Multiple sequence alignment - TraesCS2A01G309200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G309200 chr2A 100.000 7800 0 0 1 7800 532349826 532342027 0.000000e+00 14404.0
1 TraesCS2A01G309200 chr2A 100.000 29 0 0 6128 6156 510073329 510073357 4.000000e-03 54.7
2 TraesCS2A01G309200 chr2B 96.387 3211 82 21 2286 5469 466166427 466163224 0.000000e+00 5256.0
3 TraesCS2A01G309200 chr2B 93.538 2244 104 28 1 2236 466168960 466166750 0.000000e+00 3302.0
4 TraesCS2A01G309200 chr2B 93.761 1138 31 21 6284 7416 466162224 466161122 0.000000e+00 1672.0
5 TraesCS2A01G309200 chr2B 94.805 770 23 6 5531 6291 466163045 466162284 0.000000e+00 1184.0
6 TraesCS2A01G309200 chr2B 93.333 180 11 1 3759 3937 121669521 121669700 1.670000e-66 265.0
7 TraesCS2A01G309200 chr2B 91.710 193 13 3 3759 3950 314778890 314779080 1.670000e-66 265.0
8 TraesCS2A01G309200 chr2B 90.863 197 13 5 3759 3951 421714360 421714165 7.760000e-65 259.0
9 TraesCS2A01G309200 chr2B 91.534 189 11 5 3756 3942 265221504 265221319 1.000000e-63 255.0
10 TraesCS2A01G309200 chr2B 77.682 233 25 21 3390 3622 514855347 514855142 4.950000e-22 117.0
11 TraesCS2A01G309200 chr2D 95.890 2555 72 20 1334 3872 394527261 394524724 0.000000e+00 4106.0
12 TraesCS2A01G309200 chr2D 96.855 1526 37 3 3908 5422 394524725 394523200 0.000000e+00 2542.0
13 TraesCS2A01G309200 chr2D 92.075 1552 48 29 6284 7800 394522156 394520645 0.000000e+00 2115.0
14 TraesCS2A01G309200 chr2D 95.386 997 28 8 5300 6291 394523199 394522216 0.000000e+00 1570.0
15 TraesCS2A01G309200 chr2D 92.643 367 22 5 1 364 394528471 394528107 2.490000e-144 523.0
16 TraesCS2A01G309200 chr2D 94.585 277 9 2 420 691 394528108 394527833 2.600000e-114 424.0
17 TraesCS2A01G309200 chrUn 91.710 193 13 3 3759 3950 277314224 277314034 1.670000e-66 265.0
18 TraesCS2A01G309200 chr4A 91.935 186 13 2 3759 3943 673448023 673447839 7.760000e-65 259.0
19 TraesCS2A01G309200 chr7B 91.489 188 14 2 3759 3945 198551244 198551058 2.790000e-64 257.0
20 TraesCS2A01G309200 chr7B 87.097 62 7 1 3400 3461 567594885 567594825 1.400000e-07 69.4
21 TraesCS2A01G309200 chr7B 85.965 57 2 2 5473 5523 453119387 453119331 1.000000e-03 56.5
22 TraesCS2A01G309200 chr7B 90.476 42 3 1 3386 3427 608217245 608217205 4.000000e-03 54.7
23 TraesCS2A01G309200 chr1B 88.732 213 15 8 3759 3965 230141562 230141353 1.300000e-62 252.0
24 TraesCS2A01G309200 chr1B 90.476 42 4 0 3567 3608 420358757 420358716 1.000000e-03 56.5
25 TraesCS2A01G309200 chr1B 100.000 28 0 0 6128 6155 558050618 558050591 1.400000e-02 52.8
26 TraesCS2A01G309200 chr6D 80.795 151 21 6 3479 3627 218411205 218411349 2.300000e-20 111.0
27 TraesCS2A01G309200 chr6A 79.866 149 20 7 3482 3627 297651613 297651754 4.980000e-17 100.0
28 TraesCS2A01G309200 chr6A 100.000 29 0 0 6127 6155 121079393 121079365 4.000000e-03 54.7
29 TraesCS2A01G309200 chr5B 94.643 56 3 0 3390 3445 287436435 287436490 3.880000e-13 87.9
30 TraesCS2A01G309200 chr3D 85.393 89 5 6 3405 3489 694170 694086 1.390000e-12 86.1
31 TraesCS2A01G309200 chr6B 89.231 65 7 0 3401 3465 72387057 72387121 1.800000e-11 82.4
32 TraesCS2A01G309200 chr5D 74.786 234 28 20 3390 3622 30806094 30805891 8.390000e-10 76.8
33 TraesCS2A01G309200 chr7D 100.000 28 0 0 6128 6155 617060394 617060421 1.400000e-02 52.8
34 TraesCS2A01G309200 chr7A 100.000 28 0 0 6128 6155 47513032 47513059 1.400000e-02 52.8
35 TraesCS2A01G309200 chr3A 100.000 28 0 0 6128 6155 6785095 6785122 1.400000e-02 52.8
36 TraesCS2A01G309200 chr3A 100.000 28 0 0 6128 6155 367775866 367775893 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G309200 chr2A 532342027 532349826 7799 True 14404.0 14404 100.000000 1 7800 1 chr2A.!!$R1 7799
