Multiple sequence alignment - TraesCS2A01G306400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G306400 chr2A 100.000 6511 0 0 1 6511 527110520 527104010 0.000000e+00 12024.0
1 TraesCS2A01G306400 chr2A 88.747 471 48 3 5869 6336 61477553 61477085 7.320000e-159 571.0
2 TraesCS2A01G306400 chr2A 92.479 359 26 1 1 358 527175107 527174749 4.500000e-141 512.0
3 TraesCS2A01G306400 chr2A 92.479 359 26 1 1 358 763556320 763555962 4.500000e-141 512.0
4 TraesCS2A01G306400 chr2D 92.998 3142 152 29 3325 6428 390705432 390702321 0.000000e+00 4521.0
5 TraesCS2A01G306400 chr2D 91.698 2650 134 42 360 2970 390708834 390706232 0.000000e+00 3596.0
6 TraesCS2A01G306400 chr2D 97.125 313 7 2 3018 3329 390706237 390705926 1.610000e-145 527.0
7 TraesCS2A01G306400 chr2D 77.831 627 119 16 5897 6510 367587670 367588289 2.870000e-98 370.0
8 TraesCS2A01G306400 chr2D 81.933 238 39 4 6096 6332 440338924 440339158 1.430000e-46 198.0
9 TraesCS2A01G306400 chr2D 94.531 128 4 1 6385 6509 390702321 390702194 1.850000e-45 195.0
10 TraesCS2A01G306400 chr2D 97.778 45 1 0 2970 3014 420596016 420596060 1.950000e-10 78.7
11 TraesCS2A01G306400 chr2B 88.818 1869 94 40 360 2162 461741670 461739851 0.000000e+00 2187.0
12 TraesCS2A01G306400 chr2B 88.256 1439 104 31 5111 6511 461736386 461734975 0.000000e+00 1661.0
13 TraesCS2A01G306400 chr2B 86.388 1315 124 40 3040 4345 461738839 461737571 0.000000e+00 1386.0
14 TraesCS2A01G306400 chr2B 94.172 755 34 4 4365 5110 461737377 461736624 0.000000e+00 1142.0
15 TraesCS2A01G306400 chr2B 90.256 821 57 9 2160 2969 461739664 461738856 0.000000e+00 1051.0
16 TraesCS2A01G306400 chr2B 84.530 181 23 2 6004 6180 39795229 39795408 2.410000e-39 174.0
17 TraesCS2A01G306400 chr2B 85.263 95 12 2 5868 5960 13367690 13367596 5.370000e-16 97.1
18 TraesCS2A01G306400 chr6A 93.017 358 25 0 1 358 46780568 46780211 2.080000e-144 523.0
19 TraesCS2A01G306400 chr6A 83.444 151 25 0 1540 1690 139147937 139147787 2.450000e-29 141.0
20 TraesCS2A01G306400 chr4A 92.758 359 25 1 1 358 580494494 580494136 9.680000e-143 518.0
21 TraesCS2A01G306400 chr4A 92.758 359 25 1 1 358 580500332 580499974 9.680000e-143 518.0
22 TraesCS2A01G306400 chr7A 92.737 358 25 1 1 358 259362242 259361886 3.480000e-142 516.0
23 TraesCS2A01G306400 chr7A 92.500 360 26 1 1 359 451989241 451989600 1.250000e-141 514.0
24 TraesCS2A01G306400 chr7A 92.676 355 24 2 1 353 451983387 451983741 1.620000e-140 510.0
25 TraesCS2A01G306400 chr7A 100.000 41 0 0 2971 3011 2682869 2682909 7.000000e-10 76.8
26 TraesCS2A01G306400 chr4D 92.676 355 26 0 1 355 374160017 374160371 4.500000e-141 512.0
27 TraesCS2A01G306400 chr5D 86.496 274 35 2 6000 6273 63485382 63485653 3.820000e-77 300.0
28 TraesCS2A01G306400 chr6D 86.631 187 24 1 5869 6055 463536894 463536709 8.560000e-49 206.0
29 TraesCS2A01G306400 chr6D 83.444 151 25 0 1540 1690 112817065 112817215 2.450000e-29 141.0
30 TraesCS2A01G306400 chr6D 91.228 57 5 0 2970 3026 397797872 397797816 1.950000e-10 78.7
31 TraesCS2A01G306400 chr5A 77.551 294 56 10 6004 6293 567603044 567602757 1.120000e-37 169.0
32 TraesCS2A01G306400 chr5B 75.410 183 43 2 6021 6202 592907342 592907161 3.230000e-13 87.9
33 TraesCS2A01G306400 chr5B 100.000 42 0 0 2970 3011 703718093 703718052 1.950000e-10 78.7
34 TraesCS2A01G306400 chr7D 97.826 46 0 1 2970 3014 24822653 24822608 1.950000e-10 78.7
35 TraesCS2A01G306400 chr7B 100.000 42 0 0 2972 3013 615733468 615733509 1.950000e-10 78.7
36 TraesCS2A01G306400 chr7B 96.970 33 1 0 6462 6494 44874255 44874287 1.000000e-03 56.5
37 TraesCS2A01G306400 chr1B 100.000 41 0 0 2971 3011 636067804 636067844 7.000000e-10 76.8
38 TraesCS2A01G306400 chr1B 95.556 45 2 0 2970 3014 554749769 554749725 9.060000e-09 73.1
39 TraesCS2A01G306400 chrUn 97.727 44 0 1 2968 3011 108274841 108274799 2.520000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G306400 chr2A 527104010 527110520 6510 True 12024.00 12024 100.000 1 6511 1 chr2A.!!$R2 6510
1 TraesCS2A01G306400 chr2D 390702194 390708834 6640 True 2209.75 4521 94.088 360 6509 4 chr2D.!!$R1 6149
2 TraesCS2A01G306400 chr2D 367587670 367588289 619 False 370.00 370 77.831 5897 6510 1 chr2D.!!$F1 613
3 TraesCS2A01G306400 chr2B 461734975 461741670 6695 True 1485.40 2187 89.578 360 6511 5 chr2B.!!$R2 6151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.034863 TTAAAAGCTCCCGCCGGATT 60.035 50.0 5.05 0.0 37.60 3.01 F
667 688 0.246635 AAATGGAGGTGGTCGTCTCG 59.753 55.0 0.00 0.0 0.00 4.04 F
1271 1338 0.034477 GCGGGGATTCTTTCCTTCCA 60.034 55.0 0.00 0.0 44.75 3.53 F
1802 1906 0.530744 CTGCATTGCATTGCTCTGGT 59.469 50.0 28.14 0.0 43.18 4.00 F
2998 3307 0.033405 GGAAAAGGAGGCTTACCCCC 60.033 60.0 0.00 0.0 36.11 5.40 F
2999 3308 0.393944 GAAAAGGAGGCTTACCCCCG 60.394 60.0 0.00 0.0 36.11 5.73 F
4977 5980 0.539518 TACCAAATGCGCTCTAGCCA 59.460 50.0 9.73 0.0 37.91 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1197 1263 0.251165 CCCCGCCCAGAAAGAAAGAA 60.251 55.000 0.00 0.0 0.00 2.52 R
2182 2480 0.392863 TGACGGAATGCCCATCACAG 60.393 55.000 0.00 0.0 34.14 3.66 R
2999 3308 0.678048 AAAAGTCGGATGCAGAGGCC 60.678 55.000 0.00 0.0 40.13 5.19 R
3381 4191 1.271597 CCCTATGGCTATGGACTTGCC 60.272 57.143 0.00 0.0 44.98 4.52 R
4988 5991 0.315886 TGTCTGAAAACGAGCGCCTA 59.684 50.000 2.29 0.0 0.00 3.93 R
4992 5995 1.487482 TGTCTGTCTGAAAACGAGCG 58.513 50.000 0.00 0.0 0.00 5.03 R
6085 7359 0.108804 AATGTGAGACGGTAGCACGG 60.109 55.000 7.91 0.0 38.39 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.460857 AAATAGATGAGAGGTGACGGC 57.539 47.619 0.00 0.00 0.00 5.68
21 22 1.333177 ATAGATGAGAGGTGACGGCC 58.667 55.000 0.00 0.00 0.00 6.13
22 23 1.101635 TAGATGAGAGGTGACGGCCG 61.102 60.000 26.86 26.86 0.00 6.13
23 24 2.362503 ATGAGAGGTGACGGCCGA 60.363 61.111 35.90 7.50 0.00 5.54
24 25 1.739338 GATGAGAGGTGACGGCCGAT 61.739 60.000 35.90 16.95 0.00 4.18
25 26 1.330655 ATGAGAGGTGACGGCCGATT 61.331 55.000 35.90 11.07 0.00 3.34
26 27 1.519455 GAGAGGTGACGGCCGATTG 60.519 63.158 35.90 1.98 0.00 2.67
27 28 1.945354 GAGAGGTGACGGCCGATTGA 61.945 60.000 35.90 9.29 0.00 2.57
28 29 1.079405 GAGGTGACGGCCGATTGAA 60.079 57.895 35.90 9.14 0.00 2.69
29 30 1.359459 GAGGTGACGGCCGATTGAAC 61.359 60.000 35.90 20.31 0.00 3.18
30 31 1.669760 GGTGACGGCCGATTGAACA 60.670 57.895 35.90 17.56 0.00 3.18
31 32 1.231958 GGTGACGGCCGATTGAACAA 61.232 55.000 35.90 4.37 0.00 2.83
32 33 0.110373 GTGACGGCCGATTGAACAAC 60.110 55.000 35.90 13.21 0.00 3.32
33 34 0.533085 TGACGGCCGATTGAACAACA 60.533 50.000 35.90 13.41 0.00 3.33
34 35 0.110373 GACGGCCGATTGAACAACAC 60.110 55.000 35.90 4.01 0.00 3.32
35 36 0.816018 ACGGCCGATTGAACAACACA 60.816 50.000 35.90 0.00 0.00 3.72
36 37 0.385473 CGGCCGATTGAACAACACAC 60.385 55.000 24.07 0.00 0.00 3.82
37 38 0.665835 GGCCGATTGAACAACACACA 59.334 50.000 0.00 0.00 0.00 3.72
38 39 1.066303 GGCCGATTGAACAACACACAA 59.934 47.619 0.00 0.00 0.00 3.33
39 40 2.288152 GGCCGATTGAACAACACACAAT 60.288 45.455 0.00 0.00 37.03 2.71
40 41 2.979813 GCCGATTGAACAACACACAATC 59.020 45.455 0.00 0.00 43.33 2.67
44 45 5.789774 GATTGAACAACACACAATCGAAC 57.210 39.130 0.00 0.00 39.84 3.95
45 46 4.686839 TTGAACAACACACAATCGAACA 57.313 36.364 0.00 0.00 0.00 3.18
46 47 4.891627 TGAACAACACACAATCGAACAT 57.108 36.364 0.00 0.00 0.00 2.71
47 48 5.993106 TGAACAACACACAATCGAACATA 57.007 34.783 0.00 0.00 0.00 2.29
48 49 6.552859 TGAACAACACACAATCGAACATAT 57.447 33.333 0.00 0.00 0.00 1.78
49 50 6.598525 TGAACAACACACAATCGAACATATC 58.401 36.000 0.00 0.00 0.00 1.63
50 51 6.203723 TGAACAACACACAATCGAACATATCA 59.796 34.615 0.00 0.00 0.00 2.15
51 52 6.552859 ACAACACACAATCGAACATATCAA 57.447 33.333 0.00 0.00 0.00 2.57
52 53 7.144722 ACAACACACAATCGAACATATCAAT 57.855 32.000 0.00 0.00 0.00 2.57
53 54 7.243487 ACAACACACAATCGAACATATCAATC 58.757 34.615 0.00 0.00 0.00 2.67
54 55 7.119699 ACAACACACAATCGAACATATCAATCT 59.880 33.333 0.00 0.00 0.00 2.40
55 56 8.603181 CAACACACAATCGAACATATCAATCTA 58.397 33.333 0.00 0.00 0.00 1.98
56 57 8.893219 ACACACAATCGAACATATCAATCTAT 57.107 30.769 0.00 0.00 0.00 1.98
57 58 8.982685 ACACACAATCGAACATATCAATCTATC 58.017 33.333 0.00 0.00 0.00 2.08
58 59 8.981647 CACACAATCGAACATATCAATCTATCA 58.018 33.333 0.00 0.00 0.00 2.15
59 60 9.716531 ACACAATCGAACATATCAATCTATCAT 57.283 29.630 0.00 0.00 0.00 2.45
