G309900 chr2B 468237403 468244100 6697 True 1287.142857 3932 90.001714 391 7010 7 chr2B.!!$R1 6619
2 TraesCS2A01G309900 chr2D 395129416 395136290 6874 True 1969.000000 3406 93.970000 391 6984 5 chr2D.!!$R2 6593
3 TraesCS2A01G309900 chr3B 133194504 133196637 2133 False 667.500000 1011 83.674500 3218 5747 2 chr3B.!!$F1 2529
4 TraesCS2A01G309900 chr3A 100886333 100888464 2131 True 608.000000 887 84.812000 3221 5746 2 chr3A.!!$R3 2525
5 TraesCS2A01G309900 chr3D 84570056 84572181 2125 True 594.500000 865 84.476500 3221 5746 2 chr3D.!!$R2 2525
6 TraesCS2A01G309900 chr3D 84587852 84589977 2125 True 594.500000 865 84.476500 3221 5746 2 chr3D.!!$R3 2525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 311 0.040425 CAAAAGTCCGTTTGCTCCCG 60.040 55.000 0.00 0.0 32.10 5.14 F
374 375 0.108756 GCCGGATAGAATAGGGTCGC 60.109 60.000 5.05 0.0 0.00 5.19 F
375 376 0.170561 CCGGATAGAATAGGGTCGCG 59.829 60.000 0.00 0.0 0.00 5.87 F
1336 1408 0.375454 TGTTTGACTTGAACGCACGG 59.625 50.000 0.00 0.0 0.00 4.94 F
1402 1474 1.090052 CCTTCCGAAAGCGTGATCCC 61.090 60.000 0.00 0.0 35.23 3.85 F
1781 1869 1.130561 GGGCTGTTGCATAAGTTCGAC 59.869 52.381 0.00 0.0 41.91 4.20 F
1890 1979 1.331756 ACTTGCGCTCTGAAAACACTG 59.668 47.619 9.73 0.0 0.00 3.66 F
3034 3328 1.611977 GGCAAACCCACTACTTTCCAC 59.388 52.381 0.00 0.0 0.00 4.02 F
4121 4590 2.849942 TGTGTCCTGTTGAATGTGGAG 58.150 47.619 0.00 0.0 0.00 3.86 F
4911 5539 2.094417 CCTTTTCGTCTTCTTCATCGCC 59.906 50.000 0.00 0.0 0.00 5.54 F
5286 5914 0.690762 AACCGTACATGAGGCACCTT 59.309 50.000 0.00 0.0 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1331 1403 1.060698 GATGCTAACGAACTTCCGTGC 59.939 52.381 0.00 0.0 42.54 5.34 R
1759 1846 1.398390 CGAACTTATGCAACAGCCCTC 59.602 52.381 0.00 0.0 0.00 4.30 R
1981 2072 1.812571 AGCAGAACTAACGCCCATTTG 59.187 47.619 0.00 0.0 0.00 2.32 R
3064 3389 1.981533 GCGCTGCAACTGAATCTTTTC 59.018 47.619 0.00 0.0 0.00 2.29 R
3213 3580 2.016318 TGAACCAAATATCTGCAGCGG 58.984 47.619 9.47 4.8 0.00 5.52 R
3624 3993 0.107508 AGGTCGATGGACAATGCAGG 60.108 55.000 10.22 0.0 45.28 4.85 R
3831 4240 2.754472 TGCAGATATCCAATTCGACCG 58.246 47.619 0.00 0.0 0.00 4.79 R
4313 4876 0.178903 TCAGGGCCCTCAACACTACT 60.179 55.000 25.77 0.0 0.00 2.57 R
5034 5662 0.745845 CAAAGAGGCCAGGGTCGATG 60.746 60.000 5.01 0.0 0.00 3.84 R
5777 6408 0.773644 GGATCTGGGGCATGTATGGT 59.226 55.000 0.00 0.0 0.00 3.55 R
6985 7704 0.251297 TGCCTCCTCCCACACAAATG 60.251 55.000 0.00 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.282462 CGGCTTCCTTGGCACCTT 60.282 61.111 0.00 0.00 0.00 3.50
18 19 1.903404 CGGCTTCCTTGGCACCTTT 60.903 57.895 0.00 0.00 0.00 3.11
19 20 1.463553 CGGCTTCCTTGGCACCTTTT 61.464 55.000 0.00 0.00 0.00 2.27
20 21 0.758734 GGCTTCCTTGGCACCTTTTT 59.241 50.000 0.00 0.00 0.00 1.94
36 37 3.928343 TTTTTCACCTTTGCGGTCG 57.072 47.368 0.00 0.00 44.93 4.79
37 38 0.382515 TTTTTCACCTTTGCGGTCGG 59.617 50.000 0.00 0.00 44.93 4.79
38 39 1.448922 TTTTCACCTTTGCGGTCGGG 61.449 55.000 0.00 0.00 44.93 5.14
39 40 2.612095 TTTCACCTTTGCGGTCGGGT 62.612 55.000 0.00 0.00 44.93 5.28
40 41 2.999739 TTCACCTTTGCGGTCGGGTC 63.000 60.000 0.00 0.00 44.93 4.46
41 42 4.675029 ACCTTTGCGGTCGGGTCG 62.675 66.667 0.00 0.00 44.93 4.79
42 43 4.367023 CCTTTGCGGTCGGGTCGA 62.367 66.667 0.00 0.00 0.00 4.20
92 93 3.866582 GCCATGGACGGGGGAGAG 61.867 72.222 18.40 0.00 0.00 3.20
93 94 2.041922 CCATGGACGGGGGAGAGA 60.042 66.667 5.56 0.00 0.00 3.10
94 95 1.689233 CCATGGACGGGGGAGAGAA 60.689 63.158 5.56 0.00 0.00 2.87
95 96 1.690219 CCATGGACGGGGGAGAGAAG 61.690 65.000 5.56 0.00 0.00 2.85
96 97 1.383248 ATGGACGGGGGAGAGAAGG 60.383 63.158 0.00 0.00 0.00 3.46
97 98 2.764547 GGACGGGGGAGAGAAGGG 60.765 72.222 0.00 0.00 0.00 3.95
98 99 2.764547 GACGGGGGAGAGAAGGGG 60.765 72.222 0.00 0.00 0.00 4.79
99 100 4.416601 ACGGGGGAGAGAAGGGGG 62.417 72.222 0.00 0.00 0.00 5.40
119 120 4.716977 GGAGGGACGTGGGAGGGT 62.717 72.222 0.00 0.00 0.00 4.34
120 121 2.606826 GAGGGACGTGGGAGGGTT 60.607 66.667 0.00 0.00 0.00 4.11
121 122 2.122099 AGGGACGTGGGAGGGTTT 60.122 61.111 0.00 0.00 0.00 3.27
122 123 0.906282 GAGGGACGTGGGAGGGTTTA 60.906 60.000 0.00 0.00 0.00 2.01
123 124 0.908180 AGGGACGTGGGAGGGTTTAG 60.908 60.000 0.00 0.00 0.00 1.85
124 125 1.600638 GGACGTGGGAGGGTTTAGG 59.399 63.158 0.00 0.00 0.00 2.69
125 126 1.600638 GACGTGGGAGGGTTTAGGG 59.399 63.158 0.00 0.00 0.00 3.53
126 127 0.906282 GACGTGGGAGGGTTTAGGGA 60.906 60.000 0.00 0.00 0.00 4.20
127 128 0.474273 ACGTGGGAGGGTTTAGGGAA 60.474 55.000 0.00 0.00 0.00 3.97
128 129 0.694196 CGTGGGAGGGTTTAGGGAAA 59.306 55.000 0.00 0.00 0.00 3.13
129 130 1.074244 CGTGGGAGGGTTTAGGGAAAA 59.926 52.381 0.00 0.00 0.00 2.29
130 131 2.291346 CGTGGGAGGGTTTAGGGAAAAT 60.291 50.000 0.00 0.00 0.00 1.82
131 132 3.096852 GTGGGAGGGTTTAGGGAAAATG 58.903 50.000 0.00 0.00 0.00 2.32
132 133 2.043801 TGGGAGGGTTTAGGGAAAATGG 59.956 50.000 0.00 0.00 0.00 3.16
133 134 2.043939 GGGAGGGTTTAGGGAAAATGGT 59.956 50.000 0.00 0.00 0.00 3.55
134 135 3.096852 GGAGGGTTTAGGGAAAATGGTG 58.903 50.000 0.00 0.00 0.00 4.17
135 136 2.496070 GAGGGTTTAGGGAAAATGGTGC 59.504 50.000 0.00 0.00 0.00 5.01
136 137 1.553248 GGGTTTAGGGAAAATGGTGCC 59.447 52.381 0.00 0.00 0.00 5.01
137 138 2.252714 GGTTTAGGGAAAATGGTGCCA 58.747 47.619 0.00 0.00 0.00 4.92
138 139 2.635427 GGTTTAGGGAAAATGGTGCCAA 59.365 45.455 0.00 0.00 0.00 4.52
139 140 3.071747 GGTTTAGGGAAAATGGTGCCAAA 59.928 43.478 0.00 0.00 0.00 3.28
