Multiple sequence alignment - TraesCS2A01G306300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G306300 chr2A 100.000 2801 0 0 1 2801 526743448 526740648 0.000000e+00 5173.0
1 TraesCS2A01G306300 chr2A 93.651 63 4 0 42 104 482704264 482704202 8.260000e-16 95.3
2 TraesCS2A01G306300 chr2D 93.771 1172 33 11 865 2016 390418598 390417447 0.000000e+00 1724.0
3 TraesCS2A01G306300 chr2D 89.985 669 23 13 2156 2801 390417449 390416802 0.000000e+00 824.0
4 TraesCS2A01G306300 chr2D 85.158 539 52 15 105 624 390419157 390418628 6.870000e-146 527.0
5 TraesCS2A01G306300 chr2D 87.143 210 23 3 662 868 483629307 483629099 4.660000e-58 235.0
6 TraesCS2A01G306300 chr2D 85.841 113 16 0 2053 2165 89543045 89543157 1.360000e-23 121.0
7 TraesCS2A01G306300 chr2B 91.949 944 32 15 865 1795 461576496 461575584 0.000000e+00 1282.0
8 TraesCS2A01G306300 chr2B 90.047 422 24 10 2387 2801 461572170 461571760 5.310000e-147 531.0
9 TraesCS2A01G306300 chr2B 87.793 213 23 2 659 868 118159907 118160119 2.150000e-61 246.0
10 TraesCS2A01G306300 chr2B 86.190 210 26 2 662 868 672043617 672043408 1.010000e-54 224.0
11 TraesCS2A01G306300 chr2B 92.254 142 5 3 1861 1996 461575587 461575446 2.200000e-46 196.0
12 TraesCS2A01G306300 chr2B 96.970 33 1 0 4 36 141575377 141575345 3.900000e-04 56.5
13 TraesCS2A01G306300 chr3D 88.263 213 22 2 659 868 193623883 193624095 4.630000e-63 252.0
14 TraesCS2A01G306300 chr5D 88.095 210 22 2 662 868 209218935 209218726 2.150000e-61 246.0
15 TraesCS2A01G306300 chr5D 93.651 63 4 0 42 104 366958491 366958429 8.260000e-16 95.3
16 TraesCS2A01G306300 chr5D 93.651 63 4 0 42 104 440339235 440339297 8.260000e-16 95.3
17 TraesCS2A01G306300 chr5D 93.651 63 4 0 42 104 556572992 556572930 8.260000e-16 95.3
18 TraesCS2A01G306300 chr4A 87.204 211 24 2 662 869 360658309 360658099 1.300000e-58 237.0
19 TraesCS2A01G306300 chr4A 95.172 145 7 0 2016 2160 17747506 17747362 2.170000e-56 230.0
20 TraesCS2A01G306300 chr4A 95.070 142 7 0 2011 2152 595828798 595828939 1.010000e-54 224.0
21 TraesCS2A01G306300 chr3B 88.384 198 18 4 676 869 830364524 830364328 1.680000e-57 233.0
22 TraesCS2A01G306300 chr3B 88.384 198 18 4 676 869 830653226 830653030 1.680000e-57 233.0
23 TraesCS2A01G306300 chr3A 85.915 213 24 5 659 869 91469730 91469938 3.630000e-54 222.0
24 TraesCS2A01G306300 chr3A 92.424 66 5 0 42 107 616970282 616970217 8.260000e-16 95.3
25 TraesCS2A01G306300 chr7B 95.620 137 6 0 2016 2152 138874548 138874412 1.310000e-53 220.0
26 TraesCS2A01G306300 chr7B 92.188 64 5 0 42 105 45141149 45141086 1.070000e-14 91.6
27 TraesCS2A01G306300 chr1D 93.750 64 4 0 42 105 266216979 266217042 2.300000e-16 97.1
28 TraesCS2A01G306300 chr6B 93.651 63 4 0 42 104 13730165 13730103 8.260000e-16 95.3
29 TraesCS2A01G306300 chr5B 93.651 63 4 0 42 104 111668301 111668363 8.260000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G306300 chr2A 526740648 526743448 2800 True 5173.000000 5173 100.000000 1 2801 1 chr2A.!!$R2 2800
1 TraesCS2A01G306300 chr2D 390416802 390419157 2355 True 1025.000000 1724 89.638000 105 2801 3 chr2D.!!$R2 2696
2 TraesCS2A01G306300 chr2B 461571760 461576496 4736 True 669.666667 1282 91.416667 865 2801 3 chr2B.!!$R3 1936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.178973 TCGGACACAACCCTCTCAGA 60.179 55.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2107 0.10852 TACTTAAAGCCCGCTCCGTG 60.109 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.396590 TTCTGTCCCGGTTCATAAGC 57.603 50.000 0.00 0.00 0.00 3.09
28 29 2.234300 GGTTCATAAGCGAATCGGGA 57.766 50.000 4.35 0.00 0.00 5.14
29 30 1.865340 GGTTCATAAGCGAATCGGGAC 59.135 52.381 4.35 0.00 0.00 4.46
30 31 2.483188 GGTTCATAAGCGAATCGGGACT 60.483 50.000 4.35 0.00 0.00 3.85
31 32 3.243636 GGTTCATAAGCGAATCGGGACTA 60.244 47.826 4.35 0.00 0.00 2.59
32 33 3.917329 TCATAAGCGAATCGGGACTAG 57.083 47.619 4.35 0.00 0.00 2.57
33 34 3.483421 TCATAAGCGAATCGGGACTAGA 58.517 45.455 4.35 0.00 0.00 2.43
34 35 3.502595 TCATAAGCGAATCGGGACTAGAG 59.497 47.826 4.35 0.00 0.00 2.43
35 36 1.033574 AAGCGAATCGGGACTAGAGG 58.966 55.000 4.35 0.00 0.00 3.69
36 37 0.824182 AGCGAATCGGGACTAGAGGG 60.824 60.000 4.35 0.00 0.00 4.30
37 38 1.108132 GCGAATCGGGACTAGAGGGT 61.108 60.000 4.35 0.00 0.00 4.34
38 39 0.953003 CGAATCGGGACTAGAGGGTC 59.047 60.000 0.00 0.00 35.66 4.46
39 40 0.953003 GAATCGGGACTAGAGGGTCG 59.047 60.000 0.00 0.00 37.12 4.79
40 41 0.467659 AATCGGGACTAGAGGGTCGG 60.468 60.000 0.00 0.00 37.12 4.79
41 42 2.354755 ATCGGGACTAGAGGGTCGGG 62.355 65.000 0.00 0.00 37.12 5.14
42 43 2.123382 GGGACTAGAGGGTCGGGG 60.123 72.222 0.00 0.00 37.12 5.73
43 44 2.688538 GGACTAGAGGGTCGGGGT 59.311 66.667 0.00 0.00 37.12 4.95
44 45 1.001376 GGACTAGAGGGTCGGGGTT 59.999 63.158 0.00 0.00 37.12 4.11
45 46 1.042003 GGACTAGAGGGTCGGGGTTC 61.042 65.000 0.00 0.00 37.12 3.62
46 47 1.001376 ACTAGAGGGTCGGGGTTCC 59.999 63.158 0.00 0.00 0.00 3.62
47 48 1.001248 CTAGAGGGTCGGGGTTCCA 59.999 63.158 0.00 0.00 0.00 3.53
48 49 1.001248 TAGAGGGTCGGGGTTCCAG 59.999 63.158 0.00 0.00 0.00 3.86
49 50 1.512201 TAGAGGGTCGGGGTTCCAGA 61.512 60.000 0.00 0.00 0.00 3.86
50 51 1.916777 GAGGGTCGGGGTTCCAGAA 60.917 63.158 0.00 0.00 0.00 3.02
51 52 2.181445 GAGGGTCGGGGTTCCAGAAC 62.181 65.000 1.77 1.77 40.45 3.01
76 77 3.064900 GCTAATGGGCCTCTGGAATAG 57.935 52.381 4.53 0.00 0.00 1.73
77 78 2.290577 GCTAATGGGCCTCTGGAATAGG 60.291 54.545 4.53 0.00 37.17 2.57
78 79 1.152649 AATGGGCCTCTGGAATAGGG 58.847 55.000 4.53 0.00 34.46 3.53
79 80 0.271927 ATGGGCCTCTGGAATAGGGA 59.728 55.000 4.53 0.00 34.46 4.20
80 81 0.694444 TGGGCCTCTGGAATAGGGAC 60.694 60.000 4.53 0.00 34.46 4.46
81 82 0.694444 GGGCCTCTGGAATAGGGACA 60.694 60.000 0.84 0.00 34.46 4.02
82 83 1.213296 GGCCTCTGGAATAGGGACAA 58.787 55.000 0.00 0.00 34.46 3.18
83 84 1.564348 GGCCTCTGGAATAGGGACAAA 59.436 52.381 0.00 0.00 34.46 2.83
84 85 2.175715 GGCCTCTGGAATAGGGACAAAT 59.824 50.000 0.00 0.00 34.46 2.32
85 86 3.217626 GCCTCTGGAATAGGGACAAATG 58.782 50.000 0.00 0.00 34.46 2.32
86 87 3.825328 CCTCTGGAATAGGGACAAATGG 58.175 50.000 0.00 0.00 0.00 3.16
87 88 3.217626 CTCTGGAATAGGGACAAATGGC 58.782 50.000 0.00 0.00 0.00 4.40
88 89 2.091885 TCTGGAATAGGGACAAATGGCC 60.092 50.000 0.00 0.00 44.61 5.36
95 96 3.507597 GGACAAATGGCCCGTTTTC 57.492 52.632 0.00 0.78 37.19 2.29
96 97 0.966179 GGACAAATGGCCCGTTTTCT 59.034 50.000 0.00 0.00 37.19 2.52
97 98 2.164338 GGACAAATGGCCCGTTTTCTA 58.836 47.619 0.00 0.00 37.19 2.10
98 99 2.094906 GGACAAATGGCCCGTTTTCTAC 60.095 50.000 0.00 0.00 37.19 2.59
99 100 2.817844 GACAAATGGCCCGTTTTCTACT 59.182 45.455 0.00 0.00 0.00 2.57
100 101 4.004982 GACAAATGGCCCGTTTTCTACTA 58.995 43.478 0.00 0.00 0.00 1.82
101 102 4.007659 ACAAATGGCCCGTTTTCTACTAG 58.992 43.478 0.00 0.00 0.00 2.57
102 103 3.994931 AATGGCCCGTTTTCTACTAGT 57.005 42.857 0.00 0.00 0.00 2.57
103 104 2.754946 TGGCCCGTTTTCTACTAGTG 57.245 50.000 5.39 0.00 0.00 2.74
