Multiple sequence alignment - TraesCS2A01G308100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G308100 chr2A 100.000 7221 0 0 1 7221 529790649 529797869 0.000000e+00 13335.0
1 TraesCS2A01G308100 chr2A 93.393 4556 193 34 1820 6327 529692195 529696690 0.000000e+00 6647.0
2 TraesCS2A01G308100 chr2A 90.935 2471 149 36 1816 4227 528906119 528908573 0.000000e+00 3253.0
3 TraesCS2A01G308100 chr2A 92.614 2112 119 16 4226 6322 528908623 528910712 0.000000e+00 3001.0
4 TraesCS2A01G308100 chr2A 92.320 612 19 9 849 1451 529691349 529691941 0.000000e+00 845.0
5 TraesCS2A01G308100 chr2A 83.876 645 44 24 844 1443 528905271 528905900 1.760000e-155 560.0
6 TraesCS2A01G308100 chr2A 76.211 681 108 21 101 741 349719846 349719180 1.960000e-80 311.0
7 TraesCS2A01G308100 chr2A 81.851 281 32 19 566 844 529376415 529376678 1.220000e-52 219.0
8 TraesCS2A01G308100 chr2A 90.066 151 11 2 6359 6507 529696687 529696835 7.390000e-45 193.0
9 TraesCS2A01G308100 chr2A 86.420 162 8 6 1650 1807 529691997 529692148 1.610000e-36 165.0
10 TraesCS2A01G308100 chr2B 93.963 4903 197 50 1650 6507 463855939 463860787 0.000000e+00 7323.0
11 TraesCS2A01G308100 chr2B 93.769 4574 211 37 2013 6547 464021493 464026031 0.000000e+00 6800.0
12 TraesCS2A01G308100 chr2B 91.134 2470 145 36 1816 4227 463766510 463768963 0.000000e+00 3280.0
13 TraesCS2A01G308100 chr2B 91.111 2340 137 30 4226 6547 463769013 463771299 0.000000e+00 3103.0
14 TraesCS2A01G308100 chr2B 90.621 757 39 10 1 750 464019497 464020228 0.000000e+00 976.0
15 TraesCS2A01G308100 chr2B 92.794 680 22 7 784 1450 464020219 464020884 0.000000e+00 959.0
16 TraesCS2A01G308100 chr2B 94.050 605 28 5 849 1451 463855276 463855874 0.000000e+00 911.0
17 TraesCS2A01G308100 chr2B 94.148 581 27 2 6648 7221 464026026 464026606 0.000000e+00 878.0
18 TraesCS2A01G308100 chr2B 84.385 634 52 19 844 1442 463765681 463766302 4.860000e-161 579.0
19 TraesCS2A01G308100 chr2B 86.472 377 27 11 1650 2014 464020942 464021306 6.790000e-105 392.0
20 TraesCS2A01G308100 chr2B 76.809 470 61 42 392 850 463850369 463850801 3.390000e-53 220.0
21 TraesCS2A01G308100 chr2B 88.889 108 6 5 1470 1573 463855997 463856102 2.110000e-25 128.0
22 TraesCS2A01G308100 chr2B 89.888 89 5 1 1549 1633 463766444 463766532 2.130000e-20 111.0
23 TraesCS2A01G308100 chr2D 93.502 4694 216 38 1886 6539 392052528 392057172 0.000000e+00 6896.0
24 TraesCS2A01G308100 chr2D 90.909 2464 150 35 1822 4227 391850719 391853166 0.000000e+00 3241.0
25 TraesCS2A01G308100 chr2D 91.302 2219 128 17 4226 6430 391853216 391855383 0.000000e+00 2968.0
26 TraesCS2A01G308100 chr2D 93.502 631 31 5 849 1475 392051757 392052381 0.000000e+00 929.0
27 TraesCS2A01G308100 chr2D 83.148 629 50 22 844 1441 391849881 391850484 2.310000e-144 523.0
28 TraesCS2A01G308100 chr2D 80.353 453 60 18 300 740 563947526 563947091 4.200000e-82 316.0
29 TraesCS2A01G308100 chr2D 93.750 160 4 3 1650 1808 392052369 392052523 1.210000e-57 235.0
30 TraesCS2A01G308100 chr2D 93.651 126 6 2 6524 6649 87030960 87031083 3.440000e-43 187.0
31 TraesCS2A01G308100 chr2D 93.600 125 6 2 6524 6648 87035717 87035839 1.240000e-42 185.0
32 TraesCS2A01G308100 chr2D 78.292 281 52 7 228 501 100785790 100785512 9.630000e-39 172.0
33 TraesCS2A01G308100 chr2D 94.340 106 3 2 1470 1574 392052427 392052530 7.500000e-35 159.0
34 TraesCS2A01G308100 chr2D 94.118 68 4 0 6654 6721 392057172 392057239 3.560000e-18 104.0
35 TraesCS2A01G308100 chr6A 79.717 636 110 13 8 631 531514968 531515596 6.650000e-120 442.0
36 TraesCS2A01G308100 chr5D 78.076 634 101 26 19 632 534873689 534873074 4.120000e-97 366.0
37 TraesCS2A01G308100 chr7D 73.641 736 129 36 14 721 49805638 49806336 2.620000e-54 224.0
38 TraesCS2A01G308100 chr7D 78.893 289 51 6 283 564 153320715 153320430 3.440000e-43 187.0
39 TraesCS2A01G308100 chr7D 74.807 389 61 26 228 602 4621334 4620969 2.720000e-29 141.0
40 TraesCS2A01G308100 chr4A 95.200 125 5 1 6533 6657 315236465 315236342 5.710000e-46 196.0
41 TraesCS2A01G308100 chr4A 95.041 121 5 1 6532 6652 90353255 90353374 9.560000e-44 189.0
42 TraesCS2A01G308100 chr1A 97.345 113 3 0 6543 6655 535427577 535427465 7.390000e-45 193.0
43 TraesCS2A01G308100 chr1A 95.763 118 4 1 6533 6649 517104082 517104199 9.560000e-44 189.0
44 TraesCS2A01G308100 chr1A 80.000 245 40 9 6931 7170 440812655 440812895 9.630000e-39 172.0
45 TraesCS2A01G308100 chr7A 94.400 125 4 3 6543 6667 166791953 166792074 9.560000e-44 189.0
46 TraesCS2A01G308100 chr7A 94.355 124 6 1 6530 6653 488587533 488587411 9.560000e-44 189.0
47 TraesCS2A01G308100 chr7A 76.547 307 61 8 228 525 4469875 4469571 2.700000e-34 158.0
48 TraesCS2A01G308100 chr7A 80.108 186 18 16 572 744 39068394 39068215 3.540000e-23 121.0
49 TraesCS2A01G308100 chr3D 92.248 129 8 2 6536 6662 339050068 339050196 1.600000e-41 182.0
50 TraesCS2A01G308100 chr3B 77.524 307 58 8 228 525 733608555 733608859 2.680000e-39 174.0
51 TraesCS2A01G308100 chr6D 73.180 522 111 21 4363 4881 128257908 128258403 2.080000e-35 161.0
52 TraesCS2A01G308100 chr6B 80.311 193 34 4 4363 4553 227096126 227096316 7.550000e-30 143.0
53 TraesCS2A01G308100 chr6B 88.889 81 6 3 558 637 17804676 17804598 5.960000e-16 97.1
54 TraesCS2A01G308100 chr7B 78.774 212 34 8 218 423 206331909 206331703 1.630000e-26 132.0
55 TraesCS2A01G308100 chr4D 75.540 278 57 10 232 501 439772909 439772635 7.600000e-25 126.0
56 TraesCS2A01G308100 chr5B 86.420 81 11 0 2348 2428 62958498 62958578 9.980000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G308100 chr2A 529790649 529797869 7220 False 13335.000000 13335 100.000000 1 7221 1 chr2A.!!$F2 7220
1 TraesCS2A01G308100 chr2A 528905271 528910712 5441 False 2271.333333 3253 89.141667 844 6322 3 chr2A.!!$F3 5478
2 TraesCS2A01G308100 chr2A 529691349 529696835 5486 False 1962.500000 6647 90.549750 849 6507 4 chr2A.!!$F4 5658
3 TraesCS2A01G308100 chr2A 349719180 349719846 666 True 311.000000 311 76.211000 101 741 1 chr2A.!!$R1 640
4 TraesCS2A01G308100 chr2B 463855276 463860787 5511 False 4117.000000 7323 94.006500 849 6507 2 chr2B.!!$F4 5658
5 TraesCS2A01G308100 chr2B 464019497 464026606 7109 False 2001.000000 6800 91.560800 1 7221 5 chr2B.!!$F5 7220
6 TraesCS2A01G308100 chr2B 463765681 463771299 5618 False 1768.250000 3280 89.129500 844 6547 4 chr2B.!!$F3 5703
7 TraesCS2A01G308100 chr2D 391849881 391855383 5502 False 2244.000000 3241 88.453000 844 6430 3 chr2D.!!$F3 5586
8 TraesCS2A01G308100 chr2D 392051757 392057239 5482 False 1664.600000 6896 93.842400 849 6721 5 chr2D.!!$F4 5872
9 TraesCS2A01G308100 chr6A 531514968 531515596 628 False 442.000000 442 79.717000 8 631 1 chr6A.!!$F1 623
10 TraesCS2A01G308100 chr5D 534873074 534873689 615 True 366.000000 366 78.076000 19 632 1 chr5D.!!$R1 613
11 TraesCS2A01G308100 chr7D 49805638 49806336 698 False 224.000000 224 73.641000 14 721 1 chr7D.!!$F1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 251 0.039764 TGAGGAGAAGAAGAGGCCGA 59.960 55.000 0.00 0.00 0.00 5.54 F
344 351 0.388649 GAGCGCGAGTTCTTCTGGAA 60.389 55.000 12.10 0.00 38.41 3.53 F
345 352 0.389166 AGCGCGAGTTCTTCTGGAAG 60.389 55.000 12.10 4.13 39.71 3.46 F
346 353 0.388649 GCGCGAGTTCTTCTGGAAGA 60.389 55.000 12.10 8.74 44.94 2.87 F
1931 2211 0.386476 GGGTTTTCCGGTGTTTGGAC 59.614 55.000 0.00 0.00 41.82 4.02 F
1941 2221 1.002792 GGTGTTTGGACTGAAGCGTTC 60.003 52.381 0.00 0.00 0.00 3.95 F
2739 3324 1.134818 CAAGTATACAGAGCGGGTGCA 60.135 52.381 5.50 0.00 46.23 4.57 F
3020 3607 1.203237 ACAGGCCAAGAGGAAGAGAGA 60.203 52.381 5.01 0.00 36.89 3.10 F
3342 3934 1.211457 GCTGATGGGATCTTCCACAGT 59.789 52.381 15.25 0.00 39.97 3.55 F
