Multiple sequence alignment - TraesCS2A01G306000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G306000 chr2A 100.000 3419 0 0 1 3419 526281451 526278033 0.000000e+00 6314.0
1 TraesCS2A01G306000 chr2A 80.810 568 88 16 1 552 678155091 678154529 3.150000e-115 425.0
2 TraesCS2A01G306000 chr2A 100.000 30 0 0 729 758 526280660 526280631 4.770000e-04 56.5
3 TraesCS2A01G306000 chr2A 100.000 30 0 0 792 821 526280723 526280694 4.770000e-04 56.5
4 TraesCS2A01G306000 chr2B 91.009 1735 95 22 729 2462 461251914 461250240 0.000000e+00 2283.0
5 TraesCS2A01G306000 chr2B 88.571 140 16 0 556 695 461261873 461261734 1.630000e-38 171.0
6 TraesCS2A01G306000 chr2D 92.338 1514 82 13 686 2186 389698546 389697054 0.000000e+00 2122.0
7 TraesCS2A01G306000 chr2D 91.436 397 31 3 3025 3419 623459724 623460119 3.000000e-150 542.0
8 TraesCS2A01G306000 chr2D 81.985 544 92 5 5 546 403471611 403472150 1.120000e-124 457.0
9 TraesCS2A01G306000 chr2D 96.935 261 8 0 2202 2462 389697066 389696806 4.050000e-119 438.0
10 TraesCS2A01G306000 chr2D 82.296 514 81 7 5 510 650470032 650470543 1.460000e-118 436.0
11 TraesCS2A01G306000 chr2D 100.000 29 0 0 792 820 389698503 389698475 2.000000e-03 54.7
12 TraesCS2A01G306000 chr6A 89.463 503 43 5 2531 3029 194801479 194801975 8.050000e-176 627.0
13 TraesCS2A01G306000 chr6A 89.243 502 50 2 2531 3029 369577362 369577862 2.900000e-175 625.0
14 TraesCS2A01G306000 chr6A 88.072 503 54 4 2535 3032 489881994 489881493 2.940000e-165 592.0
15 TraesCS2A01G306000 chr6A 87.824 501 54 5 2531 3029 252861116 252860621 6.360000e-162 580.0
16 TraesCS2A01G306000 chr6A 87.751 498 57 2 2533 3029 392201370 392201864 2.290000e-161 579.0
17 TraesCS2A01G306000 chr6A 90.176 397 36 3 3025 3419 489866269 489865874 6.540000e-142 514.0
18 TraesCS2A01G306000 chr6A 90.206 388 36 2 3033 3419 392202888 392203274 3.940000e-139 505.0
19 TraesCS2A01G306000 chr6A 89.196 398 40 3 3024 3419 369578797 369579193 8.520000e-136 494.0
20 TraesCS2A01G306000 chr5A 89.109 505 44 7 2528 3029 650034458 650034954 4.850000e-173 617.0
21 TraesCS2A01G306000 chr4D 88.294 504 52 6 2531 3029 243709417 243709918 6.320000e-167 597.0
22 TraesCS2A01G306000 chr4D 90.932 397 33 3 3025 3419 243710917 243711312 6.500000e-147 531.0
23 TraesCS2A01G306000 chr1D 87.379 515 49 8 2530 3032 190485238 190484728 8.230000e-161 577.0
24 TraesCS2A01G306000 chr1D 91.184 397 32 3 3025 3419 190483744 190483349 1.400000e-148 536.0
25 TraesCS2A01G306000 chr3A 87.625 501 55 3 2531 3030 154705999 154705505 2.960000e-160 575.0
26 TraesCS2A01G306000 chr5D 90.428 397 33 5 3025 3419 425073663 425073270 5.060000e-143 518.0
27 TraesCS2A01G306000 chr5D 90.415 386 35 2 3034 3418 420846433 420846049 1.090000e-139 507.0
28 TraesCS2A01G306000 chr5D 81.786 560 90 9 2 552 483724204 483724760 3.110000e-125 459.0
29 TraesCS2A01G306000 chr3D 89.673 397 38 3 3025 3419 309657610 309657215 1.420000e-138 503.0