140 141 4.263287 GGTTTAGGGAAAATGGTGCCAAAT 60.263 41.667 0.00 0.00 0.00 2.32
141 142 4.550076 TTAGGGAAAATGGTGCCAAATG 57.450 40.909 0.00 0.00 0.00 2.32
142 143 1.629861 AGGGAAAATGGTGCCAAATGG 59.370 47.619 0.00 0.00 38.53 3.16
168 169 1.053424 GGGGGTTTTTGGTTTCTCCC 58.947 55.000 0.00 0.00 34.77 4.30
169 170 1.693083 GGGGGTTTTTGGTTTCTCCCA 60.693 52.381 0.00 0.00 36.90 4.37
170 171 1.414919 GGGGTTTTTGGTTTCTCCCAC 59.585 52.381 0.00 0.00 36.90 4.61
171 172 1.414919 GGGTTTTTGGTTTCTCCCACC 59.585 52.381 0.00 0.00 33.14 4.61
172 173 1.067974 GGTTTTTGGTTTCTCCCACCG 59.932 52.381 0.00 0.00 37.07 4.94
173 174 2.025898 GTTTTTGGTTTCTCCCACCGA 58.974 47.619 0.00 0.00 37.07 4.69
174 175 1.682740 TTTTGGTTTCTCCCACCGAC 58.317 50.000 0.00 0.00 37.07 4.79
175 176 0.547075 TTTGGTTTCTCCCACCGACA 59.453 50.000 0.00 0.00 37.07 4.35
176 177 0.547075 TTGGTTTCTCCCACCGACAA 59.453 50.000 0.00 0.00 37.07 3.18
177 178 0.107831 TGGTTTCTCCCACCGACAAG 59.892 55.000 0.00 0.00 37.07 3.16
178 179 1.235281 GGTTTCTCCCACCGACAAGC 61.235 60.000 0.00 0.00 0.00 4.01
179 180 1.301401 TTTCTCCCACCGACAAGCG 60.301 57.895 0.00 0.00 40.47 4.68
189 190 4.344865 GACAAGCGGGCCAGGGAA 62.345 66.667 4.39 0.00 0.00 3.97
190 191 4.351054 ACAAGCGGGCCAGGGAAG 62.351 66.667 4.39 0.00 0.00 3.46
195 196 3.646715 CGGGCCAGGGAAGGACAA 61.647 66.667 4.39 0.00 38.98 3.18
196 197 2.356667 GGGCCAGGGAAGGACAAG 59.643 66.667 4.39 0.00 38.98 3.16
197 198 2.361737 GGCCAGGGAAGGACAAGC 60.362 66.667 0.00 0.00 36.38 4.01
198 199 2.747855 GCCAGGGAAGGACAAGCG 60.748 66.667 0.00 0.00 0.00 4.68
199 200 2.747855 CCAGGGAAGGACAAGCGC 60.748 66.667 0.00 0.00 0.00 5.92
200 201 3.121030 CAGGGAAGGACAAGCGCG 61.121 66.667 0.00 0.00 0.00 6.86
201 202 3.626924 AGGGAAGGACAAGCGCGT 61.627 61.111 8.43 0.00 0.00 6.01
202 203 3.423154 GGGAAGGACAAGCGCGTG 61.423 66.667 21.97 21.97 0.00 5.34
203 204 4.090057 GGAAGGACAAGCGCGTGC 62.090 66.667 23.44 14.39 43.24 5.34
234 235 4.719616 GCGCGCTGTCCGTTTCAC 62.720 66.667 26.67 0.00 39.71 3.18
235 236 4.072088 CGCGCTGTCCGTTTCACC 62.072 66.667 5.56 0.00 39.71 4.02
236 237 3.723348 GCGCTGTCCGTTTCACCC 61.723 66.667 0.00 0.00 39.71 4.61
237 238 3.047877 CGCTGTCCGTTTCACCCC 61.048 66.667 0.00 0.00 0.00 4.95
238 239 2.112297 GCTGTCCGTTTCACCCCA 59.888 61.111 0.00 0.00 0.00 4.96
239 240 1.527380 GCTGTCCGTTTCACCCCAA 60.527 57.895 0.00 0.00 0.00 4.12
240 241 1.104577 GCTGTCCGTTTCACCCCAAA 61.105 55.000 0.00 0.00 0.00 3.28
241 242 1.394618 CTGTCCGTTTCACCCCAAAA 58.605 50.000 0.00 0.00 0.00 2.44
242 243 1.066454 CTGTCCGTTTCACCCCAAAAC 59.934 52.381 0.00 0.00 34.09 2.43
243 244 0.386476 GTCCGTTTCACCCCAAAACC 59.614 55.000 0.00 0.00 33.93 3.27
244 245 1.102222 TCCGTTTCACCCCAAAACCG 61.102 55.000 0.00 0.00 33.93 4.44
245 246 1.360911 CGTTTCACCCCAAAACCGG 59.639 57.895 0.00 0.00 33.93 5.28
246 247 1.068417 GTTTCACCCCAAAACCGGC 59.932 57.895 0.00 0.00 31.80 6.13
247 248 2.491022 TTTCACCCCAAAACCGGCG 61.491 57.895 0.00 0.00 0.00 6.46
251 252 4.356442 CCCCAAAACCGGCGCAAG 62.356 66.667 10.83 1.01 43.44 4.01
252 253 3.601685 CCCAAAACCGGCGCAAGT 61.602 61.111 10.83 1.82 41.68 3.16
253 254 2.415426 CCAAAACCGGCGCAAGTT 59.585 55.556 10.83 9.35 41.68 2.66
254 255 1.227118 CCAAAACCGGCGCAAGTTT 60.227 52.632 18.11 18.11 37.80 2.66
255 256 1.486644 CCAAAACCGGCGCAAGTTTG 61.487 55.000 22.68 18.38 36.36 2.93
256 257 1.227118 AAAACCGGCGCAAGTTTGG 60.227 52.632 22.68 11.08 36.36 3.28
257 258 2.636778 AAAACCGGCGCAAGTTTGGG 62.637 55.000 22.68 9.04 43.22 4.12
264 265 4.986708 GCAAGTTTGGGCCGGGGA 62.987 66.667 2.18 0.00 0.00 4.81
265 266 2.037208 CAAGTTTGGGCCGGGGAT 59.963 61.111 2.18 0.00 0.00 3.85
266 267 2.037208 AAGTTTGGGCCGGGGATG 59.963 61.111 2.18 0.00 0.00 3.51
267 268 3.600410 AAGTTTGGGCCGGGGATGG 62.600 63.158 2.18 0.00 0.00 3.51
274 275 4.104183 GCCGGGGATGGGTCGAAA 62.104 66.667 2.18 0.00 0.00 3.46
275 276 2.189521 CCGGGGATGGGTCGAAAG 59.810 66.667 0.00 0.00 0.00 2.62
276 277 2.513897 CGGGGATGGGTCGAAAGC 60.514 66.667 0.00 0.00 0.00 3.51
277 278 2.513897 GGGGATGGGTCGAAAGCG 60.514 66.667 0.00 0.00 39.35 4.68
278 279 2.513897 GGGATGGGTCGAAAGCGG 60.514 66.667 0.00 0.00 38.28 5.52
279 280 2.582436 GGATGGGTCGAAAGCGGA 59.418 61.111 0.00 0.00 38.28 5.54
280 281 1.814169 GGATGGGTCGAAAGCGGAC 60.814 63.158 0.00 0.00 38.28 4.79
281 282 1.079405 GATGGGTCGAAAGCGGACA 60.079 57.895 0.00 0.00 38.28 4.02
282 283 1.359459 GATGGGTCGAAAGCGGACAC 61.359 60.000 0.00 0.31 38.28 3.67
283 284 2.029964 GGGTCGAAAGCGGACACA 59.970 61.111 0.00 0.00 38.28 3.72
284 285 1.595929 GGGTCGAAAGCGGACACAA 60.596 57.895 0.00 0.00 38.28 3.33
285 286 1.161563 GGGTCGAAAGCGGACACAAA 61.162 55.000 0.00 0.00 38.28 2.83
286 287 0.234884 GGTCGAAAGCGGACACAAAG 59.765 55.000 0.00 0.00 38.28 2.77
287 288 0.384353 GTCGAAAGCGGACACAAAGC 60.384 55.000 0.00 0.00 38.28 3.51
288 289 1.438710 CGAAAGCGGACACAAAGCG 60.439 57.895 0.00 0.00 35.78 4.68
289 290 1.082104 GAAAGCGGACACAAAGCGG 60.082 57.895 0.00 0.00 35.78 5.52
290 291 1.503818 GAAAGCGGACACAAAGCGGA 61.504 55.000 0.00 0.00 35.78 5.54
291 292 1.782028 AAAGCGGACACAAAGCGGAC 61.782 55.000 0.00 0.00 35.78 4.79
292 293 2.933878 AAGCGGACACAAAGCGGACA 62.934 55.000 0.00 0.00 35.78 4.02
293 294 2.539338 GCGGACACAAAGCGGACAA 61.539 57.895 0.00 0.00 0.00 3.18
294 295 2.018544 CGGACACAAAGCGGACAAA 58.981 52.632 0.00 0.00 0.00 2.83
295 296 0.378962 CGGACACAAAGCGGACAAAA 59.621 50.000 0.00 0.00 0.00 2.44
296 297 1.596954 CGGACACAAAGCGGACAAAAG 60.597 52.381 0.00 0.00 0.00 2.27
