Multiple sequence alignment - TraesCS2A01G309100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G309100 chr2A 100.000 5874 0 0 1 5874 532090718 532084845 0.000000e+00 10848.0
1 TraesCS2A01G309100 chr2B 87.078 2012 121 66 16 1948 465830592 465828641 0.000000e+00 2146.0
2 TraesCS2A01G309100 chr2B 95.665 1338 37 9 3510 4845 465827043 465825725 0.000000e+00 2130.0
3 TraesCS2A01G309100 chr2B 91.938 1352 51 20 2187 3501 465828443 465827113 0.000000e+00 1840.0
4 TraesCS2A01G309100 chr2B 86.902 397 30 9 4984 5373 465823398 465823017 5.440000e-115 425.0
5 TraesCS2A01G309100 chr2B 94.667 75 4 0 4878 4952 465823473 465823399 3.720000e-22 117.0
6 TraesCS2A01G309100 chr2B 100.000 32 0 0 1 32 465830631 465830600 6.360000e-05 60.2
7 TraesCS2A01G309100 chr2D 96.242 1304 36 6 3548 4849 394120325 394119033 0.000000e+00 2124.0
8 TraesCS2A01G309100 chr2D 91.467 1043 52 25 509 1538 394123342 394122324 0.000000e+00 1399.0
9 TraesCS2A01G309100 chr2D 89.859 710 37 9 2743 3435 394121094 394120403 0.000000e+00 880.0
10 TraesCS2A01G309100 chr2D 93.346 541 14 11 2108 2638 394121776 394121248 0.000000e+00 780.0
11 TraesCS2A01G309100 chr2D 92.475 505 13 10 1 483 394123841 394123340 0.000000e+00 699.0
12 TraesCS2A01G309100 chr2D 87.037 378 14 17 1583 1956 394122244 394121898 1.530000e-105 394.0
13 TraesCS2A01G309100 chr2D 90.032 311 14 4 4878 5188 394118770 394118477 2.570000e-103 387.0
14 TraesCS2A01G309100 chr2D 93.548 155 9 1 5175 5328 394097241 394097087 4.580000e-56 230.0
15 TraesCS2A01G309100 chr2D 92.806 139 7 3 5739 5874 616216741 616216879 1.290000e-46 198.0
16 TraesCS2A01G309100 chr2D 86.275 51 7 0 4479 4529 420309865 420309815 8.220000e-04 56.5
17 TraesCS2A01G309100 chr4D 80.350 743 129 12 3827 4559 63044361 63043626 1.110000e-151 547.0
18 TraesCS2A01G309100 chr4D 90.749 227 21 0 1305 1531 63047294 63047068 2.660000e-78 303.0
19 TraesCS2A01G309100 chr4B 79.946 743 132 12 3827 4559 93409084 93408349 1.120000e-146 531.0
20 TraesCS2A01G309100 chr4B 90.308 227 22 0 1305 1531 93412245 93412019 1.240000e-76 298.0
21 TraesCS2A01G309100 chr4A 80.420 715 123 13 3828 4532 533261409 533262116 4.030000e-146 529.0
22 TraesCS2A01G309100 chr4A 91.189 227 20 0 1305 1531 533258397 533258623 5.720000e-80 309.0
23 TraesCS2A01G309100 chr4A 94.737 38 0 2 1456 1492 709275503 709275467 2.290000e-04 58.4
24 TraesCS2A01G309100 chr4A 94.737 38 0 2 1456 1492 709421835 709421799 2.290000e-04 58.4
25 TraesCS2A01G309100 chrUn 85.139 323 41 5 4239 4559 478813213 478812896 2.040000e-84 324.0
26 TraesCS2A01G309100 chrUn 94.737 38 0 2 1456 1492 346600436 346600472 2.290000e-04 58.4
27 TraesCS2A01G309100 chr6B 93.651 126 7 1 5746 5870 155555891 155555766 2.790000e-43 187.0
28 TraesCS2A01G309100 chr6B 92.857 126 8 1 5746 5870 155556514 155556389 1.300000e-41 182.0
29 TraesCS2A01G309100 chr7D 93.617 94 5 1 5782 5874 5995651 5995558 7.940000e-29 139.0
30 TraesCS2A01G309100 chr7D 94.595 37 2 0 1456 1492 25291563 25291527 2.290000e-04 58.4
31 TraesCS2A01G309100 chr7A 86.792 53 6 1 2066 2118 217545833 217545782 2.290000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G309100 chr2A 532084845 532090718 5873 True 10848.000000 10848 100.000000 1 5874 1 chr2A.!!$R1 5873
1 TraesCS2A01G309100 chr2B 465823017 465830631 7614 True 1119.700000 2146 92.708333 1 5373 6 chr2B.!!$R1 5372
2 TraesCS2A01G309100 chr2D 394118477 394123841 5364 True 951.857143 2124 91.494000 1 5188 7 chr2D.!!$R3 5187
3 TraesCS2A01G309100 chr4D 63043626 63047294 3668 True 425.000000 547 85.549500 1305 4559 2 chr4D.!!$R1 3254
4 TraesCS2A01G309100 chr4B 93408349 93412245 3896 True 414.500000 531 85.127000 1305 4559 2 chr4B.!!$R1 3254
5 TraesCS2A01G309100 chr4A 533258397 533262116 3719 False 419.000000 529 85.804500 1305 4532 2 chr4A.!!$F1 3227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 490 0.110192 GCTGTGGTTTTAGCTGTCGC 60.110 55.000 0.00 0.0 36.99 5.19 F
1210 1297 0.035630 AGGTACGTCGTGCTCCTACT 60.036 55.000 13.25 0.0 0.00 2.57 F
1553 1648 0.176680 CTCCTGCTTCACTACCGCAT 59.823 55.000 0.00 0.0 32.62 4.73 F
2088 2477 0.109342 CCCGGCCTCTGCATTAGAAT 59.891 55.000 0.00 0.0 40.13 2.40 F
3931 5902 1.011242 CGTGTTCAACACCGTGCTG 60.011 57.895 15.20 0.0 45.93 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1406 0.103026 TGATCTCGAACGCCTGGATG 59.897 55.0 0.00 0.00 0.00 3.51 R
2069 2458 0.109342 ATTCTAATGCAGAGGCCGGG 59.891 55.0 2.18 0.00 40.13 5.73 R
3526 5147 0.111089 CAGTTCGCAGCAACTTCGTC 60.111 55.0 7.31 0.00 34.17 4.20 R
4078 6049 0.250234 TGAGCCTCTTCATGAACGGG 59.750 55.0 16.75 15.57 0.00 5.28 R
5149 9530 0.037447 AGGCTGAAGAAGAGGCCAAC 59.963 55.0 5.01 0.00 46.23 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 113 7.458409 CCATCTATATTGTGGCTTGCTAATT 57.542 36.000 0.00 0.00 0.00 1.40
89 114 8.565896 CCATCTATATTGTGGCTTGCTAATTA 57.434 34.615 0.00 0.00 0.00 1.40
90 115 8.454106 CCATCTATATTGTGGCTTGCTAATTAC 58.546 37.037 0.00 0.00 0.00 1.89
419 464 3.142174 GGCCATCAAGTAGTTATCCTGC 58.858 50.000 0.00 0.00 0.00 4.85
445 490 0.110192 GCTGTGGTTTTAGCTGTCGC 60.110 55.000 0.00 0.00 36.99 5.19
464 510 2.548875 GCACAAGCTCCTCACTGATAG 58.451 52.381 0.00 0.00 37.91 2.08
468 514 2.762887 CAAGCTCCTCACTGATAGGTCA 59.237 50.000 0.00 0.00 35.48 4.02
573 627 2.034053 CCTCTATCTGAACGTCTCTGCC 59.966 54.545 0.00 0.00 0.00 4.85
585 639 0.820226 TCTCTGCCTCAGTCAATCCG 59.180 55.000 0.00 0.00 32.61 4.18
605 659 5.168569 TCCGCAACACAAAAACAACAATAA 58.831 33.333 0.00 0.00 0.00 1.40
672 726 2.872245 CAGAACAAGGAACACACATCGT 59.128 45.455 0.00 0.00 0.00 3.73
690 744 1.024579 GTACATGGACCTGCCCAACG 61.025 60.000 0.00 0.00 40.04 4.10
694 748 0.916086 ATGGACCTGCCCAACGATTA 59.084 50.000 0.00 0.00 40.04 1.75
778 832 2.752358 CCTCCCAACTCAGCAGCA 59.248 61.111 0.00 0.00 0.00 4.41
779 833 1.376942 CCTCCCAACTCAGCAGCAG 60.377 63.158 0.00 0.00 0.00 4.24
780 834 2.033141 TCCCAACTCAGCAGCAGC 59.967 61.111 0.00 0.00 42.56 5.25
891 952 0.393132 GGGAAGGCCACTAGCTCAAC 60.393 60.000 5.01 0.00 43.05 3.18
910 971 3.996614 CCCCTTTCGGCATTCGTT 58.003 55.556 0.00 0.00 40.32 3.85
911 972 1.506262 CCCCTTTCGGCATTCGTTG 59.494 57.895 0.00 0.00 40.32 4.10
912 973 0.958382 CCCCTTTCGGCATTCGTTGA 60.958 55.000 0.00 0.00 40.32 3.18
914 975 1.472480 CCCTTTCGGCATTCGTTGATT 59.528 47.619 0.00 0.00 40.32 2.57
943 1004 2.542597 GCAAGAGAGAGCAGAGTCATG 58.457 52.381 0.00 0.00 0.00 3.07
1032 1093 1.376166 CAGCAGCAGAGCAGAGCTT 60.376 57.895 0.00 0.00 39.88 3.74
1035 1096 2.125592 AGCAGAGCAGAGCTTCGC 60.126 61.111 0.21 0.21 39.88 4.70
1046 1107 1.202510 AGAGCTTCGCCATTCAGCTAG 60.203 52.381 0.00 0.00 44.12 3.42
1048 1109 1.202510 AGCTTCGCCATTCAGCTAGAG 60.203 52.381 0.00 0.00 42.25 2.43
1050 1111 2.200067 CTTCGCCATTCAGCTAGAGTG 58.800 52.381 0.00 0.00 34.03 3.51
1054 1115 1.661341 CCATTCAGCTAGAGTGGTGC 58.339 55.000 15.12 0.00 46.15 5.01
1056 1117 2.432146 CCATTCAGCTAGAGTGGTGCTA 59.568 50.000 15.12 0.00 46.15 3.49
1057 1118 3.452474 CATTCAGCTAGAGTGGTGCTAC 58.548 50.000 0.00 0.00 35.05 3.58
1202 1289 1.061711 CTTCGTCCTAGGTACGTCGTG 59.938 57.143 23.88 13.71 41.08 4.35
1210 1297 0.035630 AGGTACGTCGTGCTCCTACT 60.036 55.000 13.25 0.00 0.00 2.57
1211 1298 0.807496 GGTACGTCGTGCTCCTACTT 59.193 55.000 13.25 0.00 0.00 2.24
1212 1299 2.009774 GGTACGTCGTGCTCCTACTTA 58.990 52.381 13.25 0.00 0.00 2.24
1224 1311 6.199154 CGTGCTCCTACTTATACATCAAGTTG 59.801 42.308 0.00 0.00 37.42 3.16
1226 1313 5.467063 GCTCCTACTTATACATCAAGTTGGC 59.533 44.000 2.34 0.00 43.96 4.52
1524 1619 1.428219 CTTCGGCTTCGTCGAGCTA 59.572 57.895 13.74 3.66 41.72 3.32
1538 1633 3.042871 CGAGCTATCGGTACTACTCCT 57.957 52.381 0.00 0.00 45.39 3.69
1539 1634 2.737783 CGAGCTATCGGTACTACTCCTG 59.262 54.545 0.00 0.00 45.39 3.86
1545 1640 2.089980 TCGGTACTACTCCTGCTTCAC 58.910 52.381 0.00 0.00 0.00 3.18
1550 1645 2.093106 ACTACTCCTGCTTCACTACCG 58.907 52.381 0.00 0.00 0.00 4.02
1552 1647 1.185618 ACTCCTGCTTCACTACCGCA 61.186 55.000 0.00 0.00 0.00 5.69
1553 1648 0.176680 CTCCTGCTTCACTACCGCAT 59.823 55.000 0.00 0.00 32.62 4.73
1555 1650 2.036475 CTCCTGCTTCACTACCGCATAT 59.964 50.000 0.00 0.00 32.62 1.78
1556 1651 2.138320 CCTGCTTCACTACCGCATATG 58.862 52.381 0.00 0.00 32.62 1.78
1581 1676 7.121907 TGCGTAATCTCTCTATCAATCTATGCT 59.878 37.037 0.00 0.00 0.00 3.79
1610 1930 3.737172 GGCCTGCGCGTGTTTCAT 61.737 61.111 8.43 0.00 35.02 2.57
1613 1933 1.573932 CCTGCGCGTGTTTCATTCA 59.426 52.632 8.43 0.00 0.00 2.57
1615 1935 1.321016 CTGCGCGTGTTTCATTCAAG 58.679 50.000 8.43 0.00 0.00 3.02
1653 1973 1.276421 AGGAAGATGGAACGTGTGAGG 59.724 52.381 0.00 0.00 0.00 3.86
1668 1988 2.167487 TGTGAGGGTGTTTTTCCTTTGC 59.833 45.455 0.00 0.00 32.74 3.68
1797 2119 1.576451 ATTCAACGCACGCAGCATGA 61.576 50.000 0.00 2.22 46.13 3.07
1806 2129 1.660607 CACGCAGCATGACTCGTAATT 59.339 47.619 0.00 0.00 39.69 1.40
1811 2134 3.738282 GCAGCATGACTCGTAATTAGGAG 59.262 47.826 26.13 26.13 39.69 3.69
1832 2162 7.258441 AGGAGTAGTTTTTGTTTTCTGAAAGC 58.742 34.615 9.68 9.68 0.00 3.51
1840 2170 3.694734 TGTTTTCTGAAAGCAAAGCGAG 58.305 40.909 15.85 0.00 27.45 5.03
1843 2173 4.468095 TTTCTGAAAGCAAAGCGAGTAC 57.532 40.909 0.00 0.00 0.00 2.73