1 TraesCS2A01G309200 chr2B 466161122 466168960 7838 True 2853.5 5256 94.622750 1 7416 4 chr2B.!!$R4 7415
2 TraesCS2A01G309200 chr2D 394520645 394528471 7826 True 1880.0 4106 94.572333 1 7800 6 chr2D.!!$R1 7799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 784 0.038310 GCCAGCACCCCTAAAGTTCT 59.962 55.000 0.00 0.0 0.00 3.01 F
1778 1822 1.004918 GCGGTGTAGCTGGTTCACT 60.005 57.895 14.67 0.0 33.30 3.41 F
2423 2747 1.765904 TGACAGTTTGGAGGTAGCACA 59.234 47.619 0.00 0.0 0.00 4.57 F
3272 3598 3.878160 TCACACGGTATGCACAAGATA 57.122 42.857 0.00 0.0 0.00 1.98 F
3767 4097 0.978146 ACTGCCGATAGAGCCTTGGT 60.978 55.000 0.00 0.0 39.76 3.67 F
3894 4226 2.183679 GTCAGACCCTTCTCATGACCT 58.816 52.381 0.00 0.0 35.37 3.85 F
4384 4723 3.107601 CTCAGTGAGGGAAGGATTGGTA 58.892 50.000 12.67 0.0 0.00 3.25 F
4769 5124 3.185188 GTGAGATGCCAAGTATATGCACG 59.815 47.826 0.00 0.0 37.92 5.34 F
6154 6759 1.458398 TGATACCCCGCATGTTGTTG 58.542 50.000 0.00 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2382 2706 4.464597 TCATAAAATTTGGGTGGCACTACC 59.535 41.667 18.45 11.76 40.10 3.18 R
3688 4018 0.519519 CAGCGCCGGTTTGTGATTAA 59.480 50.000 2.29 0.00 0.00 1.40 R
3704 4034 0.994995 CGATCGCATGGTATAGCAGC 59.005 55.000 10.82 12.23 0.00 5.25 R
4607 4946 1.277842 TCGCCTTCAAGCATACTTCCA 59.722 47.619 0.00 0.00 32.29 3.53 R
4841 5196 1.954382 GTCCAAGGTCAGTGAAAACCC 59.046 52.381 0.00 0.00 36.11 4.11 R
5876 6481 0.255890 CCCGGAATCTCAACATGGGT 59.744 55.000 0.73 0.00 0.00 4.51 R
6144 6749 0.576328 CCGCAACAACAACAACATGC 59.424 50.000 0.00 0.00 0.00 4.06 R
6156 6761 0.749649 AGCAACCAATTTCCGCAACA 59.250 45.000 0.00 0.00 0.00 3.33 R
7173 7850 0.039618 CCCCTTGTGCCCTGTACAAT 59.960 55.000 0.00 0.00 37.49 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.493950 GGATTGAGCCGCGACATCAG 61.494 60.000 8.23 0.00 0.00 2.90
48 49 0.475632 ATCAGTGGTCAGGGTTGGGA 60.476 55.000 0.00 0.00 0.00 4.37
83 84 9.825972 CTTTCGTATCATTGTCTTGTTTTATGT 57.174 29.630 0.00 0.00 0.00 2.29
95 96 4.688511 TGTTTTATGTGGCGGATTACAC 57.311 40.909 0.00 0.00 38.08 2.90
167 168 3.411415 ACAGATGCGCTCTTTTATTGC 57.589 42.857 9.73 0.00 29.16 3.56
176 177 3.425625 CGCTCTTTTATTGCGGCTTTACA 60.426 43.478 0.00 0.00 45.07 2.41
197 198 3.071457 CAGAAATTTGGGCCTTTTGACCT 59.929 43.478 4.53 0.00 0.00 3.85
216 217 7.406031 TGACCTACCTTGAGTTGAATAGTAG 57.594 40.000 0.00 0.00 0.00 2.57
242 243 0.904649 ACGAGAATGAGTGCCATCCA 59.095 50.000 0.00 0.00 33.53 3.41
243 244 1.293924 CGAGAATGAGTGCCATCCAC 58.706 55.000 0.00 0.00 45.01 4.02
284 285 5.947503 TGTATTTGCAATCATAAAAGCGC 57.052 34.783 0.00 0.00 0.00 5.92
287 288 2.172593 TGCAATCATAAAAGCGCGAC 57.827 45.000 12.10 0.04 0.00 5.19
296 298 8.432359 CAATCATAAAAGCGCGACTATGTATAA 58.568 33.333 12.10 6.47 0.00 0.98
360 364 6.428159 GCACATAATCTCCGGTCATCTAAAAT 59.572 38.462 0.00 0.00 0.00 1.82
372 376 6.963242 CGGTCATCTAAAATGTGTGATTCTTG 59.037 38.462 0.00 0.00 0.00 3.02
375 379 8.506437 GTCATCTAAAATGTGTGATTCTTGTGA 58.494 33.333 0.00 0.00 0.00 3.58
389 393 5.514274 TTCTTGTGAAATTGTTGGAGGAC 57.486 39.130 0.00 0.00 0.00 3.85
406 410 6.779860 TGGAGGACAAAACTAGATTAAGCTT 58.220 36.000 3.48 3.48 0.00 3.74
407 411 6.879458 TGGAGGACAAAACTAGATTAAGCTTC 59.121 38.462 0.00 0.00 0.00 3.86
553 562 2.653890 GTGTGCGTCGTGTCTAAGTTA 58.346 47.619 0.00 0.00 0.00 2.24
649 659 1.079127 ATTCCTTGACTCGGGTGCG 60.079 57.895 0.00 0.00 0.00 5.34
735 776 2.296945 TTTTCACTGCCAGCACCCCT 62.297 55.000 0.00 0.00 0.00 4.79
736 777 1.422977 TTTCACTGCCAGCACCCCTA 61.423 55.000 0.00 0.00 0.00 3.53