297 298 1.404035 GGACACAAAGCGGACAAAAGT 59.596 47.619 0.00 0.00 0.00 2.66
298 299 2.540973 GGACACAAAGCGGACAAAAGTC 60.541 50.000 0.00 0.00 0.00 3.01
299 300 1.404035 ACACAAAGCGGACAAAAGTCC 59.596 47.619 4.59 4.59 40.04 3.85
307 308 2.401017 GGACAAAAGTCCGTTTGCTC 57.599 50.000 5.75 3.77 41.33 4.26
308 309 1.001706 GGACAAAAGTCCGTTTGCTCC 60.002 52.381 5.75 7.99 41.33 4.70
309 310 1.001706 GACAAAAGTCCGTTTGCTCCC 60.002 52.381 5.75 0.00 41.33 4.30
310 311 0.040425 CAAAAGTCCGTTTGCTCCCG 60.040 55.000 0.00 0.00 32.10 5.14
311 312 1.792118 AAAAGTCCGTTTGCTCCCGC 61.792 55.000 0.00 0.00 0.00 6.13
312 313 2.951475 AAAGTCCGTTTGCTCCCGCA 62.951 55.000 0.00 0.00 46.24 5.69
327 328 4.279043 GCACGCTGGGCCGTTTTT 62.279 61.111 0.00 0.00 39.83 1.94
359 360 2.763651 CTTAAAAGGACGAGGCCGG 58.236 57.895 0.00 0.00 40.78 6.13
360 361 0.248289 CTTAAAAGGACGAGGCCGGA 59.752 55.000 5.05 0.00 40.78 5.14
361 362 0.906775 TTAAAAGGACGAGGCCGGAT 59.093 50.000 5.05 0.00 40.78 4.18
362 363 1.779221 TAAAAGGACGAGGCCGGATA 58.221 50.000 5.05 0.00 40.78 2.59
363 364 0.464452 AAAAGGACGAGGCCGGATAG 59.536 55.000 5.05 0.00 40.78 2.08
364 365 0.396695 AAAGGACGAGGCCGGATAGA 60.397 55.000 5.05 0.00 40.78 1.98
365 366 0.396695 AAGGACGAGGCCGGATAGAA 60.397 55.000 5.05 0.00 40.78 2.10
366 367 0.178958 AGGACGAGGCCGGATAGAAT 60.179 55.000 5.05 0.00 40.78 2.40
367 368 1.075050 AGGACGAGGCCGGATAGAATA 59.925 52.381 5.05 0.00 40.78 1.75
368 369 1.473278 GGACGAGGCCGGATAGAATAG 59.527 57.143 5.05 0.00 40.78 1.73
369 370 1.473278 GACGAGGCCGGATAGAATAGG 59.527 57.143 5.05 0.00 40.78 2.57
370 371 0.818296 CGAGGCCGGATAGAATAGGG 59.182 60.000 5.05 0.00 0.00 3.53
371 372 1.891450 CGAGGCCGGATAGAATAGGGT 60.891 57.143 5.05 0.00 0.00 4.34
372 373 1.826096 GAGGCCGGATAGAATAGGGTC 59.174 57.143 5.05 0.00 0.00 4.46
373 374 0.531200 GGCCGGATAGAATAGGGTCG 59.469 60.000 5.05 0.00 0.00 4.79
374 375 0.108756 GCCGGATAGAATAGGGTCGC 60.109 60.000 5.05 0.00 0.00 5.19
375 376 0.170561 CCGGATAGAATAGGGTCGCG 59.829 60.000 0.00 0.00 0.00 5.87
376 377 0.456312 CGGATAGAATAGGGTCGCGC 60.456 60.000 0.00 0.00 0.00 6.86
377 378 0.456312 GGATAGAATAGGGTCGCGCG 60.456 60.000 26.76 26.76 0.00 6.86
378 379 0.456312 GATAGAATAGGGTCGCGCGG 60.456 60.000 31.69 11.75 0.00 6.46
379 380 1.177256 ATAGAATAGGGTCGCGCGGT 61.177 55.000 31.69 14.72 0.00 5.68
380 381 2.067091 TAGAATAGGGTCGCGCGGTG 62.067 60.000 31.69 1.17 0.00 4.94
381 382 4.524318 AATAGGGTCGCGCGGTGG 62.524 66.667 31.69 0.71 0.00 4.61
414 415 1.450312 CGAGGTACGGGTAGGTCGT 60.450 63.158 0.00 0.00 43.64 4.34
426 427 2.866762 GGTAGGTCGTGAGAAATCATGC 59.133 50.000 0.00 0.00 45.01 4.06
636 637 1.084370 GTCCGTTTCCTGCTCCATCG 61.084 60.000 0.00 0.00 0.00 3.84
666 667 5.626955 GGAAATTTTCTTGTTCTTCTCGCAG 59.373 40.000 8.93 0.00 0.00 5.18
776 817 5.362717 TGCTCCAGACGGATCTAAGATTTTA 59.637 40.000 0.00 0.00 41.79 1.52
822 863 4.952957 TGCTGTAGACAGATAGAAGAAGCT 59.047 41.667 13.87 0.00 46.59 3.74
838 879 4.688021 AGAAGCTCCACTGATACGATTTC 58.312 43.478 0.00 0.00 0.00 2.17
853 894 3.564225 ACGATTTCGGCCTGATTTAATCC 59.436 43.478 0.00 0.00 44.95 3.01
858 899 1.179174 GGCCTGATTTAATCCCCCGC 61.179 60.000 0.00 0.00 0.00 6.13
1043 1090 1.152777 CCAACTCCAACCAGCACCA 60.153 57.895 0.00 0.00 0.00 4.17
1167 1226 3.241059 CTGCTGCGCTACGACGAC 61.241 66.667 9.73 0.00 34.06 4.34
1236 1295 1.443407 CTCCCAGATCGCCATCGTT 59.557 57.895 0.00 0.00 36.96 3.85
1239 1298 1.889105 CCAGATCGCCATCGTTGGG 60.889 63.158 14.27 4.88 43.84 4.12
1333 1405 8.858003 TTAATTTAATGTTTGACTTGAACGCA 57.142 26.923 0.00 0.00 0.00 5.24
1334 1406 6.747659 ATTTAATGTTTGACTTGAACGCAC 57.252 33.333 0.00 0.00 0.00 5.34
1336 1408 0.375454 TGTTTGACTTGAACGCACGG 59.625 50.000 0.00 0.00 0.00 4.94
1402 1474 1.090052 CCTTCCGAAAGCGTGATCCC 61.090 60.000 0.00 0.00 35.23 3.85
1655 1740 5.411669 GGGAGTTGTAGTCCATTTACACAAG 59.588 44.000 3.17 0.00 39.52 3.16
1781 1869 1.130561 GGGCTGTTGCATAAGTTCGAC 59.869 52.381 0.00 0.00 41.91 4.20
1793 1881 6.123441 GCATAAGTTCGACGATTGAATTCTC 58.877 40.000 7.05 0.00 0.00 2.87
1799 1887 2.609459 CGACGATTGAATTCTCAAGGGG 59.391 50.000 7.05 0.00 44.68 4.79
1846 1935 4.548494 TGCACATGGTAATACCGTATACG 58.452 43.478 18.40 18.40 42.58 3.06
1853 1942 6.223138 TGGTAATACCGTATACGTACTTCG 57.777 41.667 22.87 9.62 42.58 3.79
1860 1949 2.802816 CGTATACGTACTTCGGTAGGCT 59.197 50.000 17.16 0.00 44.69 4.58
1887 1976 3.812609 TCATTACTTGCGCTCTGAAAACA 59.187 39.130 9.73 0.00 0.00 2.83
1889 1978 1.668419 ACTTGCGCTCTGAAAACACT 58.332 45.000 9.73 0.00 0.00 3.55
1890 1979 1.331756 ACTTGCGCTCTGAAAACACTG 59.668 47.619 9.73 0.00 0.00 3.66
1896 1985 1.672881 GCTCTGAAAACACTGTGCTGT 59.327 47.619 7.90 0.00 0.00 4.40
1957 2048 2.600867 CTGGCGATCGAGAAAGAAGAAC 59.399 50.000 21.57 0.00 0.00 3.01
1978 2069 9.520515 AAGAACCAGATATTTCAGTATGTTGTT 57.479 29.630 0.00 0.00 37.40 2.83
1981 2072 8.723942 ACCAGATATTTCAGTATGTTGTTCTC 57.276 34.615 0.00 0.00 37.40 2.87
1990 2081 3.440173 AGTATGTTGTTCTCAAATGGGCG 59.560 43.478 0.00 0.00 35.20 6.13
1999 2090 3.334691 TCTCAAATGGGCGTTAGTTCTG 58.665 45.455 0.00 0.00 0.00 3.02
2149 2240 5.633601 GCTTTTGCTGTTTTACCATAAGGTC 59.366 40.000 0.00 0.00 44.94 3.85
2191 2282 3.068873 TGTTGTTTCCCCATACTGTTTGC 59.931 43.478 0.00 0.00 0.00 3.68
2192 2283 2.950781 TGTTTCCCCATACTGTTTGCA 58.049 42.857 0.00 0.00 0.00 4.08
2193 2284 2.625790 TGTTTCCCCATACTGTTTGCAC 59.374 45.455 0.00 0.00 0.00 4.57