1849 2179 4.210537 TGAAAGCAAAGCGAGTACAACTAC 59.789 41.667 0.00 0.00 0.00 2.73
1850 2180 3.380479 AGCAAAGCGAGTACAACTACA 57.620 42.857 0.00 0.00 0.00 2.74
1851 2181 3.057734 AGCAAAGCGAGTACAACTACAC 58.942 45.455 0.00 0.00 0.00 2.90
1852 2182 2.798283 GCAAAGCGAGTACAACTACACA 59.202 45.455 0.00 0.00 0.00 3.72
1862 2192 0.581529 CAACTACACACACACGCCAG 59.418 55.000 0.00 0.00 0.00 4.85
1887 2217 5.765182 TGGGAATTTGTTTGTTGTTGTTGTT 59.235 32.000 0.00 0.00 0.00 2.83
1914 2244 2.382882 TGCCTGAAAACAACATGTCCA 58.617 42.857 0.00 0.00 0.00 4.02
1917 2247 3.555547 GCCTGAAAACAACATGTCCAAAC 59.444 43.478 0.00 0.00 0.00 2.93
1949 2288 6.090493 GTGCTAGTGTTACTTGCCTACTTTAC 59.910 42.308 11.66 0.28 44.40 2.01
1953 2292 5.995897 AGTGTTACTTGCCTACTTTACTTGG 59.004 40.000 0.00 0.00 0.00 3.61
1960 2299 3.263261 GCCTACTTTACTTGGCACTCTC 58.737 50.000 0.00 0.00 44.34 3.20
1963 2302 3.838244 ACTTTACTTGGCACTCTCACA 57.162 42.857 0.00 0.00 0.00 3.58
1968 2307 1.271597 ACTTGGCACTCTCACAATCCC 60.272 52.381 0.00 0.00 0.00 3.85
1971 2310 0.326264 GGCACTCTCACAATCCCAGT 59.674 55.000 0.00 0.00 0.00 4.00
1974 2313 2.355513 GCACTCTCACAATCCCAGTCAT 60.356 50.000 0.00 0.00 0.00 3.06
1977 2316 4.763793 CACTCTCACAATCCCAGTCATTTT 59.236 41.667 0.00 0.00 0.00 1.82
2072 2461 4.594123 TTTTTAAAGAAGGAAAGCCCCG 57.406 40.909 0.00 0.00 34.66 5.73
2073 2462 2.209690 TTAAAGAAGGAAAGCCCCGG 57.790 50.000 0.00 0.00 34.66 5.73
2074 2463 0.323087 TAAAGAAGGAAAGCCCCGGC 60.323 55.000 0.00 0.00 42.33 6.13
2075 2464 3.585525 AAGAAGGAAAGCCCCGGCC 62.586 63.158 1.02 0.00 43.17 6.13
2076 2465 4.048470 GAAGGAAAGCCCCGGCCT 62.048 66.667 0.00 0.00 43.17 5.19
2077 2466 3.997400 GAAGGAAAGCCCCGGCCTC 62.997 68.421 0.00 0.00 43.17 4.70
2079 2468 4.803908 GGAAAGCCCCGGCCTCTG 62.804 72.222 0.00 0.00 43.17 3.35
2084 2473 4.189580 GCCCCGGCCTCTGCATTA 62.190 66.667 0.00 0.00 40.13 1.90
2085 2474 2.111878 CCCCGGCCTCTGCATTAG 59.888 66.667 0.00 0.00 40.13 1.73
2086 2475 2.443394 CCCCGGCCTCTGCATTAGA 61.443 63.158 0.00 0.00 40.13 2.10
2087 2476 1.526887 CCCGGCCTCTGCATTAGAA 59.473 57.895 0.00 0.00 40.13 2.10
2088 2477 0.109342 CCCGGCCTCTGCATTAGAAT 59.891 55.000 0.00 0.00 40.13 2.40
2089 2478 1.233019 CCGGCCTCTGCATTAGAATG 58.767 55.000 0.00 0.00 40.13 2.67
2090 2479 1.202687 CCGGCCTCTGCATTAGAATGA 60.203 52.381 0.00 0.00 38.70 2.57
2091 2480 2.551721 CCGGCCTCTGCATTAGAATGAT 60.552 50.000 0.00 0.00 38.70 2.45
2092 2481 2.483106 CGGCCTCTGCATTAGAATGATG 59.517 50.000 0.00 0.00 38.70 3.07
2093 2482 3.484407 GGCCTCTGCATTAGAATGATGT 58.516 45.455 6.43 0.00 38.70 3.06
2094 2483 4.645535 GGCCTCTGCATTAGAATGATGTA 58.354 43.478 6.43 0.00 38.70 2.29
2095 2484 5.251764 GGCCTCTGCATTAGAATGATGTAT 58.748 41.667 6.43 0.00 38.70 2.29
2096 2485 5.123502 GGCCTCTGCATTAGAATGATGTATG 59.876 44.000 6.43 0.00 38.70 2.39
2097 2486 5.123502 GCCTCTGCATTAGAATGATGTATGG 59.876 44.000 6.43 1.95 38.70 2.74
2098 2487 6.470278 CCTCTGCATTAGAATGATGTATGGA 58.530 40.000 6.43 0.00 38.70 3.41
2099 2488 6.594547 CCTCTGCATTAGAATGATGTATGGAG 59.405 42.308 6.43 0.00 38.70 3.86
2100 2489 5.936372 TCTGCATTAGAATGATGTATGGAGC 59.064 40.000 6.43 0.00 38.70 4.70
2101 2490 5.005740 TGCATTAGAATGATGTATGGAGCC 58.994 41.667 6.43 0.00 38.70 4.70
2102 2491 5.005740 GCATTAGAATGATGTATGGAGCCA 58.994 41.667 6.43 0.00 38.70 4.75
2103 2492 5.651139 GCATTAGAATGATGTATGGAGCCAT 59.349 40.000 7.25 7.25 38.70 4.40
2106 2495 8.582437 CATTAGAATGATGTATGGAGCCATTTT 58.418 33.333 7.41 0.00 38.70 1.82
2159 2548 9.810231 GTACTGTTTTGCAATGGATTTTTATTG 57.190 29.630 0.00 0.00 37.35 1.90
2164 2553 8.450180 GTTTTGCAATGGATTTTTATTGGTAGG 58.550 33.333 0.00 0.00 35.40 3.18
2165 2554 6.865834 TGCAATGGATTTTTATTGGTAGGT 57.134 33.333 0.00 0.00 35.40 3.08
2166 2555 6.638610 TGCAATGGATTTTTATTGGTAGGTG 58.361 36.000 0.00 0.00 35.40 4.00
2167 2556 6.212388 TGCAATGGATTTTTATTGGTAGGTGT 59.788 34.615 0.00 0.00 35.40 4.16
2171 2560 9.719355 AATGGATTTTTATTGGTAGGTGTTTTC 57.281 29.630 0.00 0.00 0.00 2.29
2172 2561 8.485578 TGGATTTTTATTGGTAGGTGTTTTCT 57.514 30.769 0.00 0.00 0.00 2.52
2173 2562 8.929487 TGGATTTTTATTGGTAGGTGTTTTCTT 58.071 29.630 0.00 0.00 0.00 2.52
2174 2563 9.772973 GGATTTTTATTGGTAGGTGTTTTCTTT 57.227 29.630 0.00 0.00 0.00 2.52
2179 2568 9.974980 TTTATTGGTAGGTGTTTTCTTTTCATC 57.025 29.630 0.00 0.00 0.00 2.92
2699 3204 7.747888 TGATTGTAAAGACGGACATGTTAATG 58.252 34.615 0.00 0.00 39.89 1.90
2702 3207 5.640357 TGTAAAGACGGACATGTTAATGGTC 59.360 40.000 0.00 3.88 38.19 4.02
2734 3246 3.375782 AAAAATCAACTGGCTGAGTGC 57.624 42.857 0.00 0.00 41.94 4.40
2758 3270 1.112459 GTTCTGACAAACTTTGCGCG 58.888 50.000 0.00 0.00 0.00 6.86
2878 3434 5.124457 TCAGAAATTTCCAAGATACTGCAGC 59.876 40.000 15.27 0.00 0.00 5.25
2903 3459 2.224257 TGCAAGAATTTTGGCCAAGACC 60.224 45.455 19.48 9.98 0.00 3.85
2931 3487 9.726652 ATGATCTGATCACATTACTATATCCCT 57.273 33.333 21.71 0.00 43.01 4.20
2934 3490 6.897966 TCTGATCACATTACTATATCCCTCCC 59.102 42.308 0.00 0.00 0.00 4.30
3098 4039 7.654568 AGGTACAAGTAGTTTACATTTTTGCC 58.345 34.615 0.00 0.00 0.00 4.52
3130 4078 5.414454 CAGATCTAGTCAGATACACCTAGCC 59.586 48.000 0.00 0.00 41.78 3.93
3148 4096 1.674221 GCCAGAAACGATGTGCTCTCT 60.674 52.381 0.00 0.00 0.00 3.10
3149 4097 1.998315 CCAGAAACGATGTGCTCTCTG 59.002 52.381 0.00 0.00 0.00 3.35
3150 4098 1.392853 CAGAAACGATGTGCTCTCTGC 59.607 52.381 0.00 0.00 43.25 4.26
3168 4116 1.750206 TGCAATGCAAGTTGTGTCTGT 59.250 42.857 5.01 0.00 34.76 3.41
3191 4139 4.097286 TGGTGCAGTTCTTAAAGGTTTGTC 59.903 41.667 0.00 0.00 0.00 3.18
3242 4193 2.193536 GCAGCGGTTTTGGTCCTGT 61.194 57.895 0.00 0.00 0.00 4.00
3335 4296 2.350804 CAGCATTGGTTCGAGATGACAG 59.649 50.000 4.88 0.00 0.00 3.51
3396 4357 6.184706 GTGCTTTATGCTGTTTTTGTCAAAC 58.815 36.000 0.00 0.00 43.37 2.93
3405 4366 5.004061 GCTGTTTTTGTCAAACGAGGTTAAC 59.996 40.000 0.00 0.00 33.05 2.01
3437 4398 6.533730 TGACACAGAAATGTAGAATTGGACT 58.466 36.000 0.00 0.00 31.24 3.85
3440 4401 8.237811 ACACAGAAATGTAGAATTGGACTTTT 57.762 30.769 0.00 0.00 0.00 2.27
3441 4402 8.695456 ACACAGAAATGTAGAATTGGACTTTTT 58.305 29.630 0.00 0.00 0.00 1.94
3493 4463 7.868922 TGGCAATATCATTTACATCAGATTTGC 59.131 33.333 0.00 0.00 35.82 3.68
3494 4464 7.868922 GGCAATATCATTTACATCAGATTTGCA 59.131 33.333 10.00 0.00 36.88 4.08
3495 4465 9.251792 GCAATATCATTTACATCAGATTTGCAA 57.748 29.630 0.00 0.00 36.15 4.08
3499 4469 8.697846 ATCATTTACATCAGATTTGCAACTTG 57.302 30.769 0.00 0.00 0.00 3.16
3500 4470 6.587226 TCATTTACATCAGATTTGCAACTTGC 59.413 34.615 6.82 6.82 45.29 4.01
3502 4472 3.909430 ACATCAGATTTGCAACTTGCTG 58.091 40.909 14.78 4.70 45.31 4.41
3504 4474 4.202182 ACATCAGATTTGCAACTTGCTGTT 60.202 37.500 14.78 0.00 45.31 3.16
3506 4476 4.757594 TCAGATTTGCAACTTGCTGTTTT 58.242 34.783 14.78 0.00 45.31 2.43
3507 4477 4.805192 TCAGATTTGCAACTTGCTGTTTTC 59.195 37.500 14.78 5.31 45.31 2.29
3931 5902 1.011242 CGTGTTCAACACCGTGCTG 60.011 57.895 15.20 0.00 45.93 4.41
4081 6052 3.213402 GAGCTCCTCCTCGTCCCG 61.213 72.222 0.87 0.00 0.00 5.14
4091 6062 0.530744 CCTCGTCCCGTTCATGAAGA 59.469 55.000 8.80 0.00 0.00 2.87
4099 6070 1.363744 CGTTCATGAAGAGGCTCACC 58.636 55.000 18.26 8.22 0.00 4.02
4635 6612 1.339438 TGCCAAGGAGATCAGCTGAAC 60.339 52.381 22.50 18.85 0.00 3.18
4641 6618 2.763448 AGGAGATCAGCTGAACACCTAC 59.237 50.000 31.96 21.28 36.48 3.18
4642 6619 2.763448 GGAGATCAGCTGAACACCTACT 59.237 50.000 26.18 14.75 0.00 2.57
4643 6620 3.954904 GGAGATCAGCTGAACACCTACTA 59.045 47.826 26.18 0.34 0.00 1.82
4704 6681 7.806690 TGTAGAAATGCATGAAAAGTAGTGAC 58.193 34.615 0.00 0.00 0.00 3.67
4871 9049 2.611292 AGCGAATGAAGCAACAGATAGC 59.389 45.455 0.00 0.00 37.01 2.97
4873 9051 3.545624 GCGAATGAAGCAACAGATAGCAG 60.546 47.826 0.00 0.00 34.19 4.24
4874 9052 3.867493 CGAATGAAGCAACAGATAGCAGA 59.133 43.478 0.00 0.00 0.00 4.26
4875 9053 4.260132 CGAATGAAGCAACAGATAGCAGAC 60.260 45.833 0.00 0.00 0.00 3.51
4889 9270 1.694150 AGCAGACTAGCACAAACCTCA 59.306 47.619 0.00 0.00 36.85 3.86
4964 9345 6.955364 AGATGTACATATCATAGCCAAGCAT 58.045 36.000 8.71 0.00 0.00 3.79
4965 9346 8.082672 AGATGTACATATCATAGCCAAGCATA 57.917 34.615 8.71 0.00 0.00 3.14
4966 9347 7.984050 AGATGTACATATCATAGCCAAGCATAC 59.016 37.037 8.71 0.00 0.00 2.39
4967 9348 7.003402 TGTACATATCATAGCCAAGCATACA 57.997 36.000 0.00 0.00 0.00 2.29
4968 9349 7.099120 TGTACATATCATAGCCAAGCATACAG 58.901 38.462 0.00 0.00 0.00 2.74
4969 9350 6.364568 ACATATCATAGCCAAGCATACAGA 57.635 37.500 0.00 0.00 0.00 3.41
4970 9351 6.772605 ACATATCATAGCCAAGCATACAGAA 58.227 36.000 0.00 0.00 0.00 3.02
4977 9358 5.511234 AGCCAAGCATACAGAATTCAATC 57.489 39.130 8.44 0.00 0.00 2.67
5013 9394 5.424121 AAATCTTGTTCAGGTCTTTCACG 57.576 39.130 0.00 0.00 0.00 4.35
5035 9416 6.145858 CACGATGCTCGATAAGTAGTACTACT 59.854 42.308 26.61 26.61 44.46 2.57
5046 9427 6.917217 AAGTAGTACTACTAGCAGTTACGG 57.083 41.667 30.89 0.00 44.96 4.02
5056 9437 1.968493 AGCAGTTACGGAGTTTCCAGA 59.032 47.619 0.00 0.00 37.78 3.86
5061 9442 3.114065 GTTACGGAGTTTCCAGATAGCG 58.886 50.000 0.00 0.00 37.78 4.26
5101 9482 3.560896 ACATGCTGCAAATTTTGTCCAAC 59.439 39.130 6.36 0.00 0.00 3.77
5102 9483 3.257469 TGCTGCAAATTTTGTCCAACA 57.743 38.095 10.65 0.91 0.00 3.33