108 109 2.289195 CCCGTTTTCTACTAGTGCACCA 60.289 50.000 14.63 0.00 0.00 4.17
121 122 3.499737 CACCACGGATCCAAGCGC 61.500 66.667 13.41 0.00 0.00 5.92
122 123 3.706373 ACCACGGATCCAAGCGCT 61.706 61.111 13.41 2.64 0.00 5.92
135 136 0.893270 AAGCGCTATTTGTGTGGGCA 60.893 50.000 12.05 0.00 41.21 5.36
152 153 0.679640 GCACAATGGATTCCCACCGA 60.680 55.000 0.00 0.00 46.98 4.69
170 171 1.369625 GAATCAACTCGGATTGCGGT 58.630 50.000 0.00 0.00 37.61 5.68
172 173 0.806102 ATCAACTCGGATTGCGGTCG 60.806 55.000 0.00 0.00 0.00 4.79
179 180 1.669760 GGATTGCGGTCGGACACAA 60.670 57.895 15.33 15.33 0.00 3.33
189 190 0.178973 TCGGACACAACCCTCTCAGA 60.179 55.000 0.00 0.00 0.00 3.27
197 198 3.452786 CCCTCTCAGAAGCGGCGA 61.453 66.667 12.98 0.00 0.00 5.54
211 212 2.125512 GCGAAGAGCCACACGGAT 60.126 61.111 0.00 0.00 40.81 4.18
212 213 2.456119 GCGAAGAGCCACACGGATG 61.456 63.158 0.00 0.00 40.81 3.51
230 231 0.626382 TGGTCATCTCCTCCTCGTCT 59.374 55.000 0.00 0.00 0.00 4.18
233 234 1.946768 GTCATCTCCTCCTCGTCTCTG 59.053 57.143 0.00 0.00 0.00 3.35
262 264 3.587061 ACAAGGTCCCTGTCAATGTATCA 59.413 43.478 0.00 0.00 0.00 2.15
308 310 0.247460 CCGTCATGCAGGAGAAGACA 59.753 55.000 0.00 0.00 0.00 3.41
318 320 2.098934 CAGGAGAAGACAGGAGATCACG 59.901 54.545 0.00 0.00 0.00 4.35
328 330 3.453070 GAGATCACGGGCCAGGAGC 62.453 68.421 8.08 2.47 42.60 4.70
348 350 2.501223 TTAGGAGCGGCGTGAAGTGG 62.501 60.000 9.37 0.00 0.00 4.00
349 351 4.373116 GGAGCGGCGTGAAGTGGA 62.373 66.667 9.37 0.00 0.00 4.02
353 355 1.373748 GCGGCGTGAAGTGGAGTAA 60.374 57.895 9.37 0.00 0.00 2.24
360 362 3.190953 GCGTGAAGTGGAGTAACTAGAGT 59.809 47.826 0.00 0.00 0.00 3.24
402 404 4.494484 TGAACGAACATATGTGAGGTCAG 58.506 43.478 20.91 9.92 31.53 3.51
412 414 1.074090 TGAGGTCAGGGTGGGTCAA 60.074 57.895 0.00 0.00 0.00 3.18
417 419 0.537371 GTCAGGGTGGGTCAAACTGG 60.537 60.000 0.00 0.00 0.00 4.00
418 420 1.228552 CAGGGTGGGTCAAACTGGG 60.229 63.158 0.00 0.00 0.00 4.45
419 421 2.600470 GGGTGGGTCAAACTGGGC 60.600 66.667 0.00 0.00 0.00 5.36
421 423 2.983592 GTGGGTCAAACTGGGCCG 60.984 66.667 0.00 0.00 0.00 6.13
422 424 4.278513 TGGGTCAAACTGGGCCGG 62.279 66.667 11.83 11.83 0.00 6.13
423 425 4.280019 GGGTCAAACTGGGCCGGT 62.280 66.667 13.59 13.59 0.00 5.28
425 427 2.265904 GGTCAAACTGGGCCGGTTC 61.266 63.158 30.01 17.78 31.05 3.62
426 428 2.114411 TCAAACTGGGCCGGTTCC 59.886 61.111 30.01 6.13 31.05 3.62
428 430 3.562232 AAACTGGGCCGGTTCCGA 61.562 61.111 30.01 0.00 31.05 4.55
429 431 3.837570 AAACTGGGCCGGTTCCGAC 62.838 63.158 30.01 0.24 31.05 4.79
432 434 4.402528 TGGGCCGGTTCCGACATG 62.403 66.667 13.08 0.00 0.00 3.21
448 468 1.006998 ACATGGCATATGTGGGGTTGT 59.993 47.619 0.00 0.00 0.00 3.32
463 483 1.770110 TTGTGGTGGGTCAGCCTCT 60.770 57.895 0.00 0.00 34.45 3.69
514 534 3.048337 GGTCAGTCCGGAAACATAACA 57.952 47.619 5.23 0.00 0.00 2.41
515 535 2.740447 GGTCAGTCCGGAAACATAACAC 59.260 50.000 5.23 0.00 0.00 3.32
522 542 2.686235 CGGAAACATAACACCGGTACA 58.314 47.619 6.87 0.00 41.41 2.90
526 546 4.756135 GGAAACATAACACCGGTACAAGAA 59.244 41.667 6.87 0.00 0.00 2.52
530 550 0.250597 AACACCGGTACAAGAAGGGC 60.251 55.000 6.87 0.00 0.00 5.19
531 551 1.373435 CACCGGTACAAGAAGGGCA 59.627 57.895 6.87 0.00 0.00 5.36
537 557 0.678048 GTACAAGAAGGGCAGCTGGG 60.678 60.000 17.12 0.00 0.00 4.45
541 561 1.504275 AAGAAGGGCAGCTGGGTCAT 61.504 55.000 17.12 0.00 0.00 3.06
543 563 2.202236 GAAGGGCAGCTGGGTCATGA 62.202 60.000 17.12 0.00 0.00 3.07
552 572 3.377485 CAGCTGGGTCATGATTTTCTGAG 59.623 47.826 5.57 0.00 0.00 3.35
554 574 3.626670 GCTGGGTCATGATTTTCTGAGAG 59.373 47.826 0.00 0.00 0.00 3.20
555 575 4.624843 GCTGGGTCATGATTTTCTGAGAGA 60.625 45.833 0.00 0.00 0.00 3.10
556 576 5.682659 CTGGGTCATGATTTTCTGAGAGAT 58.317 41.667 0.00 0.00 0.00 2.75
557 577 5.678583 TGGGTCATGATTTTCTGAGAGATC 58.321 41.667 0.00 2.17 0.00 2.75
558 578 5.190330 TGGGTCATGATTTTCTGAGAGATCA 59.810 40.000 11.35 11.35 33.50 2.92
559 579 5.526846 GGGTCATGATTTTCTGAGAGATCAC 59.473 44.000 11.23 0.00 31.94 3.06
560 580 6.347696 GGTCATGATTTTCTGAGAGATCACT 58.652 40.000 11.23 0.00 31.94 3.41
561 581 6.258287 GGTCATGATTTTCTGAGAGATCACTG 59.742 42.308 11.23 10.75 31.94 3.66
562 582 7.040494 GTCATGATTTTCTGAGAGATCACTGA 58.960 38.462 11.23 12.19 31.94 3.41
563 583 7.010367 GTCATGATTTTCTGAGAGATCACTGAC 59.990 40.741 20.56 20.56 34.28 3.51
564 584 5.728471 TGATTTTCTGAGAGATCACTGACC 58.272 41.667 0.00 0.00 0.00 4.02
565 585 5.246883 TGATTTTCTGAGAGATCACTGACCA 59.753 40.000 0.00 0.00 0.00 4.02
605 625 1.280982 CATAACACGAGCGCATGTCT 58.719 50.000 11.47 5.01 0.00 3.41
628 661 9.435688 GTCTTGTTTATGCCTCCAAATTAATTT 57.564 29.630 7.64 7.64 0.00 1.82
639 672 3.427503 CCAAATTAATTTGCTCGGTCGCT 60.428 43.478 28.17 0.00 44.32 4.93
640 673 4.201871 CCAAATTAATTTGCTCGGTCGCTA 60.202 41.667 28.17 0.00 44.32 4.26
641 674 5.505654 CCAAATTAATTTGCTCGGTCGCTAT 60.506 40.000 28.17 0.00 44.32 2.97
642 675 4.992381 ATTAATTTGCTCGGTCGCTATC 57.008 40.909 0.00 0.00 0.00 2.08
643 676 2.309528 AATTTGCTCGGTCGCTATCA 57.690 45.000 0.00 0.00 0.00 2.15
644 677 2.309528 ATTTGCTCGGTCGCTATCAA 57.690 45.000 0.00 0.00 0.00 2.57
645 678 2.087501 TTTGCTCGGTCGCTATCAAA 57.912 45.000 0.00 0.00 0.00 2.69
646 679 2.087501 TTGCTCGGTCGCTATCAAAA 57.912 45.000 0.00 0.00 0.00 2.44
647 680 2.087501 TGCTCGGTCGCTATCAAAAA 57.912 45.000 0.00 0.00 0.00 1.94
648 681 2.627945 TGCTCGGTCGCTATCAAAAAT 58.372 42.857 0.00 0.00 0.00 1.82
649 682 3.787785 TGCTCGGTCGCTATCAAAAATA 58.212 40.909 0.00 0.00 0.00 1.40
650 683 3.554324 TGCTCGGTCGCTATCAAAAATAC 59.446 43.478 0.00 0.00 0.00 1.89
651 684 3.554324 GCTCGGTCGCTATCAAAAATACA 59.446 43.478 0.00 0.00 0.00 2.29
652 685 4.211374 GCTCGGTCGCTATCAAAAATACAT 59.789 41.667 0.00 0.00 0.00 2.29
653 686 5.277345 GCTCGGTCGCTATCAAAAATACATT 60.277 40.000 0.00 0.00 0.00 2.71
654 687 6.671614 TCGGTCGCTATCAAAAATACATTT 57.328 33.333 0.00 0.00 0.00 2.32
655 688 7.079182 TCGGTCGCTATCAAAAATACATTTT 57.921 32.000 0.00 0.00 41.93 1.82
669 702 9.729281 AAAAATACATTTTGCATCTTTCCTCAT 57.271 25.926 0.86 0.00 39.73 2.90
671 704 9.807649 AAATACATTTTGCATCTTTCCTCATAC 57.192 29.630 0.00 0.00 0.00 2.39
672 705 8.757982 ATACATTTTGCATCTTTCCTCATACT 57.242 30.769 0.00 0.00 0.00 2.12
673 706 9.851686 ATACATTTTGCATCTTTCCTCATACTA 57.148 29.630 0.00 0.00 0.00 1.82
674 707 8.757982 ACATTTTGCATCTTTCCTCATACTAT 57.242 30.769 0.00 0.00 0.00 2.12
675 708 8.844244 ACATTTTGCATCTTTCCTCATACTATC 58.156 33.333 0.00 0.00 0.00 2.08
676 709 8.843262 CATTTTGCATCTTTCCTCATACTATCA 58.157 33.333 0.00 0.00 0.00 2.15
677 710 8.806429 TTTTGCATCTTTCCTCATACTATCAA 57.194 30.769 0.00 0.00 0.00 2.57
678 711 8.985315 TTTGCATCTTTCCTCATACTATCAAT 57.015 30.769 0.00 0.00 0.00 2.57
679 712 8.985315 TTGCATCTTTCCTCATACTATCAATT 57.015 30.769 0.00 0.00 0.00 2.32
680 713 8.985315 TGCATCTTTCCTCATACTATCAATTT 57.015 30.769 0.00 0.00 0.00 1.82
681 714 9.412460 TGCATCTTTCCTCATACTATCAATTTT 57.588 29.630 0.00 0.00 0.00 1.82
