Multiple sequence alignment - TraesCS2A01G308700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G308700 chr2A 100.000 4361 0 0 1577 5937 530756837 530752477 0.000000e+00 8054.0
1 TraesCS2A01G308700 chr2A 100.000 1284 0 0 1 1284 530758413 530757130 0.000000e+00 2372.0
2 TraesCS2A01G308700 chr2A 97.436 507 12 1 5432 5937 532041430 532041936 0.000000e+00 863.0
3 TraesCS2A01G308700 chr2A 97.239 507 13 1 5431 5937 29834107 29834612 0.000000e+00 857.0
4 TraesCS2A01G308700 chr2A 96.970 264 8 0 4574 4837 584517143 584517406 1.520000e-120 444.0
5 TraesCS2A01G308700 chr2D 94.163 1285 62 10 4 1284 392702279 392701004 0.000000e+00 1945.0
6 TraesCS2A01G308700 chr2D 95.652 943 36 3 3640 4577 392696337 392695395 0.000000e+00 1509.0
7 TraesCS2A01G308700 chr2D 91.761 971 48 5 1577 2522 392700920 392699957 0.000000e+00 1321.0
8 TraesCS2A01G308700 chr2D 93.412 592 15 4 2714 3283 392697137 392696548 0.000000e+00 856.0
9 TraesCS2A01G308700 chr2D 92.692 561 36 2 4879 5435 392695365 392694806 0.000000e+00 804.0
10 TraesCS2A01G308700 chr2D 98.969 194 1 1 2520 2713 392697389 392697197 4.400000e-91 346.0
11 TraesCS2A01G308700 chr2D 94.898 196 9 1 3282 3477 392696518 392696324 7.480000e-79 305.0
12 TraesCS2A01G308700 chr2D 85.938 64 8 1 676 738 180898794 180898731 3.840000e-07 67.6
13 TraesCS2A01G308700 chr2B 93.130 1150 70 7 138 1284 464685284 464684141 0.000000e+00 1677.0
14 TraesCS2A01G308700 chr2B 92.748 979 44 15 1749 2713 464683946 464682981 0.000000e+00 1389.0
15 TraesCS2A01G308700 chr2B 90.741 756 56 8 3827 4578 464682017 464681272 0.000000e+00 996.0
16 TraesCS2A01G308700 chr2B 87.956 822 33 16 2714 3477 464682921 464682108 0.000000e+00 909.0
17 TraesCS2A01G308700 chr2B 90.637 502 38 5 4941 5435 464681202 464680703 0.000000e+00 658.0
18 TraesCS2A01G308700 chr2B 97.358 265 7 0 4573 4837 517503726 517503462 9.070000e-123 451.0
19 TraesCS2A01G308700 chr2B 95.968 124 5 0 1577 1700 464684063 464683940 1.010000e-47 202.0
20 TraesCS2A01G308700 chr2B 92.029 138 9 2 3508 3643 699077671 699077808 6.070000e-45 193.0
21 TraesCS2A01G308700 chr2B 81.865 193 31 2 46 234 794897940 794897748 6.160000e-35 159.0
22 TraesCS2A01G308700 chr2B 93.333 105 6 1 4 108 464685642 464685539 2.870000e-33 154.0
23 TraesCS2A01G308700 chr4A 97.222 504 14 0 5434 5937 521135708 521136211 0.000000e+00 854.0
24 TraesCS2A01G308700 chr4A 96.838 506 15 1 5432 5937 399767834 399768338 0.000000e+00 845.0
25 TraesCS2A01G308700 chr4A 95.938 517 17 4 5422 5937 549169021 549169534 0.000000e+00 835.0
26 TraesCS2A01G308700 chr4A 87.097 93 11 1 3744 3836 590228010 590227919 2.930000e-18 104.0
27 TraesCS2A01G308700 chr4A 80.822 73 8 6 671 740 567053477 567053546 1.100000e-02 52.8
28 TraesCS2A01G308700 chr3A 97.024 504 14 1 5435 5937 188930738 188930235 0.000000e+00 846.0
29 TraesCS2A01G308700 chr3A 97.018 503 13 1 5435 5937 521312123 521312623 0.000000e+00 845.0
30 TraesCS2A01G308700 chr3A 86.463 229 25 5 2937 3162 500410584 500410359 4.600000e-61 246.0
31 TraesCS2A01G308700 chr3A 87.209 86 10 1 3744 3829 538834879 538834963 4.900000e-16 97.1
32 TraesCS2A01G308700 chr3A 96.875 32 1 0 709 740 686848013 686848044 3.000000e-03 54.7
33 TraesCS2A01G308700 chr3A 92.308 39 2 1 712 749 700950368 700950330 3.000000e-03 54.7
34 TraesCS2A01G308700 chr6A 96.832 505 16 0 5433 5937 48629346 48628842 0.000000e+00 845.0
35 TraesCS2A01G308700 chr5A 96.832 505 15 1 5433 5937 78178687 78178184 0.000000e+00 843.0
36 TraesCS2A01G308700 chr5A 84.615 65 9 1 677 740 170096515 170096451 4.970000e-06 63.9
37 TraesCS2A01G308700 chr3B 99.623 265 0 1 4574 4837 48463252 48463516 3.220000e-132 483.0
38 TraesCS2A01G308700 chr3B 96.629 267 9 0 4571 4837 19251082 19251348 1.520000e-120 444.0
39 TraesCS2A01G308700 chr3B 89.873 79 8 0 3750 3828 806726623 806726701 1.050000e-17 102.0
40 TraesCS2A01G308700 chr7B 98.872 266 2 1 4573 4837 594683502 594683767 1.940000e-129 473.0
41 TraesCS2A01G308700 chr7B 96.654 269 8 1 4573 4840 620270573 620270841 4.220000e-121 446.0
42 TraesCS2A01G308700 chr7B 95.985 274 9 2 4575 4848 372681457 372681186 1.520000e-120 444.0
43 TraesCS2A01G308700 chr5B 97.004 267 8 0 4574 4840 153487347 153487081 3.260000e-122 449.0
44 TraesCS2A01G308700 chr5B 84.058 69 9 2 674 740 254949832 254949764 1.380000e-06 65.8
45 TraesCS2A01G308700 chr7A 95.620 274 10 2 4572 4845 496902859 496903130 7.060000e-119 438.0
46 TraesCS2A01G308700 chr7A 88.312 231 22 5 2934 3162 687750587 687750814 7.580000e-69 272.0
47 TraesCS2A01G308700 chr7A 86.266 233 25 5 2934 3162 92633801 92634030 4.600000e-61 246.0
48 TraesCS2A01G308700 chr6D 93.913 115 5 2 3537 3650 417750486 417750373 7.910000e-39 172.0
49 TraesCS2A01G308700 chr1D 74.317 366 69 18 68 423 294234517 294234867 1.340000e-26 132.0
50 TraesCS2A01G308700 chr1D 100.000 30 0 0 712 741 451056115 451056086 8.310000e-04 56.5
51 TraesCS2A01G308700 chr1A 82.946 129 15 4 3477 3601 410450135 410450010 6.290000e-20 110.0
52 TraesCS2A01G308700 chr6B 88.235 85 10 0 3744 3828 452529737 452529821 1.050000e-17 102.0
53 TraesCS2A01G308700 chr6B 97.143 35 0 1 712 746 477862648 477862681 2.310000e-04 58.4
54 TraesCS2A01G308700 chr6B 96.774 31 1 0 708 738 555547359 555547389 1.100000e-02 52.8
55 TraesCS2A01G308700 chr3D 86.667 90 10 2 3747 3834 149612021 149611932 1.360000e-16 99.0
56 TraesCS2A01G308700 chr3D 86.207 87 12 0 3742 3828 414906123 414906209 1.760000e-15 95.3
57 TraesCS2A01G308700 chr3D 100.000 28 0 0 713 740 66337393 66337366 1.100000e-02 52.8
58 TraesCS2A01G308700 chr3D 100.000 28 0 0 713 740 411435599 411435626 1.100000e-02 52.8
59 TraesCS2A01G308700 chr4D 86.517 89 11 1 3740 3828 72677847 72677934 4.900000e-16 97.1
60 TraesCS2A01G308700 chr4B 86.517 89 11 1 3740 3828 105711523 105711610 4.900000e-16 97.1
61 TraesCS2A01G308700 chr4B 100.000 31 0 0 712 742 634454728 634454698 2.310000e-04 58.4
62 TraesCS2A01G308700 chr1B 100.000 29 0 0 712 740 113981618 113981590 3.000000e-03 54.7
63 TraesCS2A01G308700 chr5D 100.000 28 0 0 713 740 557658033 557658006 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G308700 chr2A 530752477 530758413 5936 True 5213.000000 8054 100.000000 1 5937 2 chr2A.!!$R1 5936
1 TraesCS2A01G308700 chr2A 532041430 532041936 506 False 863.000000 863 97.436000 5432 5937 1 chr2A.!!$F2 505
2 TraesCS2A01G308700 chr2A 29834107 29834612 505 False 857.000000 857 97.239000 5431 5937 1 chr2A.!!$F1 506