5018 5690 1.089920 GTTCAGCTGATGCAACCGAT 58.910 50.000 19.04 0.00 42.74 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 1869 0.100325 CAACAGCAGGAAACGCAACA 59.900 50.000 0.00 0.00 33.30 3.33 R
1816 2045 0.541392 TCACGACTACCTACCGCCTA 59.459 55.000 0.00 0.00 0.00 3.93 R
1817 2046 0.747283 CTCACGACTACCTACCGCCT 60.747 60.000 0.00 0.00 0.00 5.52 R
2178 2704 0.937304 CAGCAGTACAAGTGCAACGT 59.063 50.000 9.25 0.00 46.65 3.99 R
3633 4225 0.457443 TGCTGACTCCATGAGTAGCG 59.543 55.000 14.83 0.00 43.53 4.26 R
3899 4491 1.585006 GCTCAAGCTTGCATGCAGT 59.415 52.632 24.65 6.98 38.21 4.40 R
4301 4944 0.467844 TTGCCAGCAATCACACCACT 60.468 50.000 0.00 0.00 0.00 4.00 R
5018 5690 0.908910 TCCAGCCGAGCCTTTTATCA 59.091 50.000 0.00 0.00 0.00 2.15 R
5232 5923 0.320247 GCCGCTATGCTACTGATGCT 60.320 55.000 0.00 0.00 0.00 3.79 R
6638 7467 0.179097 GCAAAGAGCTACTCCCTCGG 60.179 60.000 0.00 0.00 41.15 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.341531 AGTGCGATGGCTATCACTACC 59.658 52.381 10.94 0.00 37.94 3.18
88 89 1.664874 CGTTCAACTCCGTCGACATGA 60.665 52.381 17.16 10.35 0.00 3.07
152 153 2.417719 GAGGCACGTGATGAACTTTCT 58.582 47.619 22.23 1.39 0.00 2.52
182 183 3.723235 CTCGGGTGGATGTGGAGCG 62.723 68.421 0.00 0.00 0.00 5.03
195 196 1.067582 GGAGCGAATCGGGTCGAAT 59.932 57.895 4.35 0.72 43.86 3.34
197 198 1.406447 GAGCGAATCGGGTCGAATAC 58.594 55.000 4.35 0.00 43.86 1.89
239 240 5.421693 TGGAAGAGAATGAGGAGAAGAAGAG 59.578 44.000 0.00 0.00 0.00 2.85
241 242 3.706086 AGAGAATGAGGAGAAGAAGAGGC 59.294 47.826 0.00 0.00 0.00 4.70
244 251 0.039764 TGAGGAGAAGAAGAGGCCGA 59.960 55.000 0.00 0.00 0.00 5.54
252 259 1.187087 AGAAGAGGCCGACGATTCTT 58.813 50.000 2.49 2.49 32.87 2.52
288 295 1.841919 AGTGATGATGTGGAGATGGCA 59.158 47.619 0.00 0.00 0.00 4.92
322 329 2.362397 GAGCATCCGAAGTATGTCCAGA 59.638 50.000 0.00 0.00 0.00 3.86
324 331 2.803492 GCATCCGAAGTATGTCCAGACC 60.803 54.545 0.00 0.00 0.00 3.85
330 337 1.589196 GTATGTCCAGACCGAGCGC 60.589 63.158 0.00 0.00 0.00 5.92
331 338 3.120979 TATGTCCAGACCGAGCGCG 62.121 63.158 0.00 0.00 37.24 6.86
333 340 4.838486 GTCCAGACCGAGCGCGAG 62.838 72.222 12.10 3.91 40.82 5.03
335 342 4.421479 CCAGACCGAGCGCGAGTT 62.421 66.667 12.10 0.00 40.82 3.01
336 343 2.876645 CAGACCGAGCGCGAGTTC 60.877 66.667 12.10 4.66 40.82 3.01
337 344 3.056938 AGACCGAGCGCGAGTTCT 61.057 61.111 12.10 7.09 39.39 3.01
338 345 2.126424 GACCGAGCGCGAGTTCTT 60.126 61.111 12.10 0.00 39.39 2.52
339 346 2.126424 ACCGAGCGCGAGTTCTTC 60.126 61.111 12.10 0.00 39.39 2.87
340 347 2.179517 CCGAGCGCGAGTTCTTCT 59.820 61.111 12.10 0.00 39.39 2.85
341 348 2.155194 CCGAGCGCGAGTTCTTCTG 61.155 63.158 12.10 0.00 39.39 3.02
342 349 2.155194 CGAGCGCGAGTTCTTCTGG 61.155 63.158 12.10 0.00 39.39 3.86
343 350 1.213013 GAGCGCGAGTTCTTCTGGA 59.787 57.895 12.10 0.00 38.41 3.86
344 351 0.388649 GAGCGCGAGTTCTTCTGGAA 60.389 55.000 12.10 0.00 38.41 3.53
345 352 0.389166 AGCGCGAGTTCTTCTGGAAG 60.389 55.000 12.10 4.13 39.71 3.46
346 353 0.388649 GCGCGAGTTCTTCTGGAAGA 60.389 55.000 12.10 8.74 44.94 2.87
360 367 3.649277 GAAGAGCGAGGCCGAGCAA 62.649 63.158 23.77 0.00 38.22 3.91
382 389 1.002544 AGAAGAAGGCGGTGAAGAAGG 59.997 52.381 0.00 0.00 0.00 3.46
429 436 2.297698 TCCCCGTTGAGTCTGACTTA 57.702 50.000 12.27 4.80 0.00 2.24
435 442 2.541556 GTTGAGTCTGACTTATCGGGC 58.458 52.381 12.27 0.00 35.92 6.13
446 453 3.158676 ACTTATCGGGCTAGGATGACTC 58.841 50.000 0.00 0.00 0.00 3.36
456 463 0.856982 AGGATGACTCGGAGGAGGAT 59.143 55.000 10.23 0.00 44.93 3.24
459 466 2.524306 GATGACTCGGAGGAGGATGAT 58.476 52.381 10.23 0.00 44.93 2.45
462 469 2.311463 GACTCGGAGGAGGATGATGAA 58.689 52.381 10.23 0.00 44.93 2.57
463 470 2.896685 GACTCGGAGGAGGATGATGAAT 59.103 50.000 10.23 0.00 44.93 2.57
464 471 2.632028 ACTCGGAGGAGGATGATGAATG 59.368 50.000 10.23 0.00 44.93 2.67
465 472 2.632028 CTCGGAGGAGGATGATGAATGT 59.368 50.000 0.00 0.00 36.61 2.71
468 478 3.737850 GGAGGAGGATGATGAATGTGAC 58.262 50.000 0.00 0.00 0.00 3.67
473 483 2.158900 AGGATGATGAATGTGACGACCC 60.159 50.000 0.00 0.00 0.00 4.46
475 485 2.849294 TGATGAATGTGACGACCCAA 57.151 45.000 0.00 0.00 0.00 4.12
504 514 7.049133 GGACGATATCTAGGAGCAGTTCTATA 58.951 42.308 0.34 0.00 0.00 1.31
554 564 2.753452 TGTAGTTGAAGTAGGCTCGGAG 59.247 50.000 0.00 0.00 0.00 4.63
685 695 5.376625 TCATTTGTTGGAGCACTAGTCTTT 58.623 37.500 0.00 0.00 0.00 2.52
874 892 2.235855 GTGAAAATAACCGAAACGCCG 58.764 47.619 0.00 0.00 0.00 6.46
1062 1113 0.884514 GCAAGCAAGGGAGAAGGAAC 59.115 55.000 0.00 0.00 0.00 3.62
1112 1190 1.881709 TCGATCGACGAGGGAGACG 60.882 63.158 15.15 2.82 46.45 4.18
1113 1191 2.883468 CGATCGACGAGGGAGACGG 61.883 68.421 10.26 0.00 45.77 4.79
1114 1192 1.523258 GATCGACGAGGGAGACGGA 60.523 63.158 3.01 0.00 34.93 4.69
1115 1193 1.500512 GATCGACGAGGGAGACGGAG 61.501 65.000 3.01 0.00 34.93 4.63
1116 1194 2.944409 ATCGACGAGGGAGACGGAGG 62.944 65.000 3.01 0.00 34.93 4.30
1117 1195 2.829458 GACGAGGGAGACGGAGGG 60.829 72.222 0.00 0.00 34.93 4.30
1118 1196 4.444081 ACGAGGGAGACGGAGGGG 62.444 72.222 0.00 0.00 34.93 4.79
1119 1197 4.124943 CGAGGGAGACGGAGGGGA 62.125 72.222 0.00 0.00 0.00 4.81
1120 1198 2.123640 GAGGGAGACGGAGGGGAG 60.124 72.222 0.00 0.00 0.00 4.30
1121 1199 4.467107 AGGGAGACGGAGGGGAGC 62.467 72.222 0.00 0.00 0.00 4.70
1122 1200 4.467107 GGGAGACGGAGGGGAGCT 62.467 72.222 0.00 0.00 0.00 4.09
1476 1626 2.004583 CGATAGTTGCGTTTCCTGGA 57.995 50.000 0.00 0.00 0.00 3.86
1478 1628 2.348666 CGATAGTTGCGTTTCCTGGAAG 59.651 50.000 9.42 0.12 0.00 3.46
1498 1707 8.752766 TGGAAGATTTACAGTAACTTTAGACG 57.247 34.615 0.00 0.00 0.00 4.18
1499 1708 8.362639 TGGAAGATTTACAGTAACTTTAGACGT 58.637 33.333 0.00 0.00 0.00 4.34
1500 1709 8.858186 GGAAGATTTACAGTAACTTTAGACGTC 58.142 37.037 7.70 7.70 0.00 4.34
1501 1710 9.623350 GAAGATTTACAGTAACTTTAGACGTCT 57.377 33.333 23.66 23.66 0.00 4.18
1508 1717 8.383318 ACAGTAACTTTAGACGTCTAAGTACA 57.617 34.615 31.57 22.29 39.36 2.90
1509 1718 8.840321 ACAGTAACTTTAGACGTCTAAGTACAA 58.160 33.333 31.57 22.05 39.36 2.41
1510 1719 9.327529 CAGTAACTTTAGACGTCTAAGTACAAG 57.672 37.037 31.57 28.00 39.36 3.16
1511 1720 9.061435 AGTAACTTTAGACGTCTAAGTACAAGT 57.939 33.333 31.57 28.42 39.36 3.16
1519 1728 8.728337 AGACGTCTAAGTACAAGTATATGTGA 57.272 34.615 18.46 0.00 34.75 3.58
1520 1729 9.170734 AGACGTCTAAGTACAAGTATATGTGAA 57.829 33.333 18.46 0.00 34.75 3.18
1521 1730 9.778993 GACGTCTAAGTACAAGTATATGTGAAA 57.221 33.333 8.70 0.00 34.75 2.69
1525 1734 9.542462 TCTAAGTACAAGTATATGTGAAATGCC 57.458 33.333 0.00 0.00 34.75 4.40
1526 1735 6.844696 AGTACAAGTATATGTGAAATGCCG 57.155 37.500 0.00 0.00 34.75 5.69
1527 1736 6.346096 AGTACAAGTATATGTGAAATGCCGT 58.654 36.000 0.00 0.00 34.75 5.68
1528 1737 7.494211 AGTACAAGTATATGTGAAATGCCGTA 58.506 34.615 0.00 0.00 34.75 4.02
1529 1738 7.982919 AGTACAAGTATATGTGAAATGCCGTAA 59.017 33.333 0.00 0.00 34.75 3.18
1530 1739 7.801716 ACAAGTATATGTGAAATGCCGTAAT 57.198 32.000 0.00 0.00 30.82 1.89
1531 1740 8.220755 ACAAGTATATGTGAAATGCCGTAATT 57.779 30.769 0.00 0.00 30.82 1.40
1532 1741 8.128582 ACAAGTATATGTGAAATGCCGTAATTG 58.871 33.333 0.00 0.00 30.82 2.32
1533 1742 7.801716 AGTATATGTGAAATGCCGTAATTGT 57.198 32.000 0.00 0.00 0.00 2.71
1534 1743 7.639039 AGTATATGTGAAATGCCGTAATTGTG 58.361 34.615 0.00 0.00 0.00 3.33
1535 1744 6.691754 ATATGTGAAATGCCGTAATTGTGA 57.308 33.333 0.00 0.00 0.00 3.58
1536 1745 4.837896 TGTGAAATGCCGTAATTGTGAA 57.162 36.364 0.00 0.00 0.00 3.18
1537 1746 5.188327 TGTGAAATGCCGTAATTGTGAAA 57.812 34.783 0.00 0.00 0.00 2.69
1538 1747 5.218885 TGTGAAATGCCGTAATTGTGAAAG 58.781 37.500 0.00 0.00 0.00 2.62
1539 1748 5.219633 GTGAAATGCCGTAATTGTGAAAGT 58.780 37.500 0.00 0.00 0.00 2.66