717 750 8.695456 ACATGTATGTAGTCATAATGACACTCA 58.305 33.333 0.00 0.00 42.13 3.41
730 763 9.994432 CATAATGACACTCAACTATTTTCTTCC 57.006 33.333 0.00 0.00 0.00 3.46
731 764 7.454260 AATGACACTCAACTATTTTCTTCCC 57.546 36.000 0.00 0.00 0.00 3.97
732 765 5.935945 TGACACTCAACTATTTTCTTCCCA 58.064 37.500 0.00 0.00 0.00 4.37
733 766 6.542821 TGACACTCAACTATTTTCTTCCCAT 58.457 36.000 0.00 0.00 0.00 4.00
734 767 7.004086 TGACACTCAACTATTTTCTTCCCATT 58.996 34.615 0.00 0.00 0.00 3.16
735 768 7.174946 TGACACTCAACTATTTTCTTCCCATTC 59.825 37.037 0.00 0.00 0.00 2.67
736 769 7.004086 ACACTCAACTATTTTCTTCCCATTCA 58.996 34.615 0.00 0.00 0.00 2.57
737 770 7.671398 ACACTCAACTATTTTCTTCCCATTCAT 59.329 33.333 0.00 0.00 0.00 2.57
738 771 8.526147 CACTCAACTATTTTCTTCCCATTCATT 58.474 33.333 0.00 0.00 0.00 2.57
739 772 8.743714 ACTCAACTATTTTCTTCCCATTCATTC 58.256 33.333 0.00 0.00 0.00 2.67
740 773 7.761409 TCAACTATTTTCTTCCCATTCATTCG 58.239 34.615 0.00 0.00 0.00 3.34
741 774 7.393234 TCAACTATTTTCTTCCCATTCATTCGT 59.607 33.333 0.00 0.00 0.00 3.85
742 775 7.703058 ACTATTTTCTTCCCATTCATTCGTT 57.297 32.000 0.00 0.00 0.00 3.85
743 776 7.538575 ACTATTTTCTTCCCATTCATTCGTTG 58.461 34.615 0.00 0.00 0.00 4.10
744 777 3.848272 TTCTTCCCATTCATTCGTTGC 57.152 42.857 0.00 0.00 0.00 4.17
745 778 2.789213 TCTTCCCATTCATTCGTTGCA 58.211 42.857 0.00 0.00 0.00 4.08
746 779 3.355378 TCTTCCCATTCATTCGTTGCAT 58.645 40.909 0.00 0.00 0.00 3.96
747 780 3.129113 TCTTCCCATTCATTCGTTGCATG 59.871 43.478 0.00 0.00 0.00 4.06
748 781 1.134753 TCCCATTCATTCGTTGCATGC 59.865 47.619 11.82 11.82 28.73 4.06
749 782 1.135527 CCCATTCATTCGTTGCATGCT 59.864 47.619 20.33 0.00 28.73 3.79
750 783 2.417651 CCCATTCATTCGTTGCATGCTT 60.418 45.455 20.33 0.00 28.73 3.91
751 784 3.181488 CCCATTCATTCGTTGCATGCTTA 60.181 43.478 20.33 3.93 28.73 3.09
752 785 4.500205 CCCATTCATTCGTTGCATGCTTAT 60.500 41.667 20.33 2.21 28.73 1.73
753 786 4.443063 CCATTCATTCGTTGCATGCTTATG 59.557 41.667 20.33 12.23 28.73 1.90
754 787 4.961435 TTCATTCGTTGCATGCTTATGA 57.039 36.364 20.33 14.34 0.00 2.15
755 788 5.503662 TTCATTCGTTGCATGCTTATGAT 57.496 34.783 20.33 5.00 0.00 2.45
756 789 4.851010 TCATTCGTTGCATGCTTATGATG 58.149 39.130 20.33 16.32 0.00 3.07
757 790 4.336153 TCATTCGTTGCATGCTTATGATGT 59.664 37.500 20.33 7.10 0.00 3.06
758 791 5.526846 TCATTCGTTGCATGCTTATGATGTA 59.473 36.000 20.33 3.94 0.00 2.29
759 792 6.205270 TCATTCGTTGCATGCTTATGATGTAT 59.795 34.615 20.33 5.97 0.00 2.29
760 793 6.375945 TTCGTTGCATGCTTATGATGTATT 57.624 33.333 20.33 0.00 0.00 1.89
761 794 7.489574 TTCGTTGCATGCTTATGATGTATTA 57.510 32.000 20.33 0.00 0.00 0.98
762 795 7.489574 TCGTTGCATGCTTATGATGTATTAA 57.510 32.000 20.33 0.00 0.00 1.40
763 796 8.098220 TCGTTGCATGCTTATGATGTATTAAT 57.902 30.769 20.33 0.00 0.00 1.40
764 797 8.016801 TCGTTGCATGCTTATGATGTATTAATG 58.983 33.333 20.33 5.42 0.00 1.90
765 798 8.016801 CGTTGCATGCTTATGATGTATTAATGA 58.983 33.333 20.33 0.00 0.00 2.57
766 799 9.121517 GTTGCATGCTTATGATGTATTAATGAC 57.878 33.333 20.33 0.00 0.00 3.06
767 800 7.819644 TGCATGCTTATGATGTATTAATGACC 58.180 34.615 20.33 0.00 0.00 4.02
768 801 7.666804 TGCATGCTTATGATGTATTAATGACCT 59.333 33.333 20.33 0.00 0.00 3.85
769 802 8.180267 GCATGCTTATGATGTATTAATGACCTC 58.820 37.037 11.37 0.00 0.00 3.85
770 803 7.889589 TGCTTATGATGTATTAATGACCTCG 57.110 36.000 0.00 0.00 0.00 4.63
771 804 6.873605 TGCTTATGATGTATTAATGACCTCGG 59.126 38.462 0.00 0.00 0.00 4.63
772 805 6.874134 GCTTATGATGTATTAATGACCTCGGT 59.126 38.462 0.00 0.00 0.00 4.69
773 806 7.387948 GCTTATGATGTATTAATGACCTCGGTT 59.612 37.037 0.00 0.00 0.00 4.44
774 807 9.923143 CTTATGATGTATTAATGACCTCGGTTA 57.077 33.333 0.00 0.00 0.00 2.85
776 809 8.603242 ATGATGTATTAATGACCTCGGTTAAC 57.397 34.615 0.00 0.00 0.00 2.01
777 810 7.557724 TGATGTATTAATGACCTCGGTTAACA 58.442 34.615 8.10 0.00 0.00 2.41
778 811 8.041919 TGATGTATTAATGACCTCGGTTAACAA 58.958 33.333 8.10 0.00 0.00 2.83
779 812 7.837202 TGTATTAATGACCTCGGTTAACAAG 57.163 36.000 8.10 4.20 0.00 3.16
780 813 7.613585 TGTATTAATGACCTCGGTTAACAAGA 58.386 34.615 8.10 5.45 0.00 3.02
781 814 8.095792 TGTATTAATGACCTCGGTTAACAAGAA 58.904 33.333 8.10 0.00 0.00 2.52
782 815 7.989416 ATTAATGACCTCGGTTAACAAGAAA 57.011 32.000 8.10 0.00 0.00 2.52
783 816 7.804843 TTAATGACCTCGGTTAACAAGAAAA 57.195 32.000 8.10 0.00 0.00 2.29
784 817 6.702716 AATGACCTCGGTTAACAAGAAAAA 57.297 33.333 8.10 0.00 0.00 1.94
842 875 8.153479 TGATATGTGTAATATGAGTTTGTGGC 57.847 34.615 0.00 0.00 0.00 5.01
843 876 5.835113 ATGTGTAATATGAGTTTGTGGCC 57.165 39.130 0.00 0.00 0.00 5.36
844 877 4.917385 TGTGTAATATGAGTTTGTGGCCT 58.083 39.130 3.32 0.00 0.00 5.19
845 878 5.321102 TGTGTAATATGAGTTTGTGGCCTT 58.679 37.500 3.32 0.00 0.00 4.35
846 879 5.182950 TGTGTAATATGAGTTTGTGGCCTTG 59.817 40.000 3.32 0.00 0.00 3.61
847 880 5.183140 GTGTAATATGAGTTTGTGGCCTTGT 59.817 40.000 3.32 0.00 0.00 3.16
848 881 6.373216 GTGTAATATGAGTTTGTGGCCTTGTA 59.627 38.462 3.32 0.00 0.00 2.41
849 882 7.067008 GTGTAATATGAGTTTGTGGCCTTGTAT 59.933 37.037 3.32 0.00 0.00 2.29
850 883 8.268605 TGTAATATGAGTTTGTGGCCTTGTATA 58.731 33.333 3.32 0.00 0.00 1.47
851 884 9.116067 GTAATATGAGTTTGTGGCCTTGTATAA 57.884 33.333 3.32 0.00 0.00 0.98
852 885 8.588290 AATATGAGTTTGTGGCCTTGTATAAA 57.412 30.769 3.32 0.00 0.00 1.40
853 886 6.909550 ATGAGTTTGTGGCCTTGTATAAAA 57.090 33.333 3.32 0.00 0.00 1.52
854 887 6.716934 TGAGTTTGTGGCCTTGTATAAAAA 57.283 33.333 3.32 0.00 0.00 1.94
886 919 6.959954 AGGAGTATGTATATATTGACCTGGCA 59.040 38.462 0.00 0.00 0.00 4.92
971 1005 2.746277 GCACGAGCCAACCGGATT 60.746 61.111 9.46 0.00 33.58 3.01
972 1006 2.750888 GCACGAGCCAACCGGATTC 61.751 63.158 9.46 0.00 33.58 2.52
973 1007 1.375396 CACGAGCCAACCGGATTCA 60.375 57.895 9.46 0.00 0.00 2.57
974 1008 1.375523 ACGAGCCAACCGGATTCAC 60.376 57.895 9.46 0.00 0.00 3.18
996 1030 2.910688 TCGCTTCATATCCTTGTCCC 57.089 50.000 0.00 0.00 0.00 4.46
997 1031 2.115427 TCGCTTCATATCCTTGTCCCA 58.885 47.619 0.00 0.00 0.00 4.37
998 1032 2.503765 TCGCTTCATATCCTTGTCCCAA 59.496 45.455 0.00 0.00 0.00 4.12
999 1033 2.614057 CGCTTCATATCCTTGTCCCAAC 59.386 50.000 0.00 0.00 0.00 3.77
1063 1097 5.489249 TGATTATCTATAGAGAGACCGCGT 58.511 41.667 8.70 0.00 34.35 6.01
1068 1102 1.448922 ATAGAGAGACCGCGTCCAGC 61.449 60.000 4.92 0.00 43.95 4.85
1156 1190 3.636231 CACCACCGCCTTCTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
1328 1362 1.106944 GGAGAGAGGAGGAGAAGCGG 61.107 65.000 0.00 0.00 0.00 5.52
1329 1363 0.106918 GAGAGAGGAGGAGAAGCGGA 60.107 60.000 0.00 0.00 0.00 5.54
1330 1364 0.555769 AGAGAGGAGGAGAAGCGGAT 59.444 55.000 0.00 0.00 0.00 4.18
1333 1367 1.115467 GAGGAGGAGAAGCGGATGAA 58.885 55.000 0.00 0.00 0.00 2.57
1386 1420 0.036388 GGCGAGGACAAGATGGACAA 60.036 55.000 0.00 0.00 0.00 3.18
1759 1805 4.517453 TGCAAATGCCGAGTAAGTTAAGTT 59.483 37.500 2.46 0.37 41.18 2.66