3 TraesCS2A01G308700 chr2D 392694806 392702279 7473 True 1012.285714 1945 94.506714 4 5435 7 chr2D.!!$R2 5431
4 TraesCS2A01G308700 chr2B 464680703 464685642 4939 True 855.000000 1677 92.073286 4 5435 7 chr2B.!!$R3 5431
5 TraesCS2A01G308700 chr4A 521135708 521136211 503 False 854.000000 854 97.222000 5434 5937 1 chr4A.!!$F2 503
6 TraesCS2A01G308700 chr4A 399767834 399768338 504 False 845.000000 845 96.838000 5432 5937 1 chr4A.!!$F1 505
7 TraesCS2A01G308700 chr4A 549169021 549169534 513 False 835.000000 835 95.938000 5422 5937 1 chr4A.!!$F3 515
8 TraesCS2A01G308700 chr3A 188930235 188930738 503 True 846.000000 846 97.024000 5435 5937 1 chr3A.!!$R1 502
9 TraesCS2A01G308700 chr3A 521312123 521312623 500 False 845.000000 845 97.018000 5435 5937 1 chr3A.!!$F1 502
10 TraesCS2A01G308700 chr6A 48628842 48629346 504 True 845.000000 845 96.832000 5433 5937 1 chr6A.!!$R1 504
11 TraesCS2A01G308700 chr5A 78178184 78178687 503 True 843.000000 843 96.832000 5433 5937 1 chr5A.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 525 0.180406 GGACGATGTGGTTGCCCTAT 59.820 55.0 0.00 0.00 0.0 2.57 F
337 564 0.249868 CGGTGAGAGAAGTTGGCACA 60.250 55.0 0.00 0.00 0.0 4.57 F
1882 2135 0.402504 TTTATCCACCGGTGCCTGTT 59.597 50.0 29.75 12.96 0.0 3.16 F
3573 6535 0.171231 GCCGTGCCATTTTCTCTTCC 59.829 55.0 0.00 0.00 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2174 0.304705 GCCGACGCCATCAACAATAG 59.695 55.0 0.00 0.0 0.00 1.73 R
2253 2515 0.764369 TCTGCAGTTCCTCCACCTGT 60.764 55.0 14.67 0.0 0.00 4.00 R
3584 6546 0.107831 ACGTAAGAGCTGGTTTGGCA 59.892 50.0 0.00 0.0 43.62 4.92 R
5106 8079 0.330604 ACAGATTGCCATCAGCCTGT 59.669 50.0 0.01 0.0 42.71 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.030216 ACACACTGGTTGAAAGGGAATTT 58.970 39.130 0.00 0.00 0.00 1.82
103 104 2.362503 TGGAGTGGCCGAGATCGT 60.363 61.111 0.00 0.00 40.66 3.73
123 124 3.404438 GGTACATGGGCCACCGGA 61.404 66.667 9.28 0.00 40.75 5.14
168 394 3.121030 CCGCCACTGCCTTCTTCG 61.121 66.667 0.00 0.00 0.00 3.79
190 416 2.514824 GCCCTCGGCCTGTGATTC 60.515 66.667 0.00 0.00 44.06 2.52
193 419 1.153289 CCTCGGCCTGTGATTCTGG 60.153 63.158 0.00 0.00 38.06 3.86
263 490 2.019951 GAAGAAGTTGGCGCGACGA 61.020 57.895 12.10 2.57 0.00 4.20
298 525 0.180406 GGACGATGTGGTTGCCCTAT 59.820 55.000 0.00 0.00 0.00 2.57
337 564 0.249868 CGGTGAGAGAAGTTGGCACA 60.250 55.000 0.00 0.00 0.00 4.57
416 643 1.289109 CGAGGCATGAAAACCGACGT 61.289 55.000 0.00 0.00 0.00 4.34
463 690 0.964860 CAATTGGGGGCGTGATGACA 60.965 55.000 0.00 0.00 0.00 3.58
494 721 2.515523 GGTCGGGGAGATCGTCGA 60.516 66.667 0.00 0.00 0.00 4.20
498 725 2.515523 GGGGAGATCGTCGACGGA 60.516 66.667 35.05 22.63 40.29 4.69
544 771 1.589414 AGTAGCAGAAATGCCCCTCT 58.411 50.000 0.00 0.00 34.90 3.69
566 793 1.799181 GCTAACTTGCGCGAGAGATGA 60.799 52.381 31.19 9.65 0.00 2.92
603 830 1.771255 GGGGGAGAAGTGAGCATATGT 59.229 52.381 4.29 0.00 0.00 2.29
715 942 3.472283 TTATAGCGGCCGGACATTTTA 57.528 42.857 29.38 0.00 0.00 1.52
813 1042 3.149005 TGTAGCCCGTCTTTCCAATTT 57.851 42.857 0.00 0.00 0.00 1.82
880 1109 3.243177 CGTAAAGTTTCTATCTCGCCTGC 59.757 47.826 0.00 0.00 0.00 4.85
981 1210 2.645510 CGCGTCGTGTCCACAGTTC 61.646 63.158 0.00 0.00 0.00 3.01
982 1211 2.645510 GCGTCGTGTCCACAGTTCG 61.646 63.158 0.00 0.00 0.00 3.95
983 1212 2.645510 CGTCGTGTCCACAGTTCGC 61.646 63.158 0.00 0.00 0.00 4.70
1140 1369 1.751351 GACATCCTCCGACAGTCATCA 59.249 52.381 0.41 0.00 0.00 3.07
1209 1438 1.007387 GGTTGCACGAGCCCTTTTG 60.007 57.895 1.39 0.00 41.13 2.44
1702 1931 3.521796 GCTCCTGGATTTGCCGCC 61.522 66.667 0.00 0.00 40.66 6.13
1707 1936 4.713735 TGGATTTGCCGCCTGCGA 62.714 61.111 13.94 0.00 45.60 5.10
1713 1942 4.830765 TGCCGCCTGCGATGGTAC 62.831 66.667 13.94 0.00 45.60 3.34
1718 1947 2.903357 CCTGCGATGGTACTGCCT 59.097 61.111 0.00 0.00 38.35 4.75
1736 1965 1.466856 CTGAGCAGGGCATAAGCAAA 58.533 50.000 0.00 0.00 44.61 3.68
1737 1966 2.029623 CTGAGCAGGGCATAAGCAAAT 58.970 47.619 0.00 0.00 44.61 2.32
1738 1967 2.429610 CTGAGCAGGGCATAAGCAAATT 59.570 45.455 0.00 0.00 44.61 1.82
1739 1968 2.833338 TGAGCAGGGCATAAGCAAATTT 59.167 40.909 0.00 0.00 44.61 1.82
1740 1969 3.192466 GAGCAGGGCATAAGCAAATTTG 58.808 45.455 14.03 14.03 44.61 2.32
1741 1970 2.568509 AGCAGGGCATAAGCAAATTTGT 59.431 40.909 19.03 3.40 44.61 2.83
1765 1994 2.300433 TGTATTTGGCCATGCTGCTAG 58.700 47.619 6.09 0.00 0.00 3.42
1882 2135 0.402504 TTTATCCACCGGTGCCTGTT 59.597 50.000 29.75 12.96 0.00 3.16
1921 2174 3.232213 TGCTCAACTCAGTCCGAATAC 57.768 47.619 0.00 0.00 0.00 1.89
1962 2215 5.418840 GGCTTTAGGAACTCATTGATTTGGA 59.581 40.000 0.00 0.00 41.75 3.53
2060 2314 6.628185 ACTTCGATTTCAATTCTACCGTAGT 58.372 36.000 5.46 0.00 0.00 2.73
2079 2333 5.050769 CGTAGTTGTGCAATTGAGCTATAGG 60.051 44.000 10.34 0.00 34.99 2.57
2084 2338 6.588719 TGTGCAATTGAGCTATAGGTTTTT 57.411 33.333 10.34 0.00 34.99 1.94
2106 2360 3.695830 TGACATGACAAGGGGTACTTC 57.304 47.619 0.00 0.00 37.29 3.01
2129 2383 6.765403 TCATGGGTTAGTTATAAGCGCTTAT 58.235 36.000 36.95 36.95 39.74 1.73
2131 2385 8.369424 TCATGGGTTAGTTATAAGCGCTTATAA 58.631 33.333 39.65 39.65 42.46 0.98
2140 2402 7.661847 AGTTATAAGCGCTTATAATTTGAGCCT 59.338 33.333 42.52 33.77 44.75 4.58
2200 2462 2.224597 TGCTGTGCATTCTCCTTTCTCA 60.225 45.455 0.00 0.00 31.71 3.27
2250 2512 1.151777 CTTTGCGTCGTGGTGTGACT 61.152 55.000 0.00 0.00 34.17 3.41
2253 2515 2.279186 CGTCGTGGTGTGACTGCA 60.279 61.111 0.00 0.00 34.17 4.41
2464 2726 8.853077 TGCTTAATTGGATATACTGGAGATTG 57.147 34.615 0.00 0.00 0.00 2.67
2475 2737 3.371965 ACTGGAGATTGTATACCACGGT 58.628 45.455 0.00 0.00 0.00 4.83
2518 2785 4.365723 GTTCGTGTCCAGTTTCTTAGTGA 58.634 43.478 0.00 0.00 0.00 3.41
2673 5510 5.953183 TGCTAGTTTTGCCAGATAAATGTG 58.047 37.500 0.00 0.00 0.00 3.21
2732 5628 6.414732 AGATCGAAATTGTCCTTCATGGTTA 58.585 36.000 0.00 0.00 37.07 2.85
2757 5653 6.895204 AGTTTGTATAATGCCTTTGGGTATGT 59.105 34.615 0.00 0.00 37.97 2.29
2935 5844 1.001406 GGATCTCTTACTGGGGCATCG 59.999 57.143 0.00 0.00 0.00 3.84
2995 5926 2.910688 AGGAGAAAGCAGAACAACGA 57.089 45.000 0.00 0.00 0.00 3.85
3121 6052 5.700373 CAGGAAGAAACTTGAAGAGGAGAAG 59.300 44.000 0.00 0.00 0.00 2.85
3186 6117 3.941483 AGGGATGATGTAAGTTTTGCTCG 59.059 43.478 0.00 0.00 0.00 5.03
3196 6127 7.192148 TGTAAGTTTTGCTCGCTTGTTTATA 57.808 32.000 0.00 0.00 0.00 0.98
3200 6131 7.566858 AGTTTTGCTCGCTTGTTTATAATTG 57.433 32.000 0.00 0.00 0.00 2.32
3204 6135 8.613613 TTTGCTCGCTTGTTTATAATTGTATG 57.386 30.769 0.00 0.00 0.00 2.39