5103 9484 3.196463 TGCTGCAAATTTTGTCCAACAG 58.804 40.909 10.65 9.41 0.00 3.16
5104 9485 3.197265 GCTGCAAATTTTGTCCAACAGT 58.803 40.909 10.65 0.00 0.00 3.55
5105 9486 3.245990 GCTGCAAATTTTGTCCAACAGTC 59.754 43.478 10.65 3.02 0.00 3.51
5106 9487 3.791245 TGCAAATTTTGTCCAACAGTCC 58.209 40.909 10.65 0.00 0.00 3.85
5107 9488 3.196469 TGCAAATTTTGTCCAACAGTCCA 59.804 39.130 10.65 0.00 0.00 4.02
5108 9489 4.187694 GCAAATTTTGTCCAACAGTCCAA 58.812 39.130 10.65 0.00 0.00 3.53
5134 9515 5.443283 ACACCATCTTACAGAATGATGCAT 58.557 37.500 0.00 0.00 39.69 3.96
5142 9523 2.496070 ACAGAATGATGCATTTGCTGCT 59.504 40.909 15.23 4.19 46.27 4.24
5192 9573 2.121948 TCAGGCTATCCTTCAGTGCAT 58.878 47.619 0.00 0.00 41.93 3.96
5203 9584 4.224594 TCCTTCAGTGCATGAATCTCTTCT 59.775 41.667 0.00 0.00 46.71 2.85
5210 9591 4.034279 GTGCATGAATCTCTTCTCTCAAGC 59.966 45.833 0.00 0.00 34.10 4.01
5212 9593 4.271533 GCATGAATCTCTTCTCTCAAGCTG 59.728 45.833 0.00 0.00 31.58 4.24
5218 9599 4.406456 TCTCTTCTCTCAAGCTGTTCTCT 58.594 43.478 0.00 0.00 0.00 3.10
5248 9629 2.096019 CCTTTCTTTCTGCTCTTCGTGC 60.096 50.000 0.00 0.00 0.00 5.34
5255 9636 3.123620 GCTCTTCGTGCAGCTGGG 61.124 66.667 17.12 0.00 32.48 4.45
5295 9676 6.930667 TGTACTGTTTAACTTTTCCTCCAC 57.069 37.500 0.00 0.00 0.00 4.02
5300 9681 7.981142 ACTGTTTAACTTTTCCTCCACCTATA 58.019 34.615 0.00 0.00 0.00 1.31
5312 9693 4.141688 CCTCCACCTATAAAGACAGGTTCC 60.142 50.000 0.00 0.00 42.68 3.62
5316 9697 5.414765 CCACCTATAAAGACAGGTTCCAAAC 59.585 44.000 0.00 0.00 42.68 2.93
5420 9804 8.873215 AAAGTAAACGTAGGTGATCATAGATG 57.127 34.615 0.00 0.00 0.00 2.90
5421 9805 7.584122 AGTAAACGTAGGTGATCATAGATGT 57.416 36.000 0.00 0.00 0.00 3.06
5422 9806 8.008513 AGTAAACGTAGGTGATCATAGATGTT 57.991 34.615 0.00 2.27 0.00 2.71
5423 9807 8.475639 AGTAAACGTAGGTGATCATAGATGTTT 58.524 33.333 19.39 19.39 0.00 2.83
5424 9808 7.539712 AAACGTAGGTGATCATAGATGTTTG 57.460 36.000 16.78 0.37 0.00 2.93
5425 9809 6.222038 ACGTAGGTGATCATAGATGTTTGT 57.778 37.500 0.00 0.00 0.00 2.83
5426 9810 7.342769 ACGTAGGTGATCATAGATGTTTGTA 57.657 36.000 0.00 0.00 0.00 2.41
5427 9811 7.952671 ACGTAGGTGATCATAGATGTTTGTAT 58.047 34.615 0.00 0.00 0.00 2.29
5428 9812 8.082852 ACGTAGGTGATCATAGATGTTTGTATC 58.917 37.037 0.00 0.00 0.00 2.24
5429 9813 7.542477 CGTAGGTGATCATAGATGTTTGTATCC 59.458 40.741 0.00 0.00 0.00 2.59
5430 9814 7.379059 AGGTGATCATAGATGTTTGTATCCA 57.621 36.000 0.00 0.00 0.00 3.41
5431 9815 7.805163 AGGTGATCATAGATGTTTGTATCCAA 58.195 34.615 0.00 0.00 0.00 3.53
5432 9816 8.443176 AGGTGATCATAGATGTTTGTATCCAAT 58.557 33.333 0.00 0.00 0.00 3.16
5433 9817 9.725019 GGTGATCATAGATGTTTGTATCCAATA 57.275 33.333 0.00 0.00 0.00 1.90
5438 9822 9.546428 TCATAGATGTTTGTATCCAATACTGTG 57.454 33.333 0.00 0.00 36.70 3.66
5439 9823 9.546428 CATAGATGTTTGTATCCAATACTGTGA 57.454 33.333 0.00 0.00 36.70 3.58
5440 9824 7.849804 AGATGTTTGTATCCAATACTGTGAC 57.150 36.000 0.00 0.00 36.70 3.67
5441 9825 7.394016 AGATGTTTGTATCCAATACTGTGACA 58.606 34.615 0.00 0.00 36.70 3.58
5442 9826 8.049117 AGATGTTTGTATCCAATACTGTGACAT 58.951 33.333 0.00 0.00 36.70 3.06
5443 9827 9.325198 GATGTTTGTATCCAATACTGTGACATA 57.675 33.333 0.00 0.00 36.70 2.29
5444 9828 8.487313 TGTTTGTATCCAATACTGTGACATAC 57.513 34.615 0.00 0.00 36.70 2.39
5445 9829 8.318412 TGTTTGTATCCAATACTGTGACATACT 58.682 33.333 0.00 0.00 36.70 2.12
5446 9830 9.811995 GTTTGTATCCAATACTGTGACATACTA 57.188 33.333 0.00 0.00 36.70 1.82
5452 9836 9.712305 ATCCAATACTGTGACATACTATTAAGC 57.288 33.333 0.00 0.00 0.00 3.09
5453 9837 8.924303 TCCAATACTGTGACATACTATTAAGCT 58.076 33.333 0.00 0.00 0.00 3.74
5461 9845 9.244799 TGTGACATACTATTAAGCTACAAATCG 57.755 33.333 0.00 0.00 0.00 3.34
5462 9846 8.700644 GTGACATACTATTAAGCTACAAATCGG 58.299 37.037 0.00 0.00 0.00 4.18
5463 9847 7.384115 TGACATACTATTAAGCTACAAATCGGC 59.616 37.037 0.00 0.00 0.00 5.54
5464 9848 6.649557 ACATACTATTAAGCTACAAATCGGCC 59.350 38.462 0.00 0.00 0.00 6.13
5465 9849 4.056050 ACTATTAAGCTACAAATCGGCCG 58.944 43.478 22.12 22.12 0.00 6.13
5466 9850 1.658994 TTAAGCTACAAATCGGCCGG 58.341 50.000 27.83 11.94 0.00 6.13
5467 9851 0.825410 TAAGCTACAAATCGGCCGGA 59.175 50.000 27.83 12.89 0.00 5.14
5468 9852 0.743345 AAGCTACAAATCGGCCGGAC 60.743 55.000 27.83 0.00 0.00 4.79
5469 9853 1.448893 GCTACAAATCGGCCGGACA 60.449 57.895 27.83 6.34 0.00 4.02
5470 9854 0.814010 GCTACAAATCGGCCGGACAT 60.814 55.000 27.83 8.97 0.00 3.06
5471 9855 0.937304 CTACAAATCGGCCGGACATG 59.063 55.000 27.83 20.64 0.00 3.21
5472 9856 0.250793 TACAAATCGGCCGGACATGT 59.749 50.000 27.83 24.84 33.04 3.21
5473 9857 1.024579 ACAAATCGGCCGGACATGTC 61.025 55.000 27.83 17.91 0.00 3.06
5474 9858 1.024046 CAAATCGGCCGGACATGTCA 61.024 55.000 27.83 2.60 0.00 3.58
5475 9859 0.107214 AAATCGGCCGGACATGTCAT 60.107 50.000 27.83 5.45 0.00 3.06
5476 9860 0.532862 AATCGGCCGGACATGTCATC 60.533 55.000 27.83 14.11 0.00 2.92
5477 9861 1.685355 ATCGGCCGGACATGTCATCA 61.685 55.000 27.83 0.12 0.00 3.07
5478 9862 1.449423 CGGCCGGACATGTCATCAA 60.449 57.895 26.47 0.00 0.00 2.57
5479 9863 0.815213 CGGCCGGACATGTCATCAAT 60.815 55.000 26.47 0.00 0.00 2.57
5480 9864 1.392589 GGCCGGACATGTCATCAATT 58.607 50.000 26.47 0.00 0.00 2.32
5481 9865 2.571212 GGCCGGACATGTCATCAATTA 58.429 47.619 26.47 0.00 0.00 1.40
5482 9866 2.290641 GGCCGGACATGTCATCAATTAC 59.709 50.000 26.47 6.31 0.00 1.89
5483 9867 2.942376 GCCGGACATGTCATCAATTACA 59.058 45.455 26.47 0.00 0.00 2.41
5484 9868 3.565482 GCCGGACATGTCATCAATTACAT 59.435 43.478 26.47 0.00 36.78 2.29
5485 9869 4.319766 GCCGGACATGTCATCAATTACATC 60.320 45.833 26.47 4.40 34.12 3.06
5486 9870 4.815846 CCGGACATGTCATCAATTACATCA 59.184 41.667 26.47 0.00 34.12 3.07
5487 9871 5.049886 CCGGACATGTCATCAATTACATCAG 60.050 44.000 26.47 0.00 34.12 2.90
5488 9872 5.754890 CGGACATGTCATCAATTACATCAGA 59.245 40.000 26.47 0.00 34.12 3.27
5489 9873 6.258507 CGGACATGTCATCAATTACATCAGAA 59.741 38.462 26.47 0.00 34.12 3.02
5490 9874 7.201635 CGGACATGTCATCAATTACATCAGAAA 60.202 37.037 26.47 0.00 34.12 2.52
5491 9875 8.461222 GGACATGTCATCAATTACATCAGAAAA 58.539 33.333 26.47 0.00 34.12 2.29
5492 9876 9.282247 GACATGTCATCAATTACATCAGAAAAC 57.718 33.333 21.07 0.00 34.12 2.43
5493 9877 8.795513 ACATGTCATCAATTACATCAGAAAACA 58.204 29.630 0.00 0.00 34.12 2.83
5494 9878 9.285770 CATGTCATCAATTACATCAGAAAACAG 57.714 33.333 0.00 0.00 34.12 3.16
5495 9879 8.394971 TGTCATCAATTACATCAGAAAACAGT 57.605 30.769 0.00 0.00 0.00 3.55
5496 9880 8.291740 TGTCATCAATTACATCAGAAAACAGTG 58.708 33.333 0.00 0.00 0.00 3.66
5497 9881 8.506437 GTCATCAATTACATCAGAAAACAGTGA 58.494 33.333 0.00 0.00 0.00 3.41
5498 9882 8.724229 TCATCAATTACATCAGAAAACAGTGAG 58.276 33.333 0.00 0.00 0.00 3.51
5499 9883 8.724229 CATCAATTACATCAGAAAACAGTGAGA 58.276 33.333 0.00 0.00 0.00 3.27
5500 9884 8.315391 TCAATTACATCAGAAAACAGTGAGAG 57.685 34.615 0.00 0.00 0.00 3.20
5501 9885 7.933577 TCAATTACATCAGAAAACAGTGAGAGT 59.066 33.333 0.00 0.00 0.00 3.24
5502 9886 7.897575 ATTACATCAGAAAACAGTGAGAGTC 57.102 36.000 0.00 0.00 0.00 3.36
5503 9887 4.636249 ACATCAGAAAACAGTGAGAGTCC 58.364 43.478 0.00 0.00 0.00 3.85
5504 9888 4.101585 ACATCAGAAAACAGTGAGAGTCCA 59.898 41.667 0.00 0.00 0.00 4.02
5505 9889 4.753516 TCAGAAAACAGTGAGAGTCCAA 57.246 40.909 0.00 0.00 0.00 3.53
5506 9890 5.296151 TCAGAAAACAGTGAGAGTCCAAT 57.704 39.130 0.00 0.00 0.00 3.16
5507 9891 5.684704 TCAGAAAACAGTGAGAGTCCAATT 58.315 37.500 0.00 0.00 0.00 2.32
5508 9892 5.528690 TCAGAAAACAGTGAGAGTCCAATTG 59.471 40.000 0.00 0.00 0.00 2.32
5509 9893 4.823989 AGAAAACAGTGAGAGTCCAATTGG 59.176 41.667 19.08 19.08 0.00 3.16
5510 9894 3.864789 AACAGTGAGAGTCCAATTGGT 57.135 42.857 23.76 5.78 36.34 3.67
5511 9895 3.409026 ACAGTGAGAGTCCAATTGGTC 57.591 47.619 23.76 18.40 36.34 4.02
5512 9896 2.975489 ACAGTGAGAGTCCAATTGGTCT 59.025 45.455 22.10 22.10 36.30 3.85
5513 9897 3.392616 ACAGTGAGAGTCCAATTGGTCTT 59.607 43.478 22.66 13.73 33.78 3.01
5514 9898 4.141390 ACAGTGAGAGTCCAATTGGTCTTT 60.141 41.667 22.66 18.07 33.78 2.52
5515 9899 4.823989 CAGTGAGAGTCCAATTGGTCTTTT 59.176 41.667 22.66 15.13 33.78 2.27
5516 9900 5.049129 CAGTGAGAGTCCAATTGGTCTTTTC 60.049 44.000 22.66 21.23 33.78 2.29
5517 9901 5.066593 GTGAGAGTCCAATTGGTCTTTTCT 58.933 41.667 22.66 16.14 33.78 2.52
5518 9902 5.532779 GTGAGAGTCCAATTGGTCTTTTCTT 59.467 40.000 22.66 8.83 33.78 2.52
5519 9903 6.039829 GTGAGAGTCCAATTGGTCTTTTCTTT 59.960 38.462 22.66 9.45 33.78 2.52
5520 9904 6.607198 TGAGAGTCCAATTGGTCTTTTCTTTT 59.393 34.615 22.66 1.11 33.78 2.27
5521 9905 7.124147 TGAGAGTCCAATTGGTCTTTTCTTTTT 59.876 33.333 22.66 0.43 33.78 1.94
5564 9948 8.871686 AAAAAGAGCGTATTTTCATCAGTTTT 57.128 26.923 0.00 0.00 0.00 2.43
5565 9949 8.871686 AAAAGAGCGTATTTTCATCAGTTTTT 57.128 26.923 0.00 0.00 0.00 1.94
5603 9987 7.186570 CCAAATATGGTTTCTTGAAATCCCT 57.813 36.000 4.19 2.42 42.18 4.20
5604 9988 8.305046 CCAAATATGGTTTCTTGAAATCCCTA 57.695 34.615 4.19 4.10 42.18 3.53
5605 9989 8.416329 CCAAATATGGTTTCTTGAAATCCCTAG 58.584 37.037 4.19 0.00 42.18 3.02
5606 9990 8.416329 CAAATATGGTTTCTTGAAATCCCTAGG 58.584 37.037 0.06 0.06 0.00 3.02
5607 9991 5.796502 ATGGTTTCTTGAAATCCCTAGGA 57.203 39.130 11.48 0.00 35.55 2.94