743 784 0.038310 GCCAGCACCCCTAAAGTTCT 59.962 55.000 0.00 0.00 0.00 3.01
765 806 6.982852 TCTCAGAAATTACGTCTCTGAAAGT 58.017 36.000 15.93 0.00 43.69 2.66
775 816 2.662156 GTCTCTGAAAGTAGCGAAACCG 59.338 50.000 0.00 0.00 33.76 4.44
814 855 2.204059 AGCAGGGACTCCAGGCTT 60.204 61.111 6.85 0.00 41.24 4.35
829 870 5.606505 TCCAGGCTTAATTTTTCAACAACC 58.393 37.500 0.00 0.00 0.00 3.77
830 871 4.754618 CCAGGCTTAATTTTTCAACAACCC 59.245 41.667 0.00 0.00 0.00 4.11
833 874 4.513692 GGCTTAATTTTTCAACAACCCACC 59.486 41.667 0.00 0.00 0.00 4.61
963 1005 4.292178 CATCTCGGCGGCTCCCTC 62.292 72.222 7.21 0.00 0.00 4.30
1222 1264 2.046285 CCAATGGTGAGAACGCCCC 61.046 63.158 0.00 0.00 45.20 5.80
1224 1266 2.534396 AATGGTGAGAACGCCCCCA 61.534 57.895 0.00 0.00 45.20 4.96
1227 1269 2.668550 GTGAGAACGCCCCCACAC 60.669 66.667 0.00 0.00 0.00 3.82
1228 1270 3.164977 TGAGAACGCCCCCACACA 61.165 61.111 0.00 0.00 0.00 3.72
1229 1271 2.668550 GAGAACGCCCCCACACAC 60.669 66.667 0.00 0.00 0.00 3.82
1239 1281 1.536676 CCCACACACCCCAGAAACT 59.463 57.895 0.00 0.00 0.00 2.66
1250 1292 2.231235 CCCCAGAAACTTCGATTTTGGG 59.769 50.000 15.67 15.67 38.40 4.12
1252 1294 3.305335 CCCAGAAACTTCGATTTTGGGTG 60.305 47.826 14.77 3.51 36.34 4.61
1264 1306 4.954118 TGGGTGGAGGAGGCGTGT 62.954 66.667 0.00 0.00 0.00 4.49
1265 1307 3.637273 GGGTGGAGGAGGCGTGTT 61.637 66.667 0.00 0.00 0.00 3.32
1266 1308 2.358737 GGTGGAGGAGGCGTGTTG 60.359 66.667 0.00 0.00 0.00 3.33
1307 1349 6.460537 GGTTTTAGAGCGGTTTATTATTGGGG 60.461 42.308 0.00 0.00 0.00 4.96
1473 1517 7.537596 TTGTGCTGATTATTATAATTGGGGG 57.462 36.000 2.68 0.00 0.00 5.40
1630 1674 5.769662 TGATGTACTGTGAAAAGAAAGGCAT 59.230 36.000 0.00 0.00 0.00 4.40
1691 1735 2.225727 CCAAGGGCGTTCTTAGTTGTTC 59.774 50.000 0.00 0.00 0.00 3.18
1695 1739 2.137523 GGCGTTCTTAGTTGTTCGGAA 58.862 47.619 0.00 0.00 0.00 4.30
1696 1740 2.096565 GGCGTTCTTAGTTGTTCGGAAC 60.097 50.000 13.86 13.86 34.69 3.62
1697 1741 2.798847 GCGTTCTTAGTTGTTCGGAACT 59.201 45.455 20.53 4.36 39.54 3.01
1724 1768 8.594550 ACTAGTAGAGTATGCAAGGAAAAAGAA 58.405 33.333 3.59 0.00 36.27 2.52
1744 1788 6.627087 AGAAAAGATACACCAAGGATCTCA 57.373 37.500 0.00 0.00 0.00 3.27
1778 1822 1.004918 GCGGTGTAGCTGGTTCACT 60.005 57.895 14.67 0.00 33.30 3.41
2020 2064 7.826690 AGCCAACTGTACAATTTATTTGGTAG 58.173 34.615 0.00 0.00 39.80 3.18
2096 2140 2.557317 CACACCGACCTTGTAACTTGT 58.443 47.619 0.00 0.00 0.00 3.16
2318 2635 9.421806 CTGATTTGTTATCTTGCCAAATTTACA 57.578 29.630 0.00 0.00 38.53 2.41
2354 2678 2.205022 TGGGACCAATCAAGCAGAAG 57.795 50.000 0.00 0.00 0.00 2.85
2382 2706 8.823818 ACGTTACTGGATTTATTAAATTCCTCG 58.176 33.333 5.21 5.60 36.50 4.63
2423 2747 1.765904 TGACAGTTTGGAGGTAGCACA 59.234 47.619 0.00 0.00 0.00 4.57
2538 2863 6.929049 TGTGGATGTATTTATCGGAGAATGAC 59.071 38.462 0.00 0.00 43.58 3.06
2727 3053 5.069648 TGTTGGATTGCCTAATTTTGTGTCA 59.930 36.000 0.00 0.00 34.31 3.58
3118 3444 4.225942 TCCAGCAAACACAGAATATCTCCT 59.774 41.667 0.00 0.00 0.00 3.69
3272 3598 3.878160 TCACACGGTATGCACAAGATA 57.122 42.857 0.00 0.00 0.00 1.98
3419 3747 7.151976 CCTCCGTTCCAAATTATTTGAAGTTT 58.848 34.615 18.13 0.00 43.26 2.66
3465 3793 7.661847 ACTTCTTTAGGTTTGACCAAGTCTATG 59.338 37.037 0.00 0.00 41.95 2.23
3594 3924 9.905713 ATTAGCACATTTTTCTATAGACTTGGA 57.094 29.630 0.67 0.00 0.00 3.53
3624 3954 9.847224 TTATAAAGAAGTTTGACTTTGGAGACT 57.153 29.630 0.00 0.00 38.80 3.24
3688 4018 6.294731 GCTGAAAACTATTTTCCAGTGGATGT 60.295 38.462 14.00 4.72 46.49 3.06
3704 4034 2.477189 GGATGTTAATCACAAACCGGCG 60.477 50.000 0.00 0.00 39.50 6.46
3732 4062 1.606668 ACCATGCGATCGTTTGTGTTT 59.393 42.857 17.81 0.00 0.00 2.83