82 83 9.901172 TCATCTTTTACCTTTACCTTTATCTCC 57.099 33.333 0.00 0.00 0.00 3.71
83 84 9.121658 CATCTTTTACCTTTACCTTTATCTCCC 57.878 37.037 0.00 0.00 0.00 4.30
84 85 8.458951 TCTTTTACCTTTACCTTTATCTCCCT 57.541 34.615 0.00 0.00 0.00 4.20
85 86 8.546322 TCTTTTACCTTTACCTTTATCTCCCTC 58.454 37.037 0.00 0.00 0.00 4.30
86 87 6.819947 TTACCTTTACCTTTATCTCCCTCC 57.180 41.667 0.00 0.00 0.00 4.30
87 88 4.045736 ACCTTTACCTTTATCTCCCTCCC 58.954 47.826 0.00 0.00 0.00 4.30
88 89 4.265817 ACCTTTACCTTTATCTCCCTCCCT 60.266 45.833 0.00 0.00 0.00 4.20
89 90 4.727332 CCTTTACCTTTATCTCCCTCCCTT 59.273 45.833 0.00 0.00 0.00 3.95
90 91 5.398012 CCTTTACCTTTATCTCCCTCCCTTG 60.398 48.000 0.00 0.00 0.00 3.61
91 92 3.222394 ACCTTTATCTCCCTCCCTTGT 57.778 47.619 0.00 0.00 0.00 3.16
92 93 3.542604 ACCTTTATCTCCCTCCCTTGTT 58.457 45.455 0.00 0.00 0.00 2.83
93 94 3.523972 ACCTTTATCTCCCTCCCTTGTTC 59.476 47.826 0.00 0.00 0.00 3.18
94 95 3.783082 CCTTTATCTCCCTCCCTTGTTCT 59.217 47.826 0.00 0.00 0.00 3.01
95 96 4.228438 CCTTTATCTCCCTCCCTTGTTCTT 59.772 45.833 0.00 0.00 0.00 2.52
96 97 5.432645 CTTTATCTCCCTCCCTTGTTCTTC 58.567 45.833 0.00 0.00 0.00 2.87
97 98 2.723530 TCTCCCTCCCTTGTTCTTCT 57.276 50.000 0.00 0.00 0.00 2.85
98 99 2.991580 TCTCCCTCCCTTGTTCTTCTT 58.008 47.619 0.00 0.00 0.00 2.52
99 100 3.327439 TCTCCCTCCCTTGTTCTTCTTT 58.673 45.455 0.00 0.00 0.00 2.52
100 101 3.722101 TCTCCCTCCCTTGTTCTTCTTTT 59.278 43.478 0.00 0.00 0.00 2.27
101 102 4.168088 TCTCCCTCCCTTGTTCTTCTTTTT 59.832 41.667 0.00 0.00 0.00 1.94
102 103 4.470602 TCCCTCCCTTGTTCTTCTTTTTC 58.529 43.478 0.00 0.00 0.00 2.29
103 104 3.574396 CCCTCCCTTGTTCTTCTTTTTCC 59.426 47.826 0.00 0.00 0.00 3.13
104 105 4.474394 CCTCCCTTGTTCTTCTTTTTCCT 58.526 43.478 0.00 0.00 0.00 3.36
105 106 4.520874 CCTCCCTTGTTCTTCTTTTTCCTC 59.479 45.833 0.00 0.00 0.00 3.71
106 107 4.134563 TCCCTTGTTCTTCTTTTTCCTCG 58.865 43.478 0.00 0.00 0.00 4.63
107 108 3.883489 CCCTTGTTCTTCTTTTTCCTCGT 59.117 43.478 0.00 0.00 0.00 4.18
108 109 4.338400 CCCTTGTTCTTCTTTTTCCTCGTT 59.662 41.667 0.00 0.00 0.00 3.85
109 110 5.505819 CCCTTGTTCTTCTTTTTCCTCGTTC 60.506 44.000 0.00 0.00 0.00 3.95
110 111 5.297029 CCTTGTTCTTCTTTTTCCTCGTTCT 59.703 40.000 0.00 0.00 0.00 3.01
111 112 6.183360 CCTTGTTCTTCTTTTTCCTCGTTCTT 60.183 38.462 0.00 0.00 0.00 2.52
112 113 6.359480 TGTTCTTCTTTTTCCTCGTTCTTC 57.641 37.500 0.00 0.00 0.00 2.87
113 114 5.006358 TGTTCTTCTTTTTCCTCGTTCTTCG 59.994 40.000 0.00 0.00 41.41 3.79
114 115 4.690122 TCTTCTTTTTCCTCGTTCTTCGT 58.310 39.130 0.00 0.00 40.80 3.85
115 116 5.114081 TCTTCTTTTTCCTCGTTCTTCGTT 58.886 37.500 0.00 0.00 40.80 3.85
116 117 5.233689 TCTTCTTTTTCCTCGTTCTTCGTTC 59.766 40.000 0.00 0.00 40.80 3.95
117 118 3.488310 TCTTTTTCCTCGTTCTTCGTTCG 59.512 43.478 0.00 0.00 40.80 3.95
118 119 2.497107 TTTCCTCGTTCTTCGTTCGT 57.503 45.000 0.00 0.00 40.80 3.85
119 120 2.497107 TTCCTCGTTCTTCGTTCGTT 57.503 45.000 0.00 0.00 40.80 3.85
120 121 2.042104 TCCTCGTTCTTCGTTCGTTC 57.958 50.000 0.00 0.00 40.80 3.95
121 122 1.605710 TCCTCGTTCTTCGTTCGTTCT 59.394 47.619 0.00 0.00 40.80 3.01
122 123 2.033801 TCCTCGTTCTTCGTTCGTTCTT 59.966 45.455 0.00 0.00 40.80 2.52
123 124 2.404361 CCTCGTTCTTCGTTCGTTCTTC 59.596 50.000 0.00 0.00 40.80 2.87
124 125 3.298317 CTCGTTCTTCGTTCGTTCTTCT 58.702 45.455 0.00 0.00 40.80 2.85
125 126 3.699067 TCGTTCTTCGTTCGTTCTTCTT 58.301 40.909 0.00 0.00 40.80 2.52
126 127 3.484649 TCGTTCTTCGTTCGTTCTTCTTG 59.515 43.478 0.00 0.00 40.80 3.02
127 128 3.242248 CGTTCTTCGTTCGTTCTTCTTGT 59.758 43.478 0.00 0.00 34.52 3.16
128 129 4.259690 CGTTCTTCGTTCGTTCTTCTTGTT 60.260 41.667 0.00 0.00 34.52 2.83
129 130 4.772046 TCTTCGTTCGTTCTTCTTGTTG 57.228 40.909 0.00 0.00 0.00 3.33
130 131 4.178540 TCTTCGTTCGTTCTTCTTGTTGT 58.821 39.130 0.00 0.00 0.00 3.32
131 132 5.342433 TCTTCGTTCGTTCTTCTTGTTGTA 58.658 37.500 0.00 0.00 0.00 2.41
132 133 5.457799 TCTTCGTTCGTTCTTCTTGTTGTAG 59.542 40.000 0.00 0.00 0.00 2.74
133 134 4.046462 TCGTTCGTTCTTCTTGTTGTAGG 58.954 43.478 0.00 0.00 0.00 3.18
134 135 3.183775 CGTTCGTTCTTCTTGTTGTAGGG 59.816 47.826 0.00 0.00 0.00 3.53
135 136 2.762745 TCGTTCTTCTTGTTGTAGGGC 58.237 47.619 0.00 0.00 0.00 5.19
136 137 1.459592 CGTTCTTCTTGTTGTAGGGCG 59.540 52.381 0.00 0.00 0.00 6.13
137 138 2.762745 GTTCTTCTTGTTGTAGGGCGA 58.237 47.619 0.00 0.00 0.00 5.54
138 139 2.450609 TCTTCTTGTTGTAGGGCGAC 57.549 50.000 0.00 0.00 0.00 5.19
139 140 1.068474 CTTCTTGTTGTAGGGCGACG 58.932 55.000 0.00 0.00 34.15 5.12
140 141 0.675083 TTCTTGTTGTAGGGCGACGA 59.325 50.000 0.00 0.00 34.15 4.20
141 142 0.675083 TCTTGTTGTAGGGCGACGAA 59.325 50.000 0.00 0.00 34.15 3.85
142 143 0.788391 CTTGTTGTAGGGCGACGAAC 59.212 55.000 0.00 0.00 34.15 3.95
143 144 0.600782 TTGTTGTAGGGCGACGAACC 60.601 55.000 0.00 0.00 34.15 3.62
144 145 1.291272 GTTGTAGGGCGACGAACCT 59.709 57.895 14.67 14.67 40.89 3.50
145 146 0.735287 GTTGTAGGGCGACGAACCTC 60.735 60.000 13.84 7.76 38.30 3.85
146 147 2.101770 GTAGGGCGACGAACCTCG 59.898 66.667 13.84 0.00 46.93 4.63
147 148 2.046023 TAGGGCGACGAACCTCGA 60.046 61.111 13.84 0.00 43.74 4.04
148 149 2.110967 TAGGGCGACGAACCTCGAG 61.111 63.158 13.84 5.13 43.74 4.04
149 150 4.493747 GGGCGACGAACCTCGAGG 62.494 72.222 30.11 30.11 43.74 4.63
150 151 3.437795 GGCGACGAACCTCGAGGA 61.438 66.667 37.69 0.00 43.74 3.71
151 152 2.202453 GCGACGAACCTCGAGGAC 60.202 66.667 37.69 26.40 43.74 3.85
152 153 2.484203 CGACGAACCTCGAGGACC 59.516 66.667 37.69 24.66 43.74 4.46
153 154 2.039405 CGACGAACCTCGAGGACCT 61.039 63.158 37.69 20.62 43.74 3.85
154 155 0.742281 CGACGAACCTCGAGGACCTA 60.742 60.000 37.69 0.00 43.74 3.08
155 156 1.015868 GACGAACCTCGAGGACCTAG 58.984 60.000 37.69 23.02 43.74 3.02
156 157 0.394080 ACGAACCTCGAGGACCTAGG 60.394 60.000 37.69 20.24 43.74 3.02
157 158 1.102222 CGAACCTCGAGGACCTAGGG 61.102 65.000 37.69 14.50 43.74 3.53
158 159 0.756070 GAACCTCGAGGACCTAGGGG 60.756 65.000 37.69 18.54 38.94 4.79
159 160 2.522193 CCTCGAGGACCTAGGGGC 60.522 72.222 28.21 4.41 37.39 5.80
160 161 2.907917 CTCGAGGACCTAGGGGCG 60.908 72.222 14.81 10.78 35.63 6.13
161 162 3.414193 TCGAGGACCTAGGGGCGA 61.414 66.667 14.81 12.95 35.63 5.54
162 163 2.203509 CGAGGACCTAGGGGCGAT 60.204 66.667 14.81 0.00 35.63 4.58
163 164 2.269529 CGAGGACCTAGGGGCGATC 61.270 68.421 14.81 0.18 35.63 3.69
164 165 1.152525 GAGGACCTAGGGGCGATCA 60.153 63.158 14.81 0.00 35.63 2.92
165 166 1.152440 AGGACCTAGGGGCGATCAG 60.152 63.158 14.81 0.00 35.63 2.90
166 167 2.210711 GGACCTAGGGGCGATCAGG 61.211 68.421 14.81 0.00 35.63 3.86
167 168 1.457831 GACCTAGGGGCGATCAGGT 60.458 63.158 14.81 0.00 44.11 4.00
168 169 1.457831 ACCTAGGGGCGATCAGGTC 60.458 63.158 14.81 0.00 36.69 3.85
179 180 2.054232 GATCAGGTCGACCTAGGACA 57.946 55.000 35.80 17.65 46.65 4.02
180 181 1.950909 GATCAGGTCGACCTAGGACAG 59.049 57.143 35.80 22.25 46.65 3.51
181 182 0.680280 TCAGGTCGACCTAGGACAGC 60.680 60.000 35.80 9.91 46.65 4.40
182 183 1.380112 AGGTCGACCTAGGACAGCC 60.380 63.158 35.59 13.81 46.48 4.85
183 184 2.424733 GGTCGACCTAGGACAGCCC 61.425 68.421 27.64 5.44 36.12 5.19
184 185 1.681327 GTCGACCTAGGACAGCCCA 60.681 63.158 17.98 0.00 37.41 5.36
185 186 1.043673 GTCGACCTAGGACAGCCCAT 61.044 60.000 17.98 0.00 37.41 4.00
186 187 0.554305 TCGACCTAGGACAGCCCATA 59.446 55.000 17.98 0.00 37.41 2.74
187 188 0.962489 CGACCTAGGACAGCCCATAG 59.038 60.000 17.98 0.00 37.41 2.23
188 189 0.682292 GACCTAGGACAGCCCATAGC 59.318 60.000 17.98 0.00 44.25 2.97
200 201 4.647615 CATAGCTACCGCGCGCCT 62.648 66.667 27.36 18.67 42.32 5.52
201 202 3.912907 ATAGCTACCGCGCGCCTT 61.913 61.111 27.36 15.36 42.32 4.35
202 203 4.865761 TAGCTACCGCGCGCCTTG 62.866 66.667 27.36 16.92 42.32 3.61
213 214 3.382832 CGCCTTGACGGGGTCTCT 61.383 66.667 0.00 0.00 40.68 3.10
214 215 2.579738 GCCTTGACGGGGTCTCTC 59.420 66.667 0.00 0.00 33.15 3.20
215 216 3.020237 GCCTTGACGGGGTCTCTCC 62.020 68.421 0.00 0.00 33.15 3.71
239 240 3.633116 CGTGGGGTTTCGGGTCCT 61.633 66.667 0.00 0.00 0.00 3.85
240 241 2.841317 GTGGGGTTTCGGGTCCTT 59.159 61.111 0.00 0.00 0.00 3.36
241 242 1.829523 CGTGGGGTTTCGGGTCCTTA 61.830 60.000 0.00 0.00 0.00 2.69
242 243 0.401356 GTGGGGTTTCGGGTCCTTAA 59.599 55.000 0.00 0.00 0.00 1.85
243 244 1.147333 TGGGGTTTCGGGTCCTTAAA 58.853 50.000 0.00 0.00 0.00 1.52
244 245 1.498145 TGGGGTTTCGGGTCCTTAAAA 59.502 47.619 0.00 0.00 0.00 1.52
245 246 2.165167 GGGGTTTCGGGTCCTTAAAAG 58.835 52.381 0.00 0.00 0.00 2.27