3358 6320 8.773404 AGTGTTGGTCTGTATATTCAAAGTAC 57.227 34.615 0.00 0.00 0.00 2.73
3381 6343 3.498397 GCATGGAAACTTGAAAGAGTCGA 59.502 43.478 0.00 0.00 37.69 4.20
3403 6365 6.520175 CGAATAATCGTGTGTGATGATGATC 58.480 40.000 0.00 0.00 44.06 2.92
3464 6426 0.322456 AGTGTGCTGTGTGGTTGTGT 60.322 50.000 0.00 0.00 0.00 3.72
3473 6435 2.822561 TGTGTGGTTGTGTCATTTGTGT 59.177 40.909 0.00 0.00 0.00 3.72
3474 6436 4.010349 TGTGTGGTTGTGTCATTTGTGTA 58.990 39.130 0.00 0.00 0.00 2.90
3475 6437 4.095632 TGTGTGGTTGTGTCATTTGTGTAG 59.904 41.667 0.00 0.00 0.00 2.74
3476 6438 3.066064 TGTGGTTGTGTCATTTGTGTAGC 59.934 43.478 0.00 0.00 0.00 3.58
3477 6439 3.066064 GTGGTTGTGTCATTTGTGTAGCA 59.934 43.478 0.00 0.00 0.00 3.49
3478 6440 3.696548 TGGTTGTGTCATTTGTGTAGCAA 59.303 39.130 0.00 0.00 34.87 3.91
3479 6441 4.340666 TGGTTGTGTCATTTGTGTAGCAAT 59.659 37.500 0.00 0.00 36.89 3.56
3480 6442 5.532779 TGGTTGTGTCATTTGTGTAGCAATA 59.467 36.000 0.00 0.00 36.89 1.90
3481 6443 6.039829 TGGTTGTGTCATTTGTGTAGCAATAA 59.960 34.615 0.00 0.00 36.89 1.40
3482 6444 7.090173 GGTTGTGTCATTTGTGTAGCAATAAT 58.910 34.615 0.00 0.00 36.89 1.28
3483 6445 7.273381 GGTTGTGTCATTTGTGTAGCAATAATC 59.727 37.037 0.00 0.00 36.89 1.75
3484 6446 6.851609 TGTGTCATTTGTGTAGCAATAATCC 58.148 36.000 0.00 0.00 36.89 3.01
3485 6447 6.658816 TGTGTCATTTGTGTAGCAATAATCCT 59.341 34.615 0.00 0.00 36.89 3.24
3486 6448 7.826744 TGTGTCATTTGTGTAGCAATAATCCTA 59.173 33.333 0.00 0.00 36.89 2.94
3487 6449 8.122952 GTGTCATTTGTGTAGCAATAATCCTAC 58.877 37.037 0.00 0.00 36.89 3.18
3488 6450 7.011016 TGTCATTTGTGTAGCAATAATCCTACG 59.989 37.037 0.00 0.00 37.36 3.51
3489 6451 7.011109 GTCATTTGTGTAGCAATAATCCTACGT 59.989 37.037 0.00 0.00 37.36 3.57
3490 6452 6.897259 TTTGTGTAGCAATAATCCTACGTC 57.103 37.500 0.00 0.00 37.36 4.34
3491 6453 5.847111 TGTGTAGCAATAATCCTACGTCT 57.153 39.130 0.00 0.00 37.36 4.18
3492 6454 6.947644 TGTGTAGCAATAATCCTACGTCTA 57.052 37.500 0.00 0.00 37.36 2.59
3493 6455 6.732154 TGTGTAGCAATAATCCTACGTCTAC 58.268 40.000 0.00 0.00 37.36 2.59
3494 6456 5.850128 GTGTAGCAATAATCCTACGTCTACG 59.150 44.000 0.00 0.04 46.33 3.51
3509 6471 5.484173 CGTCTACGTAACCACCTATGTAA 57.516 43.478 0.00 0.00 34.11 2.41
3510 6472 6.064846 CGTCTACGTAACCACCTATGTAAT 57.935 41.667 0.00 0.00 34.11 1.89
3511 6473 6.138761 CGTCTACGTAACCACCTATGTAATC 58.861 44.000 0.00 0.00 34.11 1.75
3512 6474 6.017605 CGTCTACGTAACCACCTATGTAATCT 60.018 42.308 0.00 0.00 34.11 2.40
3513 6475 7.467811 CGTCTACGTAACCACCTATGTAATCTT 60.468 40.741 0.00 0.00 34.11 2.40
3514 6476 7.859875 GTCTACGTAACCACCTATGTAATCTTC 59.140 40.741 0.00 0.00 0.00 2.87
3515 6477 5.910614 ACGTAACCACCTATGTAATCTTCC 58.089 41.667 0.00 0.00 0.00 3.46
3516 6478 5.659971 ACGTAACCACCTATGTAATCTTCCT 59.340 40.000 0.00 0.00 0.00 3.36
3517 6479 6.835488 ACGTAACCACCTATGTAATCTTCCTA 59.165 38.462 0.00 0.00 0.00 2.94
3518 6480 7.342799 ACGTAACCACCTATGTAATCTTCCTAA 59.657 37.037 0.00 0.00 0.00 2.69
3519 6481 8.365647 CGTAACCACCTATGTAATCTTCCTAAT 58.634 37.037 0.00 0.00 0.00 1.73
3551 6513 4.891727 CCGATCTTCGCGGGGGTG 62.892 72.222 6.13 0.00 44.87 4.61
3552 6514 4.891727 CGATCTTCGCGGGGGTGG 62.892 72.222 6.13 0.00 31.14 4.61
3553 6515 4.547367 GATCTTCGCGGGGGTGGG 62.547 72.222 6.13 0.00 0.00 4.61
3572 6534 3.702478 GCCGTGCCATTTTCTCTTC 57.298 52.632 0.00 0.00 0.00 2.87
3573 6535 0.171231 GCCGTGCCATTTTCTCTTCC 59.829 55.000 0.00 0.00 0.00 3.46
3574 6536 1.533625 CCGTGCCATTTTCTCTTCCA 58.466 50.000 0.00 0.00 0.00 3.53
3575 6537 1.885887 CCGTGCCATTTTCTCTTCCAA 59.114 47.619 0.00 0.00 0.00 3.53
3576 6538 2.493278 CCGTGCCATTTTCTCTTCCAAT 59.507 45.455 0.00 0.00 0.00 3.16
3577 6539 3.428045 CCGTGCCATTTTCTCTTCCAATC 60.428 47.826 0.00 0.00 0.00 2.67
3578 6540 3.191162 CGTGCCATTTTCTCTTCCAATCA 59.809 43.478 0.00 0.00 0.00 2.57
3579 6541 4.673580 CGTGCCATTTTCTCTTCCAATCAG 60.674 45.833 0.00 0.00 0.00 2.90
3580 6542 4.460382 GTGCCATTTTCTCTTCCAATCAGA 59.540 41.667 0.00 0.00 0.00 3.27
3581 6543 4.703575 TGCCATTTTCTCTTCCAATCAGAG 59.296 41.667 0.00 0.00 39.45 3.35
3582 6544 4.439837 GCCATTTTCTCTTCCAATCAGAGC 60.440 45.833 0.00 0.00 38.17 4.09
3583 6545 4.703575 CCATTTTCTCTTCCAATCAGAGCA 59.296 41.667 0.00 0.00 38.17 4.26
3584 6546 5.360144 CCATTTTCTCTTCCAATCAGAGCAT 59.640 40.000 0.00 0.00 38.17 3.79
3585 6547 5.892160 TTTTCTCTTCCAATCAGAGCATG 57.108 39.130 0.00 0.00 38.17 4.06
3586 6548 2.915349 TCTCTTCCAATCAGAGCATGC 58.085 47.619 10.51 10.51 38.17 4.06
3587 6549 1.948145 CTCTTCCAATCAGAGCATGCC 59.052 52.381 15.66 6.03 31.65 4.40
3588 6550 1.282738 TCTTCCAATCAGAGCATGCCA 59.717 47.619 15.66 0.00 0.00 4.92
3589 6551 2.097036 CTTCCAATCAGAGCATGCCAA 58.903 47.619 15.66 0.00 0.00 4.52
3590 6552 2.219080 TCCAATCAGAGCATGCCAAA 57.781 45.000 15.66 0.00 0.00 3.28
3591 6553 1.820519 TCCAATCAGAGCATGCCAAAC 59.179 47.619 15.66 3.83 0.00 2.93
3592 6554 1.134907 CCAATCAGAGCATGCCAAACC 60.135 52.381 15.66 0.00 0.00 3.27
3593 6555 1.546923 CAATCAGAGCATGCCAAACCA 59.453 47.619 15.66 0.00 0.00 3.67
3594 6556 1.471119 ATCAGAGCATGCCAAACCAG 58.529 50.000 15.66 0.00 0.00 4.00
3595 6557 1.214589 CAGAGCATGCCAAACCAGC 59.785 57.895 15.66 0.00 0.00 4.85
3596 6558 1.076192 AGAGCATGCCAAACCAGCT 59.924 52.632 15.66 0.00 38.43 4.24
3597 6559 1.509923 GAGCATGCCAAACCAGCTC 59.490 57.895 15.66 0.00 43.95 4.09
3598 6560 0.964358 GAGCATGCCAAACCAGCTCT 60.964 55.000 15.66 0.00 46.06 4.09
3599 6561 0.541296 AGCATGCCAAACCAGCTCTT 60.541 50.000 15.66 0.00 0.00 2.85
3600 6562 1.176527 GCATGCCAAACCAGCTCTTA 58.823 50.000 6.36 0.00 0.00 2.10
3601 6563 1.135286 GCATGCCAAACCAGCTCTTAC 60.135 52.381 6.36 0.00 0.00 2.34
3602 6564 1.131126 CATGCCAAACCAGCTCTTACG 59.869 52.381 0.00 0.00 0.00 3.18
3603 6565 0.107831 TGCCAAACCAGCTCTTACGT 59.892 50.000 0.00 0.00 0.00 3.57
3604 6566 1.345089 TGCCAAACCAGCTCTTACGTA 59.655 47.619 0.00 0.00 0.00 3.57
3605 6567 2.000447 GCCAAACCAGCTCTTACGTAG 59.000 52.381 0.00 0.00 0.00 3.51
3606 6568 2.000447 CCAAACCAGCTCTTACGTAGC 59.000 52.381 0.35 0.35 40.40 3.58
3624 6586 6.479654 CGTAGCTTTACGTTGAATCTCTAC 57.520 41.667 0.00 1.91 38.52 2.59
3635 6597 5.846994 CGTTGAATCTCTACGTAGATGTAGC 59.153 44.000 24.85 13.84 39.91 3.58
3636 6598 6.511282 CGTTGAATCTCTACGTAGATGTAGCA 60.511 42.308 24.85 15.96 39.91 3.49
3637 6599 6.937436 TGAATCTCTACGTAGATGTAGCAA 57.063 37.500 24.85 6.16 41.29 3.91
3638 6600 7.329588 TGAATCTCTACGTAGATGTAGCAAA 57.670 36.000 24.85 4.78 41.29 3.68
3639 6601 7.418408 TGAATCTCTACGTAGATGTAGCAAAG 58.582 38.462 24.85 10.55 41.29 2.77