3767 4097 0.978146 ACTGCCGATAGAGCCTTGGT 60.978 55.000 0.00 0.00 39.76 3.67
3894 4226 2.183679 GTCAGACCCTTCTCATGACCT 58.816 52.381 0.00 0.00 35.37 3.85
3895 4227 3.366396 GTCAGACCCTTCTCATGACCTA 58.634 50.000 0.00 0.00 35.37 3.08
4011 4346 9.407380 TCAGCTTCATATTAACCATGTAACAAT 57.593 29.630 0.00 0.00 0.00 2.71
4071 4406 3.489416 TCTTCGTTGTTGTTCATCTGTCG 59.511 43.478 0.00 0.00 0.00 4.35
4074 4409 4.552355 TCGTTGTTGTTCATCTGTCGTAT 58.448 39.130 0.00 0.00 0.00 3.06
4075 4410 4.384547 TCGTTGTTGTTCATCTGTCGTATG 59.615 41.667 0.00 0.00 0.00 2.39
4231 4568 6.775142 TCCTATGAATTTTCTTCCAACACACA 59.225 34.615 0.00 0.00 0.00 3.72
4232 4569 6.863126 CCTATGAATTTTCTTCCAACACACAC 59.137 38.462 0.00 0.00 0.00 3.82
4319 4656 3.935203 CACGTAGCCAACTTCTGATGAAT 59.065 43.478 0.00 0.00 0.00 2.57
4384 4723 3.107601 CTCAGTGAGGGAAGGATTGGTA 58.892 50.000 12.67 0.00 0.00 3.25
4436 4775 4.431416 TGTGGATCCAACTACAAACAGT 57.569 40.909 18.20 0.00 0.00 3.55
4607 4946 7.545965 CAGTCTTTCCAAGTTCATCGTAGTTAT 59.454 37.037 0.00 0.00 0.00 1.89
4769 5124 3.185188 GTGAGATGCCAAGTATATGCACG 59.815 47.826 0.00 0.00 37.92 5.34
4771 5126 3.393800 AGATGCCAAGTATATGCACGTC 58.606 45.455 0.00 0.00 37.92 4.34
4779 5134 6.346919 GCCAAGTATATGCACGTCTAATTCAG 60.347 42.308 0.00 0.00 0.00 3.02
4837 5192 4.470462 CTGTGTTAGTCAGATTTGCTTGC 58.530 43.478 0.00 0.00 35.20 4.01
4841 5196 4.388773 TGTTAGTCAGATTTGCTTGCTACG 59.611 41.667 0.00 0.00 0.00 3.51
4908 5263 5.310594 TGAAGGAAATCCATATCTACTGGGG 59.689 44.000 1.67 0.00 38.89 4.96
4970 5325 4.380843 TCCTGGCTTTCAAGAATGGTAA 57.619 40.909 0.00 0.00 0.00 2.85
5368 5849 6.681729 TGGAACTACTTGATCCTAGTTGTT 57.318 37.500 18.00 18.00 41.79 2.83
5471 5952 7.459795 TGTATGAAGAAACCAATTATGCACA 57.540 32.000 0.00 0.00 0.00 4.57
5522 6003 7.928307 TTTTGATATTTTGAGACAGAGGGAG 57.072 36.000 0.00 0.00 0.00 4.30
5523 6004 5.028549 TGATATTTTGAGACAGAGGGAGC 57.971 43.478 0.00 0.00 0.00 4.70
5723 6324 9.502091 TTGATGGTATACAGATATTACCAAAGC 57.498 33.333 5.01 2.49 43.11 3.51
5876 6481 6.213397 TCCAGATTGACAGAAGTGGAAAGATA 59.787 38.462 0.00 0.00 31.08 1.98
5924 6529 6.983307 GTGAGTCATATGCACAGAATAAGACT 59.017 38.462 0.00 3.27 39.82 3.24
6089 6694 9.836076 GTTTACATGTTTGGTAAGTAATTCCTC 57.164 33.333 2.30 0.00 32.76 3.71
6111 6716 4.096081 TCCAACACCGTTTCACGTATTTTT 59.904 37.500 0.00 0.00 40.58 1.94
6144 6749 2.368875 AGGCAAACTAGATGATACCCCG 59.631 50.000 0.00 0.00 0.00 5.73
6152 6757 1.490490 AGATGATACCCCGCATGTTGT 59.510 47.619 0.00 0.00 0.00 3.32
6153 6758 2.092429 AGATGATACCCCGCATGTTGTT 60.092 45.455 0.00 0.00 0.00 2.83
6154 6759 1.458398 TGATACCCCGCATGTTGTTG 58.542 50.000 0.00 0.00 0.00 3.33
6155 6760 1.271652 TGATACCCCGCATGTTGTTGT 60.272 47.619 0.00 0.00 0.00 3.32
6156 6761 1.816224 GATACCCCGCATGTTGTTGTT 59.184 47.619 0.00 0.00 0.00 2.83
6157 6762 0.955178 TACCCCGCATGTTGTTGTTG 59.045 50.000 0.00 0.00 0.00 3.33
6183 6788 7.283625 TGCGGAAATTGGTTGCTATATATTT 57.716 32.000 0.00 0.00 0.00 1.40
6290 6964 2.949177 TGGTAGCATGTTGAAGTGGT 57.051 45.000 0.00 0.00 0.00 4.16
6302 6976 1.280457 GAAGTGGTGGGGATCACTCT 58.720 55.000 0.00 0.00 45.38 3.24
6307 6981 1.033574 GGTGGGGATCACTCTCGTAG 58.966 60.000 0.00 0.00 45.38 3.51
6319 6993 8.995220 GGATCACTCTCGTAGGTATATATGATC 58.005 40.741 0.00 0.00 38.53 2.92
6322 6996 8.541234 TCACTCTCGTAGGTATATATGATCAGT 58.459 37.037 0.09 0.00 0.00 3.41
6411 7086 2.726832 ACTACAAGCTGAAGTCCGTC 57.273 50.000 0.00 0.00 0.00 4.79
6572 7247 5.528690 GCTGATAGCAGTGGACATTTTATCA 59.471 40.000 10.15 0.00 44.17 2.15
6607 7282 3.821033 GCTAACTGACCATTTCCTGTTGT 59.179 43.478 0.00 0.00 0.00 3.32
6609 7284 4.918810 AACTGACCATTTCCTGTTGTTC 57.081 40.909 0.00 0.00 0.00 3.18