246 247 1.542915 GGGTTTCGGGTCCTTAAAAGC 59.457 52.381 0.00 0.00 0.00 3.51
247 248 2.511659 GGTTTCGGGTCCTTAAAAGCT 58.488 47.619 0.00 0.00 0.00 3.74
248 249 2.486982 GGTTTCGGGTCCTTAAAAGCTC 59.513 50.000 0.00 0.00 0.00 4.09
249 250 2.484742 TTCGGGTCCTTAAAAGCTCC 57.515 50.000 0.00 0.00 0.00 4.70
250 251 0.616891 TCGGGTCCTTAAAAGCTCCC 59.383 55.000 0.00 9.15 35.51 4.30
251 252 0.743345 CGGGTCCTTAAAAGCTCCCG 60.743 60.000 20.11 20.11 46.03 5.14
252 253 1.030488 GGGTCCTTAAAAGCTCCCGC 61.030 60.000 0.00 0.00 31.46 6.13
253 254 1.030488 GGTCCTTAAAAGCTCCCGCC 61.030 60.000 0.00 0.00 36.60 6.13
254 255 1.078708 TCCTTAAAAGCTCCCGCCG 60.079 57.895 0.00 0.00 36.60 6.46
255 256 2.112815 CCTTAAAAGCTCCCGCCGG 61.113 63.158 0.00 0.00 36.60 6.13
256 257 1.078708 CTTAAAAGCTCCCGCCGGA 60.079 57.895 5.05 0.00 36.60 5.14
257 258 0.463833 CTTAAAAGCTCCCGCCGGAT 60.464 55.000 5.05 0.00 37.60 4.18
258 259 0.034863 TTAAAAGCTCCCGCCGGATT 60.035 50.000 5.05 0.00 37.60 3.01
259 260 0.746563 TAAAAGCTCCCGCCGGATTG 60.747 55.000 5.05 0.00 37.60 2.67
263 264 3.204827 CTCCCGCCGGATTGCTTG 61.205 66.667 5.05 0.00 37.60 4.01
267 268 3.192230 CGCCGGATTGCTTGCGTA 61.192 61.111 5.05 0.00 41.95 4.42
268 269 2.403586 GCCGGATTGCTTGCGTAC 59.596 61.111 5.05 0.00 37.49 3.67
269 270 3.098555 CCGGATTGCTTGCGTACC 58.901 61.111 0.00 0.00 37.49 3.34
270 271 2.701006 CGGATTGCTTGCGTACCG 59.299 61.111 0.00 0.00 34.02 4.02
286 287 3.564027 CGCGCTTTCGGATGGGTC 61.564 66.667 5.56 0.00 35.95 4.46
287 288 2.125106 GCGCTTTCGGATGGGTCT 60.125 61.111 0.00 0.00 35.95 3.85
288 289 2.174319 GCGCTTTCGGATGGGTCTC 61.174 63.158 0.00 0.00 35.95 3.36
289 290 1.521681 CGCTTTCGGATGGGTCTCC 60.522 63.158 0.00 0.00 0.00 3.71
290 291 1.908483 GCTTTCGGATGGGTCTCCT 59.092 57.895 0.00 0.00 32.77 3.69
291 292 0.253327 GCTTTCGGATGGGTCTCCTT 59.747 55.000 0.00 0.00 32.77 3.36
292 293 1.340114 GCTTTCGGATGGGTCTCCTTT 60.340 52.381 0.00 0.00 32.77 3.11
293 294 2.359900 CTTTCGGATGGGTCTCCTTTG 58.640 52.381 0.00 0.00 32.77 2.77
294 295 1.651737 TTCGGATGGGTCTCCTTTGA 58.348 50.000 0.00 0.00 32.77 2.69
295 296 0.902531 TCGGATGGGTCTCCTTTGAC 59.097 55.000 0.00 0.00 36.31 3.18
296 297 0.460284 CGGATGGGTCTCCTTTGACG 60.460 60.000 0.00 0.00 37.81 4.35
297 298 0.613777 GGATGGGTCTCCTTTGACGT 59.386 55.000 0.00 0.00 37.81 4.34
298 299 1.676014 GGATGGGTCTCCTTTGACGTG 60.676 57.143 0.00 0.00 37.81 4.49
299 300 1.275291 GATGGGTCTCCTTTGACGTGA 59.725 52.381 0.00 0.00 37.81 4.35
300 301 0.679505 TGGGTCTCCTTTGACGTGAG 59.320 55.000 0.00 0.00 37.81 3.51
301 302 0.670854 GGGTCTCCTTTGACGTGAGC 60.671 60.000 0.00 0.00 37.81 4.26
302 303 0.318762 GGTCTCCTTTGACGTGAGCT 59.681 55.000 0.00 0.00 37.81 4.09
303 304 1.423395 GTCTCCTTTGACGTGAGCTG 58.577 55.000 0.00 0.00 0.00 4.24
304 305 0.319900 TCTCCTTTGACGTGAGCTGC 60.320 55.000 0.00 0.00 0.00 5.25
305 306 1.621301 CTCCTTTGACGTGAGCTGCG 61.621 60.000 0.00 0.00 0.00 5.18
306 307 2.671177 CCTTTGACGTGAGCTGCGG 61.671 63.158 11.28 0.00 0.00 5.69
307 308 1.956170 CTTTGACGTGAGCTGCGGT 60.956 57.895 11.28 0.00 0.00 5.68
308 309 2.162921 CTTTGACGTGAGCTGCGGTG 62.163 60.000 11.28 0.00 0.00 4.94
311 312 4.687215 ACGTGAGCTGCGGTGCAT 62.687 61.111 11.28 0.00 38.13 3.96
312 313 3.857854 CGTGAGCTGCGGTGCATC 61.858 66.667 0.00 0.00 38.13 3.91
313 314 2.743538 GTGAGCTGCGGTGCATCA 60.744 61.111 0.00 0.00 38.13 3.07
314 315 2.743538 TGAGCTGCGGTGCATCAC 60.744 61.111 0.00 0.00 38.13 3.06
323 324 4.760047 GTGCATCACCCTCGGCGT 62.760 66.667 6.85 0.00 0.00 5.68
324 325 4.015406 TGCATCACCCTCGGCGTT 62.015 61.111 6.85 0.00 0.00 4.84
325 326 3.499737 GCATCACCCTCGGCGTTG 61.500 66.667 6.85 0.75 0.00 4.10
326 327 2.819595 CATCACCCTCGGCGTTGG 60.820 66.667 6.85 11.41 0.00 3.77
327 328 3.000819 ATCACCCTCGGCGTTGGA 61.001 61.111 20.85 7.93 0.00 3.53
328 329 3.019003 ATCACCCTCGGCGTTGGAG 62.019 63.158 20.85 14.38 0.00 3.86
329 330 3.691342 CACCCTCGGCGTTGGAGA 61.691 66.667 20.85 0.00 33.27 3.71
330 331 2.683933 ACCCTCGGCGTTGGAGAT 60.684 61.111 20.85 6.03 33.27 2.75
331 332 1.380785 ACCCTCGGCGTTGGAGATA 60.381 57.895 20.85 0.00 33.27 1.98
332 333 1.067582 CCCTCGGCGTTGGAGATAC 59.932 63.158 19.54 0.00 33.27 2.24
333 334 1.672854 CCCTCGGCGTTGGAGATACA 61.673 60.000 19.54 0.00 33.27 2.29
334 335 0.527817 CCTCGGCGTTGGAGATACAC 60.528 60.000 6.85 0.00 33.27 2.90
335 336 0.866061 CTCGGCGTTGGAGATACACG 60.866 60.000 6.85 0.00 33.27 4.49
336 337 1.876714 CGGCGTTGGAGATACACGG 60.877 63.158 0.00 0.00 0.00 4.94
337 338 1.217244 GGCGTTGGAGATACACGGT 59.783 57.895 0.00 0.00 0.00 4.83
338 339 0.457035 GGCGTTGGAGATACACGGTA 59.543 55.000 0.00 0.00 0.00 4.02
339 340 1.135024 GGCGTTGGAGATACACGGTAA 60.135 52.381 0.00 0.00 0.00 2.85
340 341 1.922545 GCGTTGGAGATACACGGTAAC 59.077 52.381 0.00 0.00 0.00 2.50
357 358 2.430075 CGTGTCCGTGTGCGATCA 60.430 61.111 0.00 0.00 41.33 2.92
358 359 2.019408 CGTGTCCGTGTGCGATCAA 61.019 57.895 0.00 0.00 41.33 2.57
362 363 1.375396 TCCGTGTGCGATCAAAGGG 60.375 57.895 0.00 0.00 41.33 3.95
381 382 3.814268 CCAGCCGGAACCGCATTG 61.814 66.667 5.05 5.51 38.24 2.82
401 402 6.627243 CATTGATCTGATTTGGAAGCAAAGA 58.373 36.000 0.00 0.00 0.00 2.52
522 523 2.760385 GGTCCTCCTCCACCTCCG 60.760 72.222 0.00 0.00 0.00 4.63
524 525 4.779733 TCCTCCTCCACCTCCGCC 62.780 72.222 0.00 0.00 0.00 6.13
529 530 3.465403 CTCCACCTCCGCCTCCAG 61.465 72.222 0.00 0.00 0.00 3.86
538 541 2.359975 CGCCTCCAGTCCCCAAAC 60.360 66.667 0.00 0.00 0.00 2.93
651 672 2.166664 CTCTCCCTCTCCGAACGAAAAT 59.833 50.000 0.00 0.00 0.00 1.82
664 685 1.076332 CGAAAATGGAGGTGGTCGTC 58.924 55.000 0.00 0.00 0.00 4.20
665 686 1.337823 CGAAAATGGAGGTGGTCGTCT 60.338 52.381 0.00 0.00 0.00 4.18
666 687 2.347731 GAAAATGGAGGTGGTCGTCTC 58.652 52.381 0.00 0.00 0.00 3.36
667 688 0.246635 AAATGGAGGTGGTCGTCTCG 59.753 55.000 0.00 0.00 0.00 4.04
668 689 0.898789 AATGGAGGTGGTCGTCTCGT 60.899 55.000 0.00 0.00 0.00 4.18
685 706 4.323477 TCGTCCACCTTTGCCGGG 62.323 66.667 2.18 0.00 0.00 5.73
764 793 2.525629 TCCGGGGAGCACTGTGAA 60.526 61.111 12.86 0.00 0.00 3.18
788 817 1.852309 TCACATGGGATGGGCTTGTAT 59.148 47.619 0.00 0.00 32.41 2.29
872 926 4.168291 CCCCTTCTCGCCTCCAGC 62.168 72.222 0.00 0.00 38.52 4.85
945 999 3.610669 CCCTCCCTCCATCGCTCG 61.611 72.222 0.00 0.00 0.00 5.03
946 1000 4.292178 CCTCCCTCCATCGCTCGC 62.292 72.222 0.00 0.00 0.00 5.03
947 1001 3.222855 CTCCCTCCATCGCTCGCT 61.223 66.667 0.00 0.00 0.00 4.93
948 1002 3.206211 CTCCCTCCATCGCTCGCTC 62.206 68.421 0.00 0.00 0.00 5.03
1032 1098 1.539065 CGCTCAGTTCAGTTCACCACT 60.539 52.381 0.00 0.00 35.35 4.00
1186 1252 1.871676 AGCGGACCGTTTTCTTTCTTC 59.128 47.619 16.73 0.00 0.00 2.87
1191 1257 4.554134 CGGACCGTTTTCTTTCTTCCTTTC 60.554 45.833 5.48 0.00 0.00 2.62
1192 1258 4.579340 GGACCGTTTTCTTTCTTCCTTTCT 59.421 41.667 0.00 0.00 0.00 2.52
1195 1261 6.561614 ACCGTTTTCTTTCTTCCTTTCTTTC 58.438 36.000 0.00 0.00 0.00 2.62
1197 1263 7.093902 ACCGTTTTCTTTCTTCCTTTCTTTCTT 60.094 33.333 0.00 0.00 0.00 2.52
1198 1264 7.759886 CCGTTTTCTTTCTTCCTTTCTTTCTTT 59.240 33.333 0.00 0.00 0.00 2.52
1199 1265 8.799091 CGTTTTCTTTCTTCCTTTCTTTCTTTC 58.201 33.333 0.00 0.00 0.00 2.62
1200 1266 9.862371 GTTTTCTTTCTTCCTTTCTTTCTTTCT 57.138 29.630 0.00 0.00 0.00 2.52
1267 1334 1.619669 AGGGCGGGGATTCTTTCCT 60.620 57.895 0.00 0.00 44.75 3.36
1268 1335 1.214992 AGGGCGGGGATTCTTTCCTT 61.215 55.000 0.00 0.00 44.75 3.36
1269 1336 0.752009 GGGCGGGGATTCTTTCCTTC 60.752 60.000 0.00 0.00 44.75 3.46
1270 1337 0.752009 GGCGGGGATTCTTTCCTTCC 60.752 60.000 0.00 0.00 44.75 3.46
1271 1338 0.034477 GCGGGGATTCTTTCCTTCCA 60.034 55.000 0.00 0.00 44.75 3.53
1272 1339 2.019156 GCGGGGATTCTTTCCTTCCAG 61.019 57.143 0.00 0.00 44.75 3.86
1273 1340 1.282157 CGGGGATTCTTTCCTTCCAGT 59.718 52.381 0.00 0.00 44.75 4.00
1274 1341 2.290960 CGGGGATTCTTTCCTTCCAGTT 60.291 50.000 0.00 0.00 44.75 3.16
1275 1342 3.092301 GGGGATTCTTTCCTTCCAGTTG 58.908 50.000 0.00 0.00 44.75 3.16
1276 1343 3.500471 GGGGATTCTTTCCTTCCAGTTGT 60.500 47.826 0.00 0.00 44.75 3.32
1277 1344 4.152647 GGGATTCTTTCCTTCCAGTTGTT 58.847 43.478 0.00 0.00 44.75 2.83
1278 1345 4.588951 GGGATTCTTTCCTTCCAGTTGTTT 59.411 41.667 0.00 0.00 44.75 2.83
1279 1346 5.509670 GGGATTCTTTCCTTCCAGTTGTTTG 60.510 44.000 0.00 0.00 44.75 2.93
1280 1347 5.509670 GGATTCTTTCCTTCCAGTTGTTTGG 60.510 44.000 0.00 0.00 41.78 3.28