3640 6602 5.171147 TCTCTACGTAGATGTAGCAAAGC 57.829 43.478 24.85 0.00 41.29 3.51
3641 6603 4.036498 TCTCTACGTAGATGTAGCAAAGCC 59.964 45.833 24.85 0.00 41.29 4.35
3642 6604 2.311124 ACGTAGATGTAGCAAAGCCC 57.689 50.000 0.00 0.00 0.00 5.19
3643 6605 1.831736 ACGTAGATGTAGCAAAGCCCT 59.168 47.619 0.00 0.00 0.00 5.19
3644 6606 2.236395 ACGTAGATGTAGCAAAGCCCTT 59.764 45.455 0.00 0.00 0.00 3.95
3645 6607 3.270877 CGTAGATGTAGCAAAGCCCTTT 58.729 45.455 0.00 0.00 0.00 3.11
3669 6631 3.840666 TGTAGCCAGAAGAGTTGGAGAAT 59.159 43.478 0.00 0.00 37.96 2.40
3674 6636 4.805609 GCCAGAAGAGTTGGAGAATGAAGT 60.806 45.833 0.00 0.00 37.96 3.01
3716 6678 1.270571 TGAATTCTGCGCTGTACCACA 60.271 47.619 9.73 4.59 0.00 4.17
3793 6757 6.754675 ACGTTTTTGCAAACTATGTTAGCTTT 59.245 30.769 12.39 0.00 40.31 3.51
3816 6780 9.213819 CTTTTAAAAACGTCTTATATTACGGGC 57.786 33.333 1.66 0.00 43.25 6.13
3818 6782 2.712057 ACGTCTTATATTACGGGCCG 57.288 50.000 27.06 27.06 43.25 6.13
3872 6836 4.168101 AGGATTGTCCTCACTTTCTACCA 58.832 43.478 0.00 0.00 45.66 3.25
3878 6842 4.597507 TGTCCTCACTTTCTACCATTTCCT 59.402 41.667 0.00 0.00 0.00 3.36
3941 6905 5.517322 AACATCCTCCGAGTAATCTGTAC 57.483 43.478 0.00 0.00 0.00 2.90
3993 6957 8.968242 GCAATAAAAGCTGGTTTATACATAAGC 58.032 33.333 5.14 0.57 33.50 3.09
4068 7032 4.518970 TGTCTTTTGGCTACCTGATTTGAC 59.481 41.667 0.00 0.00 0.00 3.18
4238 7202 6.578023 AGATATTCAAGGTAGCAAGTCTGAC 58.422 40.000 0.00 0.00 0.00 3.51
4246 7210 3.016474 GCAAGTCTGACGCCGAAGC 62.016 63.158 1.52 0.00 0.00 3.86
4321 7285 1.977854 TCATGGAAGTAGCAGTGTGGT 59.022 47.619 0.00 0.00 0.00 4.16
4329 7293 3.240302 AGTAGCAGTGTGGTAGAACCTT 58.760 45.455 0.00 0.00 39.58 3.50
4391 7355 6.558488 ACTGAGAAAGAGGCAGATATTTCT 57.442 37.500 5.45 5.45 41.98 2.52
4466 7430 3.190953 AGCACTACAAGAGGAGTAACGAC 59.809 47.826 0.00 0.00 0.00 4.34
4581 7549 4.127907 GCTTAAGGCTGTGTAATACTCCC 58.872 47.826 4.29 0.00 38.06 4.30
4582 7550 4.141688 GCTTAAGGCTGTGTAATACTCCCT 60.142 45.833 4.29 0.00 38.06 4.20
4583 7551 5.602628 CTTAAGGCTGTGTAATACTCCCTC 58.397 45.833 0.00 0.00 31.97 4.30
4584 7552 2.399580 AGGCTGTGTAATACTCCCTCC 58.600 52.381 0.00 0.00 0.00 4.30
4585 7553 1.068741 GGCTGTGTAATACTCCCTCCG 59.931 57.143 0.00 0.00 0.00 4.63
4586 7554 1.755380 GCTGTGTAATACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
4587 7555 2.167900 GCTGTGTAATACTCCCTCCGTT 59.832 50.000 0.00 0.00 0.00 4.44
4588 7556 3.737355 GCTGTGTAATACTCCCTCCGTTC 60.737 52.174 0.00 0.00 0.00 3.95
4589 7557 2.762327 TGTGTAATACTCCCTCCGTTCC 59.238 50.000 0.00 0.00 0.00 3.62
4590 7558 3.029570 GTGTAATACTCCCTCCGTTCCT 58.970 50.000 0.00 0.00 0.00 3.36
4591 7559 3.067883 GTGTAATACTCCCTCCGTTCCTC 59.932 52.174 0.00 0.00 0.00 3.71
4592 7560 2.544844 AATACTCCCTCCGTTCCTCA 57.455 50.000 0.00 0.00 0.00 3.86
4593 7561 2.544844 ATACTCCCTCCGTTCCTCAA 57.455 50.000 0.00 0.00 0.00 3.02
4594 7562 2.544844 TACTCCCTCCGTTCCTCAAT 57.455 50.000 0.00 0.00 0.00 2.57
4595 7563 2.544844 ACTCCCTCCGTTCCTCAATA 57.455 50.000 0.00 0.00 0.00 1.90
4596 7564 3.047695 ACTCCCTCCGTTCCTCAATAT 57.952 47.619 0.00 0.00 0.00 1.28
4597 7565 4.194678 ACTCCCTCCGTTCCTCAATATA 57.805 45.455 0.00 0.00 0.00 0.86
4598 7566 4.553678 ACTCCCTCCGTTCCTCAATATAA 58.446 43.478 0.00 0.00 0.00 0.98
4599 7567 4.589374 ACTCCCTCCGTTCCTCAATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
4600 7568 3.901844 TCCCTCCGTTCCTCAATATAAGG 59.098 47.826 0.00 0.00 35.05 2.69
4601 7569 3.646637 CCCTCCGTTCCTCAATATAAGGT 59.353 47.826 4.45 0.00 35.29 3.50
4602 7570 4.503296 CCCTCCGTTCCTCAATATAAGGTG 60.503 50.000 4.45 0.00 35.29 4.00
4603 7571 4.101119 CCTCCGTTCCTCAATATAAGGTGT 59.899 45.833 4.45 0.00 35.29 4.16
4604 7572 5.303589 CCTCCGTTCCTCAATATAAGGTGTA 59.696 44.000 4.45 0.00 35.29 2.90
4605 7573 6.014499 CCTCCGTTCCTCAATATAAGGTGTAT 60.014 42.308 4.45 0.00 35.29 2.29
4606 7574 7.369551 TCCGTTCCTCAATATAAGGTGTATT 57.630 36.000 4.45 0.00 35.29 1.89
4607 7575 8.481492 TCCGTTCCTCAATATAAGGTGTATTA 57.519 34.615 4.45 0.00 35.29 0.98
4608 7576 9.096823 TCCGTTCCTCAATATAAGGTGTATTAT 57.903 33.333 4.45 0.00 35.29 1.28
4609 7577 9.720769 CCGTTCCTCAATATAAGGTGTATTATT 57.279 33.333 4.45 0.00 35.29 1.40
4635 7603 7.986085 TTCCAAAAAGTCAATCTTCTCTAGG 57.014 36.000 0.00 0.00 35.02 3.02
4636 7604 7.079451 TCCAAAAAGTCAATCTTCTCTAGGT 57.921 36.000 0.00 0.00 35.02 3.08
4637 7605 7.518188 TCCAAAAAGTCAATCTTCTCTAGGTT 58.482 34.615 0.00 0.00 35.02 3.50
4638 7606 7.998964 TCCAAAAAGTCAATCTTCTCTAGGTTT 59.001 33.333 0.00 0.00 35.02 3.27
4639 7607 8.078596 CCAAAAAGTCAATCTTCTCTAGGTTTG 58.921 37.037 0.00 0.00 35.02 2.93
4640 7608 8.840321 CAAAAAGTCAATCTTCTCTAGGTTTGA 58.160 33.333 0.00 0.00 35.02 2.69
4641 7609 7.971183 AAAGTCAATCTTCTCTAGGTTTGAC 57.029 36.000 10.37 10.37 42.02 3.18
4642 7610 6.043854 AGTCAATCTTCTCTAGGTTTGACC 57.956 41.667 12.96 0.00 42.32 4.02
4643 7611 5.544176 AGTCAATCTTCTCTAGGTTTGACCA 59.456 40.000 12.96 0.00 42.32 4.02
4644 7612 6.043243 AGTCAATCTTCTCTAGGTTTGACCAA 59.957 38.462 12.96 0.00 42.32 3.67
4645 7613 6.370166 GTCAATCTTCTCTAGGTTTGACCAAG 59.630 42.308 0.00 0.00 41.95 3.61
4646 7614 6.043243 TCAATCTTCTCTAGGTTTGACCAAGT 59.957 38.462 0.00 0.00 41.95 3.16
4647 7615 5.888982 TCTTCTCTAGGTTTGACCAAGTT 57.111 39.130 0.00 0.00 41.95 2.66
4648 7616 6.248569 TCTTCTCTAGGTTTGACCAAGTTT 57.751 37.500 0.00 0.00 41.95 2.66
4649 7617 7.369551 TCTTCTCTAGGTTTGACCAAGTTTA 57.630 36.000 0.00 0.00 41.95 2.01
4650 7618 7.974504 TCTTCTCTAGGTTTGACCAAGTTTAT 58.025 34.615 0.00 0.00 41.95 1.40
4651 7619 9.096823 TCTTCTCTAGGTTTGACCAAGTTTATA 57.903 33.333 0.00 0.00 41.95 0.98
4652 7620 9.372369 CTTCTCTAGGTTTGACCAAGTTTATAG 57.628 37.037 0.00 0.00 41.95 1.31
4653 7621 8.660295 TCTCTAGGTTTGACCAAGTTTATAGA 57.340 34.615 0.00 0.00 41.95 1.98
4654 7622 8.529476 TCTCTAGGTTTGACCAAGTTTATAGAC 58.471 37.037 0.00 0.00 41.95 2.59
4655 7623 8.197592 TCTAGGTTTGACCAAGTTTATAGACA 57.802 34.615 0.00 0.00 41.95 3.41
4656 7624 8.653191 TCTAGGTTTGACCAAGTTTATAGACAA 58.347 33.333 0.00 0.00 41.95 3.18
4657 7625 9.280174 CTAGGTTTGACCAAGTTTATAGACAAA 57.720 33.333 0.00 0.00 41.95 2.83
4658 7626 8.528044 AGGTTTGACCAAGTTTATAGACAAAA 57.472 30.769 0.00 0.00 41.95 2.44
4659 7627 8.973182 AGGTTTGACCAAGTTTATAGACAAAAA 58.027 29.630 0.00 0.00 41.95 1.94
4660 7628 9.758651 GGTTTGACCAAGTTTATAGACAAAAAT 57.241 29.630 0.00 0.00 38.42 1.82
4775 7743 6.902224 ATTTTGCTGTAAAGTTGGTCAAAC 57.098 33.333 0.00 0.00 39.24 2.93