2293 2384 2.093288 TGGAGGCTGCAATCTAGTCTTG 60.093 50.000 6.12 0.00 28.53 3.02
2377 2468 8.732746 TCCCTGAAGTTAAAGCATATCTTAAC 57.267 34.615 0.00 0.00 33.88 2.01
2482 2574 9.880157 ACGTTTTGAGTAATACCTACATTATGT 57.120 29.630 2.58 2.58 32.37 2.29
2550 2646 4.207165 GCTGGAATTTGCATCCTTACCTA 58.793 43.478 6.40 0.00 37.85 3.08
2601 2697 6.808321 ACCTATGATACCTTTTCAGTGCTA 57.192 37.500 0.00 0.00 0.00 3.49
2602 2698 6.583562 ACCTATGATACCTTTTCAGTGCTAC 58.416 40.000 0.00 0.00 0.00 3.58
2603 2699 6.384305 ACCTATGATACCTTTTCAGTGCTACT 59.616 38.462 0.00 0.00 0.00 2.57
2604 2700 7.563924 ACCTATGATACCTTTTCAGTGCTACTA 59.436 37.037 0.00 0.00 0.00 1.82
2624 2720 7.828717 GCTACTACTAGGTAGTATAGGAAAGGG 59.171 44.444 15.13 5.01 46.27 3.95
2630 2726 9.825706 ACTAGGTAGTATAGGAAAGGGAAATAG 57.174 37.037 0.00 0.00 34.13 1.73
2638 2734 2.350804 GGAAAGGGAAATAGCGACGTTC 59.649 50.000 0.00 0.00 0.00 3.95
2660 2756 9.107367 CGTTCTGAAATCTCAAACAAGTAATTC 57.893 33.333 0.00 0.00 0.00 2.17
3034 3328 1.611977 GGCAAACCCACTACTTTCCAC 59.388 52.381 0.00 0.00 0.00 4.02
3213 3580 9.950680 TGTTGTTCTCATAACTTTCTTCAATTC 57.049 29.630 0.00 0.00 0.00 2.17
3611 3978 8.504005 ACCACTTTGAAACTACAAATCGAATAG 58.496 33.333 0.00 0.00 38.73 1.73
3799 4208 8.709272 TGATATTTGATCCATATGAAAAGGCA 57.291 30.769 3.65 0.00 0.00 4.75
3804 4213 9.768662 ATTTGATCCATATGAAAAGGCAAATAC 57.231 29.630 3.65 0.00 33.28 1.89
3810 4219 8.250332 TCCATATGAAAAGGCAAATACAAACTC 58.750 33.333 3.65 0.00 0.00 3.01
3811 4220 8.034215 CCATATGAAAAGGCAAATACAAACTCA 58.966 33.333 3.65 0.00 0.00 3.41
3831 4240 7.820044 ACTCAATTTGAACTTCTACTCGATC 57.180 36.000 0.01 0.00 0.00 3.69
4121 4590 2.849942 TGTGTCCTGTTGAATGTGGAG 58.150 47.619 0.00 0.00 0.00 3.86
4164 4725 7.927629 ACAAATGTATTGCTTCTGTTTCACATT 59.072 29.630 0.00 0.00 37.05 2.71
4243 4806 9.771534 TTTTTAAATTTTCCCATGACTAAGGTG 57.228 29.630 0.00 0.00 0.00 4.00
4246 4809 3.350219 TTTCCCATGACTAAGGTGCTC 57.650 47.619 0.00 0.00 0.00 4.26
4370 4933 4.184649 AGGAAAATGTGGTCTCTTTGGT 57.815 40.909 0.00 0.00 0.00 3.67
4494 5057 2.558795 GGAGGCCTTTTCAACTTTCTCC 59.441 50.000 6.77 0.00 33.76 3.71
4520 5083 3.512033 AGGATTCTTCGTGTCTACAGC 57.488 47.619 0.00 0.00 0.00 4.40
4538 5101 9.319143 GTCTACAGCATTATCAATGAGTAAGTT 57.681 33.333 3.11 0.00 41.46 2.66
4560 5185 7.370383 AGTTTACATTCATGTACTTTTGCCAG 58.630 34.615 0.00 0.00 42.48 4.85
4728 5356 2.342650 CCCATGCCCTGTTGGTTCG 61.343 63.158 0.00 0.00 36.04 3.95
4836 5464 5.006746 ACTCTTCTTCAACACAAATGACGAC 59.993 40.000 0.00 0.00 0.00 4.34
4911 5539 2.094417 CCTTTTCGTCTTCTTCATCGCC 59.906 50.000 0.00 0.00 0.00 5.54
4953 5581 2.102588 GACGTATGGTATTGCTGTCCCT 59.897 50.000 0.00 0.00 0.00 4.20
5034 5662 0.895530 TTCTCGGTCCCATGTCTGAC 59.104 55.000 0.00 0.00 0.00 3.51
5286 5914 0.690762 AACCGTACATGAGGCACCTT 59.309 50.000 0.00 0.00 0.00 3.50
5765 6393 2.003937 GGGGTGAGACCTCTCTATCC 57.996 60.000 4.00 4.22 43.25 2.59
5768 6396 1.218196 GGTGAGACCTCTCTATCCCCA 59.782 57.143 4.00 0.00 43.25 4.96
5769 6397 2.158234 GGTGAGACCTCTCTATCCCCAT 60.158 54.545 4.00 0.00 43.25 4.00
5770 6398 3.076182 GGTGAGACCTCTCTATCCCCATA 59.924 52.174 4.00 0.00 43.25 2.74
5777 6408 9.716556 GAGACCTCTCTATCCCCATAATAATAA 57.283 37.037 0.00 0.00 39.81 1.40
5853 6486 4.970860 ATATGAGGTTCATACTGCAGCT 57.029 40.909 15.27 0.00 41.62 4.24
5854 6487 2.391616 TGAGGTTCATACTGCAGCTG 57.608 50.000 15.27 10.11 0.00 4.24
5858 6491 4.054671 GAGGTTCATACTGCAGCTGTATC 58.945 47.826 19.26 6.15 0.00 2.24
5859 6492 3.708631 AGGTTCATACTGCAGCTGTATCT 59.291 43.478 19.26 8.46 0.00 1.98
5860 6493 3.806521 GGTTCATACTGCAGCTGTATCTG 59.193 47.826 19.26 12.66 37.15 2.90
5861 6494 4.442052 GGTTCATACTGCAGCTGTATCTGA 60.442 45.833 19.26 14.46 36.19 3.27
5865 6498 7.944729 TCATACTGCAGCTGTATCTGATATA 57.055 36.000 19.26 0.00 36.19 0.86
5867 6500 8.975295 TCATACTGCAGCTGTATCTGATATATT 58.025 33.333 19.26 0.00 36.19 1.28
5946 6581 4.137116 TCCTATTGTTGGGATTCTCACG 57.863 45.455 0.00 0.00 0.00 4.35
6006 6641 0.798776 CCAATCTCCGCAAGTCACAC 59.201 55.000 0.00 0.00 0.00 3.82
6030 6665 0.319405 AAGCAAAATCAGCAGGCCAC 59.681 50.000 5.01 0.00 0.00 5.01
6073 6708 5.885230 TGTTATTTCTCATGAAGGTGCTG 57.115 39.130 0.00 0.00 33.28 4.41
6162 6799 4.726416 CAGTCGAGTGGATTTCATTTTGG 58.274 43.478 12.66 0.00 0.00 3.28
6167 6834 2.901839 AGTGGATTTCATTTTGGCAGCT 59.098 40.909 0.00 0.00 0.00 4.24
6172 6839 3.540314 TTTCATTTTGGCAGCTTGTGT 57.460 38.095 0.00 0.00 0.00 3.72
6173 6840 4.662468 TTTCATTTTGGCAGCTTGTGTA 57.338 36.364 0.00 0.00 0.00 2.90
6174 6841 4.662468 TTCATTTTGGCAGCTTGTGTAA 57.338 36.364 0.00 0.00 0.00 2.41
6175 6842 3.976169 TCATTTTGGCAGCTTGTGTAAC 58.024 40.909 0.00 0.00 37.35 2.50
6216 6894 4.997395 TCAGTACATGTTCTCTCTTTTGCC 59.003 41.667 2.30 0.00 0.00 4.52
6279 6957 1.544691 ACACCTTGTCGGTAGTAGCAG 59.455 52.381 0.00 0.00 46.94 4.24
6280 6958 1.816835 CACCTTGTCGGTAGTAGCAGA 59.183 52.381 0.00 0.00 46.94 4.26
6346 7024 6.347696 AGGCTCTGAAATCTGAATCTTAGTG 58.652 40.000 0.00 0.00 0.00 2.74
6386 7064 2.127118 CAGCTGCTTCCAAACGCG 60.127 61.111 3.53 3.53 0.00 6.01
6447 7125 0.039798 GTTGCTGTCACATGCTGGTG 60.040 55.000 0.00 2.40 40.16 4.17
6544 7226 4.335647 AGCTCCGTTGGCCCACAG 62.336 66.667 7.86 0.00 0.00 3.66
6612 7294 0.467290 GGGGAACAGTGACAGGCAAA 60.467 55.000 0.00 0.00 0.00 3.68
6892 7601 0.889994 GTGCAGGCCATCATGTTTGA 59.110 50.000 5.01 0.00 36.00 2.69
6910 7619 5.472820 TGTTTGACATGAGATTGTGCATACA 59.527 36.000 0.00 0.00 34.31 2.29