1281 1348 3.295973 TCTTTCCTTCCAGTTGTTTGGG 58.704 45.455 0.00 0.00 38.81 4.12
1282 1349 1.408969 TTCCTTCCAGTTGTTTGGGC 58.591 50.000 0.00 0.00 38.81 5.36
1283 1350 0.821711 TCCTTCCAGTTGTTTGGGCG 60.822 55.000 0.00 0.00 38.81 6.13
1284 1351 1.007387 CTTCCAGTTGTTTGGGCGC 60.007 57.895 0.00 0.00 38.81 6.53
1285 1352 1.733402 CTTCCAGTTGTTTGGGCGCA 61.733 55.000 10.83 0.00 38.81 6.09
1286 1353 1.733402 TTCCAGTTGTTTGGGCGCAG 61.733 55.000 10.83 0.00 38.81 5.18
1350 1424 3.964875 CGGCGGCTTGTGCTTTGT 61.965 61.111 7.61 0.00 39.59 2.83
1443 1517 3.179265 CGTGCCGACGGTGATCAC 61.179 66.667 17.91 17.91 42.18 3.06
1453 1527 2.471255 GGTGATCACCGGCTTTGAG 58.529 57.895 28.52 0.00 42.29 3.02
1699 1773 1.068250 GCTCAGGTAAGCCGGCTAG 59.932 63.158 33.07 23.23 40.50 3.42
1708 1782 1.237285 AAGCCGGCTAGCAACACTTG 61.237 55.000 33.07 0.00 34.23 3.16
1737 1833 1.862827 CAGCTGCCTTTCAAAAAGTGC 59.137 47.619 0.00 3.27 0.00 4.40
1740 1836 2.030823 GCTGCCTTTCAAAAAGTGCAAC 59.969 45.455 13.03 7.98 0.00 4.17
1748 1852 5.903764 TTCAAAAAGTGCAACATATGTGC 57.096 34.783 9.63 14.93 41.43 4.57
1752 1856 4.701956 AAAGTGCAACATATGTGCTACC 57.298 40.909 22.31 14.20 41.43 3.18
1800 1904 1.139816 CGCTGCATTGCATTGCTCTG 61.140 55.000 28.14 20.04 43.18 3.35
1802 1906 0.530744 CTGCATTGCATTGCTCTGGT 59.469 50.000 28.14 0.00 43.18 4.00
1825 1929 5.298197 TGATCTTCGAGTGACTGTTACTC 57.702 43.478 19.47 19.47 40.83 2.59
1840 1944 7.173562 TGACTGTTACTCTAGTCTGAACTTCTC 59.826 40.741 0.00 0.00 42.86 2.87
1858 1962 7.986085 ACTTCTCATACATGCTTGTTTTAGT 57.014 32.000 10.85 4.24 37.28 2.24
2023 2132 8.454894 GGAAAAGAAAATCTAGTGTCATCTTCC 58.545 37.037 0.00 0.00 0.00 3.46
2030 2139 9.606631 AAAATCTAGTGTCATCTTCCTTGATAC 57.393 33.333 0.00 0.00 35.99 2.24
2043 2152 5.089970 TCCTTGATACTTGTCCATGACAG 57.910 43.478 0.00 0.00 43.69 3.51
2104 2213 3.443045 GGGAAGCGTGCCATGTGG 61.443 66.667 5.07 0.00 34.72 4.17
2109 2218 1.742831 GAAGCGTGCCATGTGGAAATA 59.257 47.619 2.55 0.00 37.39 1.40
2119 2228 5.597594 TGCCATGTGGAAATAATTGCTATGA 59.402 36.000 2.55 0.00 37.39 2.15
2178 2476 1.361197 TGTAGGTGGGATCCTGTCAGA 59.639 52.381 12.58 0.00 38.41 3.27
2182 2480 3.041946 AGGTGGGATCCTGTCAGATTAC 58.958 50.000 12.58 0.00 36.35 1.89
2185 2483 3.452627 GTGGGATCCTGTCAGATTACTGT 59.547 47.826 12.58 0.00 43.81 3.55
2209 2507 3.135225 TGGGCATTCCGTCATTTATACG 58.865 45.455 0.00 0.00 40.01 3.06
2332 2631 9.816354 AATATAATAAAACTTGTGTGGGAATGC 57.184 29.630 0.00 0.00 0.00 3.56
2493 2792 1.151810 ATGGGGCTGGGGTCGATAT 60.152 57.895 0.00 0.00 0.00 1.63
2604 2903 6.000840 TGCTTAACATTTACATCCACAGACA 58.999 36.000 0.00 0.00 0.00 3.41
2678 2981 7.935755 CCATTTCCATCTATATCTGTGTTCTGT 59.064 37.037 0.00 0.00 0.00 3.41
2762 3065 8.098912 TGATGAATATGATGGACCAGTATTCAG 58.901 37.037 26.73 0.00 41.98 3.02
2837 3140 9.838339 ATGCTTCATAGTTAAATAGCTAACACT 57.162 29.630 0.00 0.22 34.75 3.55
2838 3141 9.667107 TGCTTCATAGTTAAATAGCTAACACTT 57.333 29.630 0.00 0.00 34.75 3.16
2937 3245 0.768221 TAGCCATCCCCATCCAGTCC 60.768 60.000 0.00 0.00 0.00 3.85
2944 3253 1.513991 TCCCCATCCAGTCCTCCATAT 59.486 52.381 0.00 0.00 0.00 1.78
2995 3304 4.948341 TTTTTGGAAAAGGAGGCTTACC 57.052 40.909 0.00 0.00 0.00 2.85
2996 3305 2.597578 TTGGAAAAGGAGGCTTACCC 57.402 50.000 0.00 0.00 36.11 3.69
2997 3306 0.702316 TGGAAAAGGAGGCTTACCCC 59.298 55.000 0.00 0.00 36.11 4.95
2998 3307 0.033405 GGAAAAGGAGGCTTACCCCC 60.033 60.000 0.00 0.00 36.11 5.40
2999 3308 0.393944 GAAAAGGAGGCTTACCCCCG 60.394 60.000 0.00 0.00 36.11 5.73
3000 3309 1.859841 AAAAGGAGGCTTACCCCCGG 61.860 60.000 0.00 0.00 36.11 5.73
3006 3315 4.176752 GCTTACCCCCGGCCTCTG 62.177 72.222 0.00 0.00 0.00 3.35
3007 3316 4.176752 CTTACCCCCGGCCTCTGC 62.177 72.222 0.00 0.00 0.00 4.26
3009 3318 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
3014 3323 4.899239 CCGGCCTCTGCATCCGAC 62.899 72.222 15.42 0.00 45.53 4.79
3015 3324 3.842923 CGGCCTCTGCATCCGACT 61.843 66.667 0.00 0.00 45.53 4.18
3016 3325 2.586792 GGCCTCTGCATCCGACTT 59.413 61.111 0.00 0.00 40.13 3.01
3096 3406 4.083217 TGTCTCGTCTTCTTACTTGCTCTC 60.083 45.833 0.00 0.00 0.00 3.20
3122 3432 7.391148 TTGTTCTTATGCTTCCAGGTTTATC 57.609 36.000 0.00 0.00 0.00 1.75
3263 3575 1.375908 TCAGCTTGGTCATGGCGAC 60.376 57.895 0.00 0.00 44.57 5.19
3364 4174 4.829064 ACATTCTGTGTTACGCAATGTT 57.171 36.364 9.58 0.00 38.01 2.71
3387 4197 9.851686 TGTTTATGATTATATCTTCAGGCAAGT 57.148 29.630 0.00 0.00 33.27 3.16
3472 4282 3.686726 CCAAGCAACTCAGAACCTATCAC 59.313 47.826 0.00 0.00 0.00 3.06
3517 4328 1.275291 TCGGGCTGGACTAAAGTCTTG 59.725 52.381 9.84 4.74 44.20 3.02
3519 4330 1.351350 GGGCTGGACTAAAGTCTTGGT 59.649 52.381 9.84 0.00 44.20 3.67
3842 4659 4.665833 TGAATCTCTAATGTGGTACCCG 57.334 45.455 10.07 0.00 0.00 5.28
3853 4671 1.068585 GGTACCCGGCCGTAATCAG 59.931 63.158 26.12 7.18 0.00 2.90
3870 4688 8.341903 CCGTAATCAGTTTTGTATATGCATTGA 58.658 33.333 3.54 0.00 0.00 2.57
3929 4747 8.974060 AGATACCTCTACACAAAGAAAACAAA 57.026 30.769 0.00 0.00 0.00 2.83
4092 4910 4.365514 TGGCTTTGGTAGAATGTTGAGA 57.634 40.909 0.00 0.00 0.00 3.27
4093 4911 4.326826 TGGCTTTGGTAGAATGTTGAGAG 58.673 43.478 0.00 0.00 0.00 3.20
4122 4940 2.230508 TCATCCGATCGGGCTATACAAC 59.769 50.000 32.79 0.00 34.94 3.32
4173 4991 3.009916 AGCCAGAATGAATGGAGTTCTGT 59.990 43.478 11.88 0.00 44.50 3.41
4175 4993 3.620374 CCAGAATGAATGGAGTTCTGTCG 59.380 47.826 11.88 0.00 44.50 4.35
4209 5028 3.269381 TGAGCCCTTTCATTATCCCTGTT 59.731 43.478 0.00 0.00 0.00 3.16
4345 5165 4.929808 TGAATTCCGACTCTACTTTTCTGC 59.070 41.667 2.27 0.00 0.00 4.26
4379 5373 5.560722 ATGGTCGACATATTATGTTCCCA 57.439 39.130 18.91 17.85 45.03 4.37
4418 5412 3.153919 TGTCCAGGTGGTTTATCTTTGC 58.846 45.455 0.00 0.00 36.34 3.68
4474 5468 2.970974 GCAAGTTGGAGCTGGCGAC 61.971 63.158 4.75 0.00 0.00 5.19
4480 5474 2.437359 GGAGCTGGCGACAATGCT 60.437 61.111 4.40 4.40 43.77 3.79
4495 5489 0.994247 ATGCTGATCACTGTTCCCCA 59.006 50.000 0.00 0.00 0.00 4.96
4513 5507 2.896685 CCCAGCACAGGTTAATTTTCCA 59.103 45.455 0.00 0.00 0.00 3.53
4558 5552 3.824133 TGGGAGTGCTAAATGATCCATG 58.176 45.455 0.00 0.00 0.00 3.66
4827 5823 3.719871 TGAACTAGCCCTTGATCACCTA 58.280 45.455 0.00 0.00 0.00 3.08
4828 5824 4.101114 TGAACTAGCCCTTGATCACCTAA 58.899 43.478 0.00 0.00 0.00 2.69
4977 5980 0.539518 TACCAAATGCGCTCTAGCCA 59.460 50.000 9.73 0.00 37.91 4.75
4988 5991 3.142951 CGCTCTAGCCACAGATACTAGT 58.857 50.000 0.00 0.00 35.83 2.57
4992 5995 4.653868 TCTAGCCACAGATACTAGTAGGC 58.346 47.826 18.06 18.06 40.85 3.93
4995 5998 2.231529 CCACAGATACTAGTAGGCGCT 58.768 52.381 7.64 0.72 0.00 5.92
4997 6000 2.096169 CACAGATACTAGTAGGCGCTCG 60.096 54.545 7.64 1.01 0.00 5.03
5036 6039 7.739498 ACTAATGGTACTTCGTGATGTTTTT 57.261 32.000 0.00 0.00 0.00 1.94
5116 6360 2.036992 AGCTCATGCCTAGTAGACATGC 59.963 50.000 18.72 10.24 40.76 4.06
5129 6373 3.064900 AGACATGCAACCTCTTTCTCC 57.935 47.619 0.00 0.00 0.00 3.71
5190 6434 3.614616 GTCACTGAAGATTGATCCGTGTC 59.385 47.826 0.00 0.00 34.72 3.67
5191 6435 2.600420 CACTGAAGATTGATCCGTGTCG 59.400 50.000 0.00 0.00 30.32 4.35
5209 6454 3.270877 GTCGATCTGTAGGTTGCCAAAT 58.729 45.455 0.00 0.00 0.00 2.32
5432 6677 5.241662 CCAAAGTACTTTCCAGAAGAGGAG 58.758 45.833 18.00 2.79 39.25 3.69
5527 6780 3.117512 AGAATCAACCTGGACCTGTGTTT 60.118 43.478 0.00 0.00 0.00 2.83
5528 6781 2.051334 TCAACCTGGACCTGTGTTTG 57.949 50.000 0.00 0.00 0.00 2.93
5538 6791 3.383185 GGACCTGTGTTTGGAATGTTTCA 59.617 43.478 0.00 0.00 0.00 2.69
5586 6839 7.292713 TGGACGGTACAATCAATAAGCTATA 57.707 36.000 0.00 0.00 0.00 1.31
5599 6852 8.418597 TCAATAAGCTATACGTTCTTATCCCT 57.581 34.615 0.00 0.00 33.35 4.20
5600 6853 9.524496 TCAATAAGCTATACGTTCTTATCCCTA 57.476 33.333 0.00 0.00 33.35 3.53
5605 6858 9.708092 AAGCTATACGTTCTTATCCCTATTTTC 57.292 33.333 0.00 0.00 0.00 2.29
5606 6859 8.867097 AGCTATACGTTCTTATCCCTATTTTCA 58.133 33.333 0.00 0.00 0.00 2.69
5607 6860 9.141400 GCTATACGTTCTTATCCCTATTTTCAG 57.859 37.037 0.00 0.00 0.00 3.02
5642 6897 9.077885 AGCTCAATCTGGACTAAATTGTTTTTA 57.922 29.630 0.00 0.00 33.22 1.52
5770 7025 6.126409 TCAACTGTCTACACAATTCCCTTTT 58.874 36.000 0.00 0.00 29.82 2.27
5774 7029 4.825085 TGTCTACACAATTCCCTTTTGGAC 59.175 41.667 0.00 0.00 45.11 4.02
5788 7056 6.155737 TCCCTTTTGGACCACTTATACTAGAC 59.844 42.308 0.00 0.00 44.07 2.59
5814 7082 0.610232 ATGCTCTTTGTGGTGCCTCC 60.610 55.000 0.00 0.00 0.00 4.30