5608 9992 5.796502 TGGTTTCTTGAAATCCCTAGGAT 57.203 39.130 11.48 0.00 45.46 3.24
5609 9993 6.901615 TGGTTTCTTGAAATCCCTAGGATA 57.098 37.500 11.48 0.00 42.27 2.59
5610 9994 6.659824 TGGTTTCTTGAAATCCCTAGGATAC 58.340 40.000 11.48 0.00 42.27 2.24
5611 9995 6.216662 TGGTTTCTTGAAATCCCTAGGATACA 59.783 38.462 11.48 0.16 42.27 2.29
5612 9996 6.542735 GGTTTCTTGAAATCCCTAGGATACAC 59.457 42.308 11.48 0.00 42.27 2.90
5613 9997 6.884472 TTCTTGAAATCCCTAGGATACACA 57.116 37.500 11.48 2.05 42.27 3.72
5614 9998 6.884472 TCTTGAAATCCCTAGGATACACAA 57.116 37.500 11.48 9.94 42.27 3.33
5615 9999 6.650120 TCTTGAAATCCCTAGGATACACAAC 58.350 40.000 11.48 0.00 42.27 3.32
5616 10000 6.443849 TCTTGAAATCCCTAGGATACACAACT 59.556 38.462 11.48 0.00 42.27 3.16
5617 10001 6.636454 TGAAATCCCTAGGATACACAACTT 57.364 37.500 11.48 0.00 42.27 2.66
5618 10002 6.650120 TGAAATCCCTAGGATACACAACTTC 58.350 40.000 11.48 2.28 42.27 3.01
5619 10003 6.214615 TGAAATCCCTAGGATACACAACTTCA 59.785 38.462 11.48 4.63 42.27 3.02
5620 10004 6.831664 AATCCCTAGGATACACAACTTCAT 57.168 37.500 11.48 0.00 42.27 2.57
5621 10005 5.614324 TCCCTAGGATACACAACTTCATG 57.386 43.478 11.48 0.00 41.41 3.07
5622 10006 5.030147 TCCCTAGGATACACAACTTCATGT 58.970 41.667 11.48 0.00 41.41 3.21
5623 10007 5.128827 TCCCTAGGATACACAACTTCATGTC 59.871 44.000 11.48 0.00 41.41 3.06
5624 10008 5.360591 CCTAGGATACACAACTTCATGTCC 58.639 45.833 1.05 0.00 41.41 4.02
5625 10009 4.908601 AGGATACACAACTTCATGTCCA 57.091 40.909 0.00 0.00 41.41 4.02
5626 10010 5.241403 AGGATACACAACTTCATGTCCAA 57.759 39.130 0.00 0.00 41.41 3.53
5627 10011 5.819991 AGGATACACAACTTCATGTCCAAT 58.180 37.500 0.00 0.00 41.41 3.16
5628 10012 6.248433 AGGATACACAACTTCATGTCCAATT 58.752 36.000 0.00 0.00 41.41 2.32
5629 10013 6.151648 AGGATACACAACTTCATGTCCAATTG 59.848 38.462 0.00 0.00 41.41 2.32
5630 10014 6.071952 GGATACACAACTTCATGTCCAATTGT 60.072 38.462 4.43 0.00 0.00 2.71
5631 10015 5.596836 ACACAACTTCATGTCCAATTGTT 57.403 34.783 4.43 0.00 0.00 2.83
5632 10016 5.976458 ACACAACTTCATGTCCAATTGTTT 58.024 33.333 4.43 0.00 0.00 2.83
5633 10017 5.811613 ACACAACTTCATGTCCAATTGTTTG 59.188 36.000 4.43 0.00 0.00 2.93
5634 10018 6.041511 CACAACTTCATGTCCAATTGTTTGA 58.958 36.000 4.43 0.00 34.60 2.69
5635 10019 6.702723 CACAACTTCATGTCCAATTGTTTGAT 59.297 34.615 4.43 0.00 34.60 2.57
5636 10020 6.702723 ACAACTTCATGTCCAATTGTTTGATG 59.297 34.615 4.43 6.60 34.60 3.07
5637 10021 6.653526 ACTTCATGTCCAATTGTTTGATGA 57.346 33.333 4.43 4.00 34.60 2.92
5638 10022 6.449698 ACTTCATGTCCAATTGTTTGATGAC 58.550 36.000 4.43 4.18 34.60 3.06
5639 10023 6.266103 ACTTCATGTCCAATTGTTTGATGACT 59.734 34.615 4.43 0.00 34.60 3.41
5640 10024 6.653526 TCATGTCCAATTGTTTGATGACTT 57.346 33.333 4.43 0.00 34.60 3.01
5641 10025 7.053316 TCATGTCCAATTGTTTGATGACTTT 57.947 32.000 4.43 0.00 34.60 2.66
5642 10026 7.147312 TCATGTCCAATTGTTTGATGACTTTC 58.853 34.615 4.43 0.00 34.60 2.62
5643 10027 6.462552 TGTCCAATTGTTTGATGACTTTCA 57.537 33.333 4.43 0.00 34.60 2.69
5644 10028 7.053316 TGTCCAATTGTTTGATGACTTTCAT 57.947 32.000 4.43 0.00 40.34 2.57
5645 10029 7.499292 TGTCCAATTGTTTGATGACTTTCATT 58.501 30.769 4.43 0.00 37.20 2.57
5646 10030 7.652909 TGTCCAATTGTTTGATGACTTTCATTC 59.347 33.333 4.43 0.00 37.20 2.67
5647 10031 7.652909 GTCCAATTGTTTGATGACTTTCATTCA 59.347 33.333 4.43 0.00 37.20 2.57
5648 10032 8.369424 TCCAATTGTTTGATGACTTTCATTCAT 58.631 29.630 4.43 0.00 37.20 2.57
5649 10033 9.642327 CCAATTGTTTGATGACTTTCATTCATA 57.358 29.630 4.43 0.00 37.20 2.15
5652 10036 9.850628 ATTGTTTGATGACTTTCATTCATACTG 57.149 29.630 0.00 0.00 37.20 2.74
5653 10037 7.307694 TGTTTGATGACTTTCATTCATACTGC 58.692 34.615 0.00 0.00 37.20 4.40
5654 10038 7.040548 TGTTTGATGACTTTCATTCATACTGCA 60.041 33.333 0.00 0.00 37.20 4.41
5655 10039 7.634671 TTGATGACTTTCATTCATACTGCAT 57.365 32.000 0.00 0.00 37.20 3.96
5656 10040 7.255491 TGATGACTTTCATTCATACTGCATC 57.745 36.000 0.00 0.00 37.20 3.91
5657 10041 6.824704 TGATGACTTTCATTCATACTGCATCA 59.175 34.615 0.00 0.00 37.20 3.07
5658 10042 7.337436 TGATGACTTTCATTCATACTGCATCAA 59.663 33.333 0.00 0.00 37.20 2.57
5659 10043 7.451501 TGACTTTCATTCATACTGCATCAAA 57.548 32.000 0.00 0.00 0.00 2.69
5660 10044 7.884257 TGACTTTCATTCATACTGCATCAAAA 58.116 30.769 0.00 0.00 0.00 2.44
5661 10045 7.809331 TGACTTTCATTCATACTGCATCAAAAC 59.191 33.333 0.00 0.00 0.00 2.43
5662 10046 7.660112 ACTTTCATTCATACTGCATCAAAACA 58.340 30.769 0.00 0.00 0.00 2.83
5663 10047 8.308931 ACTTTCATTCATACTGCATCAAAACAT 58.691 29.630 0.00 0.00 0.00 2.71
5664 10048 9.791820 CTTTCATTCATACTGCATCAAAACATA 57.208 29.630 0.00 0.00 0.00 2.29
5666 10050 9.738832 TTCATTCATACTGCATCAAAACATATG 57.261 29.630 0.00 0.00 0.00 1.78
5667 10051 9.122779 TCATTCATACTGCATCAAAACATATGA 57.877 29.630 10.38 0.00 0.00 2.15
5668 10052 9.394477 CATTCATACTGCATCAAAACATATGAG 57.606 33.333 10.38 0.00 31.26 2.90
5669 10053 6.962686 TCATACTGCATCAAAACATATGAGC 58.037 36.000 10.38 2.54 0.00 4.26
5670 10054 6.769341 TCATACTGCATCAAAACATATGAGCT 59.231 34.615 10.38 0.00 0.00 4.09
5671 10055 5.909621 ACTGCATCAAAACATATGAGCTT 57.090 34.783 10.38 0.00 0.00 3.74
5672 10056 6.276832 ACTGCATCAAAACATATGAGCTTT 57.723 33.333 10.38 3.29 0.00 3.51
5673 10057 7.395190 ACTGCATCAAAACATATGAGCTTTA 57.605 32.000 10.38 0.00 0.00 1.85
5674 10058 8.004087 ACTGCATCAAAACATATGAGCTTTAT 57.996 30.769 10.38 0.00 0.00 1.40
5675 10059 9.123902 ACTGCATCAAAACATATGAGCTTTATA 57.876 29.630 10.38 0.00 0.00 0.98
5768 10152 6.879276 TCCTATATAGTGTAGCAGTGTGAC 57.121 41.667 8.92 0.00 0.00 3.67
5769 10153 5.768662 TCCTATATAGTGTAGCAGTGTGACC 59.231 44.000 8.92 0.00 0.00 4.02
5770 10154 5.770663 CCTATATAGTGTAGCAGTGTGACCT 59.229 44.000 8.92 0.00 0.00 3.85
5771 10155 6.940867 CCTATATAGTGTAGCAGTGTGACCTA 59.059 42.308 8.92 0.00 0.00 3.08
5772 10156 7.612244 CCTATATAGTGTAGCAGTGTGACCTAT 59.388 40.741 8.92 3.32 0.00 2.57
5773 10157 3.876274 AGTGTAGCAGTGTGACCTATG 57.124 47.619 0.00 0.00 0.00 2.23
5774 10158 3.431415 AGTGTAGCAGTGTGACCTATGA 58.569 45.455 0.00 0.00 0.00 2.15
5775 10159 4.026744 AGTGTAGCAGTGTGACCTATGAT 58.973 43.478 0.00 0.00 0.00 2.45
5776 10160 5.201243 AGTGTAGCAGTGTGACCTATGATA 58.799 41.667 0.00 0.00 0.00 2.15
5777 10161 5.300539 AGTGTAGCAGTGTGACCTATGATAG 59.699 44.000 0.00 0.00 0.00 2.08
5791 10175 6.248569 CCTATGATAGGTACACCCAAAACT 57.751 41.667 10.41 0.00 41.18 2.66
5792 10176 6.055588 CCTATGATAGGTACACCCAAAACTG 58.944 44.000 10.41 0.00 41.18 3.16
5793 10177 4.986054 TGATAGGTACACCCAAAACTGT 57.014 40.909 0.00 0.00 36.42 3.55
5794 10178 4.901868 TGATAGGTACACCCAAAACTGTC 58.098 43.478 0.00 0.00 36.42 3.51
5795 10179 2.651382 AGGTACACCCAAAACTGTCC 57.349 50.000 0.00 0.00 36.42 4.02
5796 10180 1.144298 AGGTACACCCAAAACTGTCCC 59.856 52.381 0.00 0.00 36.42 4.46
5797 10181 1.612676 GTACACCCAAAACTGTCCCC 58.387 55.000 0.00 0.00 0.00 4.81
5798 10182 1.133730 GTACACCCAAAACTGTCCCCA 60.134 52.381 0.00 0.00 0.00 4.96
5799 10183 0.106217 ACACCCAAAACTGTCCCCAG 60.106 55.000 0.00 0.00 44.68 4.45
5800 10184 0.184933 CACCCAAAACTGTCCCCAGA 59.815 55.000 0.00 0.00 41.50 3.86
5801 10185 0.930726 ACCCAAAACTGTCCCCAGAA 59.069 50.000 0.00 0.00 41.50 3.02
5802 10186 1.503347 ACCCAAAACTGTCCCCAGAAT 59.497 47.619 0.00 0.00 41.50 2.40
5803 10187 2.719705 ACCCAAAACTGTCCCCAGAATA 59.280 45.455 0.00 0.00 41.50 1.75
5804 10188 3.336694 ACCCAAAACTGTCCCCAGAATAT 59.663 43.478 0.00 0.00 41.50 1.28
5805 10189 3.954258 CCCAAAACTGTCCCCAGAATATC 59.046 47.826 0.00 0.00 41.50 1.63
5806 10190 3.954258 CCAAAACTGTCCCCAGAATATCC 59.046 47.826 0.00 0.00 41.50 2.59
5807 10191 4.325344 CCAAAACTGTCCCCAGAATATCCT 60.325 45.833 0.00 0.00 41.50 3.24
5808 10192 5.104109 CCAAAACTGTCCCCAGAATATCCTA 60.104 44.000 0.00 0.00 41.50 2.94
5809 10193 5.632034 AAACTGTCCCCAGAATATCCTAC 57.368 43.478 0.00 0.00 41.50 3.18
5810 10194 4.280789 ACTGTCCCCAGAATATCCTACA 57.719 45.455 0.00 0.00 41.50 2.74
5811 10195 4.832492 ACTGTCCCCAGAATATCCTACAT 58.168 43.478 0.00 0.00 41.50 2.29
5812 10196 4.594920 ACTGTCCCCAGAATATCCTACATG 59.405 45.833 0.00 0.00 41.50 3.21
5813 10197 4.826616 TGTCCCCAGAATATCCTACATGA 58.173 43.478 0.00 0.00 0.00 3.07
5814 10198 4.593206 TGTCCCCAGAATATCCTACATGAC 59.407 45.833 0.00 0.00 0.00 3.06
5815 10199 4.841246 GTCCCCAGAATATCCTACATGACT 59.159 45.833 0.00 0.00 0.00 3.41
5816 10200 5.308237 GTCCCCAGAATATCCTACATGACTT 59.692 44.000 0.00 0.00 0.00 3.01
5817 10201 5.307976 TCCCCAGAATATCCTACATGACTTG 59.692 44.000 0.00 0.00 0.00 3.16
5818 10202 4.999950 CCCAGAATATCCTACATGACTTGC 59.000 45.833 0.00 0.00 0.00 4.01
5819 10203 5.455183 CCCAGAATATCCTACATGACTTGCA 60.455 44.000 0.00 0.00 0.00 4.08
5820 10204 6.236409 CCAGAATATCCTACATGACTTGCAT 58.764 40.000 0.00 0.00 37.85 3.96
5831 10215 3.965379 TGACTTGCATGCCATTGATTT 57.035 38.095 16.68 0.00 0.00 2.17
5832 10216 5.601583 ATGACTTGCATGCCATTGATTTA 57.398 34.783 16.68 0.00 35.42 1.40
5833 10217 4.746729 TGACTTGCATGCCATTGATTTAC 58.253 39.130 16.68 0.00 0.00 2.01
5834 10218 4.220163 TGACTTGCATGCCATTGATTTACA 59.780 37.500 16.68 0.00 0.00 2.41
5835 10219 4.751060 ACTTGCATGCCATTGATTTACAG 58.249 39.130 16.68 0.00 0.00 2.74
5836 10220 3.167921 TGCATGCCATTGATTTACAGC 57.832 42.857 16.68 0.00 0.00 4.40