6911 7620 7.839297 ATGTTTGACATGAGATTGTGCATACAC 60.839 37.037 0.00 0.00 41.41 2.90
6952 7668 1.089920 CGAATGTGCTTTGGGAGAGG 58.910 55.000 0.00 0.00 0.00 3.69
6953 7669 1.339055 CGAATGTGCTTTGGGAGAGGA 60.339 52.381 0.00 0.00 0.00 3.71
6954 7670 2.363683 GAATGTGCTTTGGGAGAGGAG 58.636 52.381 0.00 0.00 0.00 3.69
6962 7678 3.169099 CTTTGGGAGAGGAGTTGAGAGA 58.831 50.000 0.00 0.00 0.00 3.10
6963 7682 2.523325 TGGGAGAGGAGTTGAGAGAG 57.477 55.000 0.00 0.00 0.00 3.20
6968 7687 4.081697 GGGAGAGGAGTTGAGAGAGAAAAG 60.082 50.000 0.00 0.00 0.00 2.27
6979 7698 4.018960 TGAGAGAGAAAAGGGGAAGGATTG 60.019 45.833 0.00 0.00 0.00 2.67
6985 7704 0.251787 AAGGGGAAGGATTGTGGTGC 60.252 55.000 0.00 0.00 0.00 5.01
6988 7707 1.560505 GGGAAGGATTGTGGTGCATT 58.439 50.000 0.00 0.00 0.00 3.56
6989 7708 1.901833 GGGAAGGATTGTGGTGCATTT 59.098 47.619 0.00 0.00 0.00 2.32
6996 7715 0.463204 TTGTGGTGCATTTGTGTGGG 59.537 50.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.463553 AAAAGGTGCCAAGGAAGCCG 61.464 55.000 0.00 0.00 0.00 5.52
75 76 3.866582 CTCTCCCCCGTCCATGGC 61.867 72.222 6.96 0.96 0.00 4.40
76 77 1.689233 TTCTCTCCCCCGTCCATGG 60.689 63.158 4.97 4.97 0.00 3.66
77 78 1.690219 CCTTCTCTCCCCCGTCCATG 61.690 65.000 0.00 0.00 0.00 3.66
78 79 1.383248 CCTTCTCTCCCCCGTCCAT 60.383 63.158 0.00 0.00 0.00 3.41
79 80 2.038975 CCTTCTCTCCCCCGTCCA 59.961 66.667 0.00 0.00 0.00 4.02
80 81 2.764547 CCCTTCTCTCCCCCGTCC 60.765 72.222 0.00 0.00 0.00 4.79
81 82 2.764547 CCCCTTCTCTCCCCCGTC 60.765 72.222 0.00 0.00 0.00 4.79
82 83 4.416601 CCCCCTTCTCTCCCCCGT 62.417 72.222 0.00 0.00 0.00 5.28
102 103 4.716977 ACCCTCCCACGTCCCTCC 62.717 72.222 0.00 0.00 0.00 4.30
103 104 0.906282 TAAACCCTCCCACGTCCCTC 60.906 60.000 0.00 0.00 0.00 4.30
104 105 0.908180 CTAAACCCTCCCACGTCCCT 60.908 60.000 0.00 0.00 0.00 4.20
105 106 1.600638 CTAAACCCTCCCACGTCCC 59.399 63.158 0.00 0.00 0.00 4.46
106 107 1.600638 CCTAAACCCTCCCACGTCC 59.399 63.158 0.00 0.00 0.00 4.79
107 108 0.906282 TCCCTAAACCCTCCCACGTC 60.906 60.000 0.00 0.00 0.00 4.34
108 109 0.474273 TTCCCTAAACCCTCCCACGT 60.474 55.000 0.00 0.00 0.00 4.49
109 110 0.694196 TTTCCCTAAACCCTCCCACG 59.306 55.000 0.00 0.00 0.00 4.94
110 111 2.984435 TTTTCCCTAAACCCTCCCAC 57.016 50.000 0.00 0.00 0.00 4.61
111 112 2.043801 CCATTTTCCCTAAACCCTCCCA 59.956 50.000 0.00 0.00 0.00 4.37
112 113 2.043939 ACCATTTTCCCTAAACCCTCCC 59.956 50.000 0.00 0.00 0.00 4.30
113 114 3.096852 CACCATTTTCCCTAAACCCTCC 58.903 50.000 0.00 0.00 0.00 4.30
114 115 2.496070 GCACCATTTTCCCTAAACCCTC 59.504 50.000 0.00 0.00 0.00 4.30
115 116 2.536066 GCACCATTTTCCCTAAACCCT 58.464 47.619 0.00 0.00 0.00 4.34
116 117 1.553248 GGCACCATTTTCCCTAAACCC 59.447 52.381 0.00 0.00 0.00 4.11
117 118 2.252714 TGGCACCATTTTCCCTAAACC 58.747 47.619 0.00 0.00 0.00 3.27
118 119 4.344359 TTTGGCACCATTTTCCCTAAAC 57.656 40.909 0.00 0.00 0.00 2.01
119 120 4.263243 CCATTTGGCACCATTTTCCCTAAA 60.263 41.667 0.00 0.00 0.00 1.85
120 121 3.262915 CCATTTGGCACCATTTTCCCTAA 59.737 43.478 0.00 0.00 0.00 2.69
121 122 2.836981 CCATTTGGCACCATTTTCCCTA 59.163 45.455 0.00 0.00 0.00 3.53
122 123 1.629861 CCATTTGGCACCATTTTCCCT 59.370 47.619 0.00 0.00 0.00 4.20
123 124 2.112380 CCATTTGGCACCATTTTCCC 57.888 50.000 0.00 0.00 0.00 3.97
149 150 1.053424 GGGAGAAACCAAAAACCCCC 58.947 55.000 0.00 0.00 41.20 5.40
150 151 1.414919 GTGGGAGAAACCAAAAACCCC 59.585 52.381 0.00 0.00 43.34 4.95
151 152 1.414919 GGTGGGAGAAACCAAAAACCC 59.585 52.381 0.00 0.00 43.34 4.11
152 153 1.067974 CGGTGGGAGAAACCAAAAACC 59.932 52.381 0.00 0.00 43.34 3.27
153 154 2.025898 TCGGTGGGAGAAACCAAAAAC 58.974 47.619 0.00 0.00 43.34 2.43
154 155 2.025898 GTCGGTGGGAGAAACCAAAAA 58.974 47.619 0.00 0.00 43.34 1.94
155 156 1.064611 TGTCGGTGGGAGAAACCAAAA 60.065 47.619 0.00 0.00 43.34 2.44
156 157 0.547075 TGTCGGTGGGAGAAACCAAA 59.453 50.000 0.00 0.00 43.34 3.28
157 158 0.547075 TTGTCGGTGGGAGAAACCAA 59.453 50.000 0.00 0.00 43.34 3.67
158 159 0.107831 CTTGTCGGTGGGAGAAACCA 59.892 55.000 0.00 0.00 41.20 3.67
159 160 1.235281 GCTTGTCGGTGGGAGAAACC 61.235 60.000 0.00 0.00 38.08 3.27
160 161 1.566018 CGCTTGTCGGTGGGAGAAAC 61.566 60.000 0.00 0.00 33.78 2.78
161 162 1.301401 CGCTTGTCGGTGGGAGAAA 60.301 57.895 0.00 0.00 33.78 2.52
162 163 2.342279 CGCTTGTCGGTGGGAGAA 59.658 61.111 0.00 0.00 33.78 2.87
172 173 4.344865 TTCCCTGGCCCGCTTGTC 62.345 66.667 0.00 0.00 0.00 3.18
173 174 4.351054 CTTCCCTGGCCCGCTTGT 62.351 66.667 0.00 0.00 0.00 3.16
178 179 3.628646 CTTGTCCTTCCCTGGCCCG 62.629 68.421 0.00 0.00 0.00 6.13
179 180 2.356667 CTTGTCCTTCCCTGGCCC 59.643 66.667 0.00 0.00 0.00 5.80
180 181 2.361737 GCTTGTCCTTCCCTGGCC 60.362 66.667 0.00 0.00 0.00 5.36
181 182 2.747855 CGCTTGTCCTTCCCTGGC 60.748 66.667 0.00 0.00 0.00 4.85
182 183 2.747855 GCGCTTGTCCTTCCCTGG 60.748 66.667 0.00 0.00 0.00 4.45
183 184 3.121030 CGCGCTTGTCCTTCCCTG 61.121 66.667 5.56 0.00 0.00 4.45
184 185 3.626924 ACGCGCTTGTCCTTCCCT 61.627 61.111 5.73 0.00 0.00 4.20
185 186 3.423154 CACGCGCTTGTCCTTCCC 61.423 66.667 5.73 0.00 0.00 3.97
186 187 4.090057 GCACGCGCTTGTCCTTCC 62.090 66.667 15.84 0.00 34.30 3.46
187 188 4.430423 CGCACGCGCTTGTCCTTC 62.430 66.667 15.84 0.00 35.30 3.46
217 218 4.719616 GTGAAACGGACAGCGCGC 62.720 66.667 26.66 26.66 0.00 6.86
218 219 4.072088 GGTGAAACGGACAGCGCG 62.072 66.667 0.00 0.00 38.12 6.86
219 220 3.723348 GGGTGAAACGGACAGCGC 61.723 66.667 0.00 0.00 38.12 5.92
220 221 3.047877 GGGGTGAAACGGACAGCG 61.048 66.667 0.00 0.00 38.12 5.18