1540 1749 5.689961 GTGAAATGCCGTAATTGTGAAAGTT 59.310 36.000 0.00 0.00 0.00 2.66
1541 1750 5.689514 TGAAATGCCGTAATTGTGAAAGTTG 59.310 36.000 0.00 0.00 0.00 3.16
1542 1751 3.006659 TGCCGTAATTGTGAAAGTTGC 57.993 42.857 0.00 0.00 0.00 4.17
1543 1752 1.976045 GCCGTAATTGTGAAAGTTGCG 59.024 47.619 0.00 0.00 0.00 4.85
1544 1753 2.603652 GCCGTAATTGTGAAAGTTGCGT 60.604 45.455 0.00 0.00 30.67 5.24
1545 1754 2.970609 CCGTAATTGTGAAAGTTGCGTG 59.029 45.455 0.00 0.00 30.67 5.34
1546 1755 3.547214 CCGTAATTGTGAAAGTTGCGTGT 60.547 43.478 0.00 0.00 30.67 4.49
1547 1756 4.318903 CCGTAATTGTGAAAGTTGCGTGTA 60.319 41.667 0.00 0.00 30.67 2.90
1606 1827 5.305902 GGGGAAAGTAACATTCTTTGGGAAA 59.694 40.000 0.00 0.00 37.49 3.13
1607 1828 6.220930 GGGAAAGTAACATTCTTTGGGAAAC 58.779 40.000 0.00 0.00 37.49 2.78
1608 1829 6.041637 GGGAAAGTAACATTCTTTGGGAAACT 59.958 38.462 0.00 0.00 37.49 2.66
1614 1835 8.638873 AGTAACATTCTTTGGGAAACTTTTAGG 58.361 33.333 0.00 0.00 37.49 2.69
1615 1836 5.853936 ACATTCTTTGGGAAACTTTTAGGC 58.146 37.500 0.00 0.00 37.49 3.93
1616 1837 4.577834 TTCTTTGGGAAACTTTTAGGCG 57.422 40.909 0.00 0.00 0.00 5.52
1617 1838 2.888414 TCTTTGGGAAACTTTTAGGCGG 59.112 45.455 0.00 0.00 0.00 6.13
1618 1839 2.368311 TTGGGAAACTTTTAGGCGGT 57.632 45.000 0.00 0.00 0.00 5.68
1619 1840 3.505480 TTGGGAAACTTTTAGGCGGTA 57.495 42.857 0.00 0.00 0.00 4.02
1620 1841 3.062122 TGGGAAACTTTTAGGCGGTAG 57.938 47.619 0.00 0.00 0.00 3.18
1621 1842 2.290450 TGGGAAACTTTTAGGCGGTAGG 60.290 50.000 0.00 0.00 0.00 3.18
1622 1843 2.290514 GGGAAACTTTTAGGCGGTAGGT 60.291 50.000 0.00 0.00 0.00 3.08
1623 1844 3.055167 GGGAAACTTTTAGGCGGTAGGTA 60.055 47.826 0.00 0.00 0.00 3.08
1624 1845 4.186926 GGAAACTTTTAGGCGGTAGGTAG 58.813 47.826 0.00 0.00 0.00 3.18
1625 1846 4.323028 GGAAACTTTTAGGCGGTAGGTAGT 60.323 45.833 0.00 0.00 0.00 2.73
1626 1847 4.462508 AACTTTTAGGCGGTAGGTAGTC 57.537 45.455 0.00 0.00 0.00 2.59
1627 1848 2.424956 ACTTTTAGGCGGTAGGTAGTCG 59.575 50.000 0.00 0.00 0.00 4.18
1628 1849 2.128771 TTTAGGCGGTAGGTAGTCGT 57.871 50.000 0.00 0.00 0.00 4.34
1629 1850 1.382522 TTAGGCGGTAGGTAGTCGTG 58.617 55.000 0.00 0.00 0.00 4.35
1630 1851 0.541392 TAGGCGGTAGGTAGTCGTGA 59.459 55.000 0.00 0.00 0.00 4.35
1631 1852 0.747283 AGGCGGTAGGTAGTCGTGAG 60.747 60.000 0.00 0.00 0.00 3.51
1632 1853 1.063811 GCGGTAGGTAGTCGTGAGC 59.936 63.158 0.00 0.00 0.00 4.26
1633 1854 1.726265 CGGTAGGTAGTCGTGAGCC 59.274 63.158 0.00 0.00 0.00 4.70
1634 1855 0.747283 CGGTAGGTAGTCGTGAGCCT 60.747 60.000 0.00 0.00 35.28 4.58
1635 1856 0.739561 GGTAGGTAGTCGTGAGCCTG 59.260 60.000 0.00 0.00 32.90 4.85
1636 1857 1.461559 GTAGGTAGTCGTGAGCCTGT 58.538 55.000 0.00 0.00 32.90 4.00
1637 1858 1.817447 GTAGGTAGTCGTGAGCCTGTT 59.183 52.381 0.00 0.00 32.90 3.16
1638 1859 2.211250 AGGTAGTCGTGAGCCTGTTA 57.789 50.000 0.00 0.00 0.00 2.41
1639 1860 2.736347 AGGTAGTCGTGAGCCTGTTAT 58.264 47.619 0.00 0.00 0.00 1.89
1640 1861 2.688958 AGGTAGTCGTGAGCCTGTTATC 59.311 50.000 0.00 0.00 0.00 1.75
1641 1862 2.223758 GGTAGTCGTGAGCCTGTTATCC 60.224 54.545 0.00 0.00 0.00 2.59
1642 1863 1.853963 AGTCGTGAGCCTGTTATCCT 58.146 50.000 0.00 0.00 0.00 3.24
1643 1864 1.751924 AGTCGTGAGCCTGTTATCCTC 59.248 52.381 0.00 0.00 0.00 3.71
1644 1865 0.738975 TCGTGAGCCTGTTATCCTCG 59.261 55.000 0.00 0.00 0.00 4.63
1645 1866 0.456221 CGTGAGCCTGTTATCCTCGT 59.544 55.000 0.00 0.00 0.00 4.18
1646 1867 1.534175 CGTGAGCCTGTTATCCTCGTC 60.534 57.143 0.00 0.00 0.00 4.20
1647 1868 1.751924 GTGAGCCTGTTATCCTCGTCT 59.248 52.381 0.00 0.00 0.00 4.18
1648 1869 2.166664 GTGAGCCTGTTATCCTCGTCTT 59.833 50.000 0.00 0.00 0.00 3.01
1734 1957 7.979444 TCCTGGAAGATTTACAGTAACTTTG 57.021 36.000 0.00 0.00 34.07 2.77
1808 2037 5.714806 GGGTATGTGAAAGAATTCCTTTGGA 59.285 40.000 0.65 0.00 44.63 3.53
1809 2038 6.210584 GGGTATGTGAAAGAATTCCTTTGGAA 59.789 38.462 0.65 1.24 44.63 3.53
1810 2039 7.256154 GGGTATGTGAAAGAATTCCTTTGGAAA 60.256 37.037 0.65 0.00 45.41 3.13
1812 2041 9.541143 GTATGTGAAAGAATTCCTTTGGAAAAA 57.459 29.630 0.65 0.00 45.41 1.94
1851 2124 1.423395 GTGAGCTGAAGTTGGTCTCG 58.577 55.000 0.00 0.00 33.59 4.04
1896 2170 1.492720 TGGATTTTGCCGCGTTTTTC 58.507 45.000 4.92 0.00 0.00 2.29
1931 2211 0.386476 GGGTTTTCCGGTGTTTGGAC 59.614 55.000 0.00 0.00 41.82 4.02
1941 2221 1.002792 GGTGTTTGGACTGAAGCGTTC 60.003 52.381 0.00 0.00 0.00 3.95
1947 2227 1.545706 GGACTGAAGCGTTCTCCCCT 61.546 60.000 0.00 0.00 0.00 4.79
2019 2488 9.263446 ACAGGGACAATTAGAGTATTAGTAACA 57.737 33.333 0.00 0.00 0.00 2.41
2049 2545 7.603963 TTGCCTGTTAAAAGGAAAGTTTTTC 57.396 32.000 16.50 0.00 40.02 2.29
2103 2607 3.119495 GGTTGTAACTGCTAAGCCATTGG 60.119 47.826 0.00 0.00 0.00 3.16
2116 2639 5.823861 AAGCCATTGGTTTCAGGTTTATT 57.176 34.783 4.26 0.00 0.00 1.40
2125 2648 7.648039 TGGTTTCAGGTTTATTGTAGTTTGT 57.352 32.000 0.00 0.00 0.00 2.83
2174 2700 4.825085 CCACTTGGTTTGGCTTAGAAGTAA 59.175 41.667 0.00 0.00 0.00 2.24
2175 2701 5.278315 CCACTTGGTTTGGCTTAGAAGTAAC 60.278 44.000 0.00 0.00 0.00 2.50
2176 2702 5.298276 CACTTGGTTTGGCTTAGAAGTAACA 59.702 40.000 0.00 0.00 0.00 2.41
2177 2703 6.016276 CACTTGGTTTGGCTTAGAAGTAACAT 60.016 38.462 0.00 0.00 0.00 2.71
2178 2704 7.174253 CACTTGGTTTGGCTTAGAAGTAACATA 59.826 37.037 0.00 0.00 0.00 2.29
2179 2705 7.174426 ACTTGGTTTGGCTTAGAAGTAACATAC 59.826 37.037 0.00 0.00 0.00 2.39
2180 2706 5.640357 TGGTTTGGCTTAGAAGTAACATACG 59.360 40.000 0.00 0.00 0.00 3.06
2221 2747 8.850454 TGAAATTTTAGTTGCAACTTCTGTAC 57.150 30.769 35.20 20.64 40.37 2.90
2234 2761 3.877508 ACTTCTGTACTTCTGTTGGTTGC 59.122 43.478 0.00 0.00 0.00 4.17
2255 2783 3.314693 CTGTAATCCTGGTAGGGGCTAA 58.685 50.000 0.00 0.00 35.59 3.09
2269 2806 6.765036 GGTAGGGGCTAATAGAAACAACTAAC 59.235 42.308 0.00 0.00 0.00 2.34
2284 2822 9.292846 GAAACAACTAACGTTCTTTTGGTTAAT 57.707 29.630 15.71 0.29 27.27 1.40
2307 2846 5.966742 AGAAGGTTTGAAGTGAATTAGCC 57.033 39.130 0.00 0.00 0.00 3.93
2328 2867 6.978338 AGCCATACATGCTTGATCAAATTAG 58.022 36.000 9.88 0.00 34.87 1.73
2439 2978 5.258841 TCAAGAGGAAGATTACGGACAGTA 58.741 41.667 0.00 0.00 0.00 2.74
2634 3174 1.448985 GCAGAGGAAAACCGTATGCA 58.551 50.000 0.00 0.00 44.52 3.96
2686 3271 2.288457 CGCACTGAAGGAGAGAACAGAA 60.288 50.000 0.00 0.00 34.88 3.02
2739 3324 1.134818 CAAGTATACAGAGCGGGTGCA 60.135 52.381 5.50 0.00 46.23 4.57
2788 3373 1.593196 CTGAGAAGAAACGGTTGGCA 58.407 50.000 0.00 0.00 0.00 4.92
2818 3403 1.405391 GCTGAGAAGAGGAAGGCTCAC 60.405 57.143 0.00 0.00 34.07 3.51
2825 3410 3.760035 GGAAGGCTCACGCTCGGA 61.760 66.667 0.00 0.00 36.09 4.55
2847 3432 5.009310 GGATCATGCATATTCAACAAGCAGA 59.991 40.000 0.00 0.00 38.75 4.26
2886 3471 4.834496 CCAGAGAGAAGCAGAGAGGATTAT 59.166 45.833 0.00 0.00 0.00 1.28
2939 3524 5.525012 CAGAGGGTATGTGTTGTCATACATG 59.475 44.000 15.45 0.00 46.78 3.21
3020 3607 1.203237 ACAGGCCAAGAGGAAGAGAGA 60.203 52.381 5.01 0.00 36.89 3.10
3030 3617 8.153550 GCCAAGAGGAAGAGAGATGAATATTTA 58.846 37.037 0.00 0.00 36.89 1.40
3342 3934 1.211457 GCTGATGGGATCTTCCACAGT 59.789 52.381 15.25 0.00 39.97 3.55
3565 4157 6.461788 GGTTGTCTAGATATTCACTGAGGGTC 60.462 46.154 0.00 0.00 0.00 4.46
3633 4225 1.552337 TGGAGATGGTGAGCAAGAGAC 59.448 52.381 0.00 0.00 0.00 3.36
3693 4285 4.893424 TTGAGCTGTTGGTTAAGACAAC 57.107 40.909 13.40 13.40 46.30 3.32
3712 4304 2.362632 CTCGAGGGACCGGGAAGT 60.363 66.667 6.32 0.00 30.09 3.01
3750 4342 4.632538 TTCTTGATGCTGCTGAATCATG 57.367 40.909 14.50 15.89 38.01 3.07
3899 4491 3.199442 TGGAGGGTGATCTTGTTAGGA 57.801 47.619 0.00 0.00 0.00 2.94
4021 4613 2.681344 GGTTTCTGACGACCACAAACTT 59.319 45.455 0.00 0.00 35.07 2.66
4108 4700 4.516698 TCAGATGCAAGGTCAAAGTTCTTC 59.483 41.667 0.00 0.00 0.00 2.87
4301 4944 4.080751 TCAATGAGATGCTTCATGAGGACA 60.081 41.667 9.36 6.71 37.83 4.02