1760 1806 5.701750 TGCAAATGCCGAGTAAGTTAAGTTA 59.298 36.000 2.46 0.00 41.18 2.24
1823 1870 5.048852 GGTGTAACTAGAGTCCATCGGATAC 60.049 48.000 0.00 0.00 36.74 2.24
1834 1881 3.255888 TCCATCGGATACAGAGGAATTCG 59.744 47.826 0.00 0.00 0.00 3.34
1927 1979 2.233922 TCAAGACCCGTGGAGATTCTTC 59.766 50.000 0.00 0.00 0.00 2.87
1945 2001 3.069586 TCTTCTGTACCCACTTGTCACTG 59.930 47.826 0.00 0.00 0.00 3.66
1946 2002 1.070134 TCTGTACCCACTTGTCACTGC 59.930 52.381 0.00 0.00 0.00 4.40
1959 2016 1.748122 CACTGCCCAGGAGATGTGC 60.748 63.158 0.00 0.00 32.13 4.57
1986 2043 3.934579 TCATGAATCACGATCTTGTGGTG 59.065 43.478 0.00 0.00 40.31 4.17
1996 2053 6.978659 TCACGATCTTGTGGTGAATTATACTC 59.021 38.462 0.00 0.00 41.75 2.59
1997 2054 5.977725 ACGATCTTGTGGTGAATTATACTCG 59.022 40.000 0.00 0.00 0.00 4.18
1998 2055 6.183360 ACGATCTTGTGGTGAATTATACTCGA 60.183 38.462 0.00 0.00 0.00 4.04
1999 2056 6.142480 CGATCTTGTGGTGAATTATACTCGAC 59.858 42.308 0.00 0.00 0.00 4.20
2000 2057 5.337554 TCTTGTGGTGAATTATACTCGACG 58.662 41.667 0.00 0.00 0.00 5.12
2001 2058 4.036567 TGTGGTGAATTATACTCGACGG 57.963 45.455 0.00 0.00 0.00 4.79
2017 2074 5.009410 ACTCGACGGGTATGAGTTATTAAGG 59.991 44.000 0.00 0.00 39.87 2.69
2018 2075 3.985925 CGACGGGTATGAGTTATTAAGGC 59.014 47.826 0.00 0.00 0.00 4.35
2019 2076 4.313282 GACGGGTATGAGTTATTAAGGCC 58.687 47.826 0.00 0.00 0.00 5.19
2020 2077 3.243975 ACGGGTATGAGTTATTAAGGCCG 60.244 47.826 0.00 0.00 0.00 6.13
2021 2078 3.072211 GGGTATGAGTTATTAAGGCCGC 58.928 50.000 0.00 0.00 0.00 6.53
2022 2079 2.735134 GGTATGAGTTATTAAGGCCGCG 59.265 50.000 0.00 0.00 0.00 6.46
2023 2080 2.614829 ATGAGTTATTAAGGCCGCGT 57.385 45.000 4.92 0.00 0.00 6.01
2024 2081 2.389962 TGAGTTATTAAGGCCGCGTT 57.610 45.000 4.92 3.47 0.00 4.84
2025 2082 2.273557 TGAGTTATTAAGGCCGCGTTC 58.726 47.619 4.92 0.00 0.00 3.95
2026 2083 1.257155 GAGTTATTAAGGCCGCGTTCG 59.743 52.381 4.92 0.00 0.00 3.95
2036 2093 3.993103 CGCGTTCGGTAGTCATCC 58.007 61.111 0.00 0.00 0.00 3.51
2038 2095 2.228914 GCGTTCGGTAGTCATCCGC 61.229 63.158 0.00 0.00 46.49 5.54
2039 2096 1.432251 CGTTCGGTAGTCATCCGCT 59.568 57.895 0.00 0.00 46.49 5.52
2040 2097 0.866061 CGTTCGGTAGTCATCCGCTG 60.866 60.000 0.00 0.00 46.49 5.18
2041 2098 0.454600 GTTCGGTAGTCATCCGCTGA 59.545 55.000 0.00 0.00 46.49 4.26
2042 2099 0.738975 TTCGGTAGTCATCCGCTGAG 59.261 55.000 0.00 0.00 46.49 3.35
2043 2100 1.299468 CGGTAGTCATCCGCTGAGC 60.299 63.158 0.00 0.00 41.48 4.26
2044 2101 1.816537 GGTAGTCATCCGCTGAGCA 59.183 57.895 4.88 0.00 33.51 4.26
2045 2102 0.249238 GGTAGTCATCCGCTGAGCAG 60.249 60.000 4.88 0.00 33.51 4.24
2046 2103 0.741326 GTAGTCATCCGCTGAGCAGA 59.259 55.000 4.88 0.00 33.51 4.26
2047 2104 1.028130 TAGTCATCCGCTGAGCAGAG 58.972 55.000 4.88 0.00 33.51 3.35
2048 2105 1.882167 GTCATCCGCTGAGCAGAGC 60.882 63.158 4.88 0.00 33.51 4.09
2055 2112 4.426112 CTGAGCAGAGCGCACGGA 62.426 66.667 11.47 0.00 46.13 4.69
2056 2113 4.426112 TGAGCAGAGCGCACGGAG 62.426 66.667 11.47 0.00 46.13 4.63
2067 2124 3.486263 CACGGAGCGGGCTTTAAG 58.514 61.111 0.00 0.00 0.00 1.85
2068 2125 1.375523 CACGGAGCGGGCTTTAAGT 60.376 57.895 0.00 0.00 0.00 2.24
2069 2126 0.108520 CACGGAGCGGGCTTTAAGTA 60.109 55.000 0.00 0.00 0.00 2.24
2070 2127 0.609662 ACGGAGCGGGCTTTAAGTAA 59.390 50.000 0.00 0.00 0.00 2.24
2071 2128 1.004595 CGGAGCGGGCTTTAAGTAAC 58.995 55.000 0.00 0.00 0.00 2.50
2072 2129 1.405121 CGGAGCGGGCTTTAAGTAACT 60.405 52.381 0.00 0.00 0.00 2.24
2073 2130 2.277969 GGAGCGGGCTTTAAGTAACTC 58.722 52.381 0.00 0.00 0.00 3.01
2074 2131 2.093606 GGAGCGGGCTTTAAGTAACTCT 60.094 50.000 0.00 0.00 0.00 3.24
2075 2132 2.930682 GAGCGGGCTTTAAGTAACTCTG 59.069 50.000 0.00 0.00 0.00 3.35
2076 2133 2.302157 AGCGGGCTTTAAGTAACTCTGT 59.698 45.455 0.00 0.00 0.00 3.41
2077 2134 3.512724 AGCGGGCTTTAAGTAACTCTGTA 59.487 43.478 0.00 0.00 0.00 2.74
2078 2135 4.020839 AGCGGGCTTTAAGTAACTCTGTAA 60.021 41.667 0.00 0.00 0.00 2.41
2079 2136 4.692155 GCGGGCTTTAAGTAACTCTGTAAA 59.308 41.667 0.00 0.00 0.00 2.01
2080 2137 5.353400 GCGGGCTTTAAGTAACTCTGTAAAT 59.647 40.000 0.00 0.00 0.00 1.40
2081 2138 6.128090 GCGGGCTTTAAGTAACTCTGTAAATT 60.128 38.462 0.00 0.00 0.00 1.82
2082 2139 7.064966 GCGGGCTTTAAGTAACTCTGTAAATTA 59.935 37.037 0.00 0.00 0.00 1.40
2083 2140 9.106070 CGGGCTTTAAGTAACTCTGTAAATTAT 57.894 33.333 0.00 0.00 0.00 1.28
2112 2169 2.101770 GCTGAATTGCTGCTCCGC 59.898 61.111 0.00 0.00 38.32 5.54
2113 2170 2.404995 GCTGAATTGCTGCTCCGCT 61.405 57.895 0.00 0.00 38.32 5.52
2114 2171 1.720301 CTGAATTGCTGCTCCGCTC 59.280 57.895 0.00 0.00 0.00 5.03
2115 2172 1.712977 CTGAATTGCTGCTCCGCTCC 61.713 60.000 0.00 0.00 0.00 4.70
2116 2173 2.817423 GAATTGCTGCTCCGCTCCG 61.817 63.158 0.00 0.00 0.00 4.63
2151 2208 2.585247 GGAGGGAATCCGAACGCG 60.585 66.667 3.53 3.53 38.67 6.01
2152 2209 2.493030 GAGGGAATCCGAACGCGA 59.507 61.111 15.93 0.00 40.82 5.87
2153 2210 1.067582 GAGGGAATCCGAACGCGAT 59.932 57.895 15.93 0.00 40.82 4.58
2154 2211 0.940047 GAGGGAATCCGAACGCGATC 60.940 60.000 15.93 10.52 40.82 3.69
2155 2212 1.067582 GGGAATCCGAACGCGATCT 59.932 57.895 15.93 0.00 40.82 2.75
2156 2213 0.313043 GGGAATCCGAACGCGATCTA 59.687 55.000 15.93 1.22 40.82 1.98
2157 2214 1.269413 GGGAATCCGAACGCGATCTAA 60.269 52.381 15.93 0.83 40.82 2.10
2158 2215 2.052157 GGAATCCGAACGCGATCTAAG 58.948 52.381 15.93 1.98 40.82 2.18
2186 2243 5.808540 TCATGAGTGGCGTAAGTGTAATTAC 59.191 40.000 8.75 8.75 41.68 1.89
2235 2302 3.131755 CCCATTTTCTTGCATCTTCCTCC 59.868 47.826 0.00 0.00 0.00 4.30
2245 2312 4.326826 TGCATCTTCCTCCTTGTTTACTG 58.673 43.478 0.00 0.00 0.00 2.74
2259 2326 6.348786 CCTTGTTTACTGCGAGTAGTACTGTA 60.349 42.308 7.76 0.82 33.14 2.74
2268 2335 9.118300 ACTGCGAGTAGTACTGTAAAATATACT 57.882 33.333 7.76 0.00 0.00 2.12
2309 2376 4.756084 AAGAGCAACGGAAATTCTCTTG 57.244 40.909 3.30 0.00 41.12 3.02
2311 2378 3.499918 AGAGCAACGGAAATTCTCTTGTG 59.500 43.478 0.00 0.00 30.63 3.33
2323 2390 3.126001 TCTCTTGTGTCCATTGGTGAC 57.874 47.619 1.86 1.52 0.00 3.67
2324 2391 2.437651 TCTCTTGTGTCCATTGGTGACA 59.562 45.455 1.86 4.18 40.28 3.58
2350 2417 5.826586 ACTCAAGAGATATCGTGTCATGAC 58.173 41.667 19.27 19.27 0.00 3.06
2352 2419 6.066054 TCAAGAGATATCGTGTCATGACTC 57.934 41.667 25.55 20.76 0.00 3.36
2370 5114 5.354767 TGACTCATGACTACTCAATGATGC 58.645 41.667 0.00 0.00 0.00 3.91
2399 5496 1.831652 AAGCAGCTAAGTGGTCGCCT 61.832 55.000 0.00 0.00 0.00 5.52
2401 5498 1.517257 CAGCTAAGTGGTCGCCTCG 60.517 63.158 0.00 0.00 0.00 4.63
2422 5527 4.869861 TCGGTGACACAATGTAATGATCAG 59.130 41.667 8.08 0.00 0.00 2.90
2443 5548 1.214175 TGTGGAGGTTGCTTTCCAGAA 59.786 47.619 0.00 0.00 43.80 3.02
2482 5587 3.470709 CCAGATTCTGTATGCCGAACAT 58.529 45.455 12.54 0.00 43.18 2.71
2498 5603 3.551551 GAACATTTTTCACTCCGTTCCG 58.448 45.455 0.00 0.00 0.00 4.30
2625 5734 1.196127 CGTTCGTGGGGTAAAAAGCTC 59.804 52.381 0.00 0.00 0.00 4.09
2712 5822 1.068250 GCTCGGCTCACATAGGGAC 59.932 63.158 0.00 0.00 0.00 4.46