6806 7481 2.334023 AGAAGACAAAGTGAGCCTCCT 58.666 47.619 0.00 0.00 0.00 3.69
6843 7518 1.374631 GACACATCTCGGCAGCACA 60.375 57.895 0.00 0.00 0.00 4.57
6893 7568 1.163420 TGTGTGCCAAATTCGACGCT 61.163 50.000 0.00 0.00 0.00 5.07
6894 7569 0.725784 GTGTGCCAAATTCGACGCTG 60.726 55.000 0.00 0.00 0.00 5.18
6895 7570 0.882484 TGTGCCAAATTCGACGCTGA 60.882 50.000 0.00 0.00 0.00 4.26
6976 7651 1.561717 GCGCGTGGACACAATACACA 61.562 55.000 8.43 0.00 34.91 3.72
6977 7652 1.075542 CGCGTGGACACAATACACAT 58.924 50.000 0.00 0.00 34.91 3.21
7173 7850 5.359576 GTGGGCATTATTCAGATTTGGTGTA 59.640 40.000 0.00 0.00 0.00 2.90
7266 7944 2.743928 CGGGAGTTGACTGCAGCC 60.744 66.667 15.27 2.30 35.89 4.85
7270 7948 1.739562 GAGTTGACTGCAGCCCGAG 60.740 63.158 15.27 0.00 0.00 4.63
7299 7977 0.935898 GCGTGGATTGATCAGCAGAG 59.064 55.000 0.00 0.00 0.00 3.35
7322 8000 3.046087 CACTGGCACTGGCACTCG 61.046 66.667 0.07 0.00 43.71 4.18
7380 8059 0.905337 GCTAGGTGGGTGGAGAGTGT 60.905 60.000 0.00 0.00 0.00 3.55
7381 8060 1.618888 GCTAGGTGGGTGGAGAGTGTA 60.619 57.143 0.00 0.00 0.00 2.90
7382 8061 2.379972 CTAGGTGGGTGGAGAGTGTAG 58.620 57.143 0.00 0.00 0.00 2.74
7383 8062 0.487772 AGGTGGGTGGAGAGTGTAGT 59.512 55.000 0.00 0.00 0.00 2.73
7478 8157 2.031420 CGATCTTCCGGCGTTATGTAGA 60.031 50.000 6.01 0.00 0.00 2.59
7508 8189 0.319083 TGCATACTTGGTTCGACGGT 59.681 50.000 0.00 0.00 0.00 4.83
7524 8205 3.072468 GTCGACGGACCCATCCCA 61.072 66.667 0.00 0.00 42.83 4.37
7525 8206 2.042333 TCGACGGACCCATCCCAT 60.042 61.111 0.00 0.00 42.83 4.00
7526 8207 1.111116 GTCGACGGACCCATCCCATA 61.111 60.000 0.00 0.00 42.83 2.74
7527 8208 0.178944 TCGACGGACCCATCCCATAT 60.179 55.000 0.00 0.00 42.83 1.78
7528 8209 0.685097 CGACGGACCCATCCCATATT 59.315 55.000 0.00 0.00 42.83 1.28
7529 8210 1.608025 CGACGGACCCATCCCATATTG 60.608 57.143 0.00 0.00 42.83 1.90
7579 8267 4.223953 AGATATGTTCCTCCCACGTACAT 58.776 43.478 3.59 3.59 34.18 2.29
7660 8349 1.068121 CCTCACCCCCTCAGACTTTT 58.932 55.000 0.00 0.00 0.00 2.27
7674 8363 6.881065 CCTCAGACTTTTGACCTATTCATCAA 59.119 38.462 0.00 0.00 32.84 2.57
7676 8365 7.453393 TCAGACTTTTGACCTATTCATCAACT 58.547 34.615 0.00 0.00 34.61 3.16
7678 8367 7.388776 CAGACTTTTGACCTATTCATCAACTGA 59.611 37.037 0.00 0.00 34.61 3.41
7681 8370 7.173907 ACTTTTGACCTATTCATCAACTGACAG 59.826 37.037 0.00 0.00 34.61 3.51
7689 8398 6.949352 ATTCATCAACTGACAGAACTTGTT 57.051 33.333 10.08 0.00 41.05 2.83
7723 8432 2.084546 GAACACCAGAAATCCCTTCCG 58.915 52.381 0.00 0.00 34.21 4.30
7725 8434 0.322456 CACCAGAAATCCCTTCCGCA 60.322 55.000 0.00 0.00 34.21 5.69
7726 8435 0.625849 ACCAGAAATCCCTTCCGCAT 59.374 50.000 0.00 0.00 34.21 4.73
7731 8440 3.812053 CAGAAATCCCTTCCGCATAGAAG 59.188 47.826 2.00 2.00 42.46 2.85
7735 8444 0.109342 CCCTTCCGCATAGAAGCCAT 59.891 55.000 3.23 0.00 41.65 4.40
7737 8446 0.590195 CTTCCGCATAGAAGCCATGC 59.410 55.000 0.00 0.00 44.31 4.06
7745 8454 4.997565 GCATAGAAGCCATGCAAACTTTA 58.002 39.130 0.00 0.00 46.47 1.85
7782 8491 6.613755 TCGAAAAGTTATTATGCTAAGGCC 57.386 37.500 0.00 0.00 37.74 5.19
7783 8492 5.235616 TCGAAAAGTTATTATGCTAAGGCCG 59.764 40.000 0.00 0.00 37.74 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.633945 AGTTATCCCAACCCTGACCAC 59.366 52.381 0.00 0.00 0.00 4.16
83 84 3.340034 CCACTAAAAGTGTAATCCGCCA 58.660 45.455 6.33 0.00 44.50 5.69
167 168 2.606108 GCCCAAATTTCTGTAAAGCCG 58.394 47.619 0.00 0.00 0.00 5.52
176 177 3.317406 AGGTCAAAAGGCCCAAATTTCT 58.683 40.909 0.00 0.00 0.00 2.52
216 217 3.932710 TGGCACTCATTCTCGTTGTATTC 59.067 43.478 0.00 0.00 0.00 1.75
242 243 4.579869 ACAAAAGATCATGGCTTCTACGT 58.420 39.130 0.00 0.00 0.00 3.57