221 222 1.104577 TTTGGGGTGAAACGGACAGC 61.105 55.000 0.00 0.00 38.12 4.40
222 223 1.066454 GTTTTGGGGTGAAACGGACAG 59.934 52.381 0.00 0.00 38.12 3.51
223 224 1.104630 GTTTTGGGGTGAAACGGACA 58.895 50.000 0.00 0.00 38.12 4.02
224 225 0.386476 GGTTTTGGGGTGAAACGGAC 59.614 55.000 0.00 0.00 37.76 4.79
225 226 1.102222 CGGTTTTGGGGTGAAACGGA 61.102 55.000 0.00 0.00 38.71 4.69
226 227 1.360911 CGGTTTTGGGGTGAAACGG 59.639 57.895 0.00 0.00 37.76 4.44
227 228 1.360911 CCGGTTTTGGGGTGAAACG 59.639 57.895 0.00 0.00 37.76 3.60
228 229 1.068417 GCCGGTTTTGGGGTGAAAC 59.932 57.895 1.90 0.00 36.51 2.78
229 230 2.491022 CGCCGGTTTTGGGGTGAAA 61.491 57.895 1.90 0.00 37.20 2.69
230 231 2.907917 CGCCGGTTTTGGGGTGAA 60.908 61.111 1.90 0.00 37.20 3.18
234 235 4.356442 CTTGCGCCGGTTTTGGGG 62.356 66.667 4.18 0.00 44.36 4.96
235 236 2.636778 AAACTTGCGCCGGTTTTGGG 62.637 55.000 17.91 0.00 32.60 4.12
236 237 1.227118 AAACTTGCGCCGGTTTTGG 60.227 52.632 17.91 0.00 32.60 3.28
237 238 1.486644 CCAAACTTGCGCCGGTTTTG 61.487 55.000 20.07 15.83 34.01 2.44
238 239 1.227118 CCAAACTTGCGCCGGTTTT 60.227 52.632 20.07 6.37 34.01 2.43
239 240 2.415426 CCAAACTTGCGCCGGTTT 59.585 55.556 17.91 17.91 36.27 3.27
240 241 3.601685 CCCAAACTTGCGCCGGTT 61.602 61.111 4.18 7.14 0.00 4.44
247 248 4.986708 TCCCCGGCCCAAACTTGC 62.987 66.667 0.00 0.00 0.00 4.01
248 249 2.037208 ATCCCCGGCCCAAACTTG 59.963 61.111 0.00 0.00 0.00 3.16
249 250 2.037208 CATCCCCGGCCCAAACTT 59.963 61.111 0.00 0.00 0.00 2.66
250 251 4.060667 CCATCCCCGGCCCAAACT 62.061 66.667 0.00 0.00 0.00 2.66
257 258 4.104183 TTTCGACCCATCCCCGGC 62.104 66.667 0.00 0.00 0.00 6.13
258 259 2.189521 CTTTCGACCCATCCCCGG 59.810 66.667 0.00 0.00 0.00 5.73
259 260 2.513897 GCTTTCGACCCATCCCCG 60.514 66.667 0.00 0.00 0.00 5.73
260 261 2.513897 CGCTTTCGACCCATCCCC 60.514 66.667 0.00 0.00 38.10 4.81
261 262 2.513897 CCGCTTTCGACCCATCCC 60.514 66.667 0.00 0.00 38.10 3.85
262 263 1.814169 GTCCGCTTTCGACCCATCC 60.814 63.158 0.00 0.00 38.10 3.51
263 264 1.079405 TGTCCGCTTTCGACCCATC 60.079 57.895 0.00 0.00 38.10 3.51
264 265 1.375523 GTGTCCGCTTTCGACCCAT 60.376 57.895 0.00 0.00 38.10 4.00
265 266 2.029964 GTGTCCGCTTTCGACCCA 59.970 61.111 0.00 0.00 38.10 4.51
266 267 1.161563 TTTGTGTCCGCTTTCGACCC 61.162 55.000 0.00 0.00 38.10 4.46
267 268 0.234884 CTTTGTGTCCGCTTTCGACC 59.765 55.000 0.00 0.00 38.10 4.79
268 269 0.384353 GCTTTGTGTCCGCTTTCGAC 60.384 55.000 0.00 0.00 38.10 4.20
269 270 1.827315 CGCTTTGTGTCCGCTTTCGA 61.827 55.000 0.00 0.00 38.10 3.71
270 271 1.438710 CGCTTTGTGTCCGCTTTCG 60.439 57.895 0.00 0.00 0.00 3.46
271 272 1.082104 CCGCTTTGTGTCCGCTTTC 60.082 57.895 0.00 0.00 0.00 2.62
272 273 1.525077 TCCGCTTTGTGTCCGCTTT 60.525 52.632 0.00 0.00 0.00 3.51
273 274 2.110213 TCCGCTTTGTGTCCGCTT 59.890 55.556 0.00 0.00 0.00 4.68
274 275 2.665185 GTCCGCTTTGTGTCCGCT 60.665 61.111 0.00 0.00 0.00 5.52
275 276 2.054140 TTTGTCCGCTTTGTGTCCGC 62.054 55.000 0.00 0.00 0.00 5.54
276 277 0.378962 TTTTGTCCGCTTTGTGTCCG 59.621 50.000 0.00 0.00 0.00 4.79
277 278 1.404035 ACTTTTGTCCGCTTTGTGTCC 59.596 47.619 0.00 0.00 0.00 4.02
278 279 2.716398 GACTTTTGTCCGCTTTGTGTC 58.284 47.619 0.00 0.00 43.37 3.67
279 280 2.844122 GACTTTTGTCCGCTTTGTGT 57.156 45.000 0.00 0.00 43.37 3.72
290 291 1.029681 GGGAGCAAACGGACTTTTGT 58.970 50.000 3.71 0.00 38.51 2.83
291 292 0.040425 CGGGAGCAAACGGACTTTTG 60.040 55.000 0.00 0.00 39.15 2.44
292 293 2.327228 CGGGAGCAAACGGACTTTT 58.673 52.632 0.00 0.00 0.00 2.27
293 294 4.058797 CGGGAGCAAACGGACTTT 57.941 55.556 0.00 0.00 0.00 2.66
310 311 4.279043 AAAAACGGCCCAGCGTGC 62.279 61.111 0.00 0.00 0.00 5.34
333 334 5.335426 GGCCTCGTCCTTTTAAGGTAAAAAG 60.335 44.000 8.31 0.00 46.54 2.27
334 335 4.520111 GGCCTCGTCCTTTTAAGGTAAAAA 59.480 41.667 8.31 0.00 46.54 1.94
335 336 4.074259 GGCCTCGTCCTTTTAAGGTAAAA 58.926 43.478 8.31 0.00 46.54 1.52
336 337 3.678289 GGCCTCGTCCTTTTAAGGTAAA 58.322 45.455 8.31 0.00 46.54 2.01
337 338 2.354003 CGGCCTCGTCCTTTTAAGGTAA 60.354 50.000 0.00 0.00 46.54 2.85
338 339 1.205417 CGGCCTCGTCCTTTTAAGGTA 59.795 52.381 0.00 0.00 46.54 3.08
339 340 0.036671 CGGCCTCGTCCTTTTAAGGT 60.037 55.000 0.00 0.00 46.54 3.50
341 342 0.248289 TCCGGCCTCGTCCTTTTAAG 59.752 55.000 0.00 0.00 33.95 1.85
342 343 0.906775 ATCCGGCCTCGTCCTTTTAA 59.093 50.000 0.00 0.00 33.95 1.52
343 344 1.684983 CTATCCGGCCTCGTCCTTTTA 59.315 52.381 0.00 0.00 33.95 1.52
344 345 0.464452 CTATCCGGCCTCGTCCTTTT 59.536 55.000 0.00 0.00 33.95 2.27
345 346 0.396695 TCTATCCGGCCTCGTCCTTT 60.397 55.000 0.00 0.00 33.95 3.11
346 347 0.396695 TTCTATCCGGCCTCGTCCTT 60.397 55.000 0.00 0.00 33.95 3.36
347 348 0.178958 ATTCTATCCGGCCTCGTCCT 60.179 55.000 0.00 0.00 33.95 3.85
348 349 1.473278 CTATTCTATCCGGCCTCGTCC 59.527 57.143 0.00 0.00 33.95 4.79
349 350 1.473278 CCTATTCTATCCGGCCTCGTC 59.527 57.143 0.00 0.00 33.95 4.20
350 351 1.546961 CCTATTCTATCCGGCCTCGT 58.453 55.000 0.00 0.00 33.95 4.18
351 352 0.818296 CCCTATTCTATCCGGCCTCG 59.182 60.000 0.00 0.00 0.00 4.63
352 353 1.826096 GACCCTATTCTATCCGGCCTC 59.174 57.143 0.00 0.00 0.00 4.70
353 354 1.891450 CGACCCTATTCTATCCGGCCT 60.891 57.143 0.00 0.00 0.00 5.19
354 355 0.531200 CGACCCTATTCTATCCGGCC 59.469 60.000 0.00 0.00 0.00 6.13
355 356 0.108756 GCGACCCTATTCTATCCGGC 60.109 60.000 0.00 0.00 0.00 6.13
356 357 0.170561 CGCGACCCTATTCTATCCGG 59.829 60.000 0.00 0.00 0.00 5.14
357 358 0.456312 GCGCGACCCTATTCTATCCG 60.456 60.000 12.10 0.00 0.00 4.18