2713 5823 1.676678 GCTCGGCTCACATAGGGACA 61.677 60.000 0.00 0.00 0.00 4.02
2715 5825 1.227380 CGGCTCACATAGGGACAGC 60.227 63.158 0.00 0.00 0.00 4.40
2716 5826 1.907739 GGCTCACATAGGGACAGCA 59.092 57.895 0.00 0.00 0.00 4.41
2717 5827 0.179062 GGCTCACATAGGGACAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
2718 5828 0.826715 GCTCACATAGGGACAGCAGA 59.173 55.000 0.00 0.00 0.00 4.26
2783 5902 5.356470 ACCGTCTTGTACTACCTCATTACTC 59.644 44.000 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.404986 CGCTTATGAACCGGGACAGAA 60.405 52.381 6.32 8.19 0.00 3.02
1 2 0.174845 CGCTTATGAACCGGGACAGA 59.825 55.000 6.32 0.00 0.00 3.41
2 3 0.174845 TCGCTTATGAACCGGGACAG 59.825 55.000 6.32 0.00 0.00 3.51
3 4 0.609151 TTCGCTTATGAACCGGGACA 59.391 50.000 6.32 5.75 0.00 4.02
4 5 1.865340 GATTCGCTTATGAACCGGGAC 59.135 52.381 6.32 0.00 0.00 4.46
5 6 1.537348 CGATTCGCTTATGAACCGGGA 60.537 52.381 6.32 0.00 31.10 5.14
6 7 0.859232 CGATTCGCTTATGAACCGGG 59.141 55.000 6.32 0.00 31.10 5.73
8 9 0.859232 CCCGATTCGCTTATGAACCG 59.141 55.000 0.00 0.00 34.59 4.44
9 10 1.865340 GTCCCGATTCGCTTATGAACC 59.135 52.381 0.00 0.00 0.00 3.62
10 11 2.822764 AGTCCCGATTCGCTTATGAAC 58.177 47.619 0.00 0.00 0.00 3.18
11 12 3.887110 TCTAGTCCCGATTCGCTTATGAA 59.113 43.478 0.00 0.00 0.00 2.57
12 13 3.483421 TCTAGTCCCGATTCGCTTATGA 58.517 45.455 0.00 0.00 0.00 2.15
13 14 3.366476 CCTCTAGTCCCGATTCGCTTATG 60.366 52.174 0.00 0.00 0.00 1.90
14 15 2.820787 CCTCTAGTCCCGATTCGCTTAT 59.179 50.000 0.00 0.00 0.00 1.73
15 16 2.228059 CCTCTAGTCCCGATTCGCTTA 58.772 52.381 0.00 0.00 0.00 3.09
16 17 1.033574 CCTCTAGTCCCGATTCGCTT 58.966 55.000 0.00 0.00 0.00 4.68
17 18 0.824182 CCCTCTAGTCCCGATTCGCT 60.824 60.000 0.00 0.00 0.00 4.93
18 19 1.108132 ACCCTCTAGTCCCGATTCGC 61.108 60.000 0.00 0.00 0.00 4.70
19 20 0.953003 GACCCTCTAGTCCCGATTCG 59.047 60.000 0.00 0.00 0.00 3.34
20 21 0.953003 CGACCCTCTAGTCCCGATTC 59.047 60.000 0.00 0.00 32.91 2.52
21 22 0.467659 CCGACCCTCTAGTCCCGATT 60.468 60.000 0.00 0.00 32.91 3.34
22 23 1.150992 CCGACCCTCTAGTCCCGAT 59.849 63.158 0.00 0.00 32.91 4.18
23 24 2.593978 CCGACCCTCTAGTCCCGA 59.406 66.667 0.00 0.00 32.91 5.14
24 25 2.518825 CCCGACCCTCTAGTCCCG 60.519 72.222 0.00 0.00 32.91 5.14
25 26 2.123382 CCCCGACCCTCTAGTCCC 60.123 72.222 0.00 0.00 32.91 4.46
26 27 1.001376 AACCCCGACCCTCTAGTCC 59.999 63.158 0.00 0.00 32.91 3.85
27 28 1.042003 GGAACCCCGACCCTCTAGTC 61.042 65.000 0.00 0.00 0.00 2.59
28 29 1.001376 GGAACCCCGACCCTCTAGT 59.999 63.158 0.00 0.00 0.00 2.57
29 30 1.001248 TGGAACCCCGACCCTCTAG 59.999 63.158 0.00 0.00 34.29 2.43
30 31 1.001248 CTGGAACCCCGACCCTCTA 59.999 63.158 0.00 0.00 34.29 2.43
31 32 2.284699 CTGGAACCCCGACCCTCT 60.285 66.667 0.00 0.00 34.29 3.69
32 33 1.916777 TTCTGGAACCCCGACCCTC 60.917 63.158 0.00 0.00 34.29 4.30
33 34 2.206036 TTCTGGAACCCCGACCCT 59.794 61.111 0.00 0.00 34.29 4.34
34 35 2.350134 GTTCTGGAACCCCGACCC 59.650 66.667 2.35 0.00 35.36 4.46
56 57 2.290577 CCTATTCCAGAGGCCCATTAGC 60.291 54.545 0.00 0.00 0.00 3.09
57 58 2.307098 CCCTATTCCAGAGGCCCATTAG 59.693 54.545 0.00 0.00 32.18 1.73
58 59 2.089638 TCCCTATTCCAGAGGCCCATTA 60.090 50.000 0.00 0.00 32.18 1.90
59 60 1.152649 CCCTATTCCAGAGGCCCATT 58.847 55.000 0.00 0.00 32.18 3.16
60 61 0.271927 TCCCTATTCCAGAGGCCCAT 59.728 55.000 0.00 0.00 32.18 4.00
61 62 0.694444 GTCCCTATTCCAGAGGCCCA 60.694 60.000 0.00 0.00 32.18 5.36
62 63 0.694444 TGTCCCTATTCCAGAGGCCC 60.694 60.000 0.00 0.00 32.18 5.80
63 64 1.213296 TTGTCCCTATTCCAGAGGCC 58.787 55.000 0.00 0.00 32.18 5.19
64 65 3.217626 CATTTGTCCCTATTCCAGAGGC 58.782 50.000 0.00 0.00 32.18 4.70
65 66 3.825328 CCATTTGTCCCTATTCCAGAGG 58.175 50.000 0.00 0.00 0.00 3.69
66 67 3.217626 GCCATTTGTCCCTATTCCAGAG 58.782 50.000 0.00 0.00 0.00 3.35
67 68 2.091885 GGCCATTTGTCCCTATTCCAGA 60.092 50.000 0.00 0.00 0.00 3.86
68 69 2.310538 GGCCATTTGTCCCTATTCCAG 58.689 52.381 0.00 0.00 0.00 3.86
69 70 1.063266 GGGCCATTTGTCCCTATTCCA 60.063 52.381 4.39 0.00 39.46 3.53
70 71 1.704641 GGGCCATTTGTCCCTATTCC 58.295 55.000 4.39 0.00 39.46 3.01
71 72 1.318576 CGGGCCATTTGTCCCTATTC 58.681 55.000 4.39 0.00 40.41 1.75
72 73 0.629058 ACGGGCCATTTGTCCCTATT 59.371 50.000 4.39 0.00 40.41 1.73
73 74 0.629058 AACGGGCCATTTGTCCCTAT 59.371 50.000 4.39 0.00 40.41 2.57
74 75 0.406361 AAACGGGCCATTTGTCCCTA 59.594 50.000 4.39 0.00 40.41 3.53
75 76 0.471022 AAAACGGGCCATTTGTCCCT 60.471 50.000 4.39 0.00 40.41 4.20
76 77 0.037697 GAAAACGGGCCATTTGTCCC 60.038 55.000 4.39 0.00 39.17 4.46
77 78 0.966179 AGAAAACGGGCCATTTGTCC 59.034 50.000 4.39 0.00 0.00 4.02
78 79 2.817844 AGTAGAAAACGGGCCATTTGTC 59.182 45.455 4.39 0.72 0.00 3.18
79 80 2.871453 AGTAGAAAACGGGCCATTTGT 58.129 42.857 4.39 5.50 0.00 2.83
80 81 4.007659 ACTAGTAGAAAACGGGCCATTTG 58.992 43.478 4.39 0.00 0.00 2.32
81 82 4.007659 CACTAGTAGAAAACGGGCCATTT 58.992 43.478 4.39 3.87 0.00 2.32
82 83 3.606687 CACTAGTAGAAAACGGGCCATT 58.393 45.455 4.39 0.00 0.00 3.16
83 84 2.679930 GCACTAGTAGAAAACGGGCCAT 60.680 50.000 4.39 0.00 0.00 4.40
84 85 1.338389 GCACTAGTAGAAAACGGGCCA 60.338 52.381 4.39 0.00 0.00 5.36
85 86 1.338389 TGCACTAGTAGAAAACGGGCC 60.338 52.381 3.59 0.00 0.00 5.80
86 87 1.730612 GTGCACTAGTAGAAAACGGGC 59.269 52.381 10.32 0.00 0.00 6.13
87 88 2.289195 TGGTGCACTAGTAGAAAACGGG 60.289 50.000 17.98 0.00 0.00 5.28
88 89 2.735134 GTGGTGCACTAGTAGAAAACGG 59.265 50.000 17.98 0.00 0.00 4.44
89 90 2.407361 CGTGGTGCACTAGTAGAAAACG 59.593 50.000 17.98 3.93 31.34 3.60
90 91 2.735134 CCGTGGTGCACTAGTAGAAAAC 59.265 50.000 17.98 0.00 31.34 2.43
91 92 2.629137 TCCGTGGTGCACTAGTAGAAAA 59.371 45.455 17.98 0.00 31.34 2.29
92 93 2.241160 TCCGTGGTGCACTAGTAGAAA 58.759 47.619 17.98 0.00 31.34 2.52
93 94 1.913778 TCCGTGGTGCACTAGTAGAA 58.086 50.000 17.98 0.00 31.34 2.10
94 95 2.022195 GATCCGTGGTGCACTAGTAGA 58.978 52.381 17.98 7.97 31.34 2.59
95 96 1.067212 GGATCCGTGGTGCACTAGTAG 59.933 57.143 17.98 5.07 31.34 2.57
96 97 1.108776 GGATCCGTGGTGCACTAGTA 58.891 55.000 17.98 0.00 31.34 1.82
97 98 0.902984 TGGATCCGTGGTGCACTAGT 60.903 55.000 17.98 0.00 31.34 2.57
98 99 0.249120 TTGGATCCGTGGTGCACTAG 59.751 55.000 17.98 8.21 31.34 2.57
99 100 0.249120 CTTGGATCCGTGGTGCACTA 59.751 55.000 17.98 8.10 31.34 2.74
100 101 1.003355 CTTGGATCCGTGGTGCACT 60.003 57.895 17.98 0.00 31.34 4.40
101 102 2.690778 GCTTGGATCCGTGGTGCAC 61.691 63.158 8.80 8.80 0.00 4.57
102 103 2.359850 GCTTGGATCCGTGGTGCA 60.360 61.111 7.39 0.00 0.00 4.57
103 104 3.499737 CGCTTGGATCCGTGGTGC 61.500 66.667 7.39 5.79 0.00 5.01
108 109 1.299541 CAAATAGCGCTTGGATCCGT 58.700 50.000 18.68 0.00 0.00 4.69
135 136 2.826674 ATTCGGTGGGAATCCATTGT 57.173 45.000 0.09 0.00 46.09 2.71
152 153 1.369625 GACCGCAATCCGAGTTGATT 58.630 50.000 4.25 0.00 40.02 2.57
170 171 0.178973 TCTGAGAGGGTTGTGTCCGA 60.179 55.000 0.00 0.00 0.00 4.55
172 173 1.609320 GCTTCTGAGAGGGTTGTGTCC 60.609 57.143 0.00 0.00 0.00 4.02
179 180 3.764466 CGCCGCTTCTGAGAGGGT 61.764 66.667 0.00 0.00 42.55 4.34