243 244 6.851222 ATACAAAAGATCATGGCTTCTACG 57.149 37.500 0.00 0.00 0.00 3.51
278 279 3.978687 AGCTTATACATAGTCGCGCTTT 58.021 40.909 5.56 0.00 0.00 3.51
322 326 6.293298 GGAGATTATGTGCAGATTGTCATGTC 60.293 42.308 0.00 0.00 0.00 3.06
323 327 5.530171 GGAGATTATGTGCAGATTGTCATGT 59.470 40.000 0.00 0.00 0.00 3.21
330 334 3.134623 TGACCGGAGATTATGTGCAGATT 59.865 43.478 9.46 0.00 0.00 2.40
360 364 6.041511 CCAACAATTTCACAAGAATCACACA 58.958 36.000 0.00 0.00 32.89 3.72
372 376 5.660460 AGTTTTGTCCTCCAACAATTTCAC 58.340 37.500 0.00 0.00 38.83 3.18
375 379 7.839680 ATCTAGTTTTGTCCTCCAACAATTT 57.160 32.000 0.00 0.00 38.83 1.82
389 393 8.099364 TGAACCTGAAGCTTAATCTAGTTTTG 57.901 34.615 0.00 0.00 0.00 2.44
406 410 4.401022 GGGATATGCATGATTGAACCTGA 58.599 43.478 10.16 0.00 0.00 3.86
407 411 3.189910 CGGGATATGCATGATTGAACCTG 59.810 47.826 10.16 0.00 0.00 4.00
438 442 5.354234 GTGAATGTCGTCTCCACCATTAATT 59.646 40.000 0.00 0.00 0.00 1.40
541 550 6.586868 ACGAGAGAGTATAACTTAGACACG 57.413 41.667 0.00 0.00 0.00 4.49
553 562 6.924629 GTTTGAACGTTAACGAGAGAGTAT 57.075 37.500 33.06 6.33 43.02 2.12
621 631 3.416156 GAGTCAAGGAATCAGCAAGGTT 58.584 45.455 0.00 0.00 0.00 3.50
622 632 2.613977 CGAGTCAAGGAATCAGCAAGGT 60.614 50.000 0.00 0.00 0.00 3.50
624 634 2.005451 CCGAGTCAAGGAATCAGCAAG 58.995 52.381 0.00 0.00 0.00 4.01
625 635 1.339055 CCCGAGTCAAGGAATCAGCAA 60.339 52.381 0.00 0.00 0.00 3.91
649 659 7.116376 GTCTTTAAAGGAAGCAAATTGTTAGGC 59.884 37.037 15.13 0.00 0.00 3.93
735 776 8.573885 TCAGAGACGTAATTTCTGAGAACTTTA 58.426 33.333 14.06 0.00 41.62 1.85
736 777 7.434492 TCAGAGACGTAATTTCTGAGAACTTT 58.566 34.615 14.06 0.00 41.62 2.66
743 784 6.807230 GCTACTTTCAGAGACGTAATTTCTGA 59.193 38.462 14.06 14.06 43.98 3.27
765 806 0.389426 GGACTGCTTCGGTTTCGCTA 60.389 55.000 0.00 0.00 36.13 4.26
814 855 5.593502 ACGTAGGTGGGTTGTTGAAAAATTA 59.406 36.000 0.00 0.00 0.00 1.40
829 870 3.857052 TCTTTTGCAGATACGTAGGTGG 58.143 45.455 0.08 0.00 0.00 4.61
830 871 5.390567 GGTTTCTTTTGCAGATACGTAGGTG 60.391 44.000 0.08 1.91 34.99 4.00
833 874 7.772332 ATAGGTTTCTTTTGCAGATACGTAG 57.228 36.000 0.08 0.00 37.29 3.51
1110 1152 0.662374 ACGCGAAGTACCAGAACACG 60.662 55.000 15.93 0.00 0.00 4.49
1170 1212 2.486472 AGAGGTTGGACATGAGCAAG 57.514 50.000 0.00 0.00 0.00 4.01
1222 1264 1.318576 GAAGTTTCTGGGGTGTGTGG 58.681 55.000 0.00 0.00 0.00 4.17
1224 1266 0.834612 TCGAAGTTTCTGGGGTGTGT 59.165 50.000 0.00 0.00 0.00 3.72
1227 1269 3.305335 CCAAAATCGAAGTTTCTGGGGTG 60.305 47.826 0.00 0.00 0.00 4.61
1228 1270 2.890945 CCAAAATCGAAGTTTCTGGGGT 59.109 45.455 0.00 0.00 0.00 4.95
1229 1271 2.231235 CCCAAAATCGAAGTTTCTGGGG 59.769 50.000 16.25 11.25 36.64 4.96
1235 1277 2.890945 CCTCCACCCAAAATCGAAGTTT 59.109 45.455 0.00 0.00 0.00 2.66
1239 1281 1.004277 CCTCCTCCACCCAAAATCGAA 59.996 52.381 0.00 0.00 0.00 3.71
1250 1292 0.034337 TAACAACACGCCTCCTCCAC 59.966 55.000 0.00 0.00 0.00 4.02
1252 1294 0.391263 CCTAACAACACGCCTCCTCC 60.391 60.000 0.00 0.00 0.00 4.30
1264 1306 3.706600 ACCGCCATAGAAACCTAACAA 57.293 42.857 0.00 0.00 0.00 2.83
1265 1307 3.706600 AACCGCCATAGAAACCTAACA 57.293 42.857 0.00 0.00 0.00 2.41
1266 1308 5.876460 TCTAAAACCGCCATAGAAACCTAAC 59.124 40.000 0.00 0.00 0.00 2.34
1331 1373 1.211969 CCAACAGCACTGCATGAGC 59.788 57.895 3.30 0.00 42.57 4.26
1433 1477 5.130975 TCAGCACAAATACACCCTCTGATAT 59.869 40.000 0.00 0.00 0.00 1.63
1473 1517 5.502606 GCATAAAACCGACTAAATCAGCTC 58.497 41.667 0.00 0.00 0.00 4.09
1630 1674 7.459795 TCATAAAACATCCAACTAACATGCA 57.540 32.000 0.00 0.00 0.00 3.96
1684 1728 6.237154 ACTCTACTAGTAGTTCCGAACAACT 58.763 40.000 25.58 0.00 39.94 3.16