4776 7744 5.392767 TTTGCTGTAAAGTTGGTCAAACA 57.607 34.783 0.00 0.00 41.61 2.83
4777 7745 5.590530 TTGCTGTAAAGTTGGTCAAACAT 57.409 34.783 0.00 0.00 41.61 2.71
4778 7746 6.701145 TTGCTGTAAAGTTGGTCAAACATA 57.299 33.333 0.00 0.00 41.61 2.29
4779 7747 6.312399 TGCTGTAAAGTTGGTCAAACATAG 57.688 37.500 0.00 0.00 41.61 2.23
4780 7748 6.058833 TGCTGTAAAGTTGGTCAAACATAGA 58.941 36.000 0.00 0.00 41.61 1.98
4781 7749 6.017440 TGCTGTAAAGTTGGTCAAACATAGAC 60.017 38.462 0.00 0.00 41.61 2.59
4782 7750 6.017440 GCTGTAAAGTTGGTCAAACATAGACA 60.017 38.462 0.00 0.00 41.61 3.41
4783 7751 7.468084 GCTGTAAAGTTGGTCAAACATAGACAA 60.468 37.037 0.00 0.00 41.61 3.18
4784 7752 7.699566 TGTAAAGTTGGTCAAACATAGACAAC 58.300 34.615 0.00 0.00 41.61 3.32
4785 7753 5.767816 AAGTTGGTCAAACATAGACAACC 57.232 39.130 0.00 0.00 41.61 3.77
4786 7754 3.813166 AGTTGGTCAAACATAGACAACCG 59.187 43.478 0.00 0.00 41.61 4.44
4787 7755 3.478857 TGGTCAAACATAGACAACCGT 57.521 42.857 0.00 0.00 37.74 4.83
4788 7756 3.811083 TGGTCAAACATAGACAACCGTT 58.189 40.909 0.00 0.00 37.74 4.44
4789 7757 3.562141 TGGTCAAACATAGACAACCGTTG 59.438 43.478 9.80 9.80 37.74 4.10
4790 7758 3.810941 GGTCAAACATAGACAACCGTTGA 59.189 43.478 18.19 0.00 37.74 3.18
4791 7759 4.319261 GGTCAAACATAGACAACCGTTGAC 60.319 45.833 18.19 11.71 37.74 3.18
4792 7760 4.510340 GTCAAACATAGACAACCGTTGACT 59.490 41.667 18.19 18.14 39.01 3.41
4793 7761 5.007332 GTCAAACATAGACAACCGTTGACTT 59.993 40.000 19.00 6.97 36.98 3.01
4794 7762 5.587043 TCAAACATAGACAACCGTTGACTTT 59.413 36.000 19.00 10.38 36.98 2.66
4795 7763 6.094325 TCAAACATAGACAACCGTTGACTTTT 59.906 34.615 19.00 11.96 36.98 2.27
4796 7764 6.445357 AACATAGACAACCGTTGACTTTTT 57.555 33.333 19.00 9.05 36.98 1.94
4797 7765 5.816919 ACATAGACAACCGTTGACTTTTTG 58.183 37.500 19.00 15.93 36.98 2.44
4798 7766 3.775661 AGACAACCGTTGACTTTTTGG 57.224 42.857 18.19 0.00 31.83 3.28
4799 7767 3.349022 AGACAACCGTTGACTTTTTGGA 58.651 40.909 18.19 0.00 31.83 3.53
4800 7768 3.759618 AGACAACCGTTGACTTTTTGGAA 59.240 39.130 18.19 0.00 31.83 3.53
4801 7769 4.218852 AGACAACCGTTGACTTTTTGGAAA 59.781 37.500 18.19 0.00 31.83 3.13
4802 7770 4.884247 ACAACCGTTGACTTTTTGGAAAA 58.116 34.783 18.19 0.00 0.00 2.29
4803 7771 5.483811 ACAACCGTTGACTTTTTGGAAAAT 58.516 33.333 18.19 0.00 0.00 1.82
4804 7772 5.935206 ACAACCGTTGACTTTTTGGAAAATT 59.065 32.000 18.19 0.00 0.00 1.82
4805 7773 7.097834 ACAACCGTTGACTTTTTGGAAAATTA 58.902 30.769 18.19 0.00 0.00 1.40
4806 7774 7.603024 ACAACCGTTGACTTTTTGGAAAATTAA 59.397 29.630 18.19 0.00 0.00 1.40
4807 7775 8.608317 CAACCGTTGACTTTTTGGAAAATTAAT 58.392 29.630 5.23 0.00 0.00 1.40
4808 7776 9.819267 AACCGTTGACTTTTTGGAAAATTAATA 57.181 25.926 0.00 0.00 0.00 0.98
4809 7777 9.251792 ACCGTTGACTTTTTGGAAAATTAATAC 57.748 29.630 0.00 0.00 0.00 1.89
4810 7778 9.250624 CCGTTGACTTTTTGGAAAATTAATACA 57.749 29.630 0.00 0.00 0.00 2.29
4813 7781 9.549078 TTGACTTTTTGGAAAATTAATACACCC 57.451 29.630 0.00 0.00 0.00 4.61
4814 7782 8.929487 TGACTTTTTGGAAAATTAATACACCCT 58.071 29.630 0.00 0.00 0.00 4.34
4861 7829 6.426328 ACTTGACATTTGTTTTCAACTTGCAA 59.574 30.769 0.00 0.00 39.73 4.08
4878 7846 5.011329 ACTTGCAACATTTTCAGTGGATGAT 59.989 36.000 0.00 0.00 37.89 2.45
4879 7847 5.471556 TGCAACATTTTCAGTGGATGATT 57.528 34.783 8.42 0.00 37.89 2.57
4880 7848 5.472148 TGCAACATTTTCAGTGGATGATTC 58.528 37.500 8.42 0.00 37.89 2.52
4881 7849 5.010820 TGCAACATTTTCAGTGGATGATTCA 59.989 36.000 8.42 0.00 37.89 2.57
4882 7850 5.575606 GCAACATTTTCAGTGGATGATTCAG 59.424 40.000 8.42 0.00 37.89 3.02
4883 7851 6.684686 CAACATTTTCAGTGGATGATTCAGT 58.315 36.000 8.42 0.00 37.89 3.41
4884 7852 6.263516 ACATTTTCAGTGGATGATTCAGTG 57.736 37.500 1.96 1.96 37.89 3.66
4885 7853 5.184479 ACATTTTCAGTGGATGATTCAGTGG 59.816 40.000 8.63 0.00 37.89 4.00
4886 7854 4.639078 TTTCAGTGGATGATTCAGTGGA 57.361 40.909 8.63 0.00 37.89 4.02
4887 7855 4.849813 TTCAGTGGATGATTCAGTGGAT 57.150 40.909 8.63 0.00 37.89 3.41
4888 7856 4.146745 TCAGTGGATGATTCAGTGGATG 57.853 45.455 8.63 0.00 36.51 3.51
4889 7857 3.776417 TCAGTGGATGATTCAGTGGATGA 59.224 43.478 8.63 0.00 36.51 2.92
4895 7863 3.353370 TGATTCAGTGGATGATGCACA 57.647 42.857 19.16 0.00 41.46 4.57
4910 7878 2.081462 TGCACACATCTCTCTTGCATG 58.919 47.619 0.00 0.00 38.25 4.06
4943 7911 3.431673 TGGTTGCTGTATGATGGTTCA 57.568 42.857 0.00 0.00 36.00 3.18
5045 8017 3.647636 TCAGGAGAGGAGAGGTTAATGG 58.352 50.000 0.00 0.00 0.00 3.16
5080 8053 3.540314 ACTGAATTTTTGTGCTGCCAA 57.460 38.095 0.00 0.00 0.00 4.52
5106 8079 2.912956 AGGAGAAATACCTTGGCACAGA 59.087 45.455 0.00 0.00 42.39 3.41
5195 8168 4.465305 AGCTGGTAGTTATTTACTGGTCGT 59.535 41.667 0.00 0.00 37.73 4.34
5206 8179 6.627395 ATTTACTGGTCGTTGTTGAATCAA 57.373 33.333 0.00 0.00 0.00 2.57
5311 8285 2.167281 CCATGTCCAGATCTCGTCAGTT 59.833 50.000 0.00 0.00 0.00 3.16
5402 8376 9.436957 TTTTTGCAAGGTGTTAGTGAAAATTAA 57.563 25.926 0.00 0.00 0.00 1.40
5596 8571 5.106277 GGTCCTAAAACTATCAAAGGTGTGC 60.106 44.000 0.00 0.00 0.00 4.57
5606 8581 3.626930 TCAAAGGTGTGCCAGTTTAGTT 58.373 40.909 0.00 0.00 37.19 2.24
5692 8667 3.028850 AGCTTGCATGGTTAGCATTGAT 58.971 40.909 9.84 0.00 42.33 2.57
5701 8676 3.088532 GGTTAGCATTGATCCACCAACA 58.911 45.455 0.00 0.00 0.00 3.33
5825 8804 2.962569 CGCTCGTCTTCTCCCACA 59.037 61.111 0.00 0.00 0.00 4.17
5847 8826 0.108472 CAGAATGCTCAGAGGCGACA 60.108 55.000 0.00 0.00 34.52 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.102154 CTTTCAACCAGTGTGTGCCA 58.898 50.000 0.00 0.00 0.00 4.92
39 40 3.713826 ATGCCGGAGAGGTAAGAAAAA 57.286 42.857 5.05 0.00 43.70 1.94
97 98 0.178068 GCCCATGTACCACACGATCT 59.822 55.000 0.00 0.00 0.00 2.75
120 121 3.878667 GCCTCCTCCCCCAATCCG 61.879 72.222 0.00 0.00 0.00 4.18
142 368 3.842923 CAGTGGCGGCTCGAGGAT 61.843 66.667 15.58 0.00 0.00 3.24
152 378 2.357517 ACGAAGAAGGCAGTGGCG 60.358 61.111 11.51 0.00 42.47 5.69
263 490 1.178276 GTCCATGGAGTCGTCTCAGT 58.822 55.000 16.81 0.00 42.05 3.41
321 548 1.581934 CGTTGTGCCAACTTCTCTCA 58.418 50.000 13.76 0.00 0.00 3.27
416 643 0.108520 GAGAACCCACGGTAATCGCA 60.109 55.000 0.00 0.00 43.89 5.10
538 765 4.522971 GCAAGTTAGCGAGAGGGG 57.477 61.111 0.00 0.00 0.00 4.79
590 817 3.389329 CCTCCTACCACATATGCTCACTT 59.611 47.826 1.58 0.00 0.00 3.16
592 819 2.037772 CCCTCCTACCACATATGCTCAC 59.962 54.545 1.58 0.00 0.00 3.51
603 830 3.908103 GGTATATTTCAGCCCTCCTACCA 59.092 47.826 0.00 0.00 0.00 3.25
715 942 0.965439 GCATCTCTAGCAGATCCCGT 59.035 55.000 0.00 0.00 40.20 5.28
1039 1268 1.741032 GTCGAGACGACGAGGAGGT 60.741 63.158 0.00 0.00 46.56 3.85