5837 10221 2.496470 TGCATGCCATTGATTTACAGCA 59.504 40.909 16.68 0.00 33.12 4.41
5838 10222 3.133183 TGCATGCCATTGATTTACAGCAT 59.867 39.130 16.68 0.00 38.06 3.79
5839 10223 3.739300 GCATGCCATTGATTTACAGCATC 59.261 43.478 6.36 0.00 36.32 3.91
5840 10224 3.696281 TGCCATTGATTTACAGCATCG 57.304 42.857 0.00 0.00 0.00 3.84
5841 10225 2.358582 TGCCATTGATTTACAGCATCGG 59.641 45.455 0.00 0.00 0.00 4.18
5842 10226 2.618241 GCCATTGATTTACAGCATCGGA 59.382 45.455 0.00 0.00 0.00 4.55
5843 10227 3.548818 GCCATTGATTTACAGCATCGGAC 60.549 47.826 0.00 0.00 0.00 4.79
5844 10228 3.303329 CCATTGATTTACAGCATCGGACG 60.303 47.826 0.00 0.00 0.00 4.79
5845 10229 1.934589 TGATTTACAGCATCGGACGG 58.065 50.000 0.00 0.00 0.00 4.79
5846 10230 1.206132 TGATTTACAGCATCGGACGGT 59.794 47.619 0.00 0.00 0.00 4.83
5847 10231 1.593006 GATTTACAGCATCGGACGGTG 59.407 52.381 1.27 1.27 37.86 4.94
5848 10232 0.319083 TTTACAGCATCGGACGGTGT 59.681 50.000 13.59 13.59 46.21 4.16
5849 10233 0.319083 TTACAGCATCGGACGGTGTT 59.681 50.000 14.29 0.00 42.13 3.32
5850 10234 1.175654 TACAGCATCGGACGGTGTTA 58.824 50.000 14.29 0.00 42.13 2.41
5851 10235 0.319083 ACAGCATCGGACGGTGTTAA 59.681 50.000 2.73 0.00 42.13 2.01
5852 10236 1.270412 ACAGCATCGGACGGTGTTAAA 60.270 47.619 2.73 0.00 42.13 1.52
5853 10237 2.006888 CAGCATCGGACGGTGTTAAAT 58.993 47.619 6.84 0.00 0.00 1.40
5854 10238 2.006888 AGCATCGGACGGTGTTAAATG 58.993 47.619 6.84 0.00 0.00 2.32
5855 10239 1.063469 GCATCGGACGGTGTTAAATGG 59.937 52.381 6.84 0.00 0.00 3.16
5856 10240 1.668751 CATCGGACGGTGTTAAATGGG 59.331 52.381 0.00 0.00 0.00 4.00
5857 10241 0.674269 TCGGACGGTGTTAAATGGGC 60.674 55.000 0.00 0.00 0.00 5.36
5858 10242 1.798087 GGACGGTGTTAAATGGGCG 59.202 57.895 0.00 0.00 0.00 6.13
5859 10243 0.674269 GGACGGTGTTAAATGGGCGA 60.674 55.000 0.00 0.00 0.00 5.54
5860 10244 1.158434 GACGGTGTTAAATGGGCGAA 58.842 50.000 0.00 0.00 0.00 4.70
5861 10245 1.536331 GACGGTGTTAAATGGGCGAAA 59.464 47.619 0.00 0.00 0.00 3.46
5862 10246 1.267533 ACGGTGTTAAATGGGCGAAAC 59.732 47.619 0.00 0.00 0.00 2.78
5863 10247 1.401800 CGGTGTTAAATGGGCGAAACC 60.402 52.381 0.00 0.00 37.93 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 113 3.073678 CACCACAAGTTGCATGCTAGTA 58.926 45.455 20.33 0.00 0.00 1.82
89 114 1.881973 CACCACAAGTTGCATGCTAGT 59.118 47.619 20.33 11.82 0.00 2.57
90 115 1.401931 GCACCACAAGTTGCATGCTAG 60.402 52.381 20.33 6.56 34.47 3.42
202 227 2.101582 AGGACCATCTAGATCGTGCAAC 59.898 50.000 20.76 2.33 0.00 4.17
394 437 2.280308 TAACTACTTGATGGCCCCCT 57.720 50.000 0.00 0.00 0.00 4.79
395 438 2.224793 GGATAACTACTTGATGGCCCCC 60.225 54.545 0.00 0.00 0.00 5.40
400 443 3.181465 ACGGCAGGATAACTACTTGATGG 60.181 47.826 0.00 0.00 0.00 3.51
419 464 0.591170 CTAAAACCACAGCCACACGG 59.409 55.000 0.00 0.00 0.00 4.94
445 490 2.499289 ACCTATCAGTGAGGAGCTTGTG 59.501 50.000 5.46 0.00 37.53 3.33
507 553 9.944376 AAGTTTTGACTGAGATATACTGCTTTA 57.056 29.630 0.00 0.00 0.00 1.85
517 563 5.513094 CCTGACCCAAGTTTTGACTGAGATA 60.513 44.000 0.00 0.00 0.00 1.98
552 605 2.034053 GGCAGAGACGTTCAGATAGAGG 59.966 54.545 0.00 0.00 0.00 3.69
573 627 1.511850 TGTGTTGCGGATTGACTGAG 58.488 50.000 0.00 0.00 0.00 3.35
605 659 2.887152 GTCAGCTTCCAGGTCAACAATT 59.113 45.455 0.00 0.00 0.00 2.32
634 688 2.079158 TCTGCTTTGCTGGAAATCTCG 58.921 47.619 0.00 0.00 0.00 4.04
672 726 1.195442 TCGTTGGGCAGGTCCATGTA 61.195 55.000 0.00 0.00 36.58 2.29
690 744 7.164122 TGGATATGGATTGACTTGCTCTAATC 58.836 38.462 0.00 0.00 0.00 1.75
694 748 5.579753 ATGGATATGGATTGACTTGCTCT 57.420 39.130 0.00 0.00 0.00 4.09
778 832 0.823769 TCGTGTGAGTGTGAGGAGCT 60.824 55.000 0.00 0.00 0.00 4.09
779 833 0.244994 ATCGTGTGAGTGTGAGGAGC 59.755 55.000 0.00 0.00 0.00 4.70
780 834 1.466529 CGATCGTGTGAGTGTGAGGAG 60.467 57.143 7.03 0.00 0.00 3.69
781 835 0.521735 CGATCGTGTGAGTGTGAGGA 59.478 55.000 7.03 0.00 0.00 3.71
782 836 1.073216 GCGATCGTGTGAGTGTGAGG 61.073 60.000 17.81 0.00 0.00 3.86
783 837 1.398762 CGCGATCGTGTGAGTGTGAG 61.399 60.000 20.28 0.00 0.00 3.51
784 838 1.442017 CGCGATCGTGTGAGTGTGA 60.442 57.895 20.28 0.00 0.00 3.58
785 839 2.436539 CCGCGATCGTGTGAGTGTG 61.437 63.158 25.58 6.21 0.00 3.82
786 840 2.126463 CCGCGATCGTGTGAGTGT 60.126 61.111 25.58 0.00 0.00 3.55
787 841 2.880879 CCCGCGATCGTGTGAGTG 60.881 66.667 25.58 10.91 0.00 3.51
788 842 4.796231 GCCCGCGATCGTGTGAGT 62.796 66.667 25.58 0.00 0.00 3.41
910 971 3.005791 TCTCTCTTGCGAGTTGTGAATCA 59.994 43.478 0.00 0.00 38.45 2.57
911 972 3.579709 TCTCTCTTGCGAGTTGTGAATC 58.420 45.455 0.00 0.00 38.45 2.52
912 973 3.583806 CTCTCTCTTGCGAGTTGTGAAT 58.416 45.455 0.00 0.00 38.45 2.57
914 975 1.336332 GCTCTCTCTTGCGAGTTGTGA 60.336 52.381 0.00 1.84 38.45 3.58
923 984 2.542597 CATGACTCTGCTCTCTCTTGC 58.457 52.381 0.00 0.00 0.00 4.01
956 1017 1.400494 GCATTATTTATAGGCGGCGGG 59.600 52.381 9.78 0.00 0.00 6.13
1032 1093 0.461548 CCACTCTAGCTGAATGGCGA 59.538 55.000 0.00 0.00 35.14 5.54
1035 1096 1.209019 AGCACCACTCTAGCTGAATGG 59.791 52.381 10.75 10.75 46.68 3.16
1046 1107 2.429971 GGTTAGGTAGGTAGCACCACTC 59.570 54.545 13.58 5.43 41.95 3.51
1048 1109 1.483827 GGGTTAGGTAGGTAGCACCAC 59.516 57.143 13.58 6.11 41.95 4.16
1050 1111 0.749049 CGGGTTAGGTAGGTAGCACC 59.251 60.000 0.00 0.00 38.99 5.01
1052 1113 0.336048 ACCGGGTTAGGTAGGTAGCA 59.664 55.000 6.32 0.00 43.89 3.49
1054 1115 2.428530 GTCAACCGGGTTAGGTAGGTAG 59.571 54.545 12.95 0.00 45.21 3.18
1056 1117 1.269958 GTCAACCGGGTTAGGTAGGT 58.730 55.000 12.95 0.00 45.21 3.08
1057 1118 0.538584 GGTCAACCGGGTTAGGTAGG 59.461 60.000 12.95 0.00 45.21 3.18
1202 1289 5.467063 GCCAACTTGATGTATAAGTAGGAGC 59.533 44.000 0.00 0.00 37.39 4.70
1224 1311 1.867166 GCTCCTCCGTATAACAAGCC 58.133 55.000 0.00 0.00 0.00 4.35
1226 1313 3.309388 CATCGCTCCTCCGTATAACAAG 58.691 50.000 0.00 0.00 0.00 3.16
1281 1375 2.740055 CCTCACCAGTCAGCACGC 60.740 66.667 0.00 0.00 0.00 5.34
1282 1376 2.740055 GCCTCACCAGTCAGCACG 60.740 66.667 0.00 0.00 0.00 5.34
1311 1406 0.103026 TGATCTCGAACGCCTGGATG 59.897 55.000 0.00 0.00 0.00 3.51
1524 1619 2.688958 GTGAAGCAGGAGTAGTACCGAT 59.311 50.000 0.00 0.00 0.00 4.18
1533 1628 1.185618 TGCGGTAGTGAAGCAGGAGT 61.186 55.000 0.00 0.00 35.81 3.85
1538 1633 1.581934 GCATATGCGGTAGTGAAGCA 58.418 50.000 12.82 0.00 45.46 3.91
1550 1645 7.920151 AGATTGATAGAGAGATTACGCATATGC 59.080 37.037 18.08 18.08 37.78 3.14
1555 1650 7.121907 AGCATAGATTGATAGAGAGATTACGCA 59.878 37.037 0.00 0.00 0.00 5.24
1556 1651 7.479980 AGCATAGATTGATAGAGAGATTACGC 58.520 38.462 0.00 0.00 0.00 4.42
1558 1653 9.787532 GTGAGCATAGATTGATAGAGAGATTAC 57.212 37.037 0.00 0.00 0.00 1.89
1559 1654 8.965819 GGTGAGCATAGATTGATAGAGAGATTA 58.034 37.037 0.00 0.00 0.00 1.75
1561 1656 6.952938 TGGTGAGCATAGATTGATAGAGAGAT 59.047 38.462 0.00 0.00 0.00 2.75
1563 1658 6.587206 TGGTGAGCATAGATTGATAGAGAG 57.413 41.667 0.00 0.00 0.00 3.20
1567 1662 5.646793 CCCATTGGTGAGCATAGATTGATAG 59.353 44.000 1.20 0.00 0.00 2.08
1569 1664 4.141088 ACCCATTGGTGAGCATAGATTGAT 60.141 41.667 1.20 0.00 45.58 2.57
1570 1665 3.202818 ACCCATTGGTGAGCATAGATTGA 59.797 43.478 1.20 0.00 45.58 2.57
1572 1667 3.959495 ACCCATTGGTGAGCATAGATT 57.041 42.857 1.20 0.00 45.58 2.40
1610 1930 6.484643 CCTCATCTTCTTGTCTTGAACTTGAA 59.515 38.462 0.00 0.00 0.00 2.69
1613 1933 6.179906 TCCTCATCTTCTTGTCTTGAACTT 57.820 37.500 0.00 0.00 0.00 2.66
1615 1935 6.226787 TCTTCCTCATCTTCTTGTCTTGAAC 58.773 40.000 0.00 0.00 0.00 3.18
1653 1973 1.847818 GGTCGCAAAGGAAAAACACC 58.152 50.000 0.00 0.00 0.00 4.16
1668 1988 0.388134 AACAGTCAATCGGTCGGTCG 60.388 55.000 0.00 0.00 0.00 4.79
1797 2119 9.551734 AAACAAAAACTACTCCTAATTACGAGT 57.448 29.630 17.59 17.59 42.03 4.18
1806 2129 8.403236 GCTTTCAGAAAACAAAAACTACTCCTA 58.597 33.333 0.00 0.00 0.00 2.94
1811 2134 7.688167 GCTTTGCTTTCAGAAAACAAAAACTAC 59.312 33.333 19.99 8.34 31.37 2.73
1832 2162 3.799963 TGTGTGTAGTTGTACTCGCTTTG 59.200 43.478 0.00 0.00 35.24 2.77
1840 2170 1.523934 GGCGTGTGTGTGTAGTTGTAC 59.476 52.381 0.00 0.00 0.00 2.90
1843 2173 0.581529 CTGGCGTGTGTGTGTAGTTG 59.418 55.000 0.00 0.00 0.00 3.16
1849 2179 3.279116 CCCACTGGCGTGTGTGTG 61.279 66.667 9.09 0.00 39.55 3.82
1850 2180 2.337879 ATTCCCACTGGCGTGTGTGT 62.338 55.000 9.09 0.00 39.55 3.72
1851 2181 1.172180 AATTCCCACTGGCGTGTGTG 61.172 55.000 9.09 2.17 39.55 3.82
1852 2182 0.467290 AAATTCCCACTGGCGTGTGT 60.467 50.000 9.09 0.00 39.55 3.72
1862 2192 5.180304 ACAACAACAACAAACAAATTCCCAC 59.820 36.000 0.00 0.00 0.00 4.61
1887 2217 0.689080 TTGTTTTCAGGCAAGCCCCA 60.689 50.000 7.62 0.00 36.58 4.96
1914 2244 6.753107 AGTAACACTAGCACAACTTTGTTT 57.247 33.333 0.00 0.00 39.91 2.83
1917 2247 4.970003 GCAAGTAACACTAGCACAACTTTG 59.030 41.667 0.00 0.00 0.00 2.77
1949 2288 1.271543 TGGGATTGTGAGAGTGCCAAG 60.272 52.381 0.00 0.00 29.93 3.61
1953 2292 1.002430 TGACTGGGATTGTGAGAGTGC 59.998 52.381 0.00 0.00 0.00 4.40
2052 2441 2.894765 CCGGGGCTTTCCTTCTTTAAAA 59.105 45.455 0.00 0.00 35.33 1.52
2053 2442 2.521126 CCGGGGCTTTCCTTCTTTAAA 58.479 47.619 0.00 0.00 35.33 1.52
2054 2443 1.889262 GCCGGGGCTTTCCTTCTTTAA 60.889 52.381 2.18 0.00 38.26 1.52
2055 2444 0.323087 GCCGGGGCTTTCCTTCTTTA 60.323 55.000 2.18 0.00 38.26 1.85
2056 2445 1.606601 GCCGGGGCTTTCCTTCTTT 60.607 57.895 2.18 0.00 38.26 2.52