5850 7118 1.867166 TGTGAAACGCGTACCATTCA 58.133 45.000 14.46 16.44 42.39 2.57
5855 7123 4.327898 GTGAAACGCGTACCATTCATTCTA 59.672 41.667 22.60 5.94 34.62 2.10
5901 7172 1.382914 AGGATTACCCCTGCCTTTGT 58.617 50.000 0.00 0.00 34.68 2.83
5964 7236 7.817962 AGGTCAAACAAGTGTGTAGTATGATAC 59.182 37.037 0.00 0.00 36.80 2.24
6011 7285 2.576615 GGAGAACTCAAAGCCACAACT 58.423 47.619 4.23 0.00 0.00 3.16
6042 7316 8.713708 AACATAGAACTAGATGCCTATACACT 57.286 34.615 0.00 0.00 0.00 3.55
6049 7323 7.948034 ACTAGATGCCTATACACTTATCCTC 57.052 40.000 0.00 0.00 0.00 3.71
6072 7346 2.034999 GGACCGCCATCCAAACCA 59.965 61.111 0.00 0.00 38.77 3.67
6080 7354 2.514803 GCCATCCAAACCAGTTGTAGT 58.485 47.619 0.00 0.00 35.23 2.73
6085 7359 5.357032 CCATCCAAACCAGTTGTAGTTATCC 59.643 44.000 0.00 0.00 35.23 2.59
6118 7392 3.025978 CTCACATTGGTTGCACCCATAT 58.974 45.455 2.83 0.00 37.50 1.78
6160 7434 1.738030 GCACGGCTAAGTAACGACCAT 60.738 52.381 0.00 0.00 0.00 3.55
6262 7536 4.155709 TGACAGTTTCATATGGCCCAAAA 58.844 39.130 0.00 0.00 0.00 2.44
6282 7556 2.831685 TAATGCACACACTCCGAGTT 57.168 45.000 0.00 0.00 0.00 3.01
6294 7568 0.531974 TCCGAGTTGAATATGCGCCC 60.532 55.000 4.18 0.00 0.00 6.13
6303 7577 4.634012 TGAATATGCGCCCCTAACTTAT 57.366 40.909 4.18 0.00 0.00 1.73
6361 7643 6.664384 GGGTTTATGGTATCAGGTGGTAAAAA 59.336 38.462 0.00 0.00 0.00 1.94
6391 7673 1.196808 CAGTTCGCCGCAATAGTTTGT 59.803 47.619 0.00 0.00 35.17 2.83
6458 7789 3.119602 TCGCAGAAACATCGCTTACTACT 60.120 43.478 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.103263 GGCCGTCACCTCTCATCTATTT 59.897 50.000 0.00 0.00 0.00 1.40
1 2 1.689273 GGCCGTCACCTCTCATCTATT 59.311 52.381 0.00 0.00 0.00 1.73
2 3 1.333177 GGCCGTCACCTCTCATCTAT 58.667 55.000 0.00 0.00 0.00 1.98
3 4 1.101635 CGGCCGTCACCTCTCATCTA 61.102 60.000 19.50 0.00 0.00 1.98
4 5 2.418910 CGGCCGTCACCTCTCATCT 61.419 63.158 19.50 0.00 0.00 2.90
5 6 1.739338 ATCGGCCGTCACCTCTCATC 61.739 60.000 27.15 0.00 0.00 2.92
6 7 1.330655 AATCGGCCGTCACCTCTCAT 61.331 55.000 27.15 4.45 0.00 2.90
7 8 1.982395 AATCGGCCGTCACCTCTCA 60.982 57.895 27.15 1.58 0.00 3.27
8 9 1.519455 CAATCGGCCGTCACCTCTC 60.519 63.158 27.15 0.00 0.00 3.20
9 10 1.541310 TTCAATCGGCCGTCACCTCT 61.541 55.000 27.15 0.00 0.00 3.69
10 11 1.079405 TTCAATCGGCCGTCACCTC 60.079 57.895 27.15 0.00 0.00 3.85
11 12 1.375523 GTTCAATCGGCCGTCACCT 60.376 57.895 27.15 3.03 0.00 4.00
12 13 1.231958 TTGTTCAATCGGCCGTCACC 61.232 55.000 27.15 10.00 0.00 4.02
13 14 0.110373 GTTGTTCAATCGGCCGTCAC 60.110 55.000 27.15 15.41 0.00 3.67
14 15 0.533085 TGTTGTTCAATCGGCCGTCA 60.533 50.000 27.15 7.11 0.00 4.35
15 16 0.110373 GTGTTGTTCAATCGGCCGTC 60.110 55.000 27.15 10.22 0.00 4.79
16 17 0.816018 TGTGTTGTTCAATCGGCCGT 60.816 50.000 27.15 10.00 0.00 5.68
17 18 0.385473 GTGTGTTGTTCAATCGGCCG 60.385 55.000 22.12 22.12 0.00 6.13
18 19 0.665835 TGTGTGTTGTTCAATCGGCC 59.334 50.000 0.00 0.00 0.00 6.13
19 20 2.483583 TTGTGTGTTGTTCAATCGGC 57.516 45.000 0.00 0.00 0.00 5.54
22 23 5.270083 TGTTCGATTGTGTGTTGTTCAATC 58.730 37.500 0.00 0.00 41.96 2.67
23 24 5.242069 TGTTCGATTGTGTGTTGTTCAAT 57.758 34.783 0.00 0.00 35.00 2.57
24 25 4.686839 TGTTCGATTGTGTGTTGTTCAA 57.313 36.364 0.00 0.00 0.00 2.69
25 26 4.891627 ATGTTCGATTGTGTGTTGTTCA 57.108 36.364 0.00 0.00 0.00 3.18
26 27 6.598525 TGATATGTTCGATTGTGTGTTGTTC 58.401 36.000 0.00 0.00 0.00 3.18
27 28 6.552859 TGATATGTTCGATTGTGTGTTGTT 57.447 33.333 0.00 0.00 0.00 2.83
28 29 6.552859 TTGATATGTTCGATTGTGTGTTGT 57.447 33.333 0.00 0.00 0.00 3.32
29 30 7.466805 AGATTGATATGTTCGATTGTGTGTTG 58.533 34.615 0.00 0.00 0.00 3.33
30 31 7.615582 AGATTGATATGTTCGATTGTGTGTT 57.384 32.000 0.00 0.00 0.00 3.32
31 32 8.893219 ATAGATTGATATGTTCGATTGTGTGT 57.107 30.769 0.00 0.00 0.00 3.72
32 33 8.981647 TGATAGATTGATATGTTCGATTGTGTG 58.018 33.333 0.00 0.00 0.00 3.82
33 34 9.716531 ATGATAGATTGATATGTTCGATTGTGT 57.283 29.630 0.00 0.00 0.00 3.72
56 57 9.901172 GGAGATAAAGGTAAAGGTAAAAGATGA 57.099 33.333 0.00 0.00 0.00 2.92
57 58 9.121658 GGGAGATAAAGGTAAAGGTAAAAGATG 57.878 37.037 0.00 0.00 0.00 2.90
58 59 9.070210 AGGGAGATAAAGGTAAAGGTAAAAGAT 57.930 33.333 0.00 0.00 0.00 2.40
59 60 8.458951 AGGGAGATAAAGGTAAAGGTAAAAGA 57.541 34.615 0.00 0.00 0.00 2.52
60 61 7.774157 GGAGGGAGATAAAGGTAAAGGTAAAAG 59.226 40.741 0.00 0.00 0.00 2.27
61 62 7.312120 GGGAGGGAGATAAAGGTAAAGGTAAAA 60.312 40.741 0.00 0.00 0.00 1.52
62 63 6.159222 GGGAGGGAGATAAAGGTAAAGGTAAA 59.841 42.308 0.00 0.00 0.00 2.01
63 64 5.668991 GGGAGGGAGATAAAGGTAAAGGTAA 59.331 44.000 0.00 0.00 0.00 2.85
64 65 5.042065 AGGGAGGGAGATAAAGGTAAAGGTA 60.042 44.000 0.00 0.00 0.00 3.08
65 66 4.045736 GGGAGGGAGATAAAGGTAAAGGT 58.954 47.826 0.00 0.00 0.00 3.50
66 67 4.308128 AGGGAGGGAGATAAAGGTAAAGG 58.692 47.826 0.00 0.00 0.00 3.11
67 68 5.191921 ACAAGGGAGGGAGATAAAGGTAAAG 59.808 44.000 0.00 0.00 0.00 1.85
68 69 5.105853 ACAAGGGAGGGAGATAAAGGTAAA 58.894 41.667 0.00 0.00 0.00 2.01
69 70 4.706616 ACAAGGGAGGGAGATAAAGGTAA 58.293 43.478 0.00 0.00 0.00 2.85
70 71 4.363546 ACAAGGGAGGGAGATAAAGGTA 57.636 45.455 0.00 0.00 0.00 3.08
71 72 3.222394 ACAAGGGAGGGAGATAAAGGT 57.778 47.619 0.00 0.00 0.00 3.50
72 73 3.783082 AGAACAAGGGAGGGAGATAAAGG 59.217 47.826 0.00 0.00 0.00 3.11
73 74 5.190726 AGAAGAACAAGGGAGGGAGATAAAG 59.809 44.000 0.00 0.00 0.00 1.85
74 75 5.101529 AGAAGAACAAGGGAGGGAGATAAA 58.898 41.667 0.00 0.00 0.00 1.40
75 76 4.699994 AGAAGAACAAGGGAGGGAGATAA 58.300 43.478 0.00 0.00 0.00 1.75
76 77 4.354208 AGAAGAACAAGGGAGGGAGATA 57.646 45.455 0.00 0.00 0.00 1.98
77 78 3.213160 AGAAGAACAAGGGAGGGAGAT 57.787 47.619 0.00 0.00 0.00 2.75
78 79 2.723530 AGAAGAACAAGGGAGGGAGA 57.276 50.000 0.00 0.00 0.00 3.71
79 80 3.797559 AAAGAAGAACAAGGGAGGGAG 57.202 47.619 0.00 0.00 0.00 4.30
80 81 4.470602 GAAAAAGAAGAACAAGGGAGGGA 58.529 43.478 0.00 0.00 0.00 4.20
81 82 3.574396 GGAAAAAGAAGAACAAGGGAGGG 59.426 47.826 0.00 0.00 0.00 4.30
82 83 4.474394 AGGAAAAAGAAGAACAAGGGAGG 58.526 43.478 0.00 0.00 0.00 4.30
83 84 4.214332 CGAGGAAAAAGAAGAACAAGGGAG 59.786 45.833 0.00 0.00 0.00 4.30
84 85 4.134563 CGAGGAAAAAGAAGAACAAGGGA 58.865 43.478 0.00 0.00 0.00 4.20
85 86 3.883489 ACGAGGAAAAAGAAGAACAAGGG 59.117 43.478 0.00 0.00 0.00 3.95
86 87 5.297029 AGAACGAGGAAAAAGAAGAACAAGG 59.703 40.000 0.00 0.00 0.00 3.61
87 88 6.364945 AGAACGAGGAAAAAGAAGAACAAG 57.635 37.500 0.00 0.00 0.00 3.16
88 89 6.456449 CGAAGAACGAGGAAAAAGAAGAACAA 60.456 38.462 0.00 0.00 45.77 2.83
89 90 5.006358 CGAAGAACGAGGAAAAAGAAGAACA 59.994 40.000 0.00 0.00 45.77 3.18
90 91 5.006455 ACGAAGAACGAGGAAAAAGAAGAAC 59.994 40.000 0.00 0.00 45.77 3.01
91 92 5.114081 ACGAAGAACGAGGAAAAAGAAGAA 58.886 37.500 0.00 0.00 45.77 2.52
92 93 4.690122 ACGAAGAACGAGGAAAAAGAAGA 58.310 39.130 0.00 0.00 45.77 2.87
93 94 5.405331 AACGAAGAACGAGGAAAAAGAAG 57.595 39.130 0.00 0.00 45.77 2.85
94 95 4.026310 CGAACGAAGAACGAGGAAAAAGAA 60.026 41.667 0.00 0.00 45.77 2.52
95 96 3.488310 CGAACGAAGAACGAGGAAAAAGA 59.512 43.478 0.00 0.00 45.77 2.52
96 97 3.244579 ACGAACGAAGAACGAGGAAAAAG 59.755 43.478 0.14 0.00 45.77 2.27
97 98 3.189285 ACGAACGAAGAACGAGGAAAAA 58.811 40.909 0.14 0.00 45.77 1.94
98 99 2.813061 ACGAACGAAGAACGAGGAAAA 58.187 42.857 0.14 0.00 45.77 2.29
99 100 2.497107 ACGAACGAAGAACGAGGAAA 57.503 45.000 0.14 0.00 45.77 3.13
100 101 2.033801 AGAACGAACGAAGAACGAGGAA 59.966 45.455 0.14 0.00 45.77 3.36
101 102 1.605710 AGAACGAACGAAGAACGAGGA 59.394 47.619 0.14 0.00 45.77 3.71
102 103 2.047679 AGAACGAACGAAGAACGAGG 57.952 50.000 0.14 0.00 45.77 4.63
103 104 3.298317 AGAAGAACGAACGAAGAACGAG 58.702 45.455 0.14 0.00 45.77 4.18
104 105 3.344904 AGAAGAACGAACGAAGAACGA 57.655 42.857 0.14 0.00 45.77 3.85
106 107 4.773742 ACAAGAAGAACGAACGAAGAAC 57.226 40.909 0.14 0.00 0.00 3.01
107 108 4.628333 ACAACAAGAAGAACGAACGAAGAA 59.372 37.500 0.14 0.00 0.00 2.52
108 109 4.178540 ACAACAAGAAGAACGAACGAAGA 58.821 39.130 0.14 0.00 0.00 2.87
109 110 4.516092 ACAACAAGAAGAACGAACGAAG 57.484 40.909 0.14 0.00 0.00 3.79
110 111 4.505191 CCTACAACAAGAAGAACGAACGAA 59.495 41.667 0.14 0.00 0.00 3.85
111 112 4.046462 CCTACAACAAGAAGAACGAACGA 58.954 43.478 0.14 0.00 0.00 3.85
112 113 3.183775 CCCTACAACAAGAAGAACGAACG 59.816 47.826 0.00 0.00 0.00 3.95
113 114 3.059120 GCCCTACAACAAGAAGAACGAAC 60.059 47.826 0.00 0.00 0.00 3.95
114 115 3.135994 GCCCTACAACAAGAAGAACGAA 58.864 45.455 0.00 0.00 0.00 3.85