4308 4951 1.271054 GCTTCATGAGGACAGTGGTGT 60.271 52.381 9.36 0.00 40.71 4.16
4372 5015 4.453480 TTTCCAAGACAAAGTGAGGGAT 57.547 40.909 0.00 0.00 0.00 3.85
4416 5059 5.245531 GGATGTGGTTACTGACTCAATGAA 58.754 41.667 0.00 0.00 0.00 2.57
4890 5547 5.751243 AATAAAGGTGTGTTGAGTGTGTC 57.249 39.130 0.00 0.00 0.00 3.67
5018 5690 1.089920 GTTCAGCTGATGCAACCGAT 58.910 50.000 19.04 0.00 42.74 4.18
5043 5715 3.706373 GGCTCGGCTGGAGTGGAA 61.706 66.667 7.08 0.00 45.03 3.53
5111 5783 2.159310 CGTCAGCTTCTCTCCCTGTAAG 60.159 54.545 0.00 0.00 0.00 2.34
5205 5877 3.044809 GCCAGCAGCAAATCATGTG 57.955 52.632 0.00 0.00 42.97 3.21
5216 5907 6.569226 GCAGCAAATCATGTGAGTTTCTAACT 60.569 38.462 0.00 0.00 46.38 2.24
5219 5910 6.955963 GCAAATCATGTGAGTTTCTAACTACG 59.044 38.462 0.00 0.00 43.03 3.51
5220 5911 6.648725 AATCATGTGAGTTTCTAACTACGC 57.351 37.500 0.00 0.00 43.03 4.42
5221 5912 5.128992 TCATGTGAGTTTCTAACTACGCA 57.871 39.130 0.00 0.00 43.03 5.24
5222 5913 5.161358 TCATGTGAGTTTCTAACTACGCAG 58.839 41.667 0.00 0.00 43.03 5.18
5223 5914 4.841443 TGTGAGTTTCTAACTACGCAGA 57.159 40.909 0.00 0.00 43.03 4.26
5224 5915 4.795268 TGTGAGTTTCTAACTACGCAGAG 58.205 43.478 0.00 0.00 43.03 3.35
5225 5916 4.277672 TGTGAGTTTCTAACTACGCAGAGT 59.722 41.667 0.00 0.00 43.03 3.24
5226 5917 4.852650 GTGAGTTTCTAACTACGCAGAGTC 59.147 45.833 0.00 0.00 43.03 3.36
5227 5918 4.760715 TGAGTTTCTAACTACGCAGAGTCT 59.239 41.667 0.00 0.00 43.03 3.24
5228 5919 5.241064 TGAGTTTCTAACTACGCAGAGTCTT 59.759 40.000 0.00 0.00 43.03 3.01
5229 5920 6.429078 TGAGTTTCTAACTACGCAGAGTCTTA 59.571 38.462 0.00 0.00 43.03 2.10
5230 5921 7.040892 TGAGTTTCTAACTACGCAGAGTCTTAA 60.041 37.037 0.00 0.00 43.03 1.85
5231 5922 7.828712 AGTTTCTAACTACGCAGAGTCTTAAT 58.171 34.615 0.00 0.00 40.69 1.40
5232 5923 8.954350 AGTTTCTAACTACGCAGAGTCTTAATA 58.046 33.333 0.00 0.00 40.69 0.98
5233 5924 9.224058 GTTTCTAACTACGCAGAGTCTTAATAG 57.776 37.037 0.00 0.00 0.00 1.73
5234 5925 6.957150 TCTAACTACGCAGAGTCTTAATAGC 58.043 40.000 0.00 0.00 0.00 2.97
5278 5969 7.496346 TCTATTTGTTATCTGGTTCCTGACT 57.504 36.000 0.72 0.00 0.00 3.41
5445 6139 2.229784 GGCTTGTTGCAGCTTATCAGTT 59.770 45.455 1.17 0.00 45.15 3.16
5466 6160 1.410153 GTATGGAGGGCTTGCAATTGG 59.590 52.381 7.72 0.00 0.00 3.16
5634 6330 5.794726 TTGTGTGCTAACTGAACCTACTA 57.205 39.130 0.00 0.00 0.00 1.82
5692 6388 7.495901 TGATGAGTGAGAATTCTAAGATCACC 58.504 38.462 16.81 6.73 40.88 4.02
5698 6394 3.977326 AGAATTCTAAGATCACCCCTCCC 59.023 47.826 6.06 0.00 0.00 4.30
5868 6564 1.003233 GAGGCAGATAATAACCCGGGG 59.997 57.143 27.92 12.73 0.00 5.73
5956 6652 4.039357 CGTGGCGTCGTCCTCAGT 62.039 66.667 0.00 0.00 0.00 3.41
6094 6790 2.308722 GGAGAAGGTCCATGGCCCA 61.309 63.158 15.64 0.00 46.10 5.36
6183 6880 7.566709 CGTTACTACGGTTGTAAATTCTTGTT 58.433 34.615 14.98 0.00 43.94 2.83
6190 6887 4.023536 GGTTGTAAATTCTTGTTCCGCTGA 60.024 41.667 0.00 0.00 0.00 4.26
6207 6904 2.620585 GCTGAATGAGGTGGGAATAAGC 59.379 50.000 0.00 0.00 0.00 3.09
6310 7035 4.559063 CAGGGCCCGGAGATGCTG 62.559 72.222 18.42 1.78 0.00 4.41
6317 7042 1.153107 CCGGAGATGCTGAATGGCA 60.153 57.895 0.00 0.00 46.63 4.92
6318 7043 1.164662 CCGGAGATGCTGAATGGCAG 61.165 60.000 0.00 0.00 45.75 4.85
6325 7050 3.599584 CTGAATGGCAGCTGGGTG 58.400 61.111 17.12 0.00 37.90 4.61
6343 7083 2.634600 GTGACCCGTGTAATGCCAATA 58.365 47.619 0.00 0.00 0.00 1.90
6435 7262 4.130857 TCGTTTGTTTGAGCAGTTGGATA 58.869 39.130 0.00 0.00 0.00 2.59
6445 7272 7.849804 TTGAGCAGTTGGATATTAAACTCTC 57.150 36.000 15.06 15.06 34.41 3.20
6454 7281 9.745880 GTTGGATATTAAACTCTCGAATCACTA 57.254 33.333 0.00 0.00 0.00 2.74
6547 7376 8.635328 GGCTCTAAGGCTTTATATATCTACTCC 58.365 40.741 4.45 0.00 37.85 3.85
6548 7377 8.635328 GCTCTAAGGCTTTATATATCTACTCCC 58.365 40.741 4.45 0.00 0.00 4.30
6549 7378 9.930158 CTCTAAGGCTTTATATATCTACTCCCT 57.070 37.037 4.45 0.00 0.00 4.20
6550 7379 9.924010 TCTAAGGCTTTATATATCTACTCCCTC 57.076 37.037 4.45 0.00 0.00 4.30
6551 7380 9.930158 CTAAGGCTTTATATATCTACTCCCTCT 57.070 37.037 4.45 0.00 0.00 3.69
6552 7381 8.602472 AAGGCTTTATATATCTACTCCCTCTG 57.398 38.462 0.00 0.00 0.00 3.35
6553 7382 7.714500 AGGCTTTATATATCTACTCCCTCTGT 58.286 38.462 0.00 0.00 0.00 3.41
6554 7383 8.180844 AGGCTTTATATATCTACTCCCTCTGTT 58.819 37.037 0.00 0.00 0.00 3.16
6555 7384 8.471609 GGCTTTATATATCTACTCCCTCTGTTC 58.528 40.741 0.00 0.00 0.00 3.18
6556 7385 8.471609 GCTTTATATATCTACTCCCTCTGTTCC 58.528 40.741 0.00 0.00 0.00 3.62
6557 7386 8.577048 TTTATATATCTACTCCCTCTGTTCCG 57.423 38.462 0.00 0.00 0.00 4.30
6558 7387 4.726035 ATATCTACTCCCTCTGTTCCGA 57.274 45.455 0.00 0.00 0.00 4.55
6559 7388 2.893215 TCTACTCCCTCTGTTCCGAA 57.107 50.000 0.00 0.00 0.00 4.30
6560 7389 3.383698 TCTACTCCCTCTGTTCCGAAT 57.616 47.619 0.00 0.00 0.00 3.34
6561 7390 3.709587 TCTACTCCCTCTGTTCCGAATT 58.290 45.455 0.00 0.00 0.00 2.17
6562 7391 4.863548 TCTACTCCCTCTGTTCCGAATTA 58.136 43.478 0.00 0.00 0.00 1.40
6563 7392 3.889520 ACTCCCTCTGTTCCGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
6564 7393 3.442076 ACTCCCTCTGTTCCGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
6565 7394 3.838903 ACTCCCTCTGTTCCGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
6566 7395 4.184629 CTCCCTCTGTTCCGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
6567 7396 3.581332 TCCCTCTGTTCCGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
6568 7397 3.933332 CCCTCTGTTCCGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
6569 7398 3.612860 CCTCTGTTCCGAATTACTTGTCG 59.387 47.826 0.00 0.00 37.01 4.35
6570 7399 2.991190 TCTGTTCCGAATTACTTGTCGC 59.009 45.455 0.00 0.00 35.93 5.19
6571 7400 2.734606 CTGTTCCGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 35.93 5.10
6572 7401 2.734606 TGTTCCGAATTACTTGTCGCAG 59.265 45.455 0.00 0.00 35.93 5.18
6573 7402 2.991190 GTTCCGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 35.93 4.26
6574 7403 3.520290 TCCGAATTACTTGTCGCAGAT 57.480 42.857 0.00 0.00 40.67 2.90
6575 7404 4.642445 TCCGAATTACTTGTCGCAGATA 57.358 40.909 0.00 0.00 40.67 1.98
6576 7405 5.196341 TCCGAATTACTTGTCGCAGATAT 57.804 39.130 0.00 0.00 40.67 1.63
6577 7406 4.982295 TCCGAATTACTTGTCGCAGATATG 59.018 41.667 0.00 0.00 40.67 1.78
6578 7407 4.150627 CCGAATTACTTGTCGCAGATATGG 59.849 45.833 0.00 0.00 40.67 2.74
6579 7408 4.982295 CGAATTACTTGTCGCAGATATGGA 59.018 41.667 0.00 0.00 40.67 3.41
6580 7409 5.635280 CGAATTACTTGTCGCAGATATGGAT 59.365 40.000 0.00 0.00 40.67 3.41
6581 7410 6.400409 CGAATTACTTGTCGCAGATATGGATG 60.400 42.308 0.00 0.00 40.67 3.51
6582 7411 3.827008 ACTTGTCGCAGATATGGATGT 57.173 42.857 0.00 0.00 40.67 3.06
6583 7412 4.937201 ACTTGTCGCAGATATGGATGTA 57.063 40.909 0.00 0.00 40.67 2.29
6584 7413 5.474578 ACTTGTCGCAGATATGGATGTAT 57.525 39.130 0.00 0.00 40.67 2.29
6585 7414 5.473931 ACTTGTCGCAGATATGGATGTATC 58.526 41.667 0.00 0.00 40.67 2.24
6586 7415 5.244851 ACTTGTCGCAGATATGGATGTATCT 59.755 40.000 0.00 0.00 41.03 1.98
6587 7416 6.434340 ACTTGTCGCAGATATGGATGTATCTA 59.566 38.462 0.00 0.00 38.93 1.98
6588 7417 6.442513 TGTCGCAGATATGGATGTATCTAG 57.557 41.667 0.00 0.00 38.93 2.43
6589 7418 6.180472 TGTCGCAGATATGGATGTATCTAGA 58.820 40.000 0.00 0.00 38.93 2.43
6590 7419 6.830838 TGTCGCAGATATGGATGTATCTAGAT 59.169 38.462 10.73 10.73 38.93 1.98
6591 7420 7.138081 GTCGCAGATATGGATGTATCTAGATG 58.862 42.308 15.79 0.00 38.93 2.90
6592 7421 6.830838 TCGCAGATATGGATGTATCTAGATGT 59.169 38.462 15.79 1.25 38.93 3.06
6593 7422 7.993183 TCGCAGATATGGATGTATCTAGATGTA 59.007 37.037 15.79 4.44 38.93 2.29
6594 7423 8.791675 CGCAGATATGGATGTATCTAGATGTAT 58.208 37.037 15.79 9.11 38.93 2.29
6621 7450 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