2057 2446 2.035783 GCCGGGGCTTTCCTTCTT 59.964 61.111 2.18 0.00 38.26 2.52
2058 2447 4.048470 GGCCGGGGCTTTCCTTCT 62.048 66.667 14.22 0.00 41.60 2.85
2059 2448 3.997400 GAGGCCGGGGCTTTCCTTC 62.997 68.421 25.20 7.05 38.98 3.46
2060 2449 4.048470 GAGGCCGGGGCTTTCCTT 62.048 66.667 25.20 0.11 38.98 3.36
2062 2451 4.803908 CAGAGGCCGGGGCTTTCC 62.804 72.222 25.20 12.05 38.98 3.13
2067 2456 4.189580 TAATGCAGAGGCCGGGGC 62.190 66.667 13.58 13.58 40.13 5.80
2068 2457 1.983119 TTCTAATGCAGAGGCCGGGG 61.983 60.000 2.18 0.00 40.13 5.73
2069 2458 0.109342 ATTCTAATGCAGAGGCCGGG 59.891 55.000 2.18 0.00 40.13 5.73
2070 2459 1.202687 TCATTCTAATGCAGAGGCCGG 60.203 52.381 0.00 0.00 40.13 6.13
2071 2460 2.245159 TCATTCTAATGCAGAGGCCG 57.755 50.000 0.00 0.00 40.13 6.13
2072 2461 3.484407 ACATCATTCTAATGCAGAGGCC 58.516 45.455 0.00 0.00 40.13 5.19
2073 2462 5.123502 CCATACATCATTCTAATGCAGAGGC 59.876 44.000 0.00 0.00 41.68 4.70
2074 2463 6.470278 TCCATACATCATTCTAATGCAGAGG 58.530 40.000 0.00 0.00 36.36 3.69
2075 2464 6.092396 GCTCCATACATCATTCTAATGCAGAG 59.908 42.308 0.00 0.00 36.36 3.35
2076 2465 5.936372 GCTCCATACATCATTCTAATGCAGA 59.064 40.000 0.00 0.00 36.36 4.26
2077 2466 5.123502 GGCTCCATACATCATTCTAATGCAG 59.876 44.000 0.00 0.00 36.36 4.41
2078 2467 5.005740 GGCTCCATACATCATTCTAATGCA 58.994 41.667 0.00 0.00 36.36 3.96
2079 2468 5.005740 TGGCTCCATACATCATTCTAATGC 58.994 41.667 0.00 0.00 36.36 3.56
2080 2469 7.698506 AATGGCTCCATACATCATTCTAATG 57.301 36.000 1.24 0.00 35.31 1.90
2081 2470 8.716674 AAAATGGCTCCATACATCATTCTAAT 57.283 30.769 1.24 0.00 35.31 1.73
2082 2471 7.779326 TGAAAATGGCTCCATACATCATTCTAA 59.221 33.333 1.24 0.00 35.31 2.10
2083 2472 7.289310 TGAAAATGGCTCCATACATCATTCTA 58.711 34.615 1.24 0.00 35.31 2.10
2084 2473 6.131264 TGAAAATGGCTCCATACATCATTCT 58.869 36.000 1.24 0.00 35.31 2.40
2085 2474 6.395426 TGAAAATGGCTCCATACATCATTC 57.605 37.500 1.24 2.40 35.31 2.67
2086 2475 6.989155 ATGAAAATGGCTCCATACATCATT 57.011 33.333 13.62 0.00 35.31 2.57
2087 2476 6.989155 AATGAAAATGGCTCCATACATCAT 57.011 33.333 13.62 13.62 36.04 2.45
2088 2477 7.779326 TCTTAATGAAAATGGCTCCATACATCA 59.221 33.333 1.24 7.54 35.31 3.07
2089 2478 8.169977 TCTTAATGAAAATGGCTCCATACATC 57.830 34.615 1.24 2.40 35.31 3.06
2090 2479 8.537728 TTCTTAATGAAAATGGCTCCATACAT 57.462 30.769 1.24 6.18 35.31 2.29
2091 2480 7.953005 TTCTTAATGAAAATGGCTCCATACA 57.047 32.000 1.24 4.24 35.31 2.29
2133 2522 9.810231 CAATAAAAATCCATTGCAAAACAGTAC 57.190 29.630 1.71 0.00 0.00 2.73
2134 2523 8.997323 CCAATAAAAATCCATTGCAAAACAGTA 58.003 29.630 1.71 0.00 32.00 2.74
2135 2524 7.501892 ACCAATAAAAATCCATTGCAAAACAGT 59.498 29.630 1.71 0.00 32.00 3.55
2136 2525 7.873910 ACCAATAAAAATCCATTGCAAAACAG 58.126 30.769 1.71 0.00 32.00 3.16
2139 2528 8.160106 ACCTACCAATAAAAATCCATTGCAAAA 58.840 29.630 1.71 0.00 32.00 2.44
2157 2546 6.605594 ACAGATGAAAAGAAAACACCTACCAA 59.394 34.615 0.00 0.00 0.00 3.67
2159 2548 6.294010 GGACAGATGAAAAGAAAACACCTACC 60.294 42.308 0.00 0.00 0.00 3.18
2164 2553 6.377327 TGAGGACAGATGAAAAGAAAACAC 57.623 37.500 0.00 0.00 0.00 3.32
2165 2554 5.532406 CCTGAGGACAGATGAAAAGAAAACA 59.468 40.000 0.00 0.00 46.03 2.83
2166 2555 5.048434 CCCTGAGGACAGATGAAAAGAAAAC 60.048 44.000 0.00 0.00 46.03 2.43
2167 2556 5.072741 CCCTGAGGACAGATGAAAAGAAAA 58.927 41.667 0.00 0.00 46.03 2.29
2171 2560 2.026449 AGCCCTGAGGACAGATGAAAAG 60.026 50.000 0.00 0.00 46.03 2.27
2172 2561 1.988107 AGCCCTGAGGACAGATGAAAA 59.012 47.619 0.00 0.00 46.03 2.29
2173 2562 1.661463 AGCCCTGAGGACAGATGAAA 58.339 50.000 0.00 0.00 46.03 2.69
2174 2563 1.556911 GAAGCCCTGAGGACAGATGAA 59.443 52.381 0.00 0.00 46.03 2.57
2175 2564 1.198713 GAAGCCCTGAGGACAGATGA 58.801 55.000 0.00 0.00 46.03 2.92
2176 2565 0.907486 TGAAGCCCTGAGGACAGATG 59.093 55.000 0.00 0.00 46.03 2.90
2177 2566 1.890552 ATGAAGCCCTGAGGACAGAT 58.109 50.000 0.00 0.00 46.03 2.90
2178 2567 2.111384 GTATGAAGCCCTGAGGACAGA 58.889 52.381 0.00 0.00 46.03 3.41
2179 2568 2.114616 AGTATGAAGCCCTGAGGACAG 58.885 52.381 0.00 0.00 43.12 3.51
2389 2787 1.066573 AGACTCTTGGCATTGTCGGAG 60.067 52.381 8.76 8.76 34.92 4.63
2726 3238 1.262683 GTCAGAACACAAGCACTCAGC 59.737 52.381 0.00 0.00 46.19 4.26
2727 3239 2.554142 TGTCAGAACACAAGCACTCAG 58.446 47.619 0.00 0.00 0.00 3.35
2728 3240 2.689553 TGTCAGAACACAAGCACTCA 57.310 45.000 0.00 0.00 0.00 3.41
2729 3241 3.375299 AGTTTGTCAGAACACAAGCACTC 59.625 43.478 3.49 0.00 39.31 3.51
2730 3242 3.347216 AGTTTGTCAGAACACAAGCACT 58.653 40.909 3.49 0.00 39.31 4.40
2731 3243 3.764885 AGTTTGTCAGAACACAAGCAC 57.235 42.857 3.49 0.00 39.31 4.40
2732 3244 4.484236 CAAAGTTTGTCAGAACACAAGCA 58.516 39.130 7.48 0.00 39.31 3.91
2733 3245 3.304293 GCAAAGTTTGTCAGAACACAAGC 59.696 43.478 16.70 0.00 37.57 4.01
2734 3246 3.543494 CGCAAAGTTTGTCAGAACACAAG 59.457 43.478 16.70 0.00 37.57 3.16
2767 3279 1.877443 CGGTCCAAACTTCGTCCAATT 59.123 47.619 0.00 0.00 0.00 2.32
2768 3280 1.202722 ACGGTCCAAACTTCGTCCAAT 60.203 47.619 0.00 0.00 0.00 3.16
2878 3434 5.292589 GTCTTGGCCAAAATTCTTGCATATG 59.707 40.000 20.91 2.28 0.00 1.78
2931 3487 7.891825 ATCTAACCATAGAGTACTAGAGGGA 57.108 40.000 12.78 0.49 41.36 4.20
2934 3490 9.953565 AGCTAATCTAACCATAGAGTACTAGAG 57.046 37.037 0.00 0.00 41.36 2.43
3092 4033 1.065199 AGATCTGATCGGCAGGCAAAA 60.065 47.619 11.73 0.00 44.98 2.44
3098 4039 3.145286 TCTGACTAGATCTGATCGGCAG 58.855 50.000 17.45 17.45 46.31 4.85
3130 4078 1.392853 GCAGAGAGCACATCGTTTCTG 59.607 52.381 0.00 0.00 44.79 3.02
3148 4096 1.750206 ACAGACACAACTTGCATTGCA 59.250 42.857 7.38 7.38 36.47 4.08
3149 4097 2.121786 CACAGACACAACTTGCATTGC 58.878 47.619 0.46 0.46 32.47 3.56
3150 4098 2.099592 ACCACAGACACAACTTGCATTG 59.900 45.455 0.00 0.00 35.59 2.82
3151 4099 2.099592 CACCACAGACACAACTTGCATT 59.900 45.455 0.00 0.00 0.00 3.56
3152 4100 1.677576 CACCACAGACACAACTTGCAT 59.322 47.619 0.00 0.00 0.00 3.96
3168 4116 4.020543 ACAAACCTTTAAGAACTGCACCA 58.979 39.130 0.00 0.00 0.00 4.17
3191 4139 7.099764 ACTGACATCCTAACAGTCAATAAGTG 58.900 38.462 0.00 0.00 41.27 3.16
3242 4193 3.987868 GCAGTCAGTTCTGTCGTTATCAA 59.012 43.478 0.00 0.00 37.70 2.57
3335 4296 1.597742 TTGTTTGCACAGAGAGAGCC 58.402 50.000 0.00 0.00 33.22 4.70
3396 4357 5.996219 TGTGTCAAAATGATGTTAACCTCG 58.004 37.500 2.48 0.00 0.00 4.63
3405 4366 9.850628 ATTCTACATTTCTGTGTCAAAATGATG 57.149 29.630 13.10 7.06 42.71 3.07
3441 4402 7.707035 ACGCAATTGTATCTTGGTTAACAAAAA 59.293 29.630 8.10 0.00 38.91 1.94
3493 4463 7.350110 TCTTTCTTTTGAAAACAGCAAGTTG 57.650 32.000 0.00 0.00 46.42 3.16
3494 4464 7.961325 TTCTTTCTTTTGAAAACAGCAAGTT 57.039 28.000 0.00 0.00 46.42 2.66
3495 4465 7.961325 TTTCTTTCTTTTGAAAACAGCAAGT 57.039 28.000 0.00 0.00 46.42 3.16
3526 5147 0.111089 CAGTTCGCAGCAACTTCGTC 60.111 55.000 7.31 0.00 34.17 4.20
3528 5149 0.792640 ATCAGTTCGCAGCAACTTCG 59.207 50.000 7.31 0.28 34.17 3.79
3536 5157 4.495349 CCTGCAGAATTTATCAGTTCGCAG 60.495 45.833 17.39 15.34 43.36 5.18
4078 6049 0.250234 TGAGCCTCTTCATGAACGGG 59.750 55.000 16.75 15.57 0.00 5.28
4081 6052 1.363744 CGGTGAGCCTCTTCATGAAC 58.636 55.000 3.38 0.00 0.00 3.18
4156 6127 2.514824 GCGACCATGGAGAAGGCC 60.515 66.667 21.47 0.00 0.00 5.19
4405 6382 1.954146 CGTGACCCTGTTCACCGTG 60.954 63.158 0.00 0.00 42.63 4.94
4447 6424 4.717629 TCGTTGTCGCCGAGCCAG 62.718 66.667 0.00 0.00 36.96 4.85
4635 6612 4.142138 GGTTCAGTCTCCATGTAGTAGGTG 60.142 50.000 0.00 0.00 0.00 4.00
4641 6618 5.860941 ATACAGGTTCAGTCTCCATGTAG 57.139 43.478 0.00 0.00 0.00 2.74
4642 6619 6.239317 GCATATACAGGTTCAGTCTCCATGTA 60.239 42.308 0.00 0.00 0.00 2.29
4643 6620 5.453903 GCATATACAGGTTCAGTCTCCATGT 60.454 44.000 0.00 0.00 0.00 3.21
4704 6681 0.613777 ACCTAGCACTTCTTTCCCCG 59.386 55.000 0.00 0.00 0.00 5.73
4742 6719 9.692749 TGCTAATGTACTTTCTATTCCTTATCG 57.307 33.333 0.00 0.00 0.00 2.92
4805 6782 6.631016 TGAAGACTATGCTTTGTGGTAGTAG 58.369 40.000 0.00 0.00 0.00 2.57
4806 6783 6.210784 ACTGAAGACTATGCTTTGTGGTAGTA 59.789 38.462 0.00 0.00 0.00 1.82
4807 6784 5.012148 ACTGAAGACTATGCTTTGTGGTAGT 59.988 40.000 0.00 0.00 0.00 2.73
4846 8992 3.599343 TCTGTTGCTTCATTCGCTATGT 58.401 40.909 0.00 0.00 35.64 2.29
4847 8993 4.808077 ATCTGTTGCTTCATTCGCTATG 57.192 40.909 0.00 0.00 35.45 2.23
4852 9030 3.867493 TCTGCTATCTGTTGCTTCATTCG 59.133 43.478 0.00 0.00 0.00 3.34
4857 9035 3.801594 GCTAGTCTGCTATCTGTTGCTTC 59.198 47.826 0.00 0.00 0.00 3.86
4871 9049 3.393089 AGTGAGGTTTGTGCTAGTCTG 57.607 47.619 0.00 0.00 0.00 3.51
4873 9051 2.808543 CCAAGTGAGGTTTGTGCTAGTC 59.191 50.000 0.00 0.00 0.00 2.59
4874 9052 2.851195 CCAAGTGAGGTTTGTGCTAGT 58.149 47.619 0.00 0.00 0.00 2.57
4875 9053 1.537202 GCCAAGTGAGGTTTGTGCTAG 59.463 52.381 0.00 0.00 0.00 3.42
4889 9270 5.291971 GTTGATTCTTGTTTCATGCCAAGT 58.708 37.500 14.95 2.67 39.25 3.16
5013 9394 7.331440 TGCTAGTAGTACTACTTATCGAGCATC 59.669 40.741 33.65 18.40 42.78 3.91
5035 9416 3.159472 TCTGGAAACTCCGTAACTGCTA 58.841 45.455 0.00 0.00 40.17 3.49
5046 9427 2.893637 TGCTTCGCTATCTGGAAACTC 58.106 47.619 0.00 0.00 0.00 3.01
5056 9437 7.154656 TGTATGAATTCTGTATGCTTCGCTAT 58.845 34.615 7.05 0.00 0.00 2.97
5061 9442 7.076362 CAGCATGTATGAATTCTGTATGCTTC 58.924 38.462 24.16 8.01 45.10 3.86