115 116 2.762745 GCCCTACAACAAGAAGAACGA 58.237 47.619 0.00 0.00 0.00 3.85
116 117 1.459592 CGCCCTACAACAAGAAGAACG 59.540 52.381 0.00 0.00 0.00 3.95
117 118 2.479275 GTCGCCCTACAACAAGAAGAAC 59.521 50.000 0.00 0.00 0.00 3.01
118 119 2.762745 GTCGCCCTACAACAAGAAGAA 58.237 47.619 0.00 0.00 0.00 2.52
119 120 1.336517 CGTCGCCCTACAACAAGAAGA 60.337 52.381 0.00 0.00 0.00 2.87
120 121 1.068474 CGTCGCCCTACAACAAGAAG 58.932 55.000 0.00 0.00 0.00 2.85
121 122 0.675083 TCGTCGCCCTACAACAAGAA 59.325 50.000 0.00 0.00 0.00 2.52
122 123 0.675083 TTCGTCGCCCTACAACAAGA 59.325 50.000 0.00 0.00 0.00 3.02
123 124 0.788391 GTTCGTCGCCCTACAACAAG 59.212 55.000 0.00 0.00 0.00 3.16
124 125 0.600782 GGTTCGTCGCCCTACAACAA 60.601 55.000 0.00 0.00 0.00 2.83
125 126 1.005867 GGTTCGTCGCCCTACAACA 60.006 57.895 0.00 0.00 0.00 3.33
126 127 0.735287 GAGGTTCGTCGCCCTACAAC 60.735 60.000 3.60 0.00 0.00 3.32
127 128 1.588082 GAGGTTCGTCGCCCTACAA 59.412 57.895 3.60 0.00 0.00 2.41
128 129 2.693762 CGAGGTTCGTCGCCCTACA 61.694 63.158 3.60 0.00 34.72 2.74
129 130 2.101770 CGAGGTTCGTCGCCCTAC 59.898 66.667 3.60 0.00 34.72 3.18
130 131 2.046023 TCGAGGTTCGTCGCCCTA 60.046 61.111 9.54 0.00 41.35 3.53
131 132 3.441290 CTCGAGGTTCGTCGCCCT 61.441 66.667 3.91 3.27 41.35 5.19
132 133 4.493747 CCTCGAGGTTCGTCGCCC 62.494 72.222 24.04 0.00 41.35 6.13
133 134 3.437795 TCCTCGAGGTTCGTCGCC 61.438 66.667 30.17 0.00 41.35 5.54
134 135 2.202453 GTCCTCGAGGTTCGTCGC 60.202 66.667 30.17 9.73 41.35 5.19
135 136 0.742281 TAGGTCCTCGAGGTTCGTCG 60.742 60.000 30.17 3.69 41.35 5.12
136 137 1.015868 CTAGGTCCTCGAGGTTCGTC 58.984 60.000 30.17 15.70 41.35 4.20
137 138 0.394080 CCTAGGTCCTCGAGGTTCGT 60.394 60.000 30.17 24.49 41.35 3.85
138 139 1.102222 CCCTAGGTCCTCGAGGTTCG 61.102 65.000 30.17 14.92 42.10 3.95
139 140 0.756070 CCCCTAGGTCCTCGAGGTTC 60.756 65.000 30.17 22.53 36.64 3.62
140 141 1.310373 CCCCTAGGTCCTCGAGGTT 59.690 63.158 30.17 18.89 36.64 3.50
141 142 3.017139 CCCCTAGGTCCTCGAGGT 58.983 66.667 30.17 14.67 36.64 3.85
142 143 2.522193 GCCCCTAGGTCCTCGAGG 60.522 72.222 26.32 26.32 37.91 4.63
143 144 2.700407 ATCGCCCCTAGGTCCTCGAG 62.700 65.000 8.29 5.13 34.57 4.04
144 145 2.693896 GATCGCCCCTAGGTCCTCGA 62.694 65.000 8.29 10.72 34.57 4.04
145 146 2.203509 ATCGCCCCTAGGTCCTCG 60.204 66.667 8.29 5.52 34.57 4.63
146 147 1.152525 TGATCGCCCCTAGGTCCTC 60.153 63.158 8.29 0.00 34.57 3.71
147 148 1.152440 CTGATCGCCCCTAGGTCCT 60.152 63.158 8.29 0.00 34.57 3.85
148 149 2.210711 CCTGATCGCCCCTAGGTCC 61.211 68.421 8.29 0.00 34.57 4.46
149 150 1.457831 ACCTGATCGCCCCTAGGTC 60.458 63.158 8.29 0.00 39.23 3.85
150 151 1.457831 GACCTGATCGCCCCTAGGT 60.458 63.158 8.29 0.00 45.77 3.08
151 152 2.565645 CGACCTGATCGCCCCTAGG 61.566 68.421 0.06 0.06 45.52 3.02
152 153 3.043419 CGACCTGATCGCCCCTAG 58.957 66.667 0.00 0.00 45.52 3.02
165 166 2.424733 GGGCTGTCCTAGGTCGACC 61.425 68.421 27.67 27.67 0.00 4.79
166 167 1.043673 ATGGGCTGTCCTAGGTCGAC 61.044 60.000 7.13 7.13 36.20 4.20
167 168 0.554305 TATGGGCTGTCCTAGGTCGA 59.446 55.000 9.08 0.00 36.20 4.20
168 169 0.962489 CTATGGGCTGTCCTAGGTCG 59.038 60.000 9.08 1.27 36.20 4.79
169 170 0.682292 GCTATGGGCTGTCCTAGGTC 59.318 60.000 9.08 3.43 38.06 3.85
170 171 2.841595 GCTATGGGCTGTCCTAGGT 58.158 57.895 9.08 0.00 38.06 3.08
183 184 4.647615 AGGCGCGCGGTAGCTATG 62.648 66.667 33.06 0.00 42.32 2.23
184 185 3.912907 AAGGCGCGCGGTAGCTAT 61.913 61.111 33.06 4.71 42.32 2.97
185 186 4.865761 CAAGGCGCGCGGTAGCTA 62.866 66.667 33.06 0.00 42.32 3.32
196 197 3.358076 GAGAGACCCCGTCAAGGCG 62.358 68.421 0.00 0.00 39.21 5.52
197 198 2.579738 GAGAGACCCCGTCAAGGC 59.420 66.667 0.00 0.00 39.21 4.35
198 199 3.300013 GGAGAGACCCCGTCAAGG 58.700 66.667 0.00 0.00 34.60 3.61
222 223 1.829523 TAAGGACCCGAAACCCCACG 61.830 60.000 0.00 0.00 0.00 4.94
223 224 0.401356 TTAAGGACCCGAAACCCCAC 59.599 55.000 0.00 0.00 0.00 4.61
224 225 1.147333 TTTAAGGACCCGAAACCCCA 58.853 50.000 0.00 0.00 0.00 4.96
225 226 2.165167 CTTTTAAGGACCCGAAACCCC 58.835 52.381 0.00 0.00 0.00 4.95
226 227 1.542915 GCTTTTAAGGACCCGAAACCC 59.457 52.381 0.00 0.00 0.00 4.11
227 228 2.486982 GAGCTTTTAAGGACCCGAAACC 59.513 50.000 0.00 0.00 0.00 3.27
228 229 2.486982 GGAGCTTTTAAGGACCCGAAAC 59.513 50.000 0.00 0.00 0.00 2.78
229 230 2.553685 GGGAGCTTTTAAGGACCCGAAA 60.554 50.000 0.00 0.00 0.00 3.46
230 231 1.003928 GGGAGCTTTTAAGGACCCGAA 59.996 52.381 0.00 0.00 0.00 4.30
231 232 0.616891 GGGAGCTTTTAAGGACCCGA 59.383 55.000 0.00 0.00 0.00 5.14
232 233 3.170360 GGGAGCTTTTAAGGACCCG 57.830 57.895 0.00 0.00 0.00 5.28
233 234 3.170360 CGGGAGCTTTTAAGGACCC 57.830 57.895 0.00 0.00 0.00 4.46
251 252 2.403586 GTACGCAAGCAATCCGGC 59.596 61.111 0.00 0.00 45.62 6.13
252 253 3.098555 GGTACGCAAGCAATCCGG 58.901 61.111 0.00 0.00 45.62 5.14
269 270 3.564027 GACCCATCCGAAAGCGCG 61.564 66.667 0.00 0.00 35.83 6.86
270 271 2.125106 AGACCCATCCGAAAGCGC 60.125 61.111 0.00 0.00 35.83 5.92
271 272 1.521681 GGAGACCCATCCGAAAGCG 60.522 63.158 0.00 0.00 37.24 4.68
272 273 0.253327 AAGGAGACCCATCCGAAAGC 59.747 55.000 0.00 0.00 44.65 3.51
273 274 2.027192 TCAAAGGAGACCCATCCGAAAG 60.027 50.000 0.00 0.00 44.65 2.62
274 275 1.982226 TCAAAGGAGACCCATCCGAAA 59.018 47.619 0.00 0.00 44.65 3.46
275 276 1.278127 GTCAAAGGAGACCCATCCGAA 59.722 52.381 0.00 0.00 44.65 4.30
276 277 0.902531 GTCAAAGGAGACCCATCCGA 59.097 55.000 0.00 0.00 44.65 4.55
277 278 0.460284 CGTCAAAGGAGACCCATCCG 60.460 60.000 0.00 0.00 44.65 4.18
278 279 0.613777 ACGTCAAAGGAGACCCATCC 59.386 55.000 0.00 0.00 39.89 3.51
279 280 1.275291 TCACGTCAAAGGAGACCCATC 59.725 52.381 0.00 0.00 35.07 3.51
280 281 1.276421 CTCACGTCAAAGGAGACCCAT 59.724 52.381 0.00 0.00 35.07 4.00
281 282 0.679505 CTCACGTCAAAGGAGACCCA 59.320 55.000 0.00 0.00 35.07 4.51
282 283 0.670854 GCTCACGTCAAAGGAGACCC 60.671 60.000 4.17 0.00 35.07 4.46
283 284 0.318762 AGCTCACGTCAAAGGAGACC 59.681 55.000 4.17 0.00 35.07 3.85
284 285 1.423395 CAGCTCACGTCAAAGGAGAC 58.577 55.000 4.17 0.00 35.19 3.36
285 286 0.319900 GCAGCTCACGTCAAAGGAGA 60.320 55.000 4.17 0.00 0.00 3.71
286 287 1.621301 CGCAGCTCACGTCAAAGGAG 61.621 60.000 0.00 0.00 0.00 3.69
287 288 1.664649 CGCAGCTCACGTCAAAGGA 60.665 57.895 0.00 0.00 0.00 3.36
288 289 2.671177 CCGCAGCTCACGTCAAAGG 61.671 63.158 5.06 0.00 0.00 3.11
289 290 1.956170 ACCGCAGCTCACGTCAAAG 60.956 57.895 5.06 0.00 0.00 2.77
290 291 2.108157 ACCGCAGCTCACGTCAAA 59.892 55.556 5.06 0.00 0.00 2.69
291 292 2.661537 CACCGCAGCTCACGTCAA 60.662 61.111 5.06 0.00 0.00 3.18
294 295 4.687215 ATGCACCGCAGCTCACGT 62.687 61.111 5.06 0.00 43.65 4.49
295 296 3.857854 GATGCACCGCAGCTCACG 61.858 66.667 0.00 0.00 43.65 4.35
296 297 2.743538 TGATGCACCGCAGCTCAC 60.744 61.111 5.76 0.00 45.80 3.51
297 298 2.743538 GTGATGCACCGCAGCTCA 60.744 61.111 5.76 0.00 45.80 4.26
298 299 3.503363 GGTGATGCACCGCAGCTC 61.503 66.667 5.76 1.79 45.80 4.09
306 307 4.760047 ACGCCGAGGGTGATGCAC 62.760 66.667 1.62 0.00 36.58 4.57
307 308 4.015406 AACGCCGAGGGTGATGCA 62.015 61.111 1.62 0.00 36.58 3.96
308 309 3.499737 CAACGCCGAGGGTGATGC 61.500 66.667 1.62 0.00 36.58 3.91
309 310 2.819595 CCAACGCCGAGGGTGATG 60.820 66.667 1.62 0.24 36.07 3.07
310 311 3.000819 TCCAACGCCGAGGGTGAT 61.001 61.111 1.62 0.00 36.58 3.06
311 312 3.691342 CTCCAACGCCGAGGGTGA 61.691 66.667 1.62 0.00 36.58 4.02
312 313 1.672854 TATCTCCAACGCCGAGGGTG 61.673 60.000 0.00 0.00 39.41 4.61
313 314 1.380785 TATCTCCAACGCCGAGGGT 60.381 57.895 0.00 0.00 0.00 4.34
314 315 1.067582 GTATCTCCAACGCCGAGGG 59.932 63.158 0.00 0.00 0.00 4.30
315 316 0.527817 GTGTATCTCCAACGCCGAGG 60.528 60.000 0.00 0.00 0.00 4.63
316 317 0.866061 CGTGTATCTCCAACGCCGAG 60.866 60.000 0.00 0.00 0.00 4.63
317 318 1.138036 CGTGTATCTCCAACGCCGA 59.862 57.895 0.00 0.00 0.00 5.54
318 319 1.876714 CCGTGTATCTCCAACGCCG 60.877 63.158 0.00 0.00 36.02 6.46
319 320 0.457035 TACCGTGTATCTCCAACGCC 59.543 55.000 0.00 0.00 36.02 5.68
320 321 1.922545 GTTACCGTGTATCTCCAACGC 59.077 52.381 0.00 0.00 36.02 4.84
321 322 2.179589 CGTTACCGTGTATCTCCAACG 58.820 52.381 0.00 0.00 37.07 4.10
341 342 0.163788 CTTTGATCGCACACGGACAC 59.836 55.000 0.00 0.00 40.63 3.67
342 343 0.948623 CCTTTGATCGCACACGGACA 60.949 55.000 0.00 0.00 40.63 4.02
343 344 1.635663 CCCTTTGATCGCACACGGAC 61.636 60.000 0.00 0.00 40.63 4.79
344 345 1.375396 CCCTTTGATCGCACACGGA 60.375 57.895 0.00 0.00 40.63 4.69