6622 7451 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
6623 7452 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
6624 7453 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
6625 7454 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
6626 7455 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
6627 7456 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
6628 7457 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
6629 7458 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
6630 7459 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
6631 7460 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
6632 7461 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
6633 7462 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
6634 7463 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
6635 7464 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
6636 7465 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
6637 7466 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
6638 7467 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
6639 7468 2.070783 TGCGACGAGTAATTTGGAACC 58.929 47.619 0.00 0.00 0.00 3.62
6640 7469 1.060122 GCGACGAGTAATTTGGAACCG 59.940 52.381 0.00 0.00 0.00 4.44
6641 7470 2.598589 CGACGAGTAATTTGGAACCGA 58.401 47.619 0.00 0.00 0.00 4.69
6642 7471 2.597305 CGACGAGTAATTTGGAACCGAG 59.403 50.000 0.00 0.00 0.00 4.63
6643 7472 2.928116 GACGAGTAATTTGGAACCGAGG 59.072 50.000 0.00 0.00 0.00 4.63
6644 7473 2.277084 CGAGTAATTTGGAACCGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
6645 7474 2.093869 CGAGTAATTTGGAACCGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
6646 7475 3.532542 GAGTAATTTGGAACCGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
6681 7511 0.109597 GCAACCAGATTGTTGGCTCG 60.110 55.000 6.10 0.00 44.55 5.03
6740 7570 0.607217 GGGGGTTGTACCGAAGTTGG 60.607 60.000 0.00 0.00 39.83 3.77
6785 7615 1.821136 CCCTCAAAACAGCTGGGATTC 59.179 52.381 19.93 0.00 40.23 2.52
6812 7648 1.239347 GACTTGCTCAACCACCTTCC 58.761 55.000 0.00 0.00 0.00 3.46
6823 7659 2.040544 CACCTTCCGCCGCATTTCT 61.041 57.895 0.00 0.00 0.00 2.52
6872 7708 1.299976 GCGGGTCCTTCTCAATGGT 59.700 57.895 0.00 0.00 0.00 3.55
6918 7754 2.592993 CGAGGGTTGAGGCAAGGGA 61.593 63.158 0.00 0.00 0.00 4.20
6938 7774 3.182976 GAACCCTCTCCTACCTTTCCTT 58.817 50.000 0.00 0.00 0.00 3.36
6945 7781 5.377478 CTCTCCTACCTTTCCTTTTTGTGT 58.623 41.667 0.00 0.00 0.00 3.72
6963 7799 2.352960 GTGTTTGCGATTGATCCTCTCC 59.647 50.000 0.00 0.00 0.00 3.71
6977 7813 5.306419 TGATCCTCTCCACCATATTCTTCAG 59.694 44.000 0.00 0.00 0.00 3.02
7033 7869 3.750130 GGAGGAAATGTGATGATGATCCG 59.250 47.826 0.00 0.00 0.00 4.18
7071 7907 3.071479 GACGATGCTGTGGTTTTCCTTA 58.929 45.455 0.00 0.00 41.38 2.69
7102 7938 2.485814 AGCTGAAGTCAAATTCTTCGCC 59.514 45.455 13.38 4.21 42.68 5.54
7104 7940 1.804151 TGAAGTCAAATTCTTCGCCGG 59.196 47.619 0.00 0.00 42.68 6.13
7132 7968 3.056328 GGCTTTGGCGAGGTCACC 61.056 66.667 0.00 0.00 39.81 4.02
7195 8031 1.609783 CTTCATTCCTTCCCCGCCT 59.390 57.895 0.00 0.00 0.00 5.52
7198 8034 1.148498 CATTCCTTCCCCGCCTACC 59.852 63.158 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.181429 TGAAGTTCCTGGATGCCTTCTTT 60.181 43.478 21.70 3.00 34.15 2.52
58 59 0.716108 GAGTTGAACGTGCTGATCCG 59.284 55.000 0.00 0.00 0.00 4.18
88 89 2.588877 GTCATAGGCATGCGCGGT 60.589 61.111 12.44 0.00 39.92 5.68
130 131 0.317160 AAGTTCATCACGTGCCTCGA 59.683 50.000 11.67 1.13 42.86 4.04
152 153 0.748367 CACCCGAGTCTCGATCTCCA 60.748 60.000 23.74 0.00 43.74 3.86
182 183 5.585390 TGTTAAGAGTATTCGACCCGATTC 58.415 41.667 0.00 0.00 35.23 2.52
195 196 3.491964 CCATCCGCCGAATGTTAAGAGTA 60.492 47.826 0.00 0.00 0.00 2.59
197 198 1.867233 CCATCCGCCGAATGTTAAGAG 59.133 52.381 0.00 0.00 0.00 2.85
239 240 1.134694 GCAACAAGAATCGTCGGCC 59.865 57.895 0.00 0.00 0.00 6.13
241 242 0.721718 GGAGCAACAAGAATCGTCGG 59.278 55.000 0.00 0.00 0.00 4.79
244 251 0.320374 TCGGGAGCAACAAGAATCGT 59.680 50.000 0.00 0.00 0.00 3.73
252 259 0.172578 CACTATCGTCGGGAGCAACA 59.827 55.000 0.00 0.00 0.00 3.33
273 280 0.994247 ACCTTGCCATCTCCACATCA 59.006 50.000 0.00 0.00 0.00 3.07
276 283 1.619654 CAAACCTTGCCATCTCCACA 58.380 50.000 0.00 0.00 0.00 4.17
288 295 4.947147 TGCTCCCGCGCAAACCTT 62.947 61.111 8.75 0.00 39.65 3.50
322 329 2.126424 GAAGAACTCGCGCTCGGT 60.126 61.111 5.56 0.00 36.13 4.69
324 331 2.155194 CCAGAAGAACTCGCGCTCG 61.155 63.158 5.56 0.00 0.00 5.03
330 337 1.200252 TCGCTCTTCCAGAAGAACTCG 59.800 52.381 11.08 13.30 45.75 4.18
331 338 2.416701 CCTCGCTCTTCCAGAAGAACTC 60.417 54.545 11.08 3.53 45.75 3.01
332 339 1.548269 CCTCGCTCTTCCAGAAGAACT 59.452 52.381 11.08 0.00 45.75 3.01
333 340 2.003196 CCTCGCTCTTCCAGAAGAAC 57.997 55.000 11.08 6.20 45.75 3.01
334 341 0.247736 GCCTCGCTCTTCCAGAAGAA 59.752 55.000 11.08 0.00 45.75 2.52
335 342 1.608717 GGCCTCGCTCTTCCAGAAGA 61.609 60.000 9.64 9.64 44.47 2.87
336 343 1.153469 GGCCTCGCTCTTCCAGAAG 60.153 63.158 0.00 0.73 39.71 2.85
337 344 2.982130 GGCCTCGCTCTTCCAGAA 59.018 61.111 0.00 0.00 0.00 3.02
338 345 3.452786 CGGCCTCGCTCTTCCAGA 61.453 66.667 0.00 0.00 0.00 3.86
339 346 3.423162 CTCGGCCTCGCTCTTCCAG 62.423 68.421 0.00 0.00 36.13 3.86
340 347 3.452786 CTCGGCCTCGCTCTTCCA 61.453 66.667 0.00 0.00 36.13 3.53
341 348 4.882396 GCTCGGCCTCGCTCTTCC 62.882 72.222 0.00 0.00 36.13 3.46
342 349 3.649277 TTGCTCGGCCTCGCTCTTC 62.649 63.158 13.35 0.00 36.13 2.87
343 350 2.731691 TTTTGCTCGGCCTCGCTCTT 62.732 55.000 13.35 0.00 36.13 2.85
344 351 3.240134 TTTTGCTCGGCCTCGCTCT 62.240 57.895 13.35 0.00 36.13 4.09
345 352 2.742372 TTTTGCTCGGCCTCGCTC 60.742 61.111 13.35 0.00 36.13 5.03
346 353 2.731691 TTCTTTTGCTCGGCCTCGCT 62.732 55.000 13.35 0.00 36.13 4.93
347 354 2.245714 CTTCTTTTGCTCGGCCTCGC 62.246 60.000 0.00 3.27 36.13 5.03
348 355 0.670546 TCTTCTTTTGCTCGGCCTCG 60.671 55.000 0.00 0.00 37.82 4.63
349 356 1.466558 CTTCTTCTTTTGCTCGGCCTC 59.533 52.381 0.00 0.00 0.00 4.70
350 357 1.528129 CTTCTTCTTTTGCTCGGCCT 58.472 50.000 0.00 0.00 0.00 5.19
351 358 0.523519 CCTTCTTCTTTTGCTCGGCC 59.476 55.000 0.00 0.00 0.00 6.13
352 359 0.109551 GCCTTCTTCTTTTGCTCGGC 60.110 55.000 0.00 0.00 0.00 5.54
353 360 0.166814 CGCCTTCTTCTTTTGCTCGG 59.833 55.000 0.00 0.00 0.00 4.63
360 367 2.930826 TCTTCACCGCCTTCTTCTTT 57.069 45.000 0.00 0.00 0.00 2.52
404 411 0.544357 AGACTCAACGGGGATCACCA 60.544 55.000 16.00 0.00 42.91 4.17
429 436 0.896019 CCGAGTCATCCTAGCCCGAT 60.896 60.000 0.00 0.00 0.00 4.18
435 442 1.422024 TCCTCCTCCGAGTCATCCTAG 59.578 57.143 0.00 0.00 33.93 3.02
446 453 2.366590 TCACATTCATCATCCTCCTCCG 59.633 50.000 0.00 0.00 0.00 4.63
456 463 2.224402 TGTTGGGTCGTCACATTCATCA 60.224 45.455 0.00 0.00 0.00 3.07
459 466 2.217750 CTTGTTGGGTCGTCACATTCA 58.782 47.619 0.00 0.00 0.00 2.57
462 469 0.762418 TCCTTGTTGGGTCGTCACAT 59.238 50.000 0.00 0.00 36.20 3.21
463 470 0.179067 GTCCTTGTTGGGTCGTCACA 60.179 55.000 0.00 0.00 36.20 3.58
464 471 1.219522 CGTCCTTGTTGGGTCGTCAC 61.220 60.000 0.00 0.00 36.20 3.67
465 472 1.068417 CGTCCTTGTTGGGTCGTCA 59.932 57.895 0.00 0.00 36.20 4.35
468 478 2.100916 AGATATCGTCCTTGTTGGGTCG 59.899 50.000 0.00 0.00 36.20 4.79
473 483 4.038042 TGCTCCTAGATATCGTCCTTGTTG 59.962 45.833 0.00 0.00 0.00 3.33
475 485 3.823873 CTGCTCCTAGATATCGTCCTTGT 59.176 47.826 0.00 0.00 0.00 3.16
504 514 3.784701 AAACTACTCATCATCGTCGCT 57.215 42.857 0.00 0.00 0.00 4.93
793 803 9.499479 AGAGCATCGATGTATATTTGAAGATTT 57.501 29.630 25.47 0.00 42.67 2.17
1062 1113 3.671433 CGAATCCCACAAGCAATCTGTTG 60.671 47.826 0.00 0.00 38.39 3.33
1110 1188 2.427245 CGATCAAGCTCCCCTCCGT 61.427 63.158 0.00 0.00 0.00 4.69
1112 1190 2.066999 ACCGATCAAGCTCCCCTCC 61.067 63.158 0.00 0.00 0.00 4.30