358 359 0.456312 CGCGCGACCCTATTCTATCC 60.456 60.000 28.94 0.00 0.00 2.59
359 360 0.456312 CCGCGCGACCCTATTCTATC 60.456 60.000 34.63 0.00 0.00 2.08
360 361 1.177256 ACCGCGCGACCCTATTCTAT 61.177 55.000 34.63 0.00 0.00 1.98
361 362 1.825191 ACCGCGCGACCCTATTCTA 60.825 57.895 34.63 0.00 0.00 2.10
362 363 3.145551 ACCGCGCGACCCTATTCT 61.146 61.111 34.63 0.00 0.00 2.40
363 364 2.960129 CACCGCGCGACCCTATTC 60.960 66.667 34.63 0.00 0.00 1.75
364 365 4.524318 CCACCGCGCGACCCTATT 62.524 66.667 34.63 2.64 0.00 1.73
398 399 0.393537 CTCACGACCTACCCGTACCT 60.394 60.000 0.00 0.00 38.29 3.08
405 406 2.866762 GCATGATTTCTCACGACCTACC 59.133 50.000 0.00 0.00 33.22 3.18
414 415 1.744741 TGCGCCGCATGATTTCTCA 60.745 52.632 8.16 0.00 31.71 3.27
549 550 2.043450 TTTTATGGGCGGCCCTGG 60.043 61.111 36.21 0.00 45.70 4.45
617 618 1.084370 CGATGGAGCAGGAAACGGAC 61.084 60.000 0.00 0.00 0.00 4.79
636 637 6.978659 AGAAGAACAAGAAAATTTCCGAAACC 59.021 34.615 1.57 0.00 0.00 3.27
666 667 8.289618 GGTGGGAATTTATTTCTTTTCTTTTGC 58.710 33.333 0.00 0.00 34.56 3.68
718 724 3.315191 CGTGACTTTGACAGAAACCCAAT 59.685 43.478 0.00 0.00 0.00 3.16
722 728 2.031683 CCACGTGACTTTGACAGAAACC 59.968 50.000 19.30 0.00 0.00 3.27
808 849 4.998671 TCAGTGGAGCTTCTTCTATCTG 57.001 45.455 0.00 0.00 0.00 2.90
809 850 5.240623 CGTATCAGTGGAGCTTCTTCTATCT 59.759 44.000 0.00 0.00 0.00 1.98
810 851 5.239744 TCGTATCAGTGGAGCTTCTTCTATC 59.760 44.000 0.00 0.00 0.00 2.08
811 852 5.133941 TCGTATCAGTGGAGCTTCTTCTAT 58.866 41.667 0.00 0.00 0.00 1.98
812 853 4.524053 TCGTATCAGTGGAGCTTCTTCTA 58.476 43.478 0.00 0.00 0.00 2.10
813 854 3.357203 TCGTATCAGTGGAGCTTCTTCT 58.643 45.455 0.00 0.00 0.00 2.85
822 863 1.202486 GGCCGAAATCGTATCAGTGGA 60.202 52.381 1.79 0.00 37.74 4.02
838 879 0.889186 CGGGGGATTAAATCAGGCCG 60.889 60.000 0.00 0.00 0.00 6.13
988 1035 1.406887 GCCGTCCATTCTTGCTTCCTA 60.407 52.381 0.00 0.00 0.00 2.94
1158 1217 2.019206 CCGTCGTCGTCGTCGTAG 59.981 66.667 17.80 6.99 44.09 3.51
1331 1403 1.060698 GATGCTAACGAACTTCCGTGC 59.939 52.381 0.00 0.00 42.54 5.34
1333 1405 3.056749 AGAAGATGCTAACGAACTTCCGT 60.057 43.478 0.00 0.00 45.64 4.69
1334 1406 3.304559 CAGAAGATGCTAACGAACTTCCG 59.695 47.826 0.00 0.00 38.04 4.30
1655 1740 8.909708 TGATACATAAACAAATTACTGCTTGC 57.090 30.769 0.00 0.00 0.00 4.01
1757 1844 2.887151 ACTTATGCAACAGCCCTCTT 57.113 45.000 0.00 0.00 0.00 2.85
1758 1845 2.716217 GAACTTATGCAACAGCCCTCT 58.284 47.619 0.00 0.00 0.00 3.69
1759 1846 1.398390 CGAACTTATGCAACAGCCCTC 59.602 52.381 0.00 0.00 0.00 4.30
1781 1869 5.643379 TTTTCCCCTTGAGAATTCAATCG 57.357 39.130 8.44 0.00 42.19 3.34
1846 1935 3.656559 TGAAACAAGCCTACCGAAGTAC 58.343 45.455 0.00 0.00 0.00 2.73
1853 1942 4.671766 CGCAAGTAATGAAACAAGCCTACC 60.672 45.833 0.00 0.00 0.00 3.18
1860 1949 3.812609 TCAGAGCGCAAGTAATGAAACAA 59.187 39.130 11.47 0.00 41.68 2.83
1887 1976 2.401583 TCTGAAACACACAGCACAGT 57.598 45.000 0.00 0.00 35.61 3.55
1889 1978 3.443329 ACAATTCTGAAACACACAGCACA 59.557 39.130 0.00 0.00 35.61 4.57
1890 1979 3.792956 CACAATTCTGAAACACACAGCAC 59.207 43.478 0.00 0.00 35.61 4.40
1896 1985 5.827267 TCATTCTCCACAATTCTGAAACACA 59.173 36.000 0.00 0.00 0.00 3.72
1957 2048 8.722480 TGAGAACAACATACTGAAATATCTGG 57.278 34.615 0.00 0.00 0.00 3.86
1978 2069 3.334691 CAGAACTAACGCCCATTTGAGA 58.665 45.455 0.00 0.00 0.00 3.27
1981 2072 1.812571 AGCAGAACTAACGCCCATTTG 59.187 47.619 0.00 0.00 0.00 2.32
1990 2081 5.629079 ACAAGCCAATAAGCAGAACTAAC 57.371 39.130 0.00 0.00 34.23 2.34
1999 2090 2.094545 CCCAGTCAACAAGCCAATAAGC 60.095 50.000 0.00 0.00 0.00 3.09
2167 2258 5.229423 CAAACAGTATGGGGAAACAACATG 58.771 41.667 0.00 0.00 43.62 3.21
2191 2282 3.921119 TTACTCCATTGCTGCAAAGTG 57.079 42.857 20.06 13.64 0.00 3.16
2192 2283 3.828451 ACATTACTCCATTGCTGCAAAGT 59.172 39.130 20.06 19.30 0.00 2.66
2193 2284 4.082625 TCACATTACTCCATTGCTGCAAAG 60.083 41.667 20.06 14.96 0.00 2.77
2377 2468 6.910536 AAAATAGAGTAAGCATCAACTCCG 57.089 37.500 0.00 0.00 42.56 4.63
2550 2646 5.350365 GTGACAAGCATGCAAATCATTTCAT 59.650 36.000 21.98 0.00 31.79 2.57
2602 2698 9.825706 ATTTCCCTTTCCTATACTACCTAGTAG 57.174 37.037 0.23 0.23 41.62 2.57
2604 2700 9.825706 CTATTTCCCTTTCCTATACTACCTAGT 57.174 37.037 0.00 0.00 40.24 2.57
2624 2720 5.288712 TGAGATTTCAGAACGTCGCTATTTC 59.711 40.000 0.00 0.00 0.00 2.17
2630 2726 3.059868 TGTTTGAGATTTCAGAACGTCGC 60.060 43.478 0.00 0.00 34.15 5.19
2638 2734 9.604626 GACAGAATTACTTGTTTGAGATTTCAG 57.395 33.333 0.00 0.00 34.15 3.02
2660 2756 6.472887 TGAAACCTAATACCTCCAAAGACAG 58.527 40.000 0.00 0.00 0.00 3.51
2897 3191 5.078411 AGTGTCCTCATGTAACAGATGTC 57.922 43.478 0.00 0.00 0.00 3.06
3017 3311 2.174854 AGCTGTGGAAAGTAGTGGGTTT 59.825 45.455 0.00 0.00 0.00 3.27
3034 3328 3.567164 AGAGTTCCACAAATGACAAGCTG 59.433 43.478 0.00 0.00 0.00 4.24
3064 3389 1.981533 GCGCTGCAACTGAATCTTTTC 59.018 47.619 0.00 0.00 0.00 2.29
3213 3580 2.016318 TGAACCAAATATCTGCAGCGG 58.984 47.619 9.47 4.80 0.00 5.52
3624 3993 0.107508 AGGTCGATGGACAATGCAGG 60.108 55.000 10.22 0.00 45.28 4.85
3804 4213 7.851508 TCGAGTAGAAGTTCAAATTGAGTTTG 58.148 34.615 5.50 0.00 46.86 2.93
3810 4219 5.577164 ACCGATCGAGTAGAAGTTCAAATTG 59.423 40.000 18.66 0.00 0.00 2.32
3811 4220 5.721232 ACCGATCGAGTAGAAGTTCAAATT 58.279 37.500 18.66 0.00 0.00 1.82
3831 4240 2.754472 TGCAGATATCCAATTCGACCG 58.246 47.619 0.00 0.00 0.00 4.79
4049 4507 6.819284 AGCTTCTTCCACATTCAAATTCAAA 58.181 32.000 0.00 0.00 0.00 2.69
4051 4509 7.707624 ATAGCTTCTTCCACATTCAAATTCA 57.292 32.000 0.00 0.00 0.00 2.57