5101 9482 2.867109 AAGATGGTGTCCTTGGACTG 57.133 50.000 19.11 0.00 0.00 3.51
5102 9483 3.248024 TGTAAGATGGTGTCCTTGGACT 58.752 45.455 19.11 0.49 0.00 3.85
5103 9484 3.260884 TCTGTAAGATGGTGTCCTTGGAC 59.739 47.826 12.54 12.54 38.67 4.02
5104 9485 3.516586 TCTGTAAGATGGTGTCCTTGGA 58.483 45.455 0.00 0.00 38.67 3.53
5105 9486 3.981071 TCTGTAAGATGGTGTCCTTGG 57.019 47.619 0.00 0.00 38.67 3.61
5106 9487 5.491070 TCATTCTGTAAGATGGTGTCCTTG 58.509 41.667 0.00 0.00 46.36 3.61
5107 9488 5.762179 TCATTCTGTAAGATGGTGTCCTT 57.238 39.130 0.00 0.00 46.36 3.36
5108 9489 5.678583 CATCATTCTGTAAGATGGTGTCCT 58.321 41.667 0.00 0.00 46.36 3.85
5134 9515 2.029110 GGCCAACAAATCTAGCAGCAAA 60.029 45.455 0.00 0.00 0.00 3.68
5142 9523 5.241403 TGAAGAAGAGGCCAACAAATCTA 57.759 39.130 5.01 0.00 0.00 1.98
5149 9530 0.037447 AGGCTGAAGAAGAGGCCAAC 59.963 55.000 5.01 0.00 46.23 3.77
5150 9531 0.773644 AAGGCTGAAGAAGAGGCCAA 59.226 50.000 5.01 0.00 46.23 4.52
5151 9532 0.326264 GAAGGCTGAAGAAGAGGCCA 59.674 55.000 5.01 0.00 46.23 5.36
5192 9573 5.245751 AGAACAGCTTGAGAGAAGAGATTCA 59.754 40.000 0.00 0.00 0.00 2.57
5203 9584 1.202582 GCCGTAGAGAACAGCTTGAGA 59.797 52.381 0.00 0.00 0.00 3.27
5210 9591 0.247736 AGGCAAGCCGTAGAGAACAG 59.752 55.000 5.28 0.00 41.95 3.16
5212 9593 1.732809 GAAAGGCAAGCCGTAGAGAAC 59.267 52.381 5.28 0.00 41.95 3.01
5218 9599 2.151202 CAGAAAGAAAGGCAAGCCGTA 58.849 47.619 5.28 0.00 41.95 4.02
5224 9605 2.549754 CGAAGAGCAGAAAGAAAGGCAA 59.450 45.455 0.00 0.00 0.00 4.52
5255 9636 2.531522 ACAATTGCAAGGCTGGAAAC 57.468 45.000 4.94 0.00 36.37 2.78
5262 9643 5.528870 AGTTAAACAGTACAATTGCAAGGC 58.471 37.500 4.94 0.00 0.00 4.35
5394 9778 9.314321 CATCTATGATCACCTACGTTTACTTTT 57.686 33.333 0.00 0.00 0.00 2.27
5395 9779 8.475639 ACATCTATGATCACCTACGTTTACTTT 58.524 33.333 0.00 0.00 0.00 2.66
5396 9780 8.008513 ACATCTATGATCACCTACGTTTACTT 57.991 34.615 0.00 0.00 0.00 2.24
5397 9781 7.584122 ACATCTATGATCACCTACGTTTACT 57.416 36.000 0.00 0.00 0.00 2.24
5398 9782 8.540492 CAAACATCTATGATCACCTACGTTTAC 58.460 37.037 0.00 0.00 0.00 2.01
5399 9783 8.255206 ACAAACATCTATGATCACCTACGTTTA 58.745 33.333 0.00 0.00 0.00 2.01
5400 9784 7.103641 ACAAACATCTATGATCACCTACGTTT 58.896 34.615 0.00 3.12 0.00 3.60
5401 9785 6.640518 ACAAACATCTATGATCACCTACGTT 58.359 36.000 0.00 0.00 0.00 3.99
5402 9786 6.222038 ACAAACATCTATGATCACCTACGT 57.778 37.500 0.00 0.00 0.00 3.57
5403 9787 7.542477 GGATACAAACATCTATGATCACCTACG 59.458 40.741 0.00 0.00 0.00 3.51
5404 9788 8.764524 GGATACAAACATCTATGATCACCTAC 57.235 38.462 0.00 0.00 0.00 3.18
5426 9810 9.712305 GCTTAATAGTATGTCACAGTATTGGAT 57.288 33.333 2.05 0.00 0.00 3.41
5427 9811 8.924303 AGCTTAATAGTATGTCACAGTATTGGA 58.076 33.333 2.05 0.00 0.00 3.53
5435 9819 9.244799 CGATTTGTAGCTTAATAGTATGTCACA 57.755 33.333 0.00 0.00 0.00 3.58
5436 9820 8.700644 CCGATTTGTAGCTTAATAGTATGTCAC 58.299 37.037 0.00 0.00 0.00 3.67
5437 9821 7.384115 GCCGATTTGTAGCTTAATAGTATGTCA 59.616 37.037 0.00 0.00 0.00 3.58
5438 9822 7.148623 GGCCGATTTGTAGCTTAATAGTATGTC 60.149 40.741 0.00 0.00 0.00 3.06
5439 9823 6.649557 GGCCGATTTGTAGCTTAATAGTATGT 59.350 38.462 0.00 0.00 0.00 2.29
5440 9824 6.183360 CGGCCGATTTGTAGCTTAATAGTATG 60.183 42.308 24.07 0.00 0.00 2.39
5441 9825 5.867716 CGGCCGATTTGTAGCTTAATAGTAT 59.132 40.000 24.07 0.00 0.00 2.12
5442 9826 5.224888 CGGCCGATTTGTAGCTTAATAGTA 58.775 41.667 24.07 0.00 0.00 1.82
5443 9827 4.056050 CGGCCGATTTGTAGCTTAATAGT 58.944 43.478 24.07 0.00 0.00 2.12
5444 9828 3.432252 CCGGCCGATTTGTAGCTTAATAG 59.568 47.826 30.73 0.00 0.00 1.73
5445 9829 3.069872 TCCGGCCGATTTGTAGCTTAATA 59.930 43.478 30.73 0.00 0.00 0.98
5446 9830 2.158871 TCCGGCCGATTTGTAGCTTAAT 60.159 45.455 30.73 0.00 0.00 1.40
5447 9831 1.207570 TCCGGCCGATTTGTAGCTTAA 59.792 47.619 30.73 0.00 0.00 1.85
5448 9832 0.825410 TCCGGCCGATTTGTAGCTTA 59.175 50.000 30.73 0.00 0.00 3.09
5449 9833 0.743345 GTCCGGCCGATTTGTAGCTT 60.743 55.000 30.73 0.00 0.00 3.74
5450 9834 1.153429 GTCCGGCCGATTTGTAGCT 60.153 57.895 30.73 0.00 0.00 3.32
5451 9835 0.814010 ATGTCCGGCCGATTTGTAGC 60.814 55.000 30.73 7.46 0.00 3.58
5452 9836 0.937304 CATGTCCGGCCGATTTGTAG 59.063 55.000 30.73 8.04 0.00 2.74
5453 9837 0.250793 ACATGTCCGGCCGATTTGTA 59.749 50.000 30.73 6.84 0.00 2.41
5454 9838 1.002624 ACATGTCCGGCCGATTTGT 60.003 52.632 30.73 20.71 0.00 2.83
5455 9839 1.024046 TGACATGTCCGGCCGATTTG 61.024 55.000 30.73 20.03 0.00 2.32
5456 9840 0.107214 ATGACATGTCCGGCCGATTT 60.107 50.000 30.73 4.94 0.00 2.17
5457 9841 0.532862 GATGACATGTCCGGCCGATT 60.533 55.000 30.73 4.80 0.00 3.34
5458 9842 1.069765 GATGACATGTCCGGCCGAT 59.930 57.895 30.73 9.88 0.00 4.18
5459 9843 1.893919 TTGATGACATGTCCGGCCGA 61.894 55.000 30.73 7.23 0.00 5.54
5460 9844 0.815213 ATTGATGACATGTCCGGCCG 60.815 55.000 21.04 21.04 0.00 6.13
5461 9845 1.392589 AATTGATGACATGTCCGGCC 58.607 50.000 22.85 9.65 0.00 6.13
5462 9846 2.942376 TGTAATTGATGACATGTCCGGC 59.058 45.455 22.85 12.25 0.00 6.13
5463 9847 4.815846 TGATGTAATTGATGACATGTCCGG 59.184 41.667 22.85 0.00 36.42 5.14
5464 9848 5.754890 TCTGATGTAATTGATGACATGTCCG 59.245 40.000 22.85 0.90 36.42 4.79
5465 9849 7.558161 TTCTGATGTAATTGATGACATGTCC 57.442 36.000 22.85 9.16 36.42 4.02
5466 9850 9.282247 GTTTTCTGATGTAATTGATGACATGTC 57.718 33.333 19.27 19.27 36.42 3.06
5467 9851 8.795513 TGTTTTCTGATGTAATTGATGACATGT 58.204 29.630 0.00 0.00 36.42 3.21
5468 9852 9.285770 CTGTTTTCTGATGTAATTGATGACATG 57.714 33.333 0.00 0.00 36.42 3.21
5469 9853 9.017509 ACTGTTTTCTGATGTAATTGATGACAT 57.982 29.630 0.00 0.00 38.99 3.06
5470 9854 8.291740 CACTGTTTTCTGATGTAATTGATGACA 58.708 33.333 0.00 0.00 0.00 3.58
5471 9855 8.506437 TCACTGTTTTCTGATGTAATTGATGAC 58.494 33.333 0.00 0.00 0.00 3.06
5472 9856 8.620116 TCACTGTTTTCTGATGTAATTGATGA 57.380 30.769 0.00 0.00 0.00 2.92
5473 9857 8.724229 TCTCACTGTTTTCTGATGTAATTGATG 58.276 33.333 0.00 0.00 0.00 3.07
5474 9858 8.853077 TCTCACTGTTTTCTGATGTAATTGAT 57.147 30.769 0.00 0.00 0.00 2.57
5475 9859 7.933577 ACTCTCACTGTTTTCTGATGTAATTGA 59.066 33.333 0.00 0.00 0.00 2.57
5476 9860 8.092521 ACTCTCACTGTTTTCTGATGTAATTG 57.907 34.615 0.00 0.00 0.00 2.32
5477 9861 7.389053 GGACTCTCACTGTTTTCTGATGTAATT 59.611 37.037 0.00 0.00 0.00 1.40
5478 9862 6.876257 GGACTCTCACTGTTTTCTGATGTAAT 59.124 38.462 0.00 0.00 0.00 1.89
5479 9863 6.183360 TGGACTCTCACTGTTTTCTGATGTAA 60.183 38.462 0.00 0.00 0.00 2.41
5480 9864 5.304357 TGGACTCTCACTGTTTTCTGATGTA 59.696 40.000 0.00 0.00 0.00 2.29
5481 9865 4.101585 TGGACTCTCACTGTTTTCTGATGT 59.898 41.667 0.00 0.00 0.00 3.06
5482 9866 4.635223 TGGACTCTCACTGTTTTCTGATG 58.365 43.478 0.00 0.00 0.00 3.07
5483 9867 4.963318 TGGACTCTCACTGTTTTCTGAT 57.037 40.909 0.00 0.00 0.00 2.90
5484 9868 4.753516 TTGGACTCTCACTGTTTTCTGA 57.246 40.909 0.00 0.00 0.00 3.27
5485 9869 5.278169 CCAATTGGACTCTCACTGTTTTCTG 60.278 44.000 20.50 0.00 37.39 3.02
5486 9870 4.823989 CCAATTGGACTCTCACTGTTTTCT 59.176 41.667 20.50 0.00 37.39 2.52
5487 9871 4.580580 ACCAATTGGACTCTCACTGTTTTC 59.419 41.667 31.22 0.00 38.94 2.29
5488 9872 4.536765 ACCAATTGGACTCTCACTGTTTT 58.463 39.130 31.22 0.00 38.94 2.43
5489 9873 4.137543 GACCAATTGGACTCTCACTGTTT 58.862 43.478 31.22 3.06 38.94 2.83
5490 9874 3.392616 AGACCAATTGGACTCTCACTGTT 59.607 43.478 31.22 3.28 35.32 3.16
5491 9875 2.975489 AGACCAATTGGACTCTCACTGT 59.025 45.455 31.22 3.86 35.32 3.55
5492 9876 3.692257 AGACCAATTGGACTCTCACTG 57.308 47.619 31.22 0.28 35.32 3.66
5493 9877 4.713792 AAAGACCAATTGGACTCTCACT 57.286 40.909 31.22 11.58 39.21 3.41
5494 9878 5.066593 AGAAAAGACCAATTGGACTCTCAC 58.933 41.667 31.22 19.16 39.21 3.51
5495 9879 5.310409 AGAAAAGACCAATTGGACTCTCA 57.690 39.130 31.22 0.00 39.21 3.27
5496 9880 6.641169 AAAGAAAAGACCAATTGGACTCTC 57.359 37.500 31.22 25.02 39.21 3.20
5497 9881 7.423844 AAAAAGAAAAGACCAATTGGACTCT 57.576 32.000 31.22 20.34 39.21 3.24
5539 9923 8.871686 AAAACTGATGAAAATACGCTCTTTTT 57.128 26.923 0.00 0.00 0.00 1.94
5540 9924 8.871686 AAAAACTGATGAAAATACGCTCTTTT 57.128 26.923 0.00 0.00 0.00 2.27
5580 9964 8.416329 CCTAGGGATTTCAAGAAACCATATTTG 58.584 37.037 0.00 0.00 32.51 2.32
5581 9965 8.343787 TCCTAGGGATTTCAAGAAACCATATTT 58.656 33.333 9.46 0.00 32.51 1.40
5582 9966 7.882755 TCCTAGGGATTTCAAGAAACCATATT 58.117 34.615 9.46 0.00 32.51 1.28
5583 9967 7.465900 TCCTAGGGATTTCAAGAAACCATAT 57.534 36.000 9.46 4.91 32.51 1.78
5584 9968 6.901615 TCCTAGGGATTTCAAGAAACCATA 57.098 37.500 9.46 10.16 32.51 2.74
5585 9969 5.796502 TCCTAGGGATTTCAAGAAACCAT 57.203 39.130 9.46 9.73 32.51 3.55
5586 9970 5.796502 ATCCTAGGGATTTCAAGAAACCA 57.203 39.130 9.46 0.00 39.79 3.67
5587 9971 6.542735 GTGTATCCTAGGGATTTCAAGAAACC 59.457 42.308 9.46 2.26 39.79 3.27
5588 9972 7.110155 TGTGTATCCTAGGGATTTCAAGAAAC 58.890 38.462 9.46 0.00 39.79 2.78
5589 9973 7.265599 TGTGTATCCTAGGGATTTCAAGAAA 57.734 36.000 9.46 0.00 39.79 2.52
5590 9974 6.884472 TGTGTATCCTAGGGATTTCAAGAA 57.116 37.500 9.46 0.00 39.79 2.52
5591 9975 6.443849 AGTTGTGTATCCTAGGGATTTCAAGA 59.556 38.462 9.46 0.00 39.79 3.02
5592 9976 6.653989 AGTTGTGTATCCTAGGGATTTCAAG 58.346 40.000 9.46 0.00 39.79 3.02
5593 9977 6.636454 AGTTGTGTATCCTAGGGATTTCAA 57.364 37.500 9.46 7.16 39.79 2.69