1113 1191 1.144936 CACCGATCAAGCTCCCCTC 59.855 63.158 0.00 0.00 0.00 4.30
1114 1192 3.036429 GCACCGATCAAGCTCCCCT 62.036 63.158 0.00 0.00 0.00 4.79
1115 1193 2.514824 GCACCGATCAAGCTCCCC 60.515 66.667 0.00 0.00 0.00 4.81
1116 1194 2.892425 CGCACCGATCAAGCTCCC 60.892 66.667 0.00 0.00 0.00 4.30
1117 1195 2.892425 CCGCACCGATCAAGCTCC 60.892 66.667 0.00 0.00 0.00 4.70
1118 1196 2.125512 ACCGCACCGATCAAGCTC 60.126 61.111 0.00 0.00 0.00 4.09
1119 1197 2.244117 ATCACCGCACCGATCAAGCT 62.244 55.000 0.00 0.00 0.00 3.74
1120 1198 1.815421 ATCACCGCACCGATCAAGC 60.815 57.895 0.00 0.00 0.00 4.01
1121 1199 1.431488 CCATCACCGCACCGATCAAG 61.431 60.000 0.00 0.00 0.00 3.02
1122 1200 1.449423 CCATCACCGCACCGATCAA 60.449 57.895 0.00 0.00 0.00 2.57
1266 1344 0.329596 AGCTTGGCCTCGATTTCCTT 59.670 50.000 3.32 0.00 0.00 3.36
1444 1527 3.002791 CAACTATCGTTCACCAGTGCAT 58.997 45.455 0.00 0.00 0.00 3.96
1446 1529 1.128692 GCAACTATCGTTCACCAGTGC 59.871 52.381 0.00 0.00 0.00 4.40
1448 1531 1.000506 ACGCAACTATCGTTCACCAGT 59.999 47.619 0.00 0.00 36.72 4.00
1469 1619 9.720769 CTAAAGTTACTGTAAATCTTCCAGGAA 57.279 33.333 0.71 0.71 0.00 3.36
1475 1625 9.623350 AGACGTCTAAAGTTACTGTAAATCTTC 57.377 33.333 18.46 0.00 0.00 2.87
1499 1708 9.542462 GGCATTTCACATATACTTGTACTTAGA 57.458 33.333 0.00 0.00 0.00 2.10
1500 1709 8.487970 CGGCATTTCACATATACTTGTACTTAG 58.512 37.037 0.00 0.00 0.00 2.18
1501 1710 7.982919 ACGGCATTTCACATATACTTGTACTTA 59.017 33.333 0.00 0.00 0.00 2.24
1502 1711 6.821665 ACGGCATTTCACATATACTTGTACTT 59.178 34.615 0.00 0.00 0.00 2.24
1503 1712 6.346096 ACGGCATTTCACATATACTTGTACT 58.654 36.000 0.00 0.00 0.00 2.73
1504 1713 6.598753 ACGGCATTTCACATATACTTGTAC 57.401 37.500 0.00 0.00 0.00 2.90
1505 1714 8.896320 ATTACGGCATTTCACATATACTTGTA 57.104 30.769 0.00 0.00 0.00 2.41
1506 1715 7.801716 ATTACGGCATTTCACATATACTTGT 57.198 32.000 0.00 0.00 0.00 3.16
1507 1716 8.128582 ACAATTACGGCATTTCACATATACTTG 58.871 33.333 0.00 0.00 0.00 3.16
1508 1717 8.128582 CACAATTACGGCATTTCACATATACTT 58.871 33.333 0.00 0.00 0.00 2.24
1509 1718 7.497579 TCACAATTACGGCATTTCACATATACT 59.502 33.333 0.00 0.00 0.00 2.12
1510 1719 7.635423 TCACAATTACGGCATTTCACATATAC 58.365 34.615 0.00 0.00 0.00 1.47
1511 1720 7.793927 TCACAATTACGGCATTTCACATATA 57.206 32.000 0.00 0.00 0.00 0.86
1512 1721 6.691754 TCACAATTACGGCATTTCACATAT 57.308 33.333 0.00 0.00 0.00 1.78
1513 1722 6.502136 TTCACAATTACGGCATTTCACATA 57.498 33.333 0.00 0.00 0.00 2.29
1514 1723 5.384063 TTCACAATTACGGCATTTCACAT 57.616 34.783 0.00 0.00 0.00 3.21
1515 1724 4.837896 TTCACAATTACGGCATTTCACA 57.162 36.364 0.00 0.00 0.00 3.58
1516 1725 5.219633 ACTTTCACAATTACGGCATTTCAC 58.780 37.500 0.00 0.00 0.00 3.18
1517 1726 5.446143 ACTTTCACAATTACGGCATTTCA 57.554 34.783 0.00 0.00 0.00 2.69
1518 1727 5.388371 GCAACTTTCACAATTACGGCATTTC 60.388 40.000 0.00 0.00 0.00 2.17
1519 1728 4.447389 GCAACTTTCACAATTACGGCATTT 59.553 37.500 0.00 0.00 0.00 2.32
1520 1729 3.987220 GCAACTTTCACAATTACGGCATT 59.013 39.130 0.00 0.00 0.00 3.56
1521 1730 3.574614 GCAACTTTCACAATTACGGCAT 58.425 40.909 0.00 0.00 0.00 4.40
1522 1731 2.603412 CGCAACTTTCACAATTACGGCA 60.603 45.455 0.00 0.00 0.00 5.69
1523 1732 1.976045 CGCAACTTTCACAATTACGGC 59.024 47.619 0.00 0.00 0.00 5.68
1524 1733 2.970609 CACGCAACTTTCACAATTACGG 59.029 45.455 0.00 0.00 0.00 4.02
1525 1734 3.613563 ACACGCAACTTTCACAATTACG 58.386 40.909 0.00 0.00 0.00 3.18
1526 1735 6.086241 CACATACACGCAACTTTCACAATTAC 59.914 38.462 0.00 0.00 0.00 1.89
1527 1736 6.017852 TCACATACACGCAACTTTCACAATTA 60.018 34.615 0.00 0.00 0.00 1.40
1528 1737 4.975502 CACATACACGCAACTTTCACAATT 59.024 37.500 0.00 0.00 0.00 2.32
1529 1738 4.274705 TCACATACACGCAACTTTCACAAT 59.725 37.500 0.00 0.00 0.00 2.71
1530 1739 3.623510 TCACATACACGCAACTTTCACAA 59.376 39.130 0.00 0.00 0.00 3.33
1531 1740 3.198872 TCACATACACGCAACTTTCACA 58.801 40.909 0.00 0.00 0.00 3.58
1532 1741 3.870723 TCACATACACGCAACTTTCAC 57.129 42.857 0.00 0.00 0.00 3.18
1533 1742 4.572795 TCTTTCACATACACGCAACTTTCA 59.427 37.500 0.00 0.00 0.00 2.69
1534 1743 5.090652 TCTTTCACATACACGCAACTTTC 57.909 39.130 0.00 0.00 0.00 2.62
1535 1744 5.493133 TTCTTTCACATACACGCAACTTT 57.507 34.783 0.00 0.00 0.00 2.66
1536 1745 5.689383 ATTCTTTCACATACACGCAACTT 57.311 34.783 0.00 0.00 0.00 2.66
1537 1746 5.334879 GGAATTCTTTCACATACACGCAACT 60.335 40.000 5.23 0.00 33.23 3.16
1538 1747 4.851558 GGAATTCTTTCACATACACGCAAC 59.148 41.667 5.23 0.00 33.23 4.17
1539 1748 4.759693 AGGAATTCTTTCACATACACGCAA 59.240 37.500 5.23 0.00 33.23 4.85
1540 1749 4.323417 AGGAATTCTTTCACATACACGCA 58.677 39.130 5.23 0.00 33.23 5.24
1541 1750 4.946784 AGGAATTCTTTCACATACACGC 57.053 40.909 5.23 0.00 33.23 5.34
1542 1751 6.086222 CCAAAGGAATTCTTTCACATACACG 58.914 40.000 2.96 0.00 43.32 4.49
1543 1752 6.981722 ACCAAAGGAATTCTTTCACATACAC 58.018 36.000 2.96 0.00 43.32 2.90
1544 1753 7.286546 TCAACCAAAGGAATTCTTTCACATACA 59.713 33.333 2.96 0.00 43.32 2.29
1545 1754 7.657336 TCAACCAAAGGAATTCTTTCACATAC 58.343 34.615 2.96 0.00 43.32 2.39
1546 1755 7.523709 GCTCAACCAAAGGAATTCTTTCACATA 60.524 37.037 2.96 0.00 43.32 2.29
1547 1756 6.729690 TCAACCAAAGGAATTCTTTCACAT 57.270 33.333 2.96 0.00 43.32 3.21
1606 1827 2.424956 CGACTACCTACCGCCTAAAAGT 59.575 50.000 0.00 0.00 0.00 2.66
1607 1828 2.424956 ACGACTACCTACCGCCTAAAAG 59.575 50.000 0.00 0.00 0.00 2.27
1608 1829 2.164219 CACGACTACCTACCGCCTAAAA 59.836 50.000 0.00 0.00 0.00 1.52
1612 1833 0.747283 CTCACGACTACCTACCGCCT 60.747 60.000 0.00 0.00 0.00 5.52
1613 1834 1.726265 CTCACGACTACCTACCGCC 59.274 63.158 0.00 0.00 0.00 6.13
1614 1835 1.063811 GCTCACGACTACCTACCGC 59.936 63.158 0.00 0.00 0.00 5.68
1615 1836 0.747283 AGGCTCACGACTACCTACCG 60.747 60.000 0.00 0.00 0.00 4.02
1616 1837 0.739561 CAGGCTCACGACTACCTACC 59.260 60.000 0.00 0.00 0.00 3.18
1617 1838 1.461559 ACAGGCTCACGACTACCTAC 58.538 55.000 0.00 0.00 0.00 3.18
1618 1839 2.211250 AACAGGCTCACGACTACCTA 57.789 50.000 0.00 0.00 0.00 3.08
1619 1840 2.211250 TAACAGGCTCACGACTACCT 57.789 50.000 0.00 0.00 0.00 3.08
1620 1841 2.223758 GGATAACAGGCTCACGACTACC 60.224 54.545 0.00 0.00 0.00 3.18
1621 1842 2.688958 AGGATAACAGGCTCACGACTAC 59.311 50.000 0.00 0.00 0.00 2.73
1622 1843 2.950309 GAGGATAACAGGCTCACGACTA 59.050 50.000 0.00 0.00 0.00 2.59
1623 1844 1.751924 GAGGATAACAGGCTCACGACT 59.248 52.381 0.00 0.00 0.00 4.18
1624 1845 1.534175 CGAGGATAACAGGCTCACGAC 60.534 57.143 0.00 0.00 0.00 4.34
1625 1846 0.738975 CGAGGATAACAGGCTCACGA 59.261 55.000 0.00 0.00 0.00 4.35
1626 1847 0.456221 ACGAGGATAACAGGCTCACG 59.544 55.000 0.00 0.00 0.00 4.35
1627 1848 1.751924 AGACGAGGATAACAGGCTCAC 59.248 52.381 0.00 0.00 0.00 3.51
1628 1849 2.145397 AGACGAGGATAACAGGCTCA 57.855 50.000 0.00 0.00 0.00 4.26
1629 1850 2.166664 ACAAGACGAGGATAACAGGCTC 59.833 50.000 0.00 0.00 0.00 4.70
1630 1851 2.180276 ACAAGACGAGGATAACAGGCT 58.820 47.619 0.00 0.00 0.00 4.58
1631 1852 2.673368 CAACAAGACGAGGATAACAGGC 59.327 50.000 0.00 0.00 0.00 4.85
1632 1853 2.673368 GCAACAAGACGAGGATAACAGG 59.327 50.000 0.00 0.00 0.00 4.00
1633 1854 2.345641 CGCAACAAGACGAGGATAACAG 59.654 50.000 0.00 0.00 0.00 3.16
1634 1855 2.288579 ACGCAACAAGACGAGGATAACA 60.289 45.455 0.00 0.00 0.00 2.41
1635 1856 2.334838 ACGCAACAAGACGAGGATAAC 58.665 47.619 0.00 0.00 0.00 1.89
1636 1857 2.736144 ACGCAACAAGACGAGGATAA 57.264 45.000 0.00 0.00 0.00 1.75
1637 1858 2.736144 AACGCAACAAGACGAGGATA 57.264 45.000 0.00 0.00 0.00 2.59
1638 1859 1.798813 GAAACGCAACAAGACGAGGAT 59.201 47.619 0.00 0.00 0.00 3.24
1639 1860 1.214367 GAAACGCAACAAGACGAGGA 58.786 50.000 0.00 0.00 0.00 3.71
1640 1861 0.234884 GGAAACGCAACAAGACGAGG 59.765 55.000 0.00 0.00 0.00 4.63