1691 1735 6.293516 CCTTGCATACTCTACTAGTAGTTCCG 60.294 46.154 25.58 16.02 43.90 4.30
1695 1739 8.591114 TTTTCCTTGCATACTCTACTAGTAGT 57.409 34.615 25.58 15.25 43.90 2.73
1696 1740 9.522804 CTTTTTCCTTGCATACTCTACTAGTAG 57.477 37.037 21.87 21.87 43.90 2.57
1697 1741 9.251440 TCTTTTTCCTTGCATACTCTACTAGTA 57.749 33.333 1.89 1.89 44.76 1.82
1724 1768 6.126863 TGTTGAGATCCTTGGTGTATCTTT 57.873 37.500 0.00 0.00 30.19 2.52
1744 1788 5.146010 ACACCGCATAATCCAAAATTGTT 57.854 34.783 0.00 0.00 0.00 2.83
1778 1822 5.022282 TCATCTTCACAACTCACTCAACA 57.978 39.130 0.00 0.00 0.00 3.33
2088 2132 8.208718 TGGAGCAATATGATACAACAAGTTAC 57.791 34.615 0.00 0.00 0.00 2.50
2228 2272 8.767478 TTTACTGAAAACAGGTACTACATAGC 57.233 34.615 0.00 0.00 36.02 2.97
2293 2610 9.941325 ATGTAAATTTGGCAAGATAACAAATCA 57.059 25.926 0.00 0.00 42.21 2.57
2318 2635 5.222007 TGGTCCCATTAAAAATGCCAAACAT 60.222 36.000 0.00 0.00 42.30 2.71
2354 2678 9.117183 AGGAATTTAATAAATCCAGTAACGTCC 57.883 33.333 13.02 7.60 0.00 4.79
2382 2706 4.464597 TCATAAAATTTGGGTGGCACTACC 59.535 41.667 18.45 11.76 40.10 3.18
2538 2863 6.747280 CCTCATTACCAAAGTCGCTAAATTTG 59.253 38.462 0.00 2.91 34.45 2.32
3118 3444 8.020819 CGGTCTTCTGTTAATTGCTTTTTCATA 58.979 33.333 0.00 0.00 0.00 2.15
3334 3660 8.575589 AGATATTAATCACGCCAATGCAATTAA 58.424 29.630 0.00 0.00 31.83 1.40
3339 3665 6.389830 AAAGATATTAATCACGCCAATGCA 57.610 33.333 0.00 0.00 33.86 3.96
3480 3809 7.793902 ACTAACTTTATGTTGTCGATGTTGAC 58.206 34.615 0.00 0.00 39.55 3.18
3688 4018 0.519519 CAGCGCCGGTTTGTGATTAA 59.480 50.000 2.29 0.00 0.00 1.40
3704 4034 0.994995 CGATCGCATGGTATAGCAGC 59.005 55.000 10.82 12.23 0.00 5.25
3732 4062 5.547465 TCGGCAGTTTCAGAAGAATCTTAA 58.453 37.500 0.00 0.00 32.78 1.85
3877 4209 2.393646 GCTAGGTCATGAGAAGGGTCT 58.606 52.381 0.00 0.00 36.55 3.85
3894 4226 3.144871 TAGCTCCCGCTTGCGCTA 61.145 61.111 9.73 0.00 46.47 4.26
3895 4227 4.821589 GTAGCTCCCGCTTGCGCT 62.822 66.667 9.73 3.88 46.47 5.92
3965 4300 5.870433 GCTGAGATGAGAGAATCCACATATG 59.130 44.000 0.00 0.00 33.91 1.78
4011 4346 8.031864 TGAAACTAGAAAGAAACAATTGTGCAA 58.968 29.630 12.82 0.00 0.00 4.08
4607 4946 1.277842 TCGCCTTCAAGCATACTTCCA 59.722 47.619 0.00 0.00 32.29 3.53
4769 5124 6.127619 CCATTTCCAAGGAACCTGAATTAGAC 60.128 42.308 0.00 0.00 33.41 2.59
4771 5126 5.716703 ACCATTTCCAAGGAACCTGAATTAG 59.283 40.000 0.00 0.00 33.41 1.73
4779 5134 1.970640 AGCAACCATTTCCAAGGAACC 59.029 47.619 0.00 0.00 33.41 3.62
4837 5192 2.806244 CAAGGTCAGTGAAAACCCGTAG 59.194 50.000 0.00 0.00 36.11 3.51
4841 5196 1.954382 GTCCAAGGTCAGTGAAAACCC 59.046 52.381 0.00 0.00 36.11 4.11
4908 5263 6.037610 GGAACAGAGATACAATCATGGTCAAC 59.962 42.308 10.47 0.00 36.96 3.18
4970 5325 5.720371 TTAAATAAACCATGCTGTGCACT 57.280 34.783 19.41 0.00 43.04 4.40
5471 5952 5.491078 TGTCTTATATTTTGAGACAGGGGGT 59.509 40.000 1.60 0.00 43.38 4.95
5520 6001 4.737855 TCCAAGTGAATAGGTAGTGCTC 57.262 45.455 0.00 0.00 0.00 4.26
5521 6002 5.700402 ATTCCAAGTGAATAGGTAGTGCT 57.300 39.130 0.00 0.00 41.96 4.40
5522 6003 6.599638 AGAAATTCCAAGTGAATAGGTAGTGC 59.400 38.462 0.00 0.00 42.97 4.40
5523 6004 8.567285 AAGAAATTCCAAGTGAATAGGTAGTG 57.433 34.615 0.00 0.00 42.97 2.74
5722 6323 2.854777 CACAGTAGAGAATACACTGCGC 59.145 50.000 0.00 0.00 42.76 6.09
5723 6324 4.346970 CTCACAGTAGAGAATACACTGCG 58.653 47.826 1.05 0.00 42.76 5.18
5876 6481 0.255890 CCCGGAATCTCAACATGGGT 59.744 55.000 0.73 0.00 0.00 4.51
5924 6529 1.801395 GCAAGCGCATCGTACTCCTTA 60.801 52.381 11.47 0.00 38.36 2.69
6111 6716 6.544928 TCTAGTTTGCCTAGTGAATCATGA 57.455 37.500 0.00 0.00 43.23 3.07
6144 6749 0.576328 CCGCAACAACAACAACATGC 59.424 50.000 0.00 0.00 0.00 4.06