197 198 1.296715 GACCATCCGTGTGGCTCTT 59.703 57.895 3.43 0.00 43.27 2.85
211 212 0.626382 AGACGAGGAGGAGATGACCA 59.374 55.000 0.00 0.00 0.00 4.02
212 213 1.133915 AGAGACGAGGAGGAGATGACC 60.134 57.143 0.00 0.00 0.00 4.02
230 231 1.685224 GGACCTTGTCCCATGCAGA 59.315 57.895 1.68 0.00 46.19 4.26
308 310 2.765807 CCTGGCCCGTGATCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
318 320 3.113514 GCTCCTAAGCTCCTGGCCC 62.114 68.421 0.00 0.00 45.55 5.80
328 330 1.078759 CACTTCACGCCGCTCCTAAG 61.079 60.000 0.00 0.00 0.00 2.18
337 339 2.490903 TCTAGTTACTCCACTTCACGCC 59.509 50.000 0.00 0.00 0.00 5.68
339 341 5.373981 AACTCTAGTTACTCCACTTCACG 57.626 43.478 0.00 0.00 36.32 4.35
348 350 6.503589 TCTCTGAGCAAACTCTAGTTACTC 57.496 41.667 14.44 14.44 43.85 2.59
349 351 6.627065 GCATCTCTGAGCAAACTCTAGTTACT 60.627 42.308 0.00 0.00 43.85 2.24
353 355 3.428725 CGCATCTCTGAGCAAACTCTAGT 60.429 47.826 0.00 0.00 43.85 2.57
360 362 3.070015 TCATATCCGCATCTCTGAGCAAA 59.930 43.478 0.00 0.00 0.00 3.68
402 404 2.600470 GCCCAGTTTGACCCACCC 60.600 66.667 0.00 0.00 0.00 4.61
412 414 4.324991 GTCGGAACCGGCCCAGTT 62.325 66.667 13.29 5.52 38.20 3.16
418 420 2.933878 TATGCCATGTCGGAACCGGC 62.934 60.000 11.04 11.04 45.14 6.13
419 421 0.250295 ATATGCCATGTCGGAACCGG 60.250 55.000 13.29 0.00 40.25 5.28
421 423 1.603802 CACATATGCCATGTCGGAACC 59.396 52.381 1.58 0.00 36.56 3.62
422 424 1.603802 CCACATATGCCATGTCGGAAC 59.396 52.381 1.58 0.00 36.56 3.62
423 425 1.476652 CCCACATATGCCATGTCGGAA 60.477 52.381 1.58 0.00 32.99 4.30
425 427 0.890542 CCCCACATATGCCATGTCGG 60.891 60.000 1.58 5.52 38.11 4.79
426 428 0.179020 ACCCCACATATGCCATGTCG 60.179 55.000 1.58 0.00 0.00 4.35
428 430 1.006998 ACAACCCCACATATGCCATGT 59.993 47.619 1.58 0.00 0.00 3.21
429 431 1.409790 CACAACCCCACATATGCCATG 59.590 52.381 1.58 0.00 0.00 3.66
432 434 0.324275 ACCACAACCCCACATATGCC 60.324 55.000 1.58 0.00 0.00 4.40
433 435 0.817013 CACCACAACCCCACATATGC 59.183 55.000 1.58 0.00 0.00 3.14
448 468 0.842030 ATGAAGAGGCTGACCCACCA 60.842 55.000 0.00 0.00 36.11 4.17
502 522 2.686235 TGTACCGGTGTTATGTTTCCG 58.314 47.619 19.93 0.00 42.22 4.30
504 524 5.106830 CCTTCTTGTACCGGTGTTATGTTTC 60.107 44.000 19.93 0.00 0.00 2.78
507 527 3.307199 CCCTTCTTGTACCGGTGTTATGT 60.307 47.826 19.93 0.00 0.00 2.29
509 529 2.355412 GCCCTTCTTGTACCGGTGTTAT 60.355 50.000 19.93 0.00 0.00 1.89
514 534 1.677552 CTGCCCTTCTTGTACCGGT 59.322 57.895 13.98 13.98 0.00 5.28
515 535 1.745489 GCTGCCCTTCTTGTACCGG 60.745 63.158 0.00 0.00 0.00 5.28
522 542 1.504275 ATGACCCAGCTGCCCTTCTT 61.504 55.000 8.66 0.00 0.00 2.52
526 546 1.578215 AATCATGACCCAGCTGCCCT 61.578 55.000 8.66 0.00 0.00 5.19
530 550 3.349927 TCAGAAAATCATGACCCAGCTG 58.650 45.455 6.78 6.78 0.00 4.24
531 551 3.265221 TCTCAGAAAATCATGACCCAGCT 59.735 43.478 0.00 0.00 0.00 4.24
537 557 7.010367 GTCAGTGATCTCTCAGAAAATCATGAC 59.990 40.741 0.00 16.28 34.08 3.06
541 561 5.246883 TGGTCAGTGATCTCTCAGAAAATCA 59.753 40.000 4.73 0.00 30.18 2.57
543 563 5.338219 CCTGGTCAGTGATCTCTCAGAAAAT 60.338 44.000 4.73 0.00 30.18 1.82
552 572 3.357203 TCTACACCTGGTCAGTGATCTC 58.643 50.000 4.73 0.00 0.00 2.75
554 574 3.739519 GCATCTACACCTGGTCAGTGATC 60.740 52.174 0.00 0.00 0.00 2.92
555 575 2.169352 GCATCTACACCTGGTCAGTGAT 59.831 50.000 0.00 0.00 0.00 3.06
556 576 1.550524 GCATCTACACCTGGTCAGTGA 59.449 52.381 0.00 0.00 0.00 3.41
557 577 1.552337 AGCATCTACACCTGGTCAGTG 59.448 52.381 0.00 0.63 0.00 3.66
558 578 1.552337 CAGCATCTACACCTGGTCAGT 59.448 52.381 0.00 0.00 0.00 3.41
559 579 1.552337 ACAGCATCTACACCTGGTCAG 59.448 52.381 0.00 0.00 0.00 3.51
560 580 1.644509 ACAGCATCTACACCTGGTCA 58.355 50.000 0.00 0.00 0.00 4.02
561 581 3.522553 GTTACAGCATCTACACCTGGTC 58.477 50.000 0.00 0.00 0.00 4.02
562 582 2.094182 CGTTACAGCATCTACACCTGGT 60.094 50.000 0.00 0.00 0.00 4.00
563 583 2.094182 ACGTTACAGCATCTACACCTGG 60.094 50.000 0.00 0.00 0.00 4.45
564 584 3.179830 GACGTTACAGCATCTACACCTG 58.820 50.000 0.00 0.00 0.00 4.00
565 585 2.165845 GGACGTTACAGCATCTACACCT 59.834 50.000 0.00 0.00 0.00 4.00
605 625 7.882271 AGCAAATTAATTTGGAGGCATAAACAA 59.118 29.630 31.89 0.00 45.44 2.83
628 661 2.087501 TTTTTGATAGCGACCGAGCA 57.912 45.000 0.00 0.00 40.15 4.26
643 676 9.729281 ATGAGGAAAGATGCAAAATGTATTTTT 57.271 25.926 0.00 0.00 37.86 1.94
645 678 9.807649 GTATGAGGAAAGATGCAAAATGTATTT 57.192 29.630 0.00 0.00 0.00 1.40
646 679 9.193806 AGTATGAGGAAAGATGCAAAATGTATT 57.806 29.630 0.00 0.00 0.00 1.89
647 680 8.757982 AGTATGAGGAAAGATGCAAAATGTAT 57.242 30.769 0.00 0.00 0.00 2.29
648 681 9.851686 ATAGTATGAGGAAAGATGCAAAATGTA 57.148 29.630 0.00 0.00 0.00 2.29
649 682 8.757982 ATAGTATGAGGAAAGATGCAAAATGT 57.242 30.769 0.00 0.00 0.00 2.71
650 683 8.843262 TGATAGTATGAGGAAAGATGCAAAATG 58.157 33.333 0.00 0.00 0.00 2.32
651 684 8.985315 TGATAGTATGAGGAAAGATGCAAAAT 57.015 30.769 0.00 0.00 0.00 1.82
652 685 8.806429 TTGATAGTATGAGGAAAGATGCAAAA 57.194 30.769 0.00 0.00 0.00 2.44
653 686 8.985315 ATTGATAGTATGAGGAAAGATGCAAA 57.015 30.769 0.00 0.00 0.00 3.68
654 687 8.985315 AATTGATAGTATGAGGAAAGATGCAA 57.015 30.769 0.00 0.00 0.00 4.08
655 688 8.985315 AAATTGATAGTATGAGGAAAGATGCA 57.015 30.769 0.00 0.00 0.00 3.96
704 737 9.994432 GGAAGAAAATAGTTGAGTGTCATTATG 57.006 33.333 0.00 0.00 0.00 1.90
705 738 9.178758 GGGAAGAAAATAGTTGAGTGTCATTAT 57.821 33.333 0.00 0.00 0.00 1.28
706 739 8.160765 TGGGAAGAAAATAGTTGAGTGTCATTA 58.839 33.333 0.00 0.00 0.00 1.90
707 740 7.004086 TGGGAAGAAAATAGTTGAGTGTCATT 58.996 34.615 0.00 0.00 0.00 2.57
708 741 6.542821 TGGGAAGAAAATAGTTGAGTGTCAT 58.457 36.000 0.00 0.00 0.00 3.06
709 742 5.935945 TGGGAAGAAAATAGTTGAGTGTCA 58.064 37.500 0.00 0.00 0.00 3.58
710 743 7.174946 TGAATGGGAAGAAAATAGTTGAGTGTC 59.825 37.037 0.00 0.00 0.00 3.67
711 744 7.004086 TGAATGGGAAGAAAATAGTTGAGTGT 58.996 34.615 0.00 0.00 0.00 3.55
712 745 7.452880 TGAATGGGAAGAAAATAGTTGAGTG 57.547 36.000 0.00 0.00 0.00 3.51
713 746 8.655935 AATGAATGGGAAGAAAATAGTTGAGT 57.344 30.769 0.00 0.00 0.00 3.41
714 747 7.912250 CGAATGAATGGGAAGAAAATAGTTGAG 59.088 37.037 0.00 0.00 0.00 3.02
715 748 7.393234 ACGAATGAATGGGAAGAAAATAGTTGA 59.607 33.333 0.00 0.00 0.00 3.18
716 749 7.538575 ACGAATGAATGGGAAGAAAATAGTTG 58.461 34.615 0.00 0.00 0.00 3.16
717 750 7.703058 ACGAATGAATGGGAAGAAAATAGTT 57.297 32.000 0.00 0.00 0.00 2.24
718 751 7.538575 CAACGAATGAATGGGAAGAAAATAGT 58.461 34.615 0.00 0.00 0.00 2.12
719 752 6.473455 GCAACGAATGAATGGGAAGAAAATAG 59.527 38.462 0.00 0.00 0.00 1.73
720 753 6.071672 TGCAACGAATGAATGGGAAGAAAATA 60.072 34.615 0.00 0.00 0.00 1.40
721 754 5.170748 GCAACGAATGAATGGGAAGAAAAT 58.829 37.500 0.00 0.00 0.00 1.82
722 755 4.038522 TGCAACGAATGAATGGGAAGAAAA 59.961 37.500 0.00 0.00 0.00 2.29
723 756 3.571828 TGCAACGAATGAATGGGAAGAAA 59.428 39.130 0.00 0.00 0.00 2.52
724 757 3.153130 TGCAACGAATGAATGGGAAGAA 58.847 40.909 0.00 0.00 0.00 2.52