1641 1862 1.070577 CAGGAAACGCAACAAGACGAG 60.071 52.381 0.00 0.00 0.00 4.18
1642 1863 0.934496 CAGGAAACGCAACAAGACGA 59.066 50.000 0.00 0.00 0.00 4.20
1643 1864 0.657368 GCAGGAAACGCAACAAGACG 60.657 55.000 0.00 0.00 0.00 4.18
1644 1865 0.663153 AGCAGGAAACGCAACAAGAC 59.337 50.000 0.00 0.00 33.30 3.01
1645 1866 0.662619 CAGCAGGAAACGCAACAAGA 59.337 50.000 0.00 0.00 33.30 3.02
1646 1867 0.381801 ACAGCAGGAAACGCAACAAG 59.618 50.000 0.00 0.00 33.30 3.16
1647 1868 0.814457 AACAGCAGGAAACGCAACAA 59.186 45.000 0.00 0.00 33.30 2.83
1648 1869 0.100325 CAACAGCAGGAAACGCAACA 59.900 50.000 0.00 0.00 33.30 3.33
1687 1909 8.993424 AGGAACAATACCACTTCTGTAGAATAT 58.007 33.333 0.00 0.00 33.01 1.28
1734 1957 9.962783 ATTTCACATACTTATACTTAGACGTCC 57.037 33.333 13.01 0.00 0.00 4.79
1764 1992 4.035909 ACCCACAACTTTCACAATTACGAC 59.964 41.667 0.00 0.00 0.00 4.34
1765 1993 4.200874 ACCCACAACTTTCACAATTACGA 58.799 39.130 0.00 0.00 0.00 3.43
1766 1994 4.561735 ACCCACAACTTTCACAATTACG 57.438 40.909 0.00 0.00 0.00 3.18
1810 2039 4.081476 ACGACTACCTACCGCCTAATTTTT 60.081 41.667 0.00 0.00 0.00 1.94
1812 2041 3.026694 ACGACTACCTACCGCCTAATTT 58.973 45.455 0.00 0.00 0.00 1.82
1813 2042 2.360165 CACGACTACCTACCGCCTAATT 59.640 50.000 0.00 0.00 0.00 1.40
1814 2043 1.952296 CACGACTACCTACCGCCTAAT 59.048 52.381 0.00 0.00 0.00 1.73
1816 2045 0.541392 TCACGACTACCTACCGCCTA 59.459 55.000 0.00 0.00 0.00 3.93
1817 2046 0.747283 CTCACGACTACCTACCGCCT 60.747 60.000 0.00 0.00 0.00 5.52
1851 2124 4.776647 GCAATTCGTGGCACCCGC 62.777 66.667 12.86 3.90 37.44 6.13
1896 2170 6.513180 GGAAAACCCCAAACTAAAGAAGAAG 58.487 40.000 0.00 0.00 0.00 2.85
2019 2488 9.845740 AACTTTCCTTTTAACAGGCAATAATTT 57.154 25.926 2.52 0.00 33.35 1.82
2103 2607 9.673454 CCTAACAAACTACAATAAACCTGAAAC 57.327 33.333 0.00 0.00 0.00 2.78
2116 2639 8.685838 AAAGCAAACTATCCTAACAAACTACA 57.314 30.769 0.00 0.00 0.00 2.74
2125 2648 7.224753 GTCGATGATGAAAGCAAACTATCCTAA 59.775 37.037 0.00 0.00 33.49 2.69
2174 2700 2.478894 GCAGTACAAGTGCAACGTATGT 59.521 45.455 0.00 0.00 43.79 2.29
2175 2701 2.736721 AGCAGTACAAGTGCAACGTATG 59.263 45.455 9.25 0.00 46.65 2.39
2176 2702 2.736721 CAGCAGTACAAGTGCAACGTAT 59.263 45.455 9.25 0.00 46.65 3.06
2177 2703 2.131972 CAGCAGTACAAGTGCAACGTA 58.868 47.619 9.25 0.00 46.65 3.57
2178 2704 0.937304 CAGCAGTACAAGTGCAACGT 59.063 50.000 9.25 0.00 46.65 3.99
2179 2705 1.217001 TCAGCAGTACAAGTGCAACG 58.783 50.000 9.25 0.00 46.65 4.10
2180 2706 3.691049 TTTCAGCAGTACAAGTGCAAC 57.309 42.857 9.25 0.00 46.65 4.17
2221 2747 4.074970 AGGATTACAGCAACCAACAGAAG 58.925 43.478 0.00 0.00 0.00 2.85
2234 2761 1.807814 AGCCCCTACCAGGATTACAG 58.192 55.000 0.00 0.00 37.67 2.74
2269 2806 8.347035 TCAAACCTTCTATTAACCAAAAGAACG 58.653 33.333 0.00 0.00 0.00 3.95
2284 2822 6.539173 TGGCTAATTCACTTCAAACCTTCTA 58.461 36.000 0.00 0.00 0.00 2.10
2307 2846 7.645402 TGAGCTAATTTGATCAAGCATGTATG 58.355 34.615 17.19 0.00 37.44 2.39
2328 2867 4.620184 GCAGAGAAACAATTGAACATGAGC 59.380 41.667 13.59 5.01 0.00 4.26
2686 3271 1.763770 CTTCTGCACCAGGGACCTT 59.236 57.895 0.00 0.00 31.51 3.50
2739 3324 3.209410 CGCTTTTCCAGGATAGCAGATT 58.791 45.455 19.20 0.00 33.29 2.40
2788 3373 6.365970 TTCCTCTTCTCAGCTTCTAACAAT 57.634 37.500 0.00 0.00 0.00 2.71
2818 3403 2.340337 TGAATATGCATGATCCGAGCG 58.660 47.619 10.16 0.00 0.00 5.03
2825 3410 5.358725 TGTCTGCTTGTTGAATATGCATGAT 59.641 36.000 10.16 0.00 33.02 2.45
2886 3471 9.248291 GTTTGCTTTCAAGATGTTCTTTCAATA 57.752 29.630 0.00 0.00 33.78 1.90
2939 3524 5.532025 AGAACTAAAACTGTAATCAGCGC 57.468 39.130 0.00 0.00 44.77 5.92
2997 3584 1.349026 CTCTTCCTCTTGGCCTGTTCA 59.651 52.381 3.32 0.00 0.00 3.18
3020 3607 5.471456 CCTCCTCGCTGCTTTAAATATTCAT 59.529 40.000 0.00 0.00 0.00 2.57
3030 3617 1.557269 ATGGACCTCCTCGCTGCTTT 61.557 55.000 0.00 0.00 36.82 3.51
3342 3934 4.844349 AATGCCTTAGTAGCCTCAAGAA 57.156 40.909 0.00 0.00 0.00 2.52
3633 4225 0.457443 TGCTGACTCCATGAGTAGCG 59.543 55.000 14.83 0.00 43.53 4.26
3693 4285 2.678934 TTCCCGGTCCCTCGAGTG 60.679 66.667 12.31 0.00 0.00 3.51
3750 4342 6.868622 ACATCATCAGACTTCTGGTAACTAC 58.131 40.000 6.40 0.00 43.91 2.73
3899 4491 1.585006 GCTCAAGCTTGCATGCAGT 59.415 52.632 24.65 6.98 38.21 4.40
4021 4613 2.902608 TGCTGAACCTTCTCCCTTAGA 58.097 47.619 0.00 0.00 0.00 2.10
4108 4700 3.077359 ACTTCCATTCTCCTTTGCTTCG 58.923 45.455 0.00 0.00 0.00 3.79
4301 4944 0.467844 TTGCCAGCAATCACACCACT 60.468 50.000 0.00 0.00 0.00 4.00
4308 4951 5.737922 GCATCATTAGAATTGCCAGCAATCA 60.738 40.000 17.63 4.55 44.86 2.57
4372 5015 4.042809 TCCCAGAAAGCTTTCTCCATTGTA 59.957 41.667 33.73 15.22 45.23 2.41
4416 5059 3.244249 GCTGTAGTCAGGTTTGTCTCCTT 60.244 47.826 0.00 0.00 41.57 3.36
4630 5287 5.421056 TCGAGTACCTTCATTTGTACAGGAT 59.579 40.000 3.75 0.00 39.79 3.24
5018 5690 0.908910 TCCAGCCGAGCCTTTTATCA 59.091 50.000 0.00 0.00 0.00 2.15
5043 5715 1.407437 CCGAAAGCCTTCTGCAGGTAT 60.407 52.381 15.13 0.00 46.07 2.73
5072 5744 0.811616 CGCATTAGCAGGAGGTCCAC 60.812 60.000 0.00 0.00 42.27 4.02
5111 5783 1.527034 TGCTGAAATCCACTGCAGAC 58.473 50.000 23.35 3.20 37.31 3.51
5205 5877 5.299582 AGACTCTGCGTAGTTAGAAACTC 57.700 43.478 0.00 0.00 41.77 3.01
5216 5907 5.299531 ACTGATGCTATTAAGACTCTGCGTA 59.700 40.000 0.00 0.00 0.00 4.42
5219 5910 5.633182 GCTACTGATGCTATTAAGACTCTGC 59.367 44.000 0.00 0.00 0.00 4.26
5220 5911 6.743110 TGCTACTGATGCTATTAAGACTCTG 58.257 40.000 0.00 0.00 0.00 3.35
5221 5912 6.968263 TGCTACTGATGCTATTAAGACTCT 57.032 37.500 0.00 0.00 0.00 3.24
5222 5913 7.487829 GCTATGCTACTGATGCTATTAAGACTC 59.512 40.741 0.00 0.00 0.00 3.36
5223 5914 7.319646 GCTATGCTACTGATGCTATTAAGACT 58.680 38.462 0.00 0.00 0.00 3.24
5224 5915 6.252441 CGCTATGCTACTGATGCTATTAAGAC 59.748 42.308 0.00 0.00 0.00 3.01
5225 5916 6.325596 CGCTATGCTACTGATGCTATTAAGA 58.674 40.000 0.00 0.00 0.00 2.10
5226 5917 5.518128 CCGCTATGCTACTGATGCTATTAAG 59.482 44.000 0.00 0.00 0.00 1.85
5227 5918 5.410924 CCGCTATGCTACTGATGCTATTAA 58.589 41.667 0.00 0.00 0.00 1.40
5228 5919 4.678044 GCCGCTATGCTACTGATGCTATTA 60.678 45.833 0.00 0.00 0.00 0.98
5229 5920 3.854666 CCGCTATGCTACTGATGCTATT 58.145 45.455 0.00 0.00 0.00 1.73
5230 5921 2.417924 GCCGCTATGCTACTGATGCTAT 60.418 50.000 0.00 0.00 0.00 2.97
5231 5922 1.067565 GCCGCTATGCTACTGATGCTA 60.068 52.381 0.00 0.00 0.00 3.49
5232 5923 0.320247 GCCGCTATGCTACTGATGCT 60.320 55.000 0.00 0.00 0.00 3.79
5233 5924 0.601046 TGCCGCTATGCTACTGATGC 60.601 55.000 0.00 0.00 0.00 3.91
5234 5925 2.090400 ATGCCGCTATGCTACTGATG 57.910 50.000 0.00 0.00 0.00 3.07
5278 5969 5.253330 CCTGCCACAAAGGATTAAACTAGA 58.747 41.667 0.00 0.00 41.22 2.43
5445 6139 2.101783 CAATTGCAAGCCCTCCATACA 58.898 47.619 4.94 0.00 0.00 2.29
5466 6160 2.094234 GGAAGCTCTCAGGAGTTGACTC 60.094 54.545 2.51 2.51 41.38 3.36
5708 6404 3.178267 CGAAGAGTTCTGAGATGACAGC 58.822 50.000 0.00 0.00 37.75 4.40
5739 6435 1.576356 GGAGTTATCCAGCAGCTTCG 58.424 55.000 0.00 0.00 45.87 3.79
6013 6709 3.764466 CGGTCAGCGAGCTTCCCT 61.764 66.667 0.00 0.00 0.00 4.20
6094 6790 2.106683 GGCGAGCGCTTTGTACCAT 61.107 57.895 13.26 0.00 41.60 3.55
6163 6860 5.614760 CGGAACAAGAATTTACAACCGTAG 58.385 41.667 0.00 0.00 34.39 3.51
6164 6861 4.083908 GCGGAACAAGAATTTACAACCGTA 60.084 41.667 0.00 0.00 39.95 4.02
6183 6880 1.198094 TTCCCACCTCATTCAGCGGA 61.198 55.000 0.00 0.00 0.00 5.54
6190 6887 3.962718 CAATGGCTTATTCCCACCTCATT 59.037 43.478 0.00 0.00 34.68 2.57
6247 6963 2.507407 TGCCCTACACCAAGAATTCC 57.493 50.000 0.65 0.00 0.00 3.01
6310 7035 2.048603 GGTCACCCAGCTGCCATTC 61.049 63.158 8.66 0.00 0.00 2.67
6317 7042 1.198759 ATTACACGGGTCACCCAGCT 61.199 55.000 15.17 0.00 45.83 4.24
6318 7043 1.024579 CATTACACGGGTCACCCAGC 61.025 60.000 15.17 0.00 45.83 4.85