4052 4510 8.246180 TCAATAGCTTCTTCCACATTCAAATTC 58.754 33.333 0.00 0.00 0.00 2.17
4053 4511 8.125978 TCAATAGCTTCTTCCACATTCAAATT 57.874 30.769 0.00 0.00 0.00 1.82
4054 4512 7.707624 TCAATAGCTTCTTCCACATTCAAAT 57.292 32.000 0.00 0.00 0.00 2.32
4109 4578 8.788325 ATTTAACTACCTACTCCACATTCAAC 57.212 34.615 0.00 0.00 0.00 3.18
4223 4784 4.677182 AGCACCTTAGTCATGGGAAAATT 58.323 39.130 0.00 0.00 0.00 1.82
4224 4785 4.273318 GAGCACCTTAGTCATGGGAAAAT 58.727 43.478 0.00 0.00 0.00 1.82
4243 4806 4.809673 CCACCTGAATAAACAAAAGGAGC 58.190 43.478 0.00 0.00 0.00 4.70
4246 4809 3.254657 TCGCCACCTGAATAAACAAAAGG 59.745 43.478 0.00 0.00 0.00 3.11
4313 4876 0.178903 TCAGGGCCCTCAACACTACT 60.179 55.000 25.77 0.00 0.00 2.57
4370 4933 5.886609 TCAAACATAATCAACCCTCCTTGA 58.113 37.500 0.00 0.00 34.65 3.02
4494 5057 4.927978 AGACACGAAGAATCCTATCCAG 57.072 45.455 0.00 0.00 0.00 3.86
4538 5101 6.892658 ACTGGCAAAAGTACATGAATGTAA 57.107 33.333 0.00 0.00 44.11 2.41
4598 5226 2.097036 TCCTGCATGGAAGCATGAAAG 58.903 47.619 0.00 0.00 44.68 2.62
4600 5228 1.282738 TCTCCTGCATGGAAGCATGAA 59.717 47.619 0.00 0.00 45.63 2.57
4632 5260 4.916041 TGTGATGGTGAGAAGGATCTTT 57.084 40.909 0.00 0.00 35.54 2.52
4710 5338 2.342650 CGAACCAACAGGGCATGGG 61.343 63.158 3.46 0.00 41.17 4.00
4728 5356 1.152673 GGTGGGGCATTCCTCCATC 60.153 63.158 6.30 0.00 39.56 3.51
4911 5539 1.478510 ACGAGACCAAGGCAGTAGATG 59.521 52.381 0.00 0.00 0.00 2.90
4953 5581 2.829023 ACCGGGATAAAGAGACCAGAA 58.171 47.619 6.32 0.00 0.00 3.02
5034 5662 0.745845 CAAAGAGGCCAGGGTCGATG 60.746 60.000 5.01 0.00 0.00 3.84
5286 5914 4.321974 CCAGACACAACATCACTAGCTACA 60.322 45.833 0.00 0.00 0.00 2.74
5765 6393 6.323739 GGGGCATGTATGGTTATTATTATGGG 59.676 42.308 0.00 0.00 0.00 4.00
5768 6396 7.938686 TCTGGGGCATGTATGGTTATTATTAT 58.061 34.615 0.00 0.00 0.00 1.28
5769 6397 7.336475 TCTGGGGCATGTATGGTTATTATTA 57.664 36.000 0.00 0.00 0.00 0.98
5770 6398 6.212840 TCTGGGGCATGTATGGTTATTATT 57.787 37.500 0.00 0.00 0.00 1.40
5777 6408 0.773644 GGATCTGGGGCATGTATGGT 59.226 55.000 0.00 0.00 0.00 3.55
5830 6463 6.013898 ACAGCTGCAGTATGAACCTCATATAT 60.014 38.462 22.76 0.00 40.97 0.86
5831 6464 5.305386 ACAGCTGCAGTATGAACCTCATATA 59.695 40.000 22.76 0.00 40.97 0.86
5838 6471 3.806521 CAGATACAGCTGCAGTATGAACC 59.193 47.826 20.38 7.73 39.69 3.62
5914 6549 4.891756 CCCAACAATAGGAAATCTCTGCAT 59.108 41.667 0.00 0.00 0.00 3.96
6006 6641 2.415625 GCCTGCTGATTTTGCTTCTCAG 60.416 50.000 0.00 0.00 39.50 3.35
6073 6708 7.223260 TGATTATTCCATGATCCAATGAAGC 57.777 36.000 0.00 0.00 0.00 3.86
6116 6751 4.419282 TGATTGGGGAATCAGCTCTTTTT 58.581 39.130 0.00 0.00 34.50 1.94
6117 6752 4.021916 CTGATTGGGGAATCAGCTCTTTT 58.978 43.478 10.92 0.00 46.46 2.27
6162 6799 3.735746 GGATTGTTTGTTACACAAGCTGC 59.264 43.478 4.46 0.00 39.53 5.25
6167 6834 5.690865 AGGAGAGGATTGTTTGTTACACAA 58.309 37.500 0.00 0.00 38.49 3.33
6172 6839 5.935945 TGACAAGGAGAGGATTGTTTGTTA 58.064 37.500 0.00 0.00 39.66 2.41
6173 6840 4.792068 TGACAAGGAGAGGATTGTTTGTT 58.208 39.130 0.00 0.00 39.66 2.83
6174 6841 4.141390 ACTGACAAGGAGAGGATTGTTTGT 60.141 41.667 0.00 0.00 39.66 2.83
6175 6842 4.392940 ACTGACAAGGAGAGGATTGTTTG 58.607 43.478 0.00 0.00 39.66 2.93
6216 6894 4.510711 GGTGCATATGAGAAGATGTGTGAG 59.489 45.833 6.97 0.00 0.00 3.51
6279 6957 8.934825 GTTCAGAAATCTCTATGGATAGCATTC 58.065 37.037 0.00 0.00 0.00 2.67
6280 6958 8.435187 TGTTCAGAAATCTCTATGGATAGCATT 58.565 33.333 0.00 0.00 0.00 3.56
6294 6972 5.865552 CGGCATCAATTTTGTTCAGAAATCT 59.134 36.000 0.00 0.00 0.00 2.40
6298 6976 4.037327 TGTCGGCATCAATTTTGTTCAGAA 59.963 37.500 0.00 0.00 0.00 3.02
6346 7024 4.866486 GCATTTCCTTGGTCATGAATGAAC 59.134 41.667 0.00 1.19 44.66 3.18
6447 7125 1.200948 GATCCTGCTGCAAGAACCAAC 59.799 52.381 4.87 0.00 34.07 3.77
6749 7440 7.327214 AGGAGTTTGTGCATAAAGTTCAAAAA 58.673 30.769 20.48 0.00 31.45 1.94
6750 7441 6.872920 AGGAGTTTGTGCATAAAGTTCAAAA 58.127 32.000 20.48 0.00 31.45 2.44
6751 7442 6.096141 TGAGGAGTTTGTGCATAAAGTTCAAA 59.904 34.615 20.48 8.25 0.00 2.69
6752 7443 5.592282 TGAGGAGTTTGTGCATAAAGTTCAA 59.408 36.000 20.48 8.53 0.00 2.69
6753 7444 5.129634 TGAGGAGTTTGTGCATAAAGTTCA 58.870 37.500 20.48 15.97 0.00 3.18
6910 7619 5.523552 CGTTGTATCCATACACATGTCATGT 59.476 40.000 12.87 12.87 46.22 3.21
6911 7620 5.752955 TCGTTGTATCCATACACATGTCATG 59.247 40.000 11.41 11.41 42.48 3.07
6912 7621 5.912892 TCGTTGTATCCATACACATGTCAT 58.087 37.500 0.00 0.00 42.48 3.06
6913 7622 5.331876 TCGTTGTATCCATACACATGTCA 57.668 39.130 0.00 0.00 42.48 3.58
6914 7623 6.257849 ACATTCGTTGTATCCATACACATGTC 59.742 38.462 0.00 0.00 42.48 3.06
6952 7668 4.564613 CCTTCCCCTTTTCTCTCTCAACTC 60.565 50.000 0.00 0.00 0.00 3.01
6953 7669 3.329225 CCTTCCCCTTTTCTCTCTCAACT 59.671 47.826 0.00 0.00 0.00 3.16
6954 7670 3.328050 TCCTTCCCCTTTTCTCTCTCAAC 59.672 47.826 0.00 0.00 0.00 3.18
6962 7678 2.450886 ACCACAATCCTTCCCCTTTTCT 59.549 45.455 0.00 0.00 0.00 2.52
6963 7682 2.562738 CACCACAATCCTTCCCCTTTTC 59.437 50.000 0.00 0.00 0.00 2.29
6968 7687 0.324645 ATGCACCACAATCCTTCCCC 60.325 55.000 0.00 0.00 0.00 4.81
6979 7698 0.314935 CTCCCACACAAATGCACCAC 59.685 55.000 0.00 0.00 0.00 4.16
6985 7704 0.251297 TGCCTCCTCCCACACAAATG 60.251 55.000 0.00 0.00 0.00 2.32
6988 7707 1.379916 CATGCCTCCTCCCACACAA 59.620 57.895 0.00 0.00 0.00 3.33
6989 7708 0.546507 TACATGCCTCCTCCCACACA 60.547 55.000 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.