725 758 2.789213 TGCAACGAATGAATGGGAAGA 58.211 42.857 0.00 0.00 0.00 2.87
726 759 3.441163 CATGCAACGAATGAATGGGAAG 58.559 45.455 0.00 0.00 40.91 3.46
727 760 2.417107 GCATGCAACGAATGAATGGGAA 60.417 45.455 14.21 0.00 44.30 3.97
728 761 1.134753 GCATGCAACGAATGAATGGGA 59.865 47.619 14.21 0.00 44.30 4.37
729 762 1.135527 AGCATGCAACGAATGAATGGG 59.864 47.619 21.98 0.00 44.30 4.00
730 763 2.572191 AGCATGCAACGAATGAATGG 57.428 45.000 21.98 0.13 44.30 3.16
731 764 5.275494 TCATAAGCATGCAACGAATGAATG 58.725 37.500 21.98 9.16 46.55 2.67
732 765 5.503662 TCATAAGCATGCAACGAATGAAT 57.496 34.783 21.98 0.00 31.73 2.57
733 766 4.961435 TCATAAGCATGCAACGAATGAA 57.039 36.364 21.98 3.82 31.73 2.57
734 767 4.336153 ACATCATAAGCATGCAACGAATGA 59.664 37.500 21.98 18.89 31.73 2.57
735 768 4.603985 ACATCATAAGCATGCAACGAATG 58.396 39.130 21.98 18.36 31.73 2.67
736 769 4.906065 ACATCATAAGCATGCAACGAAT 57.094 36.364 21.98 4.76 31.73 3.34
737 770 6.375945 AATACATCATAAGCATGCAACGAA 57.624 33.333 21.98 2.23 31.73 3.85
738 771 7.489574 TTAATACATCATAAGCATGCAACGA 57.510 32.000 21.98 10.90 31.73 3.85
739 772 8.016801 TCATTAATACATCATAAGCATGCAACG 58.983 33.333 21.98 5.24 31.73 4.10
740 773 9.121517 GTCATTAATACATCATAAGCATGCAAC 57.878 33.333 21.98 0.00 31.73 4.17
741 774 8.298854 GGTCATTAATACATCATAAGCATGCAA 58.701 33.333 21.98 7.96 31.73 4.08
742 775 7.666804 AGGTCATTAATACATCATAAGCATGCA 59.333 33.333 21.98 0.00 31.73 3.96
743 776 8.048534 AGGTCATTAATACATCATAAGCATGC 57.951 34.615 10.51 10.51 31.73 4.06
744 777 8.385858 CGAGGTCATTAATACATCATAAGCATG 58.614 37.037 0.00 0.00 0.00 4.06
745 778 7.550551 CCGAGGTCATTAATACATCATAAGCAT 59.449 37.037 9.04 0.00 0.00 3.79
746 779 6.873605 CCGAGGTCATTAATACATCATAAGCA 59.126 38.462 9.04 0.00 0.00 3.91
747 780 6.874134 ACCGAGGTCATTAATACATCATAAGC 59.126 38.462 0.00 0.00 0.00 3.09
748 781 8.833231 AACCGAGGTCATTAATACATCATAAG 57.167 34.615 0.00 0.00 0.00 1.73
750 783 9.701098 GTTAACCGAGGTCATTAATACATCATA 57.299 33.333 0.00 0.66 0.00 2.15
751 784 8.208224 TGTTAACCGAGGTCATTAATACATCAT 58.792 33.333 2.48 1.27 0.00 2.45
752 785 7.557724 TGTTAACCGAGGTCATTAATACATCA 58.442 34.615 2.48 0.00 0.00 3.07
753 786 8.428186 TTGTTAACCGAGGTCATTAATACATC 57.572 34.615 2.48 0.00 0.00 3.06
754 787 8.262227 TCTTGTTAACCGAGGTCATTAATACAT 58.738 33.333 2.48 0.00 0.00 2.29
755 788 7.613585 TCTTGTTAACCGAGGTCATTAATACA 58.386 34.615 2.48 0.00 0.00 2.29
756 789 8.483307 TTCTTGTTAACCGAGGTCATTAATAC 57.517 34.615 2.48 0.00 0.00 1.89
757 790 9.504708 TTTTCTTGTTAACCGAGGTCATTAATA 57.495 29.630 2.48 0.00 0.00 0.98
758 791 7.989416 TTTCTTGTTAACCGAGGTCATTAAT 57.011 32.000 2.48 0.00 0.00 1.40
759 792 7.804843 TTTTCTTGTTAACCGAGGTCATTAA 57.195 32.000 2.48 0.00 0.00 1.40
760 793 7.804843 TTTTTCTTGTTAACCGAGGTCATTA 57.195 32.000 2.48 0.00 0.00 1.90
761 794 6.702716 TTTTTCTTGTTAACCGAGGTCATT 57.297 33.333 2.48 0.00 0.00 2.57
816 849 8.620416 GCCACAAACTCATATTACACATATCAA 58.380 33.333 0.00 0.00 0.00 2.57
817 850 7.228507 GGCCACAAACTCATATTACACATATCA 59.771 37.037 0.00 0.00 0.00 2.15
818 851 7.445402 AGGCCACAAACTCATATTACACATATC 59.555 37.037 5.01 0.00 0.00 1.63
819 852 7.290061 AGGCCACAAACTCATATTACACATAT 58.710 34.615 5.01 0.00 0.00 1.78
820 853 6.658849 AGGCCACAAACTCATATTACACATA 58.341 36.000 5.01 0.00 0.00 2.29
821 854 5.509498 AGGCCACAAACTCATATTACACAT 58.491 37.500 5.01 0.00 0.00 3.21
822 855 4.917385 AGGCCACAAACTCATATTACACA 58.083 39.130 5.01 0.00 0.00 3.72
823 856 5.183140 ACAAGGCCACAAACTCATATTACAC 59.817 40.000 5.01 0.00 0.00 2.90
824 857 5.321102 ACAAGGCCACAAACTCATATTACA 58.679 37.500 5.01 0.00 0.00 2.41
825 858 5.897377 ACAAGGCCACAAACTCATATTAC 57.103 39.130 5.01 0.00 0.00 1.89
826 859 9.688091 TTTATACAAGGCCACAAACTCATATTA 57.312 29.630 5.01 0.00 0.00 0.98
827 860 8.588290 TTTATACAAGGCCACAAACTCATATT 57.412 30.769 5.01 0.00 0.00 1.28
828 861 8.588290 TTTTATACAAGGCCACAAACTCATAT 57.412 30.769 5.01 0.00 0.00 1.78
829 862 8.410673 TTTTTATACAAGGCCACAAACTCATA 57.589 30.769 5.01 0.00 0.00 2.15
830 863 6.909550 TTTTATACAAGGCCACAAACTCAT 57.090 33.333 5.01 0.00 0.00 2.90
831 864 6.716934 TTTTTATACAAGGCCACAAACTCA 57.283 33.333 5.01 0.00 0.00 3.41
858 891 9.877178 CCAGGTCAATATATACATACTCCTTTC 57.123 37.037 0.00 0.00 0.00 2.62
859 892 8.322091 GCCAGGTCAATATATACATACTCCTTT 58.678 37.037 0.00 0.00 0.00 3.11
860 893 7.457852 TGCCAGGTCAATATATACATACTCCTT 59.542 37.037 0.00 0.00 0.00 3.36
861 894 6.959954 TGCCAGGTCAATATATACATACTCCT 59.040 38.462 0.00 0.00 0.00 3.69
862 895 7.182817 TGCCAGGTCAATATATACATACTCC 57.817 40.000 0.00 0.00 0.00 3.85
863 896 8.314751 AGTTGCCAGGTCAATATATACATACTC 58.685 37.037 0.37 0.00 0.00 2.59
886 919 8.826293 AGAGCTGGAGTACTATTTTACTAGTT 57.174 34.615 0.00 0.00 32.17 2.24
969 1003 5.824624 ACAAGGATATGAAGCGAATGTGAAT 59.175 36.000 0.00 0.00 0.00 2.57
970 1004 5.185454 ACAAGGATATGAAGCGAATGTGAA 58.815 37.500 0.00 0.00 0.00 3.18
971 1005 4.769688 ACAAGGATATGAAGCGAATGTGA 58.230 39.130 0.00 0.00 0.00 3.58
972 1006 4.024556 GGACAAGGATATGAAGCGAATGTG 60.025 45.833 0.00 0.00 0.00 3.21
973 1007 4.130118 GGACAAGGATATGAAGCGAATGT 58.870 43.478 0.00 0.00 0.00 2.71
974 1008 3.499918 GGGACAAGGATATGAAGCGAATG 59.500 47.826 0.00 0.00 0.00 2.67
996 1030 1.529010 TCTGCCTGGCTGTTGGTTG 60.529 57.895 21.03 0.39 0.00 3.77
997 1031 1.529244 GTCTGCCTGGCTGTTGGTT 60.529 57.895 21.03 0.00 0.00 3.67
998 1032 2.113986 GTCTGCCTGGCTGTTGGT 59.886 61.111 21.03 0.00 0.00 3.67
999 1033 3.052082 CGTCTGCCTGGCTGTTGG 61.052 66.667 21.03 9.17 0.00 3.77
1068 1102 1.630148 GAAGGTGAAGTCGTCCATCG 58.370 55.000 0.00 0.00 41.41 3.84
1156 1190 2.680370 GGAGGCGAAGTGGGGGAAT 61.680 63.158 0.00 0.00 0.00 3.01
1245 1279 2.892425 GCTCTTCCATGCCGTCGG 60.892 66.667 6.99 6.99 0.00 4.79
1315 1349 1.118838 CTTCATCCGCTTCTCCTCCT 58.881 55.000 0.00 0.00 0.00 3.69
1328 1362 1.521681 CGACCGCCCCTTCTTCATC 60.522 63.158 0.00 0.00 0.00 2.92
1329 1363 2.291043 ACGACCGCCCCTTCTTCAT 61.291 57.895 0.00 0.00 0.00 2.57
1330 1364 2.920912 ACGACCGCCCCTTCTTCA 60.921 61.111 0.00 0.00 0.00 3.02
1386 1420 1.541233 CGTTGAAGTTCTCCCACAGCT 60.541 52.381 4.17 0.00 0.00 4.24
1557 1591 2.803479 GGTAGTACTGCCCCGTCG 59.197 66.667 18.61 0.00 0.00 5.12
1678 1712 0.933097 CATGTACGCATCACTCTGCC 59.067 55.000 0.00 0.00 39.00 4.85
1823 1870 5.728471 AGTGATATATGCCGAATTCCTCTG 58.272 41.667 0.00 0.00 0.00 3.35
1834 1881 5.922544 GCAAAACAATGGAGTGATATATGCC 59.077 40.000 0.00 0.00 0.00 4.40
1927 1979 1.512926 GCAGTGACAAGTGGGTACAG 58.487 55.000 0.00 0.00 0.00 2.74
1946 2002 2.593978 CAGGGCACATCTCCTGGG 59.406 66.667 0.00 0.00 44.99 4.45
1959 2016 3.465742 AGATCGTGATTCATGACAGGG 57.534 47.619 10.70 0.00 31.87 4.45
1986 2043 6.251655 ACTCATACCCGTCGAGTATAATTC 57.748 41.667 0.00 0.00 38.22 2.17
1996 2053 3.985925 GCCTTAATAACTCATACCCGTCG 59.014 47.826 0.00 0.00 0.00 5.12
1997 2054 4.313282 GGCCTTAATAACTCATACCCGTC 58.687 47.826 0.00 0.00 0.00 4.79
1998 2055 3.243975 CGGCCTTAATAACTCATACCCGT 60.244 47.826 0.00 0.00 0.00 5.28