1140 1369 2.027625 CTCGAGGGCGCGTTTCTTT 61.028 57.895 8.43 0.00 37.46 2.52
1584 1813 1.822613 CGGGAAGACGAGGGATCGA 60.823 63.158 4.44 0.00 36.85 3.59
1702 1931 0.529337 CTCAGGCAGTACCATCGCAG 60.529 60.000 0.00 0.00 43.14 5.18
1718 1947 2.148446 ATTTGCTTATGCCCTGCTCA 57.852 45.000 0.00 0.00 38.71 4.26
1736 1965 6.539464 CAGCATGGCCAAATACAAATACAAAT 59.461 34.615 10.96 0.00 0.00 2.32
1737 1966 5.873712 CAGCATGGCCAAATACAAATACAAA 59.126 36.000 10.96 0.00 0.00 2.83
1738 1967 5.417811 CAGCATGGCCAAATACAAATACAA 58.582 37.500 10.96 0.00 0.00 2.41
1739 1968 4.680172 GCAGCATGGCCAAATACAAATACA 60.680 41.667 10.96 0.00 35.86 2.29
1740 1969 3.803778 GCAGCATGGCCAAATACAAATAC 59.196 43.478 10.96 0.00 35.86 1.89
1741 1970 3.705579 AGCAGCATGGCCAAATACAAATA 59.294 39.130 10.96 0.00 35.86 1.40
1849 2102 6.213677 CGGTGGATAAAATCTCTTCATCGTA 58.786 40.000 0.00 0.00 0.00 3.43
1882 2135 6.486056 TGAGCATAAGGTTAATTGGTTGGTA 58.514 36.000 0.00 0.00 0.00 3.25
1921 2174 0.304705 GCCGACGCCATCAACAATAG 59.695 55.000 0.00 0.00 0.00 1.73
1962 2215 9.227777 GGTACAAGAATACAAAAGATGGTACTT 57.772 33.333 0.00 0.00 0.00 2.24
2060 2314 6.588719 AAAACCTATAGCTCAATTGCACAA 57.411 33.333 0.00 0.00 34.99 3.33
2079 2333 5.722021 ACCCCTTGTCATGTCATAAAAAC 57.278 39.130 0.00 0.00 0.00 2.43
2084 2338 4.780554 TGAAGTACCCCTTGTCATGTCATA 59.219 41.667 0.00 0.00 32.03 2.15
2106 2360 8.542497 TTATAAGCGCTTATAACTAACCCATG 57.458 34.615 39.65 0.00 40.85 3.66
2129 2383 2.511218 AGCAGATCCCAGGCTCAAATTA 59.489 45.455 0.00 0.00 30.74 1.40
2131 2385 0.924823 AGCAGATCCCAGGCTCAAAT 59.075 50.000 0.00 0.00 30.74 2.32
2200 2462 1.134098 CCATCTAATGGCCCGACAACT 60.134 52.381 0.00 0.00 44.70 3.16
2250 2512 1.451504 CAGTTCCTCCACCTGTGCA 59.548 57.895 0.00 0.00 0.00 4.57
2253 2515 0.764369 TCTGCAGTTCCTCCACCTGT 60.764 55.000 14.67 0.00 0.00 4.00
2419 2681 5.448654 AGCATAAATGAACCAGATAAGGCA 58.551 37.500 0.00 0.00 0.00 4.75
2424 2686 9.639563 TCCAATTAAGCATAAATGAACCAGATA 57.360 29.630 0.00 0.00 0.00 1.98
2425 2687 8.537728 TCCAATTAAGCATAAATGAACCAGAT 57.462 30.769 0.00 0.00 0.00 2.90
2453 2715 4.340097 CACCGTGGTATACAATCTCCAGTA 59.660 45.833 5.01 0.00 0.00 2.74
2464 2726 4.142093 ACATTACACCTCACCGTGGTATAC 60.142 45.833 0.00 0.00 38.11 1.47
2475 2737 2.884012 CCAGCAACAACATTACACCTCA 59.116 45.455 0.00 0.00 0.00 3.86
2518 2785 0.107017 CTTGAGTGCCCCGGATCAAT 60.107 55.000 0.73 0.00 31.69 2.57
2693 5530 9.079833 CAATTTCGATCTCTACCTTTTACGTTA 57.920 33.333 0.00 0.00 0.00 3.18
2732 5628 6.895204 ACATACCCAAAGGCATTATACAAACT 59.105 34.615 0.00 0.00 36.11 2.66
2757 5653 6.017770 CACTACACCAACGAAGAACCATAAAA 60.018 38.462 0.00 0.00 0.00 1.52
2821 5717 3.482156 ACATTCTGTGCTTGTCTCTGT 57.518 42.857 0.00 0.00 0.00 3.41
2935 5844 5.467902 TTGACTGCAAAAACAAAAGCATC 57.532 34.783 0.00 0.00 36.28 3.91
2995 5926 4.957296 ACACTATGTCCTGTTCTCGTTTT 58.043 39.130 0.00 0.00 0.00 2.43
3121 6052 4.568760 CGTCTTTCTTCCTCTAGCCATTTC 59.431 45.833 0.00 0.00 0.00 2.17
3358 6320 3.665323 CGACTCTTTCAAGTTTCCATGCG 60.665 47.826 0.00 0.00 0.00 4.73
3381 6343 7.790823 TTGATCATCATCACACACGATTATT 57.209 32.000 0.00 0.00 38.86 1.40
3403 6365 5.615544 CGGCACAATTCAGACTAAGAGTTTG 60.616 44.000 0.00 0.00 32.17 2.93
3459 6421 7.176515 AGGATTATTGCTACACAAATGACACAA 59.823 33.333 0.00 0.00 42.86 3.33
3464 6426 7.045416 ACGTAGGATTATTGCTACACAAATGA 58.955 34.615 14.25 0.00 44.55 2.57
3487 6449 5.484173 TTACATAGGTGGTTACGTAGACG 57.516 43.478 0.00 0.00 46.33 4.18
3488 6450 7.269477 AGATTACATAGGTGGTTACGTAGAC 57.731 40.000 0.00 0.00 31.42 2.59
3489 6451 7.013655 GGAAGATTACATAGGTGGTTACGTAGA 59.986 40.741 0.00 0.00 31.42 2.59
3490 6452 7.014038 AGGAAGATTACATAGGTGGTTACGTAG 59.986 40.741 0.00 0.00 31.42 3.51
3491 6453 6.835488 AGGAAGATTACATAGGTGGTTACGTA 59.165 38.462 0.00 0.00 0.00 3.57
3492 6454 5.659971 AGGAAGATTACATAGGTGGTTACGT 59.340 40.000 0.00 0.00 0.00 3.57
3493 6455 6.158023 AGGAAGATTACATAGGTGGTTACG 57.842 41.667 0.00 0.00 0.00 3.18
3534 6496 4.891727 CACCCCCGCGAAGATCGG 62.892 72.222 8.23 0.00 46.05 4.18
3535 6497 4.891727 CCACCCCCGCGAAGATCG 62.892 72.222 8.23 0.00 43.89 3.69
3536 6498 4.547367 CCCACCCCCGCGAAGATC 62.547 72.222 8.23 0.00 0.00 2.75
3554 6516 0.171231 GGAAGAGAAAATGGCACGGC 59.829 55.000 0.00 0.00 0.00 5.68
3555 6517 1.533625 TGGAAGAGAAAATGGCACGG 58.466 50.000 0.00 0.00 0.00 4.94
3556 6518 3.191162 TGATTGGAAGAGAAAATGGCACG 59.809 43.478 0.00 0.00 0.00 5.34
3557 6519 4.460382 TCTGATTGGAAGAGAAAATGGCAC 59.540 41.667 0.00 0.00 0.00 5.01
3558 6520 4.665451 TCTGATTGGAAGAGAAAATGGCA 58.335 39.130 0.00 0.00 0.00 4.92
3559 6521 4.439837 GCTCTGATTGGAAGAGAAAATGGC 60.440 45.833 4.66 0.00 43.27 4.40
3560 6522 4.703575 TGCTCTGATTGGAAGAGAAAATGG 59.296 41.667 4.66 0.00 43.27 3.16
3561 6523 5.892160 TGCTCTGATTGGAAGAGAAAATG 57.108 39.130 4.66 0.00 43.27 2.32
3562 6524 5.163540 GCATGCTCTGATTGGAAGAGAAAAT 60.164 40.000 11.37 0.00 43.27 1.82
3563 6525 4.157289 GCATGCTCTGATTGGAAGAGAAAA 59.843 41.667 11.37 0.00 43.27 2.29
3564 6526 3.693085 GCATGCTCTGATTGGAAGAGAAA 59.307 43.478 11.37 0.00 43.27 2.52
3565 6527 3.276857 GCATGCTCTGATTGGAAGAGAA 58.723 45.455 11.37 0.00 43.27 2.87
3566 6528 2.421107 GGCATGCTCTGATTGGAAGAGA 60.421 50.000 18.92 0.00 43.27 3.10
3567 6529 1.948145 GGCATGCTCTGATTGGAAGAG 59.052 52.381 18.92 0.00 43.42 2.85
3568 6530 1.282738 TGGCATGCTCTGATTGGAAGA 59.717 47.619 18.92 0.00 0.00 2.87
3569 6531 1.758936 TGGCATGCTCTGATTGGAAG 58.241 50.000 18.92 0.00 0.00 3.46
3570 6532 2.219080 TTGGCATGCTCTGATTGGAA 57.781 45.000 18.92 0.00 0.00 3.53
3571 6533 1.820519 GTTTGGCATGCTCTGATTGGA 59.179 47.619 18.92 0.00 0.00 3.53
3572 6534 1.134907 GGTTTGGCATGCTCTGATTGG 60.135 52.381 18.92 0.00 0.00 3.16
3573 6535 1.546923 TGGTTTGGCATGCTCTGATTG 59.453 47.619 18.92 0.00 0.00 2.67
3574 6536 1.822990 CTGGTTTGGCATGCTCTGATT 59.177 47.619 18.92 0.00 0.00 2.57
3575 6537 1.471119 CTGGTTTGGCATGCTCTGAT 58.529 50.000 18.92 0.00 0.00 2.90
3576 6538 1.246056 GCTGGTTTGGCATGCTCTGA 61.246 55.000 18.92 0.00 0.00 3.27
3577 6539 1.214589 GCTGGTTTGGCATGCTCTG 59.785 57.895 18.92 7.64 0.00 3.35
3578 6540 0.964358 GAGCTGGTTTGGCATGCTCT 60.964 55.000 18.92 2.21 44.52 4.09
3579 6541 1.509923 GAGCTGGTTTGGCATGCTC 59.490 57.895 18.92 8.46 42.31 4.26
3580 6542 0.541296 AAGAGCTGGTTTGGCATGCT 60.541 50.000 18.92 0.00 36.63 3.79
3581 6543 1.135286 GTAAGAGCTGGTTTGGCATGC 60.135 52.381 9.90 9.90 0.00 4.06
3582 6544 1.131126 CGTAAGAGCTGGTTTGGCATG 59.869 52.381 0.00 0.00 43.02 4.06