345 346 1.635663 GACCCTTTGATCGCACACGG 61.636 60.000 0.00 0.00 40.63 4.94
346 347 1.635663 GGACCCTTTGATCGCACACG 61.636 60.000 0.00 0.00 42.01 4.49
347 348 0.605319 TGGACCCTTTGATCGCACAC 60.605 55.000 0.00 0.00 0.00 3.82
348 349 0.321564 CTGGACCCTTTGATCGCACA 60.322 55.000 0.00 0.00 0.00 4.57
349 350 1.648467 GCTGGACCCTTTGATCGCAC 61.648 60.000 0.00 0.00 0.00 5.34
350 351 1.377202 GCTGGACCCTTTGATCGCA 60.377 57.895 0.00 0.00 0.00 5.10
351 352 2.115291 GGCTGGACCCTTTGATCGC 61.115 63.158 0.00 0.00 0.00 4.58
352 353 1.815421 CGGCTGGACCCTTTGATCG 60.815 63.158 0.00 0.00 33.26 3.69
353 354 1.452108 CCGGCTGGACCCTTTGATC 60.452 63.158 5.28 0.00 37.49 2.92
354 355 1.497309 TTCCGGCTGGACCCTTTGAT 61.497 55.000 15.79 0.00 46.45 2.57
355 356 2.150719 TTCCGGCTGGACCCTTTGA 61.151 57.895 15.79 0.00 46.45 2.69
356 357 1.971695 GTTCCGGCTGGACCCTTTG 60.972 63.158 15.79 0.00 46.45 2.77
357 358 2.434774 GTTCCGGCTGGACCCTTT 59.565 61.111 15.79 0.00 46.45 3.11
358 359 3.647771 GGTTCCGGCTGGACCCTT 61.648 66.667 20.69 0.00 46.45 3.95
362 363 4.778143 ATGCGGTTCCGGCTGGAC 62.778 66.667 15.79 9.69 46.45 4.02
381 382 4.157289 TGCTCTTTGCTTCCAAATCAGATC 59.843 41.667 0.00 0.00 39.98 2.75
401 402 2.123033 AACCCCCGCCTTTTTGCT 60.123 55.556 0.00 0.00 0.00 3.91
465 466 3.669036 GAAGAGACGAGAGCGCGCA 62.669 63.158 35.10 0.00 42.48 6.09
522 523 2.035783 GGTTTGGGGACTGGAGGC 59.964 66.667 0.00 0.00 0.00 4.70
524 525 2.763902 GGGGTTTGGGGACTGGAG 59.236 66.667 0.00 0.00 0.00 3.86
651 672 1.970114 GACGAGACGACCACCTCCA 60.970 63.158 0.00 0.00 0.00 3.86
664 685 2.027625 GGCAAAGGTGGACGACGAG 61.028 63.158 0.00 0.00 0.00 4.18
665 686 2.029964 GGCAAAGGTGGACGACGA 59.970 61.111 0.00 0.00 0.00 4.20
666 687 3.411351 CGGCAAAGGTGGACGACG 61.411 66.667 0.00 0.00 0.00 5.12
667 688 3.047877 CCGGCAAAGGTGGACGAC 61.048 66.667 0.00 0.00 0.00 4.34
668 689 4.323477 CCCGGCAAAGGTGGACGA 62.323 66.667 0.00 0.00 0.00 4.20
752 774 1.300931 TGACGCTTCACAGTGCTCC 60.301 57.895 0.00 0.00 33.32 4.70
764 793 2.591753 CCCATCCCATGTGACGCT 59.408 61.111 0.00 0.00 0.00 5.07
872 926 3.465403 CGGGACCTGGAGCTGGAG 61.465 72.222 0.00 0.00 0.00 3.86
1069 1135 2.034879 GGATATGGCCGCGTCCATG 61.035 63.158 30.55 3.07 45.84 3.66
1186 1252 7.205992 CCCAGAAAGAAAGAAAGAAAGAAAGG 58.794 38.462 0.00 0.00 0.00 3.11
1191 1257 4.540824 CGCCCAGAAAGAAAGAAAGAAAG 58.459 43.478 0.00 0.00 0.00 2.62
1192 1258 3.317993 CCGCCCAGAAAGAAAGAAAGAAA 59.682 43.478 0.00 0.00 0.00 2.52
1195 1261 1.541588 CCCGCCCAGAAAGAAAGAAAG 59.458 52.381 0.00 0.00 0.00 2.62
1197 1263 0.251165 CCCCGCCCAGAAAGAAAGAA 60.251 55.000 0.00 0.00 0.00 2.52
1198 1264 1.378762 CCCCGCCCAGAAAGAAAGA 59.621 57.895 0.00 0.00 0.00 2.52
1199 1265 1.678970 CCCCCGCCCAGAAAGAAAG 60.679 63.158 0.00 0.00 0.00 2.62
1200 1266 2.438795 CCCCCGCCCAGAAAGAAA 59.561 61.111 0.00 0.00 0.00 2.52
1267 1334 1.733402 CTGCGCCCAAACAACTGGAA 61.733 55.000 4.18 0.00 38.96 3.53
1268 1335 2.124109 TGCGCCCAAACAACTGGA 60.124 55.556 4.18 0.00 38.96 3.86
1269 1336 2.336088 CTGCGCCCAAACAACTGG 59.664 61.111 4.18 0.00 36.10 4.00
1270 1337 2.355009 GCTGCGCCCAAACAACTG 60.355 61.111 4.18 0.00 0.00 3.16
1271 1338 2.832661 TGCTGCGCCCAAACAACT 60.833 55.556 4.18 0.00 0.00 3.16
1272 1339 2.355009 CTGCTGCGCCCAAACAAC 60.355 61.111 4.18 0.00 0.00 3.32
1273 1340 2.832661 ACTGCTGCGCCCAAACAA 60.833 55.556 4.18 0.00 0.00 2.83
1274 1341 3.594775 CACTGCTGCGCCCAAACA 61.595 61.111 4.18 0.00 0.00 2.83
1275 1342 4.347453 CCACTGCTGCGCCCAAAC 62.347 66.667 4.18 0.00 0.00 2.93
1284 1351 3.850098 GACCCACACCCCACTGCTG 62.850 68.421 0.00 0.00 0.00 4.41
1285 1352 3.570212 GACCCACACCCCACTGCT 61.570 66.667 0.00 0.00 0.00 4.24
1350 1424 2.039974 CACAGCACATTGCCCGCTA 61.040 57.895 0.00 0.00 46.52 4.26
1708 1782 4.351874 TGAAAGGCAGCTGGTATATACC 57.648 45.455 22.97 22.97 46.62 2.73
1719 1815 1.938625 TGCACTTTTTGAAAGGCAGC 58.061 45.000 10.45 8.92 0.00 5.25
1737 1833 3.068165 TCCTCTCGGTAGCACATATGTTG 59.932 47.826 5.37 3.38 0.00 3.33
1740 1836 2.887783 AGTCCTCTCGGTAGCACATATG 59.112 50.000 0.00 0.00 0.00 1.78
1748 1852 3.134021 GACGAAAAGTCCTCTCGGTAG 57.866 52.381 0.00 0.00 43.95 3.18
1767 1871 5.754778 CAATGCAGCGATCTTATCAATTGA 58.245 37.500 11.26 11.26 0.00 2.57
1800 1904 3.305398 ACAGTCACTCGAAGATCAACC 57.695 47.619 0.00 0.00 33.89 3.77
1802 1906 5.473846 AGAGTAACAGTCACTCGAAGATCAA 59.526 40.000 0.00 0.00 45.76 2.57
1825 1929 6.804677 AGCATGTATGAGAAGTTCAGACTAG 58.195 40.000 5.50 0.00 45.95 2.57
1840 1944 5.410067 CCCCAACTAAAACAAGCATGTATG 58.590 41.667 0.00 0.00 39.40 2.39
1858 1962 0.969894 CATTTTGGTTACGCCCCCAA 59.030 50.000 0.00 0.00 38.92 4.12
1888 1992 3.619038 GCGAATCTTCAGTAGTTCCAAGG 59.381 47.826 0.00 0.00 0.00 3.61
2023 2132 4.256110 TGCTGTCATGGACAAGTATCAAG 58.744 43.478 0.33 0.00 42.26 3.02
2030 2139 4.778534 AAAGATTGCTGTCATGGACAAG 57.221 40.909 0.33 0.00 42.26 3.16
2178 2476 2.092429 ACGGAATGCCCATCACAGTAAT 60.092 45.455 0.00 0.00 34.14 1.89
2182 2480 0.392863 TGACGGAATGCCCATCACAG 60.393 55.000 0.00 0.00 34.14 3.66
2185 2483 2.142356 AAATGACGGAATGCCCATCA 57.858 45.000 0.00 0.00 32.15 3.07
2209 2507 7.883833 TGATGTCTATATCAGAGTGGTACCTAC 59.116 40.741 14.36 9.74 32.51 3.18
2317 2616 1.133823 TGTCTGCATTCCCACACAAGT 60.134 47.619 0.00 0.00 0.00 3.16
2332 2631 4.763073 TCATTAGAAGGTCAGCATGTCTG 58.237 43.478 9.94 9.94 44.21 3.51
2493 2792 1.566703 TCACCAAGACCCAAGTTTCCA 59.433 47.619 0.00 0.00 0.00 3.53
2604 2903 4.716784 TGATGAAGGCATTAGTAGGAGTGT 59.283 41.667 0.00 0.00 34.11 3.55
2678 2981 5.045505 TGTTGGGTGCTTGATAATACCACTA 60.046 40.000 0.00 0.00 34.89 2.74
2748 3051 4.349636 TCCTTGTTTCTGAATACTGGTCCA 59.650 41.667 0.00 0.00 0.00 4.02
2753 3056 4.154918 GCCAGTCCTTGTTTCTGAATACTG 59.845 45.833 0.00 0.00 34.33 2.74
2762 3065 1.882623 CAGGAAGCCAGTCCTTGTTTC 59.117 52.381 0.00 0.00 46.42 2.78
2837 3140 9.745018 ATGTTTCCATTTAGAGATTCTTCTGAA 57.255 29.630 0.00 0.00 36.54 3.02
2838 3141 9.388506 GATGTTTCCATTTAGAGATTCTTCTGA 57.611 33.333 0.00 0.00 30.30 3.27
2911 3219 1.558756 GATGGGGATGGCTAGATGAGG 59.441 57.143 0.00 0.00 0.00 3.86
2974 3283 3.644265 GGGTAAGCCTCCTTTTCCAAAAA 59.356 43.478 0.00 0.00 32.47 1.94
2975 3284 3.236047 GGGTAAGCCTCCTTTTCCAAAA 58.764 45.455 0.00 0.00 32.47 2.44
2976 3285 2.492010 GGGGTAAGCCTCCTTTTCCAAA 60.492 50.000 0.00 0.00 32.47 3.28
2977 3286 1.076513 GGGGTAAGCCTCCTTTTCCAA 59.923 52.381 0.00 0.00 32.47 3.53
2978 3287 0.702316 GGGGTAAGCCTCCTTTTCCA 59.298 55.000 0.00 0.00 32.47 3.53
2979 3288 3.590643 GGGGTAAGCCTCCTTTTCC 57.409 57.895 0.00 0.00 32.47 3.13
2989 3298 4.176752 CAGAGGCCGGGGGTAAGC 62.177 72.222 2.18 0.00 0.00 3.09
2990 3299 4.176752 GCAGAGGCCGGGGGTAAG 62.177 72.222 2.18 0.00 0.00 2.34
2992 3301 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
2997 3306 4.899239 GTCGGATGCAGAGGCCGG 62.899 72.222 16.62 0.00 44.87 6.13
2998 3307 2.859273 AAAGTCGGATGCAGAGGCCG 62.859 60.000 12.24 12.24 46.08 6.13
2999 3308 0.678048 AAAAGTCGGATGCAGAGGCC 60.678 55.000 0.00 0.00 40.13 5.19
3000 3309 1.666189 GTAAAAGTCGGATGCAGAGGC 59.334 52.381 0.00 0.00 41.68 4.70
3001 3310 2.972625 TGTAAAAGTCGGATGCAGAGG 58.027 47.619 0.00 0.00 0.00 3.69
3002 3311 3.242543 GCATGTAAAAGTCGGATGCAGAG 60.243 47.826 0.00 0.00 39.39 3.35
3003 3312 2.677836 GCATGTAAAAGTCGGATGCAGA 59.322 45.455 0.00 0.00 39.39 4.26
3004 3313 2.419673 TGCATGTAAAAGTCGGATGCAG 59.580 45.455 0.00 0.00 43.34 4.41
3005 3314 2.431454 TGCATGTAAAAGTCGGATGCA 58.569 42.857 0.00 0.00 45.38 3.96
3006 3315 3.485947 TTGCATGTAAAAGTCGGATGC 57.514 42.857 0.00 0.00 39.90 3.91
3007 3316 3.792956 GCATTGCATGTAAAAGTCGGATG 59.207 43.478 3.15 0.00 0.00 3.51
3008 3317 3.696051 AGCATTGCATGTAAAAGTCGGAT 59.304 39.130 11.91 0.00 0.00 4.18
3009 3318 3.081061 AGCATTGCATGTAAAAGTCGGA 58.919 40.909 11.91 0.00 0.00 4.55
3010 3319 3.173599 CAGCATTGCATGTAAAAGTCGG 58.826 45.455 11.91 0.00 0.00 4.79
3011 3320 3.825308 ACAGCATTGCATGTAAAAGTCG 58.175 40.909 11.91 0.00 0.00 4.18
3012 3321 5.051891 AGACAGCATTGCATGTAAAAGTC 57.948 39.130 11.91 6.61 0.00 3.01
3013 3322 5.242393 AGAAGACAGCATTGCATGTAAAAGT 59.758 36.000 11.91 0.00 0.00 2.66
3014 3323 5.706916 AGAAGACAGCATTGCATGTAAAAG 58.293 37.500 11.91 0.00 0.00 2.27
3015 3324 5.710513 AGAAGACAGCATTGCATGTAAAA 57.289 34.783 11.91 0.00 0.00 1.52
3016 3325 5.704978 TGTAGAAGACAGCATTGCATGTAAA 59.295 36.000 11.91 0.00 32.86 2.01