30 TraesCS2A01G306000 chr3D 82.432 518 79 9 37 545 529501799 529502313 3.130000e-120 442.0
31 TraesCS2A01G306000 chr5B 81.273 550 89 11 1 540 91898532 91899077 1.880000e-117 433.0
32 TraesCS2A01G306000 chr1B 81.215 543 82 16 5 540 501358662 501358133 1.470000e-113 420.0
33 TraesCS2A01G306000 chr7B 82.590 471 72 8 39 502 456000700 456000233 1.140000e-109 407.0
34 TraesCS2A01G306000 chr7D 80.325 554 91 12 6 552 180833275 180832733 1.480000e-108 403.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G306000 chr2A 526278033 526281451 3418 True 2142.333333 6314 100.000000 1 3419 3 chr2A.!!$R2 3418
1 TraesCS2A01G306000 chr2A 678154529 678155091 562 True 425.000000 425 80.810000 1 552 1 chr2A.!!$R1 551
2 TraesCS2A01G306000 chr2B 461250240 461251914 1674 True 2283.000000 2283 91.009000 729 2462 1 chr2B.!!$R1 1733
3 TraesCS2A01G306000 chr2D 389696806 389698546 1740 True 871.566667 2122 96.424333 686 2462 3 chr2D.!!$R1 1776
4 TraesCS2A01G306000 chr2D 403471611 403472150 539 False 457.000000 457 81.985000 5 546 1 chr2D.!!$F1 541
5 TraesCS2A01G306000 chr2D 650470032 650470543 511 False 436.000000 436 82.296000 5 510 1 chr2D.!!$F3 505
6 TraesCS2A01G306000 chr6A 489881493 489881994 501 True 592.000000 592 88.072000 2535 3032 1 chr6A.!!$R3 497
7 TraesCS2A01G306000 chr6A 369577362 369579193 1831 False 559.500000 625 89.219500 2531 3419 2 chr6A.!!$F2 888
8 TraesCS2A01G306000 chr6A 392201370 392203274 1904 False 542.000000 579 88.978500 2533 3419 2 chr6A.!!$F3 886
9 TraesCS2A01G306000 chr4D 243709417 243711312 1895 False 564.000000 597 89.613000 2531 3419 2 chr4D.!!$F1 888
10 TraesCS2A01G306000 chr1D 190483349 190485238 1889 True 556.500000 577 89.281500 2530 3419 2 chr1D.!!$R1 889
11 TraesCS2A01G306000 chr5D 483724204 483724760 556 False 459.000000 459 81.786000 2 552 1 chr5D.!!$F1 550
12 TraesCS2A01G306000 chr3D 529501799 529502313 514 False 442.000000 442 82.432000 37 545 1 chr3D.!!$F1 508
13 TraesCS2A01G306000 chr5B 91898532 91899077 545 False 433.000000 433 81.273000 1 540 1 chr5B.!!$F1 539
14 TraesCS2A01G306000 chr1B 501358133 501358662 529 True 420.000000 420 81.215000 5 540 1 chr1B.!!$R1 535
15 TraesCS2A01G306000 chr7D 180832733 180833275 542 True 403.000000 403 80.325000 6 552 1 chr7D.!!$R1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 647 0.036577 CCCGGGCATGATGATCTCTC 60.037 60.0 8.08 0.0 0.0 3.20 F
2187 2220 0.035056 CCGGGATGAGCAGGTCTTTT 60.035 55.0 0.00 0.0 0.0 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 2225 0.106967 GACCTGCTCATCCCCCTTTC 60.107 60.0 0.0 0.0 0.0 2.62 R
3230 4313 0.763223 ACTCCCAACGTCACCTTCCT 60.763 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.414785 GCGTGGGGCCGATGAAAAT 61.415 57.895 12.40 0.00 34.80 1.82
277 282 2.381961 GGAGAGGGAGAGGAGTGGATAT 59.618 54.545 0.00 0.00 0.00 1.63
287 292 4.227300 AGAGGAGTGGATATAGCGAGAGAT 59.773 45