3583 6545 1.271379 ACGTAAGAGCTGGTTTGGCAT 60.271 47.619 0.00 0.00 43.62 4.40
3584 6546 0.107831 ACGTAAGAGCTGGTTTGGCA 59.892 50.000 0.00 0.00 43.62 4.92
3585 6547 2.000447 CTACGTAAGAGCTGGTTTGGC 59.000 52.381 0.00 0.00 43.62 4.52
3586 6548 2.000447 GCTACGTAAGAGCTGGTTTGG 59.000 52.381 0.00 0.00 43.62 3.28
3587 6549 2.960819 AGCTACGTAAGAGCTGGTTTG 58.039 47.619 10.46 0.00 44.95 2.93
3588 6550 3.679824 AAGCTACGTAAGAGCTGGTTT 57.320 42.857 11.90 0.00 45.58 3.27
3589 6551 3.679824 AAAGCTACGTAAGAGCTGGTT 57.320 42.857 11.90 1.47 45.58 3.67
3590 6552 3.427233 CGTAAAGCTACGTAAGAGCTGGT 60.427 47.826 11.90 6.34 45.58 4.00
3591 6553 3.106672 CGTAAAGCTACGTAAGAGCTGG 58.893 50.000 11.90 0.00 45.58 4.85
3602 6564 6.479654 CGTAGAGATTCAACGTAAAGCTAC 57.520 41.667 1.82 0.00 32.16 3.58
3611 6573 5.846994 GCTACATCTACGTAGAGATTCAACG 59.153 44.000 27.81 12.75 41.21 4.10
3612 6574 6.726230 TGCTACATCTACGTAGAGATTCAAC 58.274 40.000 27.81 15.05 41.21 3.18
3613 6575 6.937436 TGCTACATCTACGTAGAGATTCAA 57.063 37.500 27.81 11.53 41.21 2.69
3614 6576 6.937436 TTGCTACATCTACGTAGAGATTCA 57.063 37.500 27.81 18.36 41.21 2.57
3615 6577 6.361214 GCTTTGCTACATCTACGTAGAGATTC 59.639 42.308 27.81 16.37 41.21 2.52
3616 6578 6.210078 GCTTTGCTACATCTACGTAGAGATT 58.790 40.000 27.81 17.24 41.21 2.40
3617 6579 5.278561 GGCTTTGCTACATCTACGTAGAGAT 60.279 44.000 27.81 20.42 41.21 2.75
3618 6580 4.036498 GGCTTTGCTACATCTACGTAGAGA 59.964 45.833 27.81 15.72 41.21 3.10
3619 6581 4.291783 GGCTTTGCTACATCTACGTAGAG 58.708 47.826 27.81 21.15 41.21 2.43
3620 6582 3.067742 GGGCTTTGCTACATCTACGTAGA 59.932 47.826 26.55 26.55 41.21 2.59
3621 6583 3.068307 AGGGCTTTGCTACATCTACGTAG 59.932 47.826 16.73 16.73 41.56 3.51
3622 6584 3.028850 AGGGCTTTGCTACATCTACGTA 58.971 45.455 0.00 0.00 0.00 3.57
3623 6585 1.831736 AGGGCTTTGCTACATCTACGT 59.168 47.619 0.00 0.00 0.00 3.57
3624 6586 2.604046 AGGGCTTTGCTACATCTACG 57.396 50.000 0.00 0.00 0.00 3.51
3625 6587 4.622701 CAAAGGGCTTTGCTACATCTAC 57.377 45.455 0.00 0.00 42.66 2.59
3636 6598 1.144913 TCTGGCTACACAAAGGGCTTT 59.855 47.619 0.00 0.00 0.00 3.51
3637 6599 0.771127 TCTGGCTACACAAAGGGCTT 59.229 50.000 0.00 0.00 0.00 4.35
3638 6600 0.771127 TTCTGGCTACACAAAGGGCT 59.229 50.000 0.00 0.00 0.00 5.19
3639 6601 1.168714 CTTCTGGCTACACAAAGGGC 58.831 55.000 0.00 0.00 0.00 5.19
3640 6602 2.039084 ACTCTTCTGGCTACACAAAGGG 59.961 50.000 0.00 0.00 0.00 3.95
3641 6603 3.409026 ACTCTTCTGGCTACACAAAGG 57.591 47.619 0.00 0.00 0.00 3.11
3642 6604 3.499918 CCAACTCTTCTGGCTACACAAAG 59.500 47.826 0.00 0.00 0.00 2.77
3643 6605 3.135712 TCCAACTCTTCTGGCTACACAAA 59.864 43.478 0.00 0.00 33.63 2.83
3644 6606 2.703536 TCCAACTCTTCTGGCTACACAA 59.296 45.455 0.00 0.00 33.63 3.33
3645 6607 2.300152 CTCCAACTCTTCTGGCTACACA 59.700 50.000 0.00 0.00 33.63 3.72
3646 6608 2.563179 TCTCCAACTCTTCTGGCTACAC 59.437 50.000 0.00 0.00 33.63 2.90
3647 6609 2.889512 TCTCCAACTCTTCTGGCTACA 58.110 47.619 0.00 0.00 33.63 2.74
3648 6610 3.963428 TTCTCCAACTCTTCTGGCTAC 57.037 47.619 0.00 0.00 33.63 3.58
3669 6631 1.876799 CCATTGTACCAACGCACTTCA 59.123 47.619 0.00 0.00 0.00 3.02
3739 6701 0.653397 TGGGATGGAGGGGGTAGAAT 59.347 55.000 0.00 0.00 0.00 2.40
3793 6757 6.019156 CGGCCCGTAATATAAGACGTTTTTAA 60.019 38.462 0.00 0.00 37.36 1.52
3800 6764 1.541147 TCCGGCCCGTAATATAAGACG 59.459 52.381 0.85 3.44 38.79 4.18
3812 6776 1.979619 AAAATACTCCCTCCGGCCCG 61.980 60.000 0.00 0.00 0.00 6.13
3816 6780 4.825634 GGGAAAATAAAATACTCCCTCCGG 59.174 45.833 0.00 0.00 42.25 5.14
3818 6782 6.027025 AGGGGAAAATAAAATACTCCCTCC 57.973 41.667 5.47 0.00 44.54 4.30
3872 6836 6.592607 GTCACATTTTTGCATGATCAGGAAAT 59.407 34.615 12.39 5.67 0.00 2.17
3878 6842 4.627900 GCATGTCACATTTTTGCATGATCA 59.372 37.500 0.00 0.00 39.21 2.92
3984 6948 8.752005 TTTGCAAGGAAGATAAGCTTATGTAT 57.248 30.769 23.51 10.22 36.83 2.29
4238 7202 3.257561 CGACTGGATGCTTCGGCG 61.258 66.667 0.00 0.00 45.37 6.46
4246 7210 2.796383 CGCTTAGGAGAACGACTGGATG 60.796 54.545 0.00 0.00 0.00 3.51
4321 7285 6.928348 TTGATCCAGTAGTTGAAGGTTCTA 57.072 37.500 0.00 0.00 0.00 2.10
4329 7293 7.719193 TGTTGAATCTTTTGATCCAGTAGTTGA 59.281 33.333 0.00 0.00 38.40 3.18
4466 7430 3.857854 CTAGCAGCGGCAAGTGCG 61.858 66.667 12.44 0.00 44.78 5.34
4564 7532 2.399580 GGAGGGAGTATTACACAGCCT 58.600 52.381 0.00 0.00 0.00 4.58
4578 7546 3.901844 CCTTATATTGAGGAACGGAGGGA 59.098 47.826 0.00 0.00 36.33 4.20
4579 7547 3.646637 ACCTTATATTGAGGAACGGAGGG 59.353 47.826 10.81 0.00 37.72 4.30
4580 7548 4.101119 ACACCTTATATTGAGGAACGGAGG 59.899 45.833 10.81 0.00 37.72 4.30
4581 7549 5.277857 ACACCTTATATTGAGGAACGGAG 57.722 43.478 10.81 0.00 37.72 4.63
4582 7550 6.989155 ATACACCTTATATTGAGGAACGGA 57.011 37.500 10.81 0.00 37.72 4.69
4583 7551 9.720769 AATAATACACCTTATATTGAGGAACGG 57.279 33.333 10.81 0.00 37.72 4.44
4609 7577 8.850156 CCTAGAGAAGATTGACTTTTTGGAAAA 58.150 33.333 0.00 0.00 39.13 2.29
4610 7578 7.998964 ACCTAGAGAAGATTGACTTTTTGGAAA 59.001 33.333 0.00 0.00 39.13 3.13
4611 7579 7.518188 ACCTAGAGAAGATTGACTTTTTGGAA 58.482 34.615 0.00 0.00 39.13 3.53
4612 7580 7.079451 ACCTAGAGAAGATTGACTTTTTGGA 57.921 36.000 0.00 0.00 39.13 3.53
4613 7581 7.751768 AACCTAGAGAAGATTGACTTTTTGG 57.248 36.000 0.00 0.00 39.13 3.28
4614 7582 8.840321 TCAAACCTAGAGAAGATTGACTTTTTG 58.160 33.333 0.00 0.00 39.13 2.44
4615 7583 8.841300 GTCAAACCTAGAGAAGATTGACTTTTT 58.159 33.333 8.70 0.00 42.50 1.94
4616 7584 7.445707 GGTCAAACCTAGAGAAGATTGACTTTT 59.554 37.037 13.97 0.00 43.77 2.27
4617 7585 6.937465 GGTCAAACCTAGAGAAGATTGACTTT 59.063 38.462 13.97 0.00 43.77 2.66
4618 7586 6.043243 TGGTCAAACCTAGAGAAGATTGACTT 59.957 38.462 13.97 0.00 43.77 3.01
4619 7587 5.544176 TGGTCAAACCTAGAGAAGATTGACT 59.456 40.000 13.97 0.00 43.77 3.41
4620 7588 5.794894 TGGTCAAACCTAGAGAAGATTGAC 58.205 41.667 7.68 7.68 43.67 3.18
4621 7589 6.043243 ACTTGGTCAAACCTAGAGAAGATTGA 59.957 38.462 13.35 0.00 42.55 2.57
4622 7590 6.234177 ACTTGGTCAAACCTAGAGAAGATTG 58.766 40.000 13.35 0.00 42.55 2.67
4623 7591 6.441088 ACTTGGTCAAACCTAGAGAAGATT 57.559 37.500 13.35 0.00 42.55 2.40
4624 7592 6.441088 AACTTGGTCAAACCTAGAGAAGAT 57.559 37.500 13.35 0.00 42.55 2.40
4625 7593 5.888982 AACTTGGTCAAACCTAGAGAAGA 57.111 39.130 13.35 0.00 42.55 2.87
4626 7594 9.372369 CTATAAACTTGGTCAAACCTAGAGAAG 57.628 37.037 13.35 3.69 42.55 2.85
4627 7595 9.096823 TCTATAAACTTGGTCAAACCTAGAGAA 57.903 33.333 13.35 0.50 42.55 2.87
4628 7596 8.529476 GTCTATAAACTTGGTCAAACCTAGAGA 58.471 37.037 13.35 3.93 42.55 3.10