3079 3389 6.704050 AGAACAAAGAGAGCAAGTAAGAAGAC 59.296 38.462 0.00 0.00 0.00 3.01
3096 3406 5.712152 AACCTGGAAGCATAAGAACAAAG 57.288 39.130 0.00 0.00 0.00 2.77
3263 3575 9.605275 TTATGTGGAACTAGATGATCTTCAAAG 57.395 33.333 0.00 9.57 38.04 2.77
3356 4166 9.764870 CCTGAAGATATAATCATAAACATTGCG 57.235 33.333 0.00 0.00 0.00 4.85
3364 4174 8.659527 TGGACTTGCCTGAAGATATAATCATAA 58.340 33.333 0.00 0.00 37.63 1.90
3381 4191 1.271597 CCCTATGGCTATGGACTTGCC 60.272 57.143 0.00 0.00 44.98 4.52
3408 4218 6.014242 CACTACATTGCCTCTAGATATCCCAA 60.014 42.308 0.00 0.00 0.00 4.12
3409 4219 5.481824 CACTACATTGCCTCTAGATATCCCA 59.518 44.000 0.00 0.00 0.00 4.37
3517 4328 7.918562 TGTAACAAAAGAAAACTTGATAGCACC 59.081 33.333 0.00 0.00 0.00 5.01
3560 4377 4.703575 CACAGACCTCAATCACCAATCAAT 59.296 41.667 0.00 0.00 0.00 2.57
3561 4378 4.074259 CACAGACCTCAATCACCAATCAA 58.926 43.478 0.00 0.00 0.00 2.57
3562 4379 3.327464 TCACAGACCTCAATCACCAATCA 59.673 43.478 0.00 0.00 0.00 2.57
3563 4380 3.942829 TCACAGACCTCAATCACCAATC 58.057 45.455 0.00 0.00 0.00 2.67
3564 4381 4.042062 TCTTCACAGACCTCAATCACCAAT 59.958 41.667 0.00 0.00 0.00 3.16
3565 4382 3.390967 TCTTCACAGACCTCAATCACCAA 59.609 43.478 0.00 0.00 0.00 3.67
3566 4383 2.972021 TCTTCACAGACCTCAATCACCA 59.028 45.455 0.00 0.00 0.00 4.17
3567 4384 3.685139 TCTTCACAGACCTCAATCACC 57.315 47.619 0.00 0.00 0.00 4.02
3568 4385 3.999663 CCTTCTTCACAGACCTCAATCAC 59.000 47.826 0.00 0.00 0.00 3.06
3569 4386 3.648067 ACCTTCTTCACAGACCTCAATCA 59.352 43.478 0.00 0.00 0.00 2.57
3570 4387 4.278975 ACCTTCTTCACAGACCTCAATC 57.721 45.455 0.00 0.00 0.00 2.67
3842 4659 5.008217 TGCATATACAAAACTGATTACGGCC 59.992 40.000 0.00 0.00 0.00 6.13
4092 4910 2.558795 CCCGATCGGATGAGTTATGACT 59.441 50.000 35.42 0.00 36.65 3.41
4093 4911 2.927014 GCCCGATCGGATGAGTTATGAC 60.927 54.545 35.42 7.66 37.50 3.06
4173 4991 1.971357 GGGCTCAAATCTAGGATCCGA 59.029 52.381 5.98 0.00 0.00 4.55
4175 4993 4.141390 TGAAAGGGCTCAAATCTAGGATCC 60.141 45.833 2.48 2.48 0.00 3.36
4345 5165 3.727726 TGTCGACCATAATATGCCAGTG 58.272 45.455 14.12 0.00 0.00 3.66
4360 5191 5.357257 ACACTGGGAACATAATATGTCGAC 58.643 41.667 9.11 9.11 44.07 4.20
4376 5370 4.339247 ACAAGTGAAAGATGAAACACTGGG 59.661 41.667 0.00 0.00 41.73 4.45
4379 5373 5.192927 TGGACAAGTGAAAGATGAAACACT 58.807 37.500 0.00 0.00 43.92 3.55
4418 5412 6.479990 TGAAAATATGAGACGATTAGTGCAGG 59.520 38.462 0.00 0.00 0.00 4.85
4474 5468 1.747355 GGGGAACAGTGATCAGCATTG 59.253 52.381 0.00 0.00 39.85 2.82
4495 5489 4.082125 CCTCTGGAAAATTAACCTGTGCT 58.918 43.478 0.00 0.00 0.00 4.40
4513 5507 2.092753 CACATGCCATACCTGTTCCTCT 60.093 50.000 0.00 0.00 0.00 3.69
4558 5552 6.476706 GCATAAATTTGCTGGTTATGACTTCC 59.523 38.462 0.00 0.00 37.39 3.46
4733 5729 1.432514 CATGACCGAGTTGTCCACTG 58.567 55.000 0.00 0.00 35.01 3.66
4850 5853 3.068024 GTGTTCCTTCAGGATTGTGCAAA 59.932 43.478 0.00 0.00 44.98 3.68
4977 5980 2.144730 CGAGCGCCTACTAGTATCTGT 58.855 52.381 2.29 0.00 0.00 3.41
4988 5991 0.315886 TGTCTGAAAACGAGCGCCTA 59.684 50.000 2.29 0.00 0.00 3.93
4992 5995 1.487482 TGTCTGTCTGAAAACGAGCG 58.513 50.000 0.00 0.00 0.00 5.03
4995 5998 5.465390 CCATTAGTTGTCTGTCTGAAAACGA 59.535 40.000 7.03 0.44 45.28 3.85
4997 6000 6.619801 ACCATTAGTTGTCTGTCTGAAAAC 57.380 37.500 4.93 4.93 41.95 2.43
5116 6360 2.072298 CTCGCAAGGAGAAAGAGGTTG 58.928 52.381 0.00 0.00 46.23 3.77
5129 6373 8.443160 TGTAAAAGAACTTCATATTCTCGCAAG 58.557 33.333 0.00 0.00 35.31 4.01
5160 6404 4.380531 TCAATCTTCAGTGACAGTCCAAC 58.619 43.478 0.00 0.00 0.00 3.77
5162 6406 4.323028 GGATCAATCTTCAGTGACAGTCCA 60.323 45.833 0.00 0.00 0.00 4.02
5190 6434 3.270027 TGATTTGGCAACCTACAGATCG 58.730 45.455 0.00 0.00 32.60 3.69
5191 6435 3.629398 CCTGATTTGGCAACCTACAGATC 59.371 47.826 17.47 10.00 0.00 2.75
5346 6591 0.031994 GGTGAACAATGCGCAAGGTT 59.968 50.000 24.39 24.39 38.28 3.50
5432 6677 2.960688 AACGCCAGGAGAAGGAGGC 61.961 63.158 0.00 0.00 43.61 4.70
5527 6780 3.138884 TGCAGCTACTGAAACATTCCA 57.861 42.857 0.00 0.00 32.44 3.53
5528 6781 3.065925 GGATGCAGCTACTGAAACATTCC 59.934 47.826 0.22 0.00 32.44 3.01
5538 6791 0.898320 AAGTGTCGGATGCAGCTACT 59.102 50.000 0.22 0.00 0.00 2.57
5586 6839 8.631480 AAAACTGAAAATAGGGATAAGAACGT 57.369 30.769 0.00 0.00 0.00 3.99
5600 6853 9.635520 CAGATTGAGCTATGAAAAACTGAAAAT 57.364 29.630 0.00 0.00 0.00 1.82
5601 6854 8.084073 CCAGATTGAGCTATGAAAAACTGAAAA 58.916 33.333 0.00 0.00 0.00 2.29
5602 6855 7.448161 TCCAGATTGAGCTATGAAAAACTGAAA 59.552 33.333 0.00 0.00 0.00 2.69
5603 6856 6.942005 TCCAGATTGAGCTATGAAAAACTGAA 59.058 34.615 0.00 0.00 0.00 3.02
5604 6857 6.372659 GTCCAGATTGAGCTATGAAAAACTGA 59.627 38.462 0.00 0.00 0.00 3.41
5605 6858 6.373774 AGTCCAGATTGAGCTATGAAAAACTG 59.626 38.462 0.00 0.00 0.00 3.16
5606 6859 6.479884 AGTCCAGATTGAGCTATGAAAAACT 58.520 36.000 0.00 0.00 0.00 2.66
5607 6860 6.749923 AGTCCAGATTGAGCTATGAAAAAC 57.250 37.500 0.00 0.00 0.00 2.43
5608 6861 8.862325 TTTAGTCCAGATTGAGCTATGAAAAA 57.138 30.769 0.00 0.00 0.00 1.94
5698 6953 9.797556 CTCATTTCATTTTCATTAGCTCATTGA 57.202 29.630 0.00 0.00 0.00 2.57
5699 6954 9.797556 TCTCATTTCATTTTCATTAGCTCATTG 57.202 29.630 0.00 0.00 0.00 2.82
5738 6993 1.132977 TGTAGACAGTTGAGGGACCCA 60.133 52.381 14.60 0.00 0.00 4.51
5739 6994 1.275573 GTGTAGACAGTTGAGGGACCC 59.724 57.143 0.59 0.59 0.00 4.46
5770 7025 8.654485 TGTTTAAGTCTAGTATAAGTGGTCCA 57.346 34.615 0.00 0.00 0.00 4.02
5774 7029 9.250624 GAGCATGTTTAAGTCTAGTATAAGTGG 57.749 37.037 0.00 0.00 0.00 4.00
5788 7056 3.983344 GCACCACAAAGAGCATGTTTAAG 59.017 43.478 0.00 0.00 26.79 1.85
5824 7092 2.850647 GGTACGCGTTTCACATACTCTC 59.149 50.000 20.78 0.00 0.00 3.20
5825 7093 2.229543 TGGTACGCGTTTCACATACTCT 59.770 45.455 20.78 0.00 0.00 3.24
5826 7094 2.598589 TGGTACGCGTTTCACATACTC 58.401 47.619 20.78 2.41 0.00 2.59
5827 7095 2.728690 TGGTACGCGTTTCACATACT 57.271 45.000 20.78 0.00 0.00 2.12
5828 7096 3.368539 TGAATGGTACGCGTTTCACATAC 59.631 43.478 20.78 7.40 0.00 2.39
5829 7097 3.586892 TGAATGGTACGCGTTTCACATA 58.413 40.909 20.78 3.00 0.00 2.29
5830 7098 2.418692 TGAATGGTACGCGTTTCACAT 58.581 42.857 20.78 14.13 0.00 3.21
5831 7099 1.867166 TGAATGGTACGCGTTTCACA 58.133 45.000 20.78 12.27 0.00 3.58
5832 7100 3.124636 AGAATGAATGGTACGCGTTTCAC 59.875 43.478 22.31 13.40 31.45 3.18
5833 7101 3.331150 AGAATGAATGGTACGCGTTTCA 58.669 40.909 20.78 21.65 33.06 2.69
5834 7102 4.565564 AGTAGAATGAATGGTACGCGTTTC 59.434 41.667 20.78 16.07 0.00 2.78
5837 7105 3.795623 AGTAGAATGAATGGTACGCGT 57.204 42.857 19.17 19.17 0.00 6.01
5875 7143 2.496070 GGCAGGGGTAATCCTTTTTGTC 59.504 50.000 0.00 0.00 34.31 3.18
5876 7144 2.111792 AGGCAGGGGTAATCCTTTTTGT 59.888 45.455 0.00 0.00 34.31 2.83
5877 7145 2.820178 AGGCAGGGGTAATCCTTTTTG 58.180 47.619 0.00 0.00 34.31 2.44
5892 7163 3.688272 CATCGCTTTGATACAAAGGCAG 58.312 45.455 20.59 11.74 34.83 4.85
5901 7172 1.002142 GCTGCATGCATCGCTTTGATA 60.002 47.619 22.97 0.00 42.31 2.15
6011 7285 4.640201 GGCATCTAGTTCTATGTTTTGCCA 59.360 41.667 5.30 0.00 44.96 4.92
6042 7316 1.065709 GGCGGTCCAACAAGAGGATAA 60.066 52.381 0.00 0.00 37.52 1.75
6072 7346 3.131755 GGTAGCACGGGATAACTACAACT 59.868 47.826 0.00 0.00 37.36 3.16
6080 7354 1.027357 GAGACGGTAGCACGGGATAA 58.973 55.000 0.00 0.00 38.39 1.75
6085 7359 0.108804 AATGTGAGACGGTAGCACGG 60.109 55.000 7.91 0.00 38.39 4.94
6118 7392 2.421952 GGAAGCCAAGGAGCATATGACA 60.422 50.000 6.97 0.00 34.23 3.58
6160 7434 0.249120 CAACTGGCTGGATCCGTACA 59.751 55.000 7.39 4.60 0.00 2.90
6190 7464 6.450845 ACATCACAAATATTTTTGCACGTG 57.549 33.333 12.28 12.28 45.01 4.49
6218 7492 6.359617 GTCAAAATGACGTGATTTGTAACAGG 59.640 38.462 13.80 0.00 37.67 4.00
6262 7536 3.002791 CAACTCGGAGTGTGTGCATTAT 58.997 45.455 12.12 0.00 33.16 1.28
6282 7556 4.323417 CATAAGTTAGGGGCGCATATTCA 58.677 43.478 10.83 0.00 0.00 2.57
6294 7568 2.963782 ACGGGGTAGAGCATAAGTTAGG 59.036 50.000 0.00 0.00 0.00 2.69
6303 7577 0.905809 TGGCTAAACGGGGTAGAGCA 60.906 55.000 0.00 0.00 34.76 4.26
6337 7611 7.629866 GCTTTTTACCACCTGATACCATAAACC 60.630 40.741 0.00 0.00 0.00 3.27
6341 7615 5.883673 GTGCTTTTTACCACCTGATACCATA 59.116 40.000 0.00 0.00 0.00 2.74
6361 7643 2.620112 GGCGAACTGTGCATGTGCT 61.620 57.895 6.55 0.00 42.66 4.40
6391 7673 6.522625 TTTGTTTCTTGATTGTCCACTTGA 57.477 33.333 0.00 0.00 0.00 3.02
6458 7789 2.817258 CTGGCAAAACGTAATTGGGAGA 59.183 45.455 13.84 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.