6152 6757 2.932614 CAACCAATTTCCGCAACAACAA 59.067 40.909 0.00 0.00 0.00 2.83
6153 6758 2.544685 CAACCAATTTCCGCAACAACA 58.455 42.857 0.00 0.00 0.00 3.33
6154 6759 1.260297 GCAACCAATTTCCGCAACAAC 59.740 47.619 0.00 0.00 0.00 3.32
6155 6760 1.137872 AGCAACCAATTTCCGCAACAA 59.862 42.857 0.00 0.00 0.00 2.83
6156 6761 0.749649 AGCAACCAATTTCCGCAACA 59.250 45.000 0.00 0.00 0.00 3.33
6157 6762 2.715737 TAGCAACCAATTTCCGCAAC 57.284 45.000 0.00 0.00 0.00 4.17
6183 6788 9.258826 CAAATATTTGTGTTCCAACTTCATCAA 57.741 29.630 18.32 0.00 33.59 2.57
6242 6849 9.474920 CATGTGAAAACCATTTACACTAATTGT 57.525 29.630 0.00 0.00 42.84 2.71
6243 6850 8.434661 GCATGTGAAAACCATTTACACTAATTG 58.565 33.333 0.00 0.00 32.53 2.32
6246 6853 7.043961 TGCATGTGAAAACCATTTACACTAA 57.956 32.000 0.00 0.00 32.53 2.24
6411 7086 1.153309 TCTCCATGGCATGTGAGCG 60.153 57.895 27.34 14.72 34.64 5.03
6568 7243 6.154534 TCAGTTAGCAGCCTAAAGACTTGATA 59.845 38.462 0.00 0.00 35.43 2.15
6572 7247 4.563786 GGTCAGTTAGCAGCCTAAAGACTT 60.564 45.833 12.22 0.00 38.98 3.01
6607 7282 5.084818 TCAAGAAGATAACATCTGCGGAA 57.915 39.130 0.00 0.00 40.08 4.30
6609 7284 7.276658 GGTATATCAAGAAGATAACATCTGCGG 59.723 40.741 0.00 0.00 42.27 5.69
6806 7481 3.059884 GTCTGTGTCGATTGAAGCTTGA 58.940 45.455 2.10 0.00 0.00 3.02
6895 7570 2.370281 ACGCGTGAAGATGAGTTCAT 57.630 45.000 12.93 0.00 38.68 2.57
7036 7713 7.681259 TCCTGAAGATCCATCTAGAAATTGA 57.319 36.000 0.00 0.00 35.76 2.57
7151 7828 6.655078 ATACACCAAATCTGAATAATGCCC 57.345 37.500 0.00 0.00 0.00 5.36
7173 7850 0.039618 CCCCTTGTGCCCTGTACAAT 59.960 55.000 0.00 0.00 37.49 2.71
7270 7948 4.778143 ATCCACGCCGGCTTGTCC 62.778 66.667 28.77 0.00 33.14 4.02
7304 7982 3.360340 GAGTGCCAGTGCCAGTGC 61.360 66.667 0.00 0.00 36.33 4.40
7305 7983 3.046087 CGAGTGCCAGTGCCAGTG 61.046 66.667 0.00 0.00 36.33 3.66
7306 7984 3.550431 ACGAGTGCCAGTGCCAGT 61.550 61.111 0.00 0.00 36.33 4.00
7307 7985 2.994387 TTCACGAGTGCCAGTGCCAG 62.994 60.000 0.00 0.00 38.19 4.85
7308 7986 3.100503 TTCACGAGTGCCAGTGCCA 62.101 57.895 0.00 0.00 38.19 4.92
7322 8000 3.628646 ATCAGCCCGCCCTGTTCAC 62.629 63.158 1.31 0.00 34.47 3.18
7380 8059 1.357690 CCGCGCAATCCGTCTACTA 59.642 57.895 8.75 0.00 39.71 1.82
7381 8060 2.104331 CCGCGCAATCCGTCTACT 59.896 61.111 8.75 0.00 39.71 2.57
7382 8061 3.627218 GCCGCGCAATCCGTCTAC 61.627 66.667 8.75 0.00 39.71 2.59
7478 8157 3.154710 CCAAGTATGCATGCCATGAGAT 58.845 45.455 16.68 2.96 35.34 2.75
7508 8189 0.178944 ATATGGGATGGGTCCGTCGA 60.179 55.000 0.00 0.00 46.09 4.20
7520 8201 1.476110 GCACCCGCTAACAATATGGGA 60.476 52.381 1.98 0.00 42.77 4.37
7550 8231 5.648092 CGTGGGAGGAACATATCTTCTTTTT 59.352 40.000 0.00 0.00 34.67 1.94
7660 8349 6.014242 AGTTCTGTCAGTTGATGAATAGGTCA 60.014 38.462 0.00 0.00 40.43 4.02
7674 8363 4.406003 ACTGTCCTAACAAGTTCTGTCAGT 59.594 41.667 0.00 7.92 37.23 3.41
7676 8365 5.361571 TGTACTGTCCTAACAAGTTCTGTCA 59.638 40.000 0.00 0.00 37.23 3.58
7678 8367 5.864418 TGTACTGTCCTAACAAGTTCTGT 57.136 39.130 0.00 0.00 41.27 3.41
7681 8370 7.279313 TGTTCTTTGTACTGTCCTAACAAGTTC 59.721 37.037 0.00 0.00 34.80 3.01
7689 8398 4.897076 TCTGGTGTTCTTTGTACTGTCCTA 59.103 41.667 0.00 0.00 0.00 2.94
7725 8434 7.174107 ACAATAAAGTTTGCATGGCTTCTAT 57.826 32.000 0.00 0.00 0.00 1.98
7726 8435 6.588719 ACAATAAAGTTTGCATGGCTTCTA 57.411 33.333 0.00 0.00 0.00 2.10
7731 8440 6.089417 GTCTACAACAATAAAGTTTGCATGGC 59.911 38.462 0.00 0.00 0.00 4.40
7760 8469 5.235616 TCGGCCTTAGCATAATAACTTTTCG 59.764 40.000 0.00 0.00 42.56 3.46
7772 8481 2.092968 TGATCTTGTTCGGCCTTAGCAT 60.093 45.455 0.00 0.00 42.56 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.