4629 7597 8.311836 TGTCTATAAACTTGGTCAAACCTAGAG 58.688 37.037 13.35 4.45 42.55 2.43
4630 7598 8.197592 TGTCTATAAACTTGGTCAAACCTAGA 57.802 34.615 13.35 0.91 42.55 2.43
4631 7599 8.842358 TTGTCTATAAACTTGGTCAAACCTAG 57.158 34.615 6.11 6.11 44.88 3.02
4632 7600 9.629878 TTTTGTCTATAAACTTGGTCAAACCTA 57.370 29.630 0.00 0.00 39.58 3.08
4633 7601 8.528044 TTTTGTCTATAAACTTGGTCAAACCT 57.472 30.769 0.00 0.00 39.58 3.50
4634 7602 9.758651 ATTTTTGTCTATAAACTTGGTCAAACC 57.241 29.630 0.00 0.00 39.22 3.27
4749 7717 9.685828 GTTTGACCAACTTTACAGCAAAATATA 57.314 29.630 0.00 0.00 31.92 0.86
4750 7718 8.200792 TGTTTGACCAACTTTACAGCAAAATAT 58.799 29.630 0.00 0.00 36.21 1.28
4751 7719 7.548097 TGTTTGACCAACTTTACAGCAAAATA 58.452 30.769 0.00 0.00 36.21 1.40
4752 7720 6.402222 TGTTTGACCAACTTTACAGCAAAAT 58.598 32.000 0.00 0.00 36.21 1.82
4753 7721 5.784177 TGTTTGACCAACTTTACAGCAAAA 58.216 33.333 0.00 0.00 36.21 2.44
4754 7722 5.392767 TGTTTGACCAACTTTACAGCAAA 57.607 34.783 0.00 0.00 36.21 3.68
4755 7723 5.590530 ATGTTTGACCAACTTTACAGCAA 57.409 34.783 0.00 0.00 36.21 3.91
4756 7724 6.017440 GTCTATGTTTGACCAACTTTACAGCA 60.017 38.462 0.00 0.00 36.21 4.41
4757 7725 6.017440 TGTCTATGTTTGACCAACTTTACAGC 60.017 38.462 0.00 0.00 36.21 4.40
4758 7726 7.490962 TGTCTATGTTTGACCAACTTTACAG 57.509 36.000 0.00 0.00 36.21 2.74
4759 7727 7.201750 GGTTGTCTATGTTTGACCAACTTTACA 60.202 37.037 0.00 0.00 36.21 2.41
4760 7728 7.136772 GGTTGTCTATGTTTGACCAACTTTAC 58.863 38.462 0.00 0.00 36.21 2.01
4761 7729 6.017770 CGGTTGTCTATGTTTGACCAACTTTA 60.018 38.462 0.00 0.00 36.21 1.85
4762 7730 5.220970 CGGTTGTCTATGTTTGACCAACTTT 60.221 40.000 0.00 0.00 36.21 2.66
4763 7731 4.274950 CGGTTGTCTATGTTTGACCAACTT 59.725 41.667 0.00 0.00 36.21 2.66
4764 7732 3.813166 CGGTTGTCTATGTTTGACCAACT 59.187 43.478 0.00 0.00 36.21 3.16
4765 7733 3.562557 ACGGTTGTCTATGTTTGACCAAC 59.437 43.478 0.00 0.00 33.83 3.77
4766 7734 3.811083 ACGGTTGTCTATGTTTGACCAA 58.189 40.909 0.00 0.00 33.83 3.67
4767 7735 3.478857 ACGGTTGTCTATGTTTGACCA 57.521 42.857 0.00 0.00 33.83 4.02
4768 7736 3.810941 TCAACGGTTGTCTATGTTTGACC 59.189 43.478 19.47 0.00 33.83 4.02
4769 7737 4.510340 AGTCAACGGTTGTCTATGTTTGAC 59.490 41.667 19.47 7.36 35.21 3.18
4770 7738 4.699637 AGTCAACGGTTGTCTATGTTTGA 58.300 39.130 19.47 0.00 0.00 2.69
4771 7739 5.418310 AAGTCAACGGTTGTCTATGTTTG 57.582 39.130 18.42 0.00 0.00 2.93
4772 7740 6.445357 AAAAGTCAACGGTTGTCTATGTTT 57.555 33.333 18.42 13.25 0.00 2.83
4773 7741 6.262601 CAAAAAGTCAACGGTTGTCTATGTT 58.737 36.000 18.42 11.48 0.00 2.71
4774 7742 5.220970 CCAAAAAGTCAACGGTTGTCTATGT 60.221 40.000 18.42 6.96 0.00 2.29
4775 7743 5.008217 TCCAAAAAGTCAACGGTTGTCTATG 59.992 40.000 18.42 16.40 0.00 2.23
4776 7744 5.127491 TCCAAAAAGTCAACGGTTGTCTAT 58.873 37.500 18.42 9.81 0.00 1.98
4777 7745 4.515361 TCCAAAAAGTCAACGGTTGTCTA 58.485 39.130 18.42 2.30 0.00 2.59
4778 7746 3.349022 TCCAAAAAGTCAACGGTTGTCT 58.651 40.909 19.47 16.45 0.00 3.41
4779 7747 3.768468 TCCAAAAAGTCAACGGTTGTC 57.232 42.857 19.47 14.48 0.00 3.18
4780 7748 4.522722 TTTCCAAAAAGTCAACGGTTGT 57.477 36.364 19.47 0.00 0.00 3.32
4781 7749 6.415798 AATTTTCCAAAAAGTCAACGGTTG 57.584 33.333 14.62 14.62 0.00 3.77
4782 7750 8.725405 ATTAATTTTCCAAAAAGTCAACGGTT 57.275 26.923 0.00 0.00 0.00 4.44
4783 7751 9.251792 GTATTAATTTTCCAAAAAGTCAACGGT 57.748 29.630 0.00 0.00 0.00 4.83
4784 7752 9.250624 TGTATTAATTTTCCAAAAAGTCAACGG 57.749 29.630 0.00 0.00 0.00 4.44
4787 7755 9.549078 GGGTGTATTAATTTTCCAAAAAGTCAA 57.451 29.630 0.00 0.00 0.00 3.18
4788 7756 8.929487 AGGGTGTATTAATTTTCCAAAAAGTCA 58.071 29.630 0.00 0.00 0.00 3.41
4813 7781 6.947158 AGTACTCCCTCCGTTCCTAAATATAG 59.053 42.308 0.00 0.00 0.00 1.31
4814 7782 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
4815 7783 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4816 7784 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4817 7785 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4818 7786 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4819 7787 3.094572 CAAGTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
4820 7788 2.309755 TCAAGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
4821 7789 1.076677 TCAAGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
4822 7790 1.204231 GTCAAGTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
4823 7791 1.891150 TGTCAAGTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
4824 7792 2.005370 TGTCAAGTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
4825 7793 2.233305 ATGTCAAGTACTCCCTCCGT 57.767 50.000 0.00 0.00 0.00 4.69
4826 7794 3.262420 CAAATGTCAAGTACTCCCTCCG 58.738 50.000 0.00 0.00 0.00 4.63
4827 7795 4.287766 ACAAATGTCAAGTACTCCCTCC 57.712 45.455 0.00 0.00 0.00 4.30
4828 7796 6.262273 TGAAAACAAATGTCAAGTACTCCCTC 59.738 38.462 0.00 0.00 0.00 4.30
4829 7797 6.126409 TGAAAACAAATGTCAAGTACTCCCT 58.874 36.000 0.00 0.00 0.00 4.20
4830 7798 6.385649 TGAAAACAAATGTCAAGTACTCCC 57.614 37.500 0.00 0.00 0.00 4.30
4861 7829 5.184479 CCACTGAATCATCCACTGAAAATGT 59.816 40.000 0.00 0.00 37.44 2.71
4878 7846 2.565046 TGTGTGCATCATCCACTGAA 57.435 45.000 6.04 0.00 37.44 3.02
4879 7847 2.793288 ATGTGTGCATCATCCACTGA 57.207 45.000 6.04 0.00 38.53 3.41
4889 7857 2.484742 TGCAAGAGAGATGTGTGCAT 57.515 45.000 0.00 0.00 40.14 3.96
4921 7889 4.148079 TGAACCATCATACAGCAACCAAA 58.852 39.130 0.00 0.00 0.00 3.28
4923 7891 3.346315 CTGAACCATCATACAGCAACCA 58.654 45.455 0.00 0.00 34.37 3.67
5106 8079 0.330604 ACAGATTGCCATCAGCCTGT 59.669 50.000 0.01 0.00 42.71 4.00
5168 8141 6.775708 ACCAGTAAATAACTACCAGCTTGAA 58.224 36.000 0.00 0.00 35.76 2.69
5206 8179 9.228949 GAAAGGCATACATCATCTCAATATCTT 57.771 33.333 0.00 0.00 0.00 2.40
5261 8235 7.787623 AGGATCATGAAAACTTGGAAAATCT 57.212 32.000 0.00 0.00 0.00 2.40
5402 8376 8.980481 TCAAAAGAGAAGTTAGAACCTTGATT 57.020 30.769 0.00 0.00 0.00 2.57
5464 8439 2.035576 ACTAAACTGACACACCTCCGAC 59.964 50.000 0.00 0.00 0.00 4.79
5606 8581 9.268268 CCACAACTACTGTTTCAAAGTTATAGA 57.732 33.333 0.00 0.00 35.47 1.98
5657 8632 3.441101 TGCAAGCTTAGGACCTAAGAGA 58.559 45.455 35.68 16.21 44.24 3.10
5692 8667 1.562008 TCCAAGTGACTTGTTGGTGGA 59.438 47.619 22.40 10.64 43.33 4.02
5701 8676 3.565307 TCCAAGCATTTCCAAGTGACTT 58.435 40.909 0.00 0.00 0.00 3.01
5825 8804 0.390866 CGCCTCTGAGCATTCTGTGT 60.391 55.000 0.00 0.00 0.00 3.72
5847 8826 1.198713 CCACTGATGGCCTCTGTACT 58.801 55.000 3.32 0.00 39.82 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.