5594 9978 6.214615 TGAAGTTGTGTATCCTAGGGATTTCA 59.785 38.462 9.46 4.41 39.79 2.69
5595 9979 6.650120 TGAAGTTGTGTATCCTAGGGATTTC 58.350 40.000 9.46 2.09 39.79 2.17
5596 9980 6.636454 TGAAGTTGTGTATCCTAGGGATTT 57.364 37.500 9.46 0.00 39.79 2.17
5597 9981 6.158695 ACATGAAGTTGTGTATCCTAGGGATT 59.841 38.462 9.46 0.00 39.79 3.01
5598 9982 5.667626 ACATGAAGTTGTGTATCCTAGGGAT 59.332 40.000 9.46 3.99 45.40 3.85
5599 9983 5.030147 ACATGAAGTTGTGTATCCTAGGGA 58.970 41.667 9.46 0.00 35.55 4.20
5600 9984 5.359194 ACATGAAGTTGTGTATCCTAGGG 57.641 43.478 9.46 0.00 0.00 3.53
5601 9985 5.104941 TGGACATGAAGTTGTGTATCCTAGG 60.105 44.000 0.82 0.82 0.00 3.02
5602 9986 5.977635 TGGACATGAAGTTGTGTATCCTAG 58.022 41.667 0.00 0.00 0.00 3.02
5603 9987 6.367374 TTGGACATGAAGTTGTGTATCCTA 57.633 37.500 0.00 0.00 0.00 2.94
5604 9988 4.908601 TGGACATGAAGTTGTGTATCCT 57.091 40.909 0.00 0.00 0.00 3.24
5605 9989 6.071952 ACAATTGGACATGAAGTTGTGTATCC 60.072 38.462 10.83 0.00 0.00 2.59
5606 9990 6.913170 ACAATTGGACATGAAGTTGTGTATC 58.087 36.000 10.83 0.00 0.00 2.24
5607 9991 6.899393 ACAATTGGACATGAAGTTGTGTAT 57.101 33.333 10.83 0.00 0.00 2.29
5608 9992 6.707440 AACAATTGGACATGAAGTTGTGTA 57.293 33.333 10.83 0.00 30.96 2.90
5609 9993 5.596836 AACAATTGGACATGAAGTTGTGT 57.403 34.783 10.83 0.00 30.96 3.72
5610 9994 6.041511 TCAAACAATTGGACATGAAGTTGTG 58.958 36.000 10.83 0.00 37.15 3.33
5611 9995 6.219417 TCAAACAATTGGACATGAAGTTGT 57.781 33.333 10.83 1.46 37.15 3.32
5612 9996 6.924612 TCATCAAACAATTGGACATGAAGTTG 59.075 34.615 10.83 0.82 37.15 3.16
5613 9997 6.925165 GTCATCAAACAATTGGACATGAAGTT 59.075 34.615 10.83 0.00 37.15 2.66
5614 9998 6.266103 AGTCATCAAACAATTGGACATGAAGT 59.734 34.615 10.83 1.11 37.15 3.01
5615 9999 6.684686 AGTCATCAAACAATTGGACATGAAG 58.315 36.000 10.83 5.81 37.15 3.02
5616 10000 6.653526 AGTCATCAAACAATTGGACATGAA 57.346 33.333 10.83 0.00 37.15 2.57
5617 10001 6.653526 AAGTCATCAAACAATTGGACATGA 57.346 33.333 10.83 8.64 37.15 3.07
5618 10002 6.924612 TGAAAGTCATCAAACAATTGGACATG 59.075 34.615 10.83 6.51 37.15 3.21
5619 10003 7.053316 TGAAAGTCATCAAACAATTGGACAT 57.947 32.000 10.83 0.00 37.15 3.06
5620 10004 6.462552 TGAAAGTCATCAAACAATTGGACA 57.537 33.333 10.83 0.00 37.15 4.02
5621 10005 7.652909 TGAATGAAAGTCATCAAACAATTGGAC 59.347 33.333 10.83 6.30 35.16 4.02
5622 10006 7.724287 TGAATGAAAGTCATCAAACAATTGGA 58.276 30.769 10.83 0.00 35.16 3.53
5623 10007 7.949903 TGAATGAAAGTCATCAAACAATTGG 57.050 32.000 10.83 0.00 35.16 3.16
5636 10020 7.809331 TGTTTTGATGCAGTATGAATGAAAGTC 59.191 33.333 0.00 0.00 38.48 3.01
5637 10021 7.660112 TGTTTTGATGCAGTATGAATGAAAGT 58.340 30.769 0.00 0.00 38.48 2.66
5638 10022 8.697846 ATGTTTTGATGCAGTATGAATGAAAG 57.302 30.769 0.00 0.00 38.48 2.62
5640 10024 9.738832 CATATGTTTTGATGCAGTATGAATGAA 57.261 29.630 0.00 0.00 31.27 2.57
5641 10025 9.122779 TCATATGTTTTGATGCAGTATGAATGA 57.877 29.630 1.90 0.00 31.27 2.57
5642 10026 9.394477 CTCATATGTTTTGATGCAGTATGAATG 57.606 33.333 1.90 0.00 31.27 2.67
5643 10027 8.080417 GCTCATATGTTTTGATGCAGTATGAAT 58.920 33.333 1.90 0.00 36.73 2.57
5644 10028 7.283807 AGCTCATATGTTTTGATGCAGTATGAA 59.716 33.333 1.90 0.00 39.69 2.57
5645 10029 6.769341 AGCTCATATGTTTTGATGCAGTATGA 59.231 34.615 1.90 0.00 39.69 2.15
5646 10030 6.967135 AGCTCATATGTTTTGATGCAGTATG 58.033 36.000 1.90 0.00 40.87 2.39
5647 10031 7.578310 AAGCTCATATGTTTTGATGCAGTAT 57.422 32.000 1.90 0.00 0.00 2.12
5648 10032 7.395190 AAAGCTCATATGTTTTGATGCAGTA 57.605 32.000 1.90 0.00 0.00 2.74
5649 10033 5.909621 AAGCTCATATGTTTTGATGCAGT 57.090 34.783 1.90 0.00 0.00 4.40
5742 10126 9.179909 GTCACACTGCTACACTATATAGGATAT 57.820 37.037 14.25 0.00 0.00 1.63
5743 10127 7.610692 GGTCACACTGCTACACTATATAGGATA 59.389 40.741 14.25 5.14 0.00 2.59
5744 10128 6.434652 GGTCACACTGCTACACTATATAGGAT 59.565 42.308 14.25 4.24 0.00 3.24
5745 10129 5.768662 GGTCACACTGCTACACTATATAGGA 59.231 44.000 14.25 0.00 0.00 2.94
5746 10130 5.770663 AGGTCACACTGCTACACTATATAGG 59.229 44.000 14.25 5.81 0.00 2.57
5747 10131 6.885952 AGGTCACACTGCTACACTATATAG 57.114 41.667 8.27 8.27 0.00 1.31
5748 10132 8.161425 TCATAGGTCACACTGCTACACTATATA 58.839 37.037 0.00 0.00 0.00 0.86
5749 10133 7.004691 TCATAGGTCACACTGCTACACTATAT 58.995 38.462 0.00 0.00 0.00 0.86
5750 10134 6.362248 TCATAGGTCACACTGCTACACTATA 58.638 40.000 0.00 0.00 0.00 1.31
5751 10135 5.201243 TCATAGGTCACACTGCTACACTAT 58.799 41.667 0.00 0.00 0.00 2.12
5752 10136 4.595986 TCATAGGTCACACTGCTACACTA 58.404 43.478 0.00 0.00 0.00 2.74
5753 10137 3.431415 TCATAGGTCACACTGCTACACT 58.569 45.455 0.00 0.00 0.00 3.55
5754 10138 3.868757 TCATAGGTCACACTGCTACAC 57.131 47.619 0.00 0.00 0.00 2.90
5755 10139 4.584743 CCTATCATAGGTCACACTGCTACA 59.415 45.833 1.97 0.00 41.18 2.74
5756 10140 5.127693 CCTATCATAGGTCACACTGCTAC 57.872 47.826 1.97 0.00 41.18 3.58
5769 10153 6.650120 ACAGTTTTGGGTGTACCTATCATAG 58.350 40.000 0.44 0.00 41.11 2.23
5770 10154 6.352394 GGACAGTTTTGGGTGTACCTATCATA 60.352 42.308 0.44 0.00 41.11 2.15
5771 10155 5.497474 GACAGTTTTGGGTGTACCTATCAT 58.503 41.667 0.44 0.00 41.11 2.45
5772 10156 4.263156 GGACAGTTTTGGGTGTACCTATCA 60.263 45.833 0.44 0.00 41.11 2.15
5773 10157 4.259356 GGACAGTTTTGGGTGTACCTATC 58.741 47.826 0.44 0.00 41.11 2.08
5774 10158 3.009805 GGGACAGTTTTGGGTGTACCTAT 59.990 47.826 0.44 0.00 43.56 2.57
5775 10159 2.372837 GGGACAGTTTTGGGTGTACCTA 59.627 50.000 0.44 0.00 43.56 3.08
5776 10160 1.144298 GGGACAGTTTTGGGTGTACCT 59.856 52.381 0.44 0.00 43.56 3.08
5777 10161 1.612676 GGGACAGTTTTGGGTGTACC 58.387 55.000 0.00 0.00 40.55 3.34
5778 10162 1.133730 TGGGGACAGTTTTGGGTGTAC 60.134 52.381 0.00 0.00 35.01 2.90
5779 10163 1.223501 TGGGGACAGTTTTGGGTGTA 58.776 50.000 0.00 0.00 35.01 2.90
5780 10164 2.011734 TGGGGACAGTTTTGGGTGT 58.988 52.632 0.00 0.00 35.01 4.16
5791 10175 4.593206 GTCATGTAGGATATTCTGGGGACA 59.407 45.833 0.00 0.00 39.59 4.02
5792 10176 4.841246 AGTCATGTAGGATATTCTGGGGAC 59.159 45.833 0.00 0.00 0.00 4.46
5793 10177 5.093236 AGTCATGTAGGATATTCTGGGGA 57.907 43.478 0.00 0.00 0.00 4.81
5794 10178 5.555017 CAAGTCATGTAGGATATTCTGGGG 58.445 45.833 0.00 0.00 0.00 4.96
5795 10179 4.999950 GCAAGTCATGTAGGATATTCTGGG 59.000 45.833 0.00 0.00 0.00 4.45
5796 10180 5.614308 TGCAAGTCATGTAGGATATTCTGG 58.386 41.667 0.00 0.00 0.00 3.86
5797 10181 7.130303 CATGCAAGTCATGTAGGATATTCTG 57.870 40.000 0.00 0.00 45.79 3.02
5810 10194 4.481368 AAATCAATGGCATGCAAGTCAT 57.519 36.364 21.36 10.69 34.81 3.06
5811 10195 3.965379 AAATCAATGGCATGCAAGTCA 57.035 38.095 21.36 8.54 0.00 3.41
5812 10196 4.746729 TGTAAATCAATGGCATGCAAGTC 58.253 39.130 21.36 1.89 0.00 3.01
5813 10197 4.751060 CTGTAAATCAATGGCATGCAAGT 58.249 39.130 21.36 4.01 0.00 3.16
5814 10198 3.554324 GCTGTAAATCAATGGCATGCAAG 59.446 43.478 21.36 5.80 0.00 4.01
5815 10199 3.056035 TGCTGTAAATCAATGGCATGCAA 60.056 39.130 21.36 9.21 0.00 4.08
5816 10200 2.496470 TGCTGTAAATCAATGGCATGCA 59.504 40.909 21.36 6.13 0.00 3.96
5817 10201 3.167921 TGCTGTAAATCAATGGCATGC 57.832 42.857 9.90 9.90 0.00 4.06
5818 10202 3.978855 CGATGCTGTAAATCAATGGCATG 59.021 43.478 0.00 0.00 36.21 4.06
5819 10203 3.005050 CCGATGCTGTAAATCAATGGCAT 59.995 43.478 0.00 0.00 37.89 4.40
5820 10204 2.358582 CCGATGCTGTAAATCAATGGCA 59.641 45.455 0.00 0.00 31.24 4.92
5821 10205 2.618241 TCCGATGCTGTAAATCAATGGC 59.382 45.455 0.00 0.00 0.00 4.40
5822 10206 3.303329 CGTCCGATGCTGTAAATCAATGG 60.303 47.826 0.00 0.00 0.00 3.16
5823 10207 3.303329 CCGTCCGATGCTGTAAATCAATG 60.303 47.826 0.00 0.00 0.00 2.82
5824 10208 2.872245 CCGTCCGATGCTGTAAATCAAT 59.128 45.455 0.00 0.00 0.00 2.57
5825 10209 2.276201 CCGTCCGATGCTGTAAATCAA 58.724 47.619 0.00 0.00 0.00 2.57
5826 10210 1.206132 ACCGTCCGATGCTGTAAATCA 59.794 47.619 0.00 0.00 0.00 2.57
5827 10211 1.593006 CACCGTCCGATGCTGTAAATC 59.407 52.381 0.00 0.00 0.00 2.17
5828 10212 1.066430 ACACCGTCCGATGCTGTAAAT 60.066 47.619 0.00 0.00 0.00 1.40
5829 10213 0.319083 ACACCGTCCGATGCTGTAAA 59.681 50.000 0.00 0.00 0.00 2.01
5830 10214 0.319083 AACACCGTCCGATGCTGTAA 59.681 50.000 0.00 0.00 0.00 2.41
5831 10215 1.175654 TAACACCGTCCGATGCTGTA 58.824 50.000 0.00 0.00 0.00 2.74
5832 10216 0.319083 TTAACACCGTCCGATGCTGT 59.681 50.000 0.00 0.00 0.00 4.40
5833 10217 1.434555 TTTAACACCGTCCGATGCTG 58.565 50.000 0.00 0.00 0.00 4.41
5834 10218 2.006888 CATTTAACACCGTCCGATGCT 58.993 47.619 0.00 0.00 0.00 3.79
5835 10219 1.063469 CCATTTAACACCGTCCGATGC 59.937 52.381 0.00 0.00 0.00 3.91
5836 10220 1.668751 CCCATTTAACACCGTCCGATG 59.331 52.381 0.00 0.00 0.00 3.84
5837 10221 2.015081 GCCCATTTAACACCGTCCGAT 61.015 52.381 0.00 0.00 0.00 4.18
5838 10222 0.674269 GCCCATTTAACACCGTCCGA 60.674 55.000 0.00 0.00 0.00 4.55
5839 10223 1.798087 GCCCATTTAACACCGTCCG 59.202 57.895 0.00 0.00 0.00 4.79
5840 10224 0.674269 TCGCCCATTTAACACCGTCC 60.674 55.000 0.00 0.00 0.00 4.79
5841 10225 1.158434 TTCGCCCATTTAACACCGTC 58.842 50.000 0.00 0.00 0.00 4.79
5842 10226 1.267533 GTTTCGCCCATTTAACACCGT 59.732 47.619 0.00 0.00 0.00 4.83
5843 10227 1.401800 GGTTTCGCCCATTTAACACCG 60.402 52.381 0.00 0.00 0.00 4.94
5844 10228 2.357327 GGTTTCGCCCATTTAACACC 57.643 50.000 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.