1999 2056 3.323243 CGGCCTTAATAACTCATACCCG 58.677 50.000 0.00 0.00 0.00 5.28
2000 2057 3.072211 GCGGCCTTAATAACTCATACCC 58.928 50.000 0.00 0.00 0.00 3.69
2001 2058 2.735134 CGCGGCCTTAATAACTCATACC 59.265 50.000 0.00 0.00 0.00 2.73
2019 2076 3.993103 GGATGACTACCGAACGCG 58.007 61.111 3.53 3.53 37.24 6.01
2026 2083 0.249238 CTGCTCAGCGGATGACTACC 60.249 60.000 0.00 0.00 37.02 3.18
2027 2084 0.741326 TCTGCTCAGCGGATGACTAC 59.259 55.000 3.22 0.00 39.19 2.73
2028 2085 1.028130 CTCTGCTCAGCGGATGACTA 58.972 55.000 9.15 0.00 43.40 2.59
2029 2086 1.815196 CTCTGCTCAGCGGATGACT 59.185 57.895 9.15 0.00 43.40 3.41
2030 2087 1.882167 GCTCTGCTCAGCGGATGAC 60.882 63.158 9.15 0.00 43.40 3.06
2031 2088 2.498248 GCTCTGCTCAGCGGATGA 59.502 61.111 9.15 0.00 43.40 2.92
2038 2095 4.426112 TCCGTGCGCTCTGCTCAG 62.426 66.667 9.73 0.00 46.63 3.35
2039 2096 4.426112 CTCCGTGCGCTCTGCTCA 62.426 66.667 9.73 0.00 46.63 4.26
2049 2106 2.744709 TTAAAGCCCGCTCCGTGC 60.745 61.111 0.00 0.00 38.57 5.34
2050 2107 0.108520 TACTTAAAGCCCGCTCCGTG 60.109 55.000 0.00 0.00 0.00 4.94
2051 2108 0.609662 TTACTTAAAGCCCGCTCCGT 59.390 50.000 0.00 0.00 0.00 4.69
2052 2109 1.004595 GTTACTTAAAGCCCGCTCCG 58.995 55.000 0.00 0.00 0.00 4.63
2053 2110 2.093606 AGAGTTACTTAAAGCCCGCTCC 60.094 50.000 0.00 0.00 0.00 4.70
2054 2111 2.930682 CAGAGTTACTTAAAGCCCGCTC 59.069 50.000 0.00 0.00 0.00 5.03
2055 2112 2.302157 ACAGAGTTACTTAAAGCCCGCT 59.698 45.455 0.00 0.00 0.00 5.52
2056 2113 2.696506 ACAGAGTTACTTAAAGCCCGC 58.303 47.619 0.00 0.00 0.00 6.13
2057 2114 6.980051 ATTTACAGAGTTACTTAAAGCCCG 57.020 37.500 0.00 0.00 0.00 6.13
2126 2183 1.522569 GGATTCCCTCCACTCCGTG 59.477 63.158 0.00 0.00 44.26 4.94
2127 2184 2.058595 CGGATTCCCTCCACTCCGT 61.059 63.158 0.00 0.00 45.24 4.69
2128 2185 2.815308 CGGATTCCCTCCACTCCG 59.185 66.667 0.00 0.00 45.24 4.63
2129 2186 0.178301 GTTCGGATTCCCTCCACTCC 59.822 60.000 0.00 0.00 45.24 3.85
2130 2187 0.179108 CGTTCGGATTCCCTCCACTC 60.179 60.000 0.00 0.00 45.24 3.51
2131 2188 1.898154 CGTTCGGATTCCCTCCACT 59.102 57.895 0.00 0.00 45.24 4.00
2132 2189 1.814169 GCGTTCGGATTCCCTCCAC 60.814 63.158 0.00 0.00 45.24 4.02
2133 2190 2.582436 GCGTTCGGATTCCCTCCA 59.418 61.111 0.00 0.00 45.24 3.86
2134 2191 2.365095 ATCGCGTTCGGATTCCCTCC 62.365 60.000 5.77 0.00 41.07 4.30
2135 2192 0.940047 GATCGCGTTCGGATTCCCTC 60.940 60.000 5.77 0.00 36.13 4.30
2136 2193 1.067582 GATCGCGTTCGGATTCCCT 59.932 57.895 5.77 0.00 36.13 4.20
2137 2194 0.313043 TAGATCGCGTTCGGATTCCC 59.687 55.000 5.77 0.00 36.13 3.97
2138 2195 2.052157 CTTAGATCGCGTTCGGATTCC 58.948 52.381 5.77 0.00 36.13 3.01
2139 2196 2.468040 CACTTAGATCGCGTTCGGATTC 59.532 50.000 5.77 0.00 36.13 2.52
2140 2197 2.159282 ACACTTAGATCGCGTTCGGATT 60.159 45.455 5.77 0.00 36.13 3.01
2141 2198 1.404391 ACACTTAGATCGCGTTCGGAT 59.596 47.619 5.77 0.00 36.13 4.18
2142 2199 0.806868 ACACTTAGATCGCGTTCGGA 59.193 50.000 5.77 0.00 36.13 4.55
2143 2200 1.582502 GAACACTTAGATCGCGTTCGG 59.417 52.381 5.77 6.19 36.13 4.30
2144 2201 2.247637 TGAACACTTAGATCGCGTTCG 58.752 47.619 5.77 0.00 39.01 3.95
2145 2202 3.857665 TCATGAACACTTAGATCGCGTTC 59.142 43.478 5.77 7.71 37.16 3.95
2146 2203 3.845178 TCATGAACACTTAGATCGCGTT 58.155 40.909 5.77 0.00 0.00 4.84
2147 2204 3.119459 ACTCATGAACACTTAGATCGCGT 60.119 43.478 5.77 0.00 0.00 6.01
2148 2205 3.241553 CACTCATGAACACTTAGATCGCG 59.758 47.826 0.00 0.00 0.00 5.87
2149 2206 3.553511 CCACTCATGAACACTTAGATCGC 59.446 47.826 0.00 0.00 0.00 4.58
2150 2207 3.553511 GCCACTCATGAACACTTAGATCG 59.446 47.826 0.00 0.00 0.00 3.69
2151 2208 3.553511 CGCCACTCATGAACACTTAGATC 59.446 47.826 0.00 0.00 0.00 2.75
2152 2209 3.055819 ACGCCACTCATGAACACTTAGAT 60.056 43.478 0.00 0.00 0.00 1.98
2153 2210 2.299013 ACGCCACTCATGAACACTTAGA 59.701 45.455 0.00 0.00 0.00 2.10
2154 2211 2.688507 ACGCCACTCATGAACACTTAG 58.311 47.619 0.00 0.00 0.00 2.18
2155 2212 2.831685 ACGCCACTCATGAACACTTA 57.168 45.000 0.00 0.00 0.00 2.24
2156 2213 2.831685 TACGCCACTCATGAACACTT 57.168 45.000 0.00 0.00 0.00 3.16
2157 2214 2.037251 ACTTACGCCACTCATGAACACT 59.963 45.455 0.00 0.00 0.00 3.55
2158 2215 2.157668 CACTTACGCCACTCATGAACAC 59.842 50.000 0.00 0.00 0.00 3.32
2235 2302 5.458891 ACAGTACTACTCGCAGTAAACAAG 58.541 41.667 0.00 0.00 32.92 3.16
2275 2342 9.607988 TTTCCGTTGCTCTTGATTTTCTATATA 57.392 29.630 0.00 0.00 0.00 0.86
2292 2359 3.555518 GACACAAGAGAATTTCCGTTGC 58.444 45.455 7.80 0.00 0.00 4.17
2311 2378 1.270094 TGAGTCGTGTCACCAATGGAC 60.270 52.381 6.16 0.00 35.83 4.02
2324 2391 3.939592 TGACACGATATCTCTTGAGTCGT 59.060 43.478 8.35 8.35 43.38 4.34
2325 2392 4.537936 TGACACGATATCTCTTGAGTCG 57.462 45.455 0.34 7.33 38.98 4.18
2350 2417 6.346678 CGATTGCATCATTGAGTAGTCATGAG 60.347 42.308 0.00 4.04 30.85 2.90
2352 2419 5.235831 ACGATTGCATCATTGAGTAGTCATG 59.764 40.000 0.00 2.81 30.85 3.07
2370 5114 2.744202 ACTTAGCTGCTTCCAACGATTG 59.256 45.455 7.79 0.00 0.00 2.67
2399 5496 4.826556 TGATCATTACATTGTGTCACCGA 58.173 39.130 0.00 0.00 0.00 4.69
2401 5498 5.412594 ACACTGATCATTACATTGTGTCACC 59.587 40.000 8.40 0.00 32.66 4.02
2422 5527 0.954452 CTGGAAAGCAACCTCCACAC 59.046 55.000 0.00 0.00 36.79 3.82
2443 5548 0.322906 GGGCAGCTAAGCTTCCACTT 60.323 55.000 0.00 0.00 43.49 3.16
2498 5603 0.811281 CGCCCCTTTTCCAGTTCATC 59.189 55.000 0.00 0.00 0.00 2.92
2625 5734 2.252260 CCCACTGAAAACAGCGCG 59.748 61.111 0.00 0.00 0.00 6.86
2687 5796 4.200283 GTGAGCCGAGCGAGGGAG 62.200 72.222 2.78 0.00 0.00 4.30
2688 5797 2.904178 TATGTGAGCCGAGCGAGGGA 62.904 60.000 2.78 0.00 0.00 4.20
2689 5798 2.413437 CTATGTGAGCCGAGCGAGGG 62.413 65.000 2.78 0.00 0.00 4.30
2690 5799 1.007964 CTATGTGAGCCGAGCGAGG 60.008 63.158 0.00 0.00 0.00 4.63
2691 5800 1.007964 CCTATGTGAGCCGAGCGAG 60.008 63.158 0.00 0.00 0.00 5.03
2692 5801 2.490148 CCCTATGTGAGCCGAGCGA 61.490 63.158 0.00 0.00 0.00 4.93
2693 5802 2.028190 CCCTATGTGAGCCGAGCG 59.972 66.667 0.00 0.00 0.00 5.03
2694 5803 1.068250 GTCCCTATGTGAGCCGAGC 59.932 63.158 0.00 0.00 0.00 5.03
2695 5804 0.387202 CTGTCCCTATGTGAGCCGAG 59.613 60.000 0.00 0.00 0.00 4.63
2696 5805 1.676678 GCTGTCCCTATGTGAGCCGA 61.677 60.000 0.00 0.00 0.00 5.54
2697 5806 1.227380 GCTGTCCCTATGTGAGCCG 60.227 63.158 0.00 0.00 0.00 5.52
2698 5807 0.179062 CTGCTGTCCCTATGTGAGCC 60.179 60.000 0.00 0.00 0.00 4.70
2712 5822 0.460811 TAGTGCGAGCCAATCTGCTG 60.461 55.000 0.00 0.00 42.95 4.41
2713 5823 0.250234 TTAGTGCGAGCCAATCTGCT 59.750 50.000 0.00 0.00 46.37 4.24
2715 5825 1.667724 CCTTTAGTGCGAGCCAATCTG 59.332 52.381 0.00 0.00 0.00 2.90
2716 5826 1.407437 CCCTTTAGTGCGAGCCAATCT 60.407 52.381 0.00 0.00 0.00 2.40
2717 5827 1.017387 CCCTTTAGTGCGAGCCAATC 58.983 55.000 0.00 0.00 0.00 2.67
2718 5828 0.618458 TCCCTTTAGTGCGAGCCAAT 59.382 50.000 0.00 0.00 0.00 3.16
2766 5882 7.105588 TGTTCTACGAGTAATGAGGTAGTACA 58.894 38.462 2.06 5.71 39.40 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.