6319 7044 1.024579 GCATTACACGGGTCACCCAG 61.025 60.000 15.17 7.29 45.83 4.45
6320 7045 1.003112 GCATTACACGGGTCACCCA 60.003 57.895 15.17 0.00 45.83 4.51
6321 7046 1.747745 GGCATTACACGGGTCACCC 60.748 63.158 1.06 1.06 41.09 4.61
6322 7047 0.606944 TTGGCATTACACGGGTCACC 60.607 55.000 0.00 0.00 0.00 4.02
6323 7048 1.459450 ATTGGCATTACACGGGTCAC 58.541 50.000 0.00 0.00 0.00 3.67
6324 7049 3.351794 TTATTGGCATTACACGGGTCA 57.648 42.857 0.00 0.00 0.00 4.02
6325 7050 3.004315 CCATTATTGGCATTACACGGGTC 59.996 47.826 0.00 0.00 35.85 4.46
6343 7083 5.420725 TCTATTACACTGACTGCACCATT 57.579 39.130 0.00 0.00 0.00 3.16
6526 7354 9.702253 CAGAGGGAGTAGATATATAAAGCCTTA 57.298 37.037 0.00 0.00 0.00 2.69
6542 7371 4.607239 AGTAATTCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
6543 7372 3.442076 AGTAATTCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
6544 7373 4.184629 CAAGTAATTCGGAACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
6545 7374 3.581332 ACAAGTAATTCGGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
6546 7375 3.933332 GACAAGTAATTCGGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
6547 7376 3.612860 CGACAAGTAATTCGGAACAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
6548 7377 3.060895 GCGACAAGTAATTCGGAACAGAG 59.939 47.826 0.00 0.00 35.73 3.35
6549 7378 2.991190 GCGACAAGTAATTCGGAACAGA 59.009 45.455 0.00 0.00 35.73 3.41
6550 7379 2.734606 TGCGACAAGTAATTCGGAACAG 59.265 45.455 0.00 0.00 35.73 3.16
6551 7380 2.734606 CTGCGACAAGTAATTCGGAACA 59.265 45.455 0.00 0.00 35.02 3.18
6552 7381 2.991190 TCTGCGACAAGTAATTCGGAAC 59.009 45.455 0.00 0.00 35.02 3.62
6553 7382 3.306917 TCTGCGACAAGTAATTCGGAA 57.693 42.857 0.00 0.00 35.02 4.30
6554 7383 3.520290 ATCTGCGACAAGTAATTCGGA 57.480 42.857 0.00 0.00 35.73 4.55
6555 7384 4.150627 CCATATCTGCGACAAGTAATTCGG 59.849 45.833 0.00 0.00 35.73 4.30
6556 7385 4.982295 TCCATATCTGCGACAAGTAATTCG 59.018 41.667 0.00 0.00 38.31 3.34
6557 7386 6.425114 ACATCCATATCTGCGACAAGTAATTC 59.575 38.462 0.00 0.00 0.00 2.17
6558 7387 6.291377 ACATCCATATCTGCGACAAGTAATT 58.709 36.000 0.00 0.00 0.00 1.40
6559 7388 5.858381 ACATCCATATCTGCGACAAGTAAT 58.142 37.500 0.00 0.00 0.00 1.89
6560 7389 5.276461 ACATCCATATCTGCGACAAGTAA 57.724 39.130 0.00 0.00 0.00 2.24
6561 7390 4.937201 ACATCCATATCTGCGACAAGTA 57.063 40.909 0.00 0.00 0.00 2.24
6562 7391 3.827008 ACATCCATATCTGCGACAAGT 57.173 42.857 0.00 0.00 0.00 3.16
6563 7392 5.718146 AGATACATCCATATCTGCGACAAG 58.282 41.667 0.00 0.00 39.87 3.16
6564 7393 5.728637 AGATACATCCATATCTGCGACAA 57.271 39.130 0.00 0.00 39.87 3.18
6565 7394 6.180472 TCTAGATACATCCATATCTGCGACA 58.820 40.000 5.70 0.00 41.17 4.35
6566 7395 6.685527 TCTAGATACATCCATATCTGCGAC 57.314 41.667 5.70 0.00 41.17 5.19
6567 7396 6.830838 ACATCTAGATACATCCATATCTGCGA 59.169 38.462 4.54 3.39 41.17 5.10
6568 7397 7.036996 ACATCTAGATACATCCATATCTGCG 57.963 40.000 4.54 0.00 41.17 5.18
6595 7424 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
6596 7425 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
6597 7426 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
6598 7427 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
6599 7428 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
6600 7429 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
6601 7430 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
6602 7431 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
6603 7432 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
6604 7433 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
6605 7434 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
6606 7435 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
6607 7436 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
6608 7437 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
6609 7438 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
6610 7439 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
6611 7440 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
6612 7441 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
6613 7442 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
6614 7443 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
6615 7444 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
6616 7445 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
6617 7446 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
6618 7447 2.093783 GGTTCCAAATTACTCGTCGCAG 59.906 50.000 0.00 0.00 0.00 5.18
6619 7448 2.070783 GGTTCCAAATTACTCGTCGCA 58.929 47.619 0.00 0.00 0.00 5.10
6620 7449 1.060122 CGGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
6621 7450 2.597305 CTCGGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
6622 7451 2.928116 CCTCGGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
6623 7452 2.354403 CCCTCGGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
6624 7453 2.093869 TCCCTCGGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
6625 7454 3.055312 ACTCCCTCGGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
6626 7455 2.910977 ACTCCCTCGGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
6627 7456 3.345508 ACTCCCTCGGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
6628 7457 3.118519 GCTACTCCCTCGGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
6629 7458 2.355818 GCTACTCCCTCGGTTCCAAATT 60.356 50.000 0.00 0.00 0.00 1.82
6630 7459 1.209747 GCTACTCCCTCGGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
6631 7460 0.611714 GCTACTCCCTCGGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
6632 7461 0.252103 AGCTACTCCCTCGGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
6633 7462 0.683504 GAGCTACTCCCTCGGTTCCA 60.684 60.000 0.00 0.00 0.00 3.53
6634 7463 0.396001 AGAGCTACTCCCTCGGTTCC 60.396 60.000 0.00 0.00 34.56 3.62
6635 7464 1.476477 AAGAGCTACTCCCTCGGTTC 58.524 55.000 0.00 0.00 34.56 3.62
6636 7465 1.550976 CAAAGAGCTACTCCCTCGGTT 59.449 52.381 0.00 0.00 34.56 4.44
6637 7466 1.187087 CAAAGAGCTACTCCCTCGGT 58.813 55.000 0.00 0.00 34.56 4.69
6638 7467 0.179097 GCAAAGAGCTACTCCCTCGG 60.179 60.000 0.00 0.00 41.15 4.63
6639 7468 3.354131 GCAAAGAGCTACTCCCTCG 57.646 57.895 0.00 0.00 41.15 4.63
6785 7615 1.528129 GTTGAGCAAGTCAAGGAGGG 58.472 55.000 0.00 0.00 46.18 4.30
6812 7648 2.821366 AGCCTCAGAAATGCGGCG 60.821 61.111 0.51 0.51 46.85 6.46
6918 7754 3.293215 AAGGAAAGGTAGGAGAGGGTT 57.707 47.619 0.00 0.00 0.00 4.11
6923 7759 5.382664 ACACAAAAAGGAAAGGTAGGAGA 57.617 39.130 0.00 0.00 0.00 3.71
6927 7763 4.502645 CGCAAACACAAAAAGGAAAGGTAG 59.497 41.667 0.00 0.00 0.00 3.18
6928 7764 4.158025 TCGCAAACACAAAAAGGAAAGGTA 59.842 37.500 0.00 0.00 0.00 3.08
6933 7769 4.748892 TCAATCGCAAACACAAAAAGGAA 58.251 34.783 0.00 0.00 0.00 3.36
6938 7774 4.278170 AGAGGATCAATCGCAAACACAAAA 59.722 37.500 0.00 0.00 37.82 2.44
6945 7781 2.632377 GTGGAGAGGATCAATCGCAAA 58.368 47.619 0.00 0.00 37.82 3.68
6963 7799 3.629398 GTGGCCTTCTGAAGAATATGGTG 59.371 47.826 18.68 0.74 33.01 4.17
6977 7813 2.935740 GCCTTGCTTGGTGGCCTTC 61.936 63.158 3.32 0.00 40.71 3.46
7033 7869 2.217038 TCCGCATATGAGGAGGCCC 61.217 63.158 22.76 0.00 39.12 5.80
7071 7907 2.778299 TGACTTCAGCTTTAATGGCGT 58.222 42.857 0.00 0.00 34.52 5.68
7102 7938 2.551912 AAAGCCCGCAAGTGTTCCG 61.552 57.895 0.00 0.00 0.00 4.30
7104 7940 1.007387 CCAAAGCCCGCAAGTGTTC 60.007 57.895 0.00 0.00 0.00 3.18
7132 7968 1.008538 GCAGTTTGTGACCAAGCCG 60.009 57.895 0.00 0.00 32.69 5.52
7195 8031 0.858369 ATAGGGAAGGAGGAGCGGTA 59.142 55.000 0.00 0.00 0.00 4.02
7198 8034 1.414158 TTCATAGGGAAGGAGGAGCG 58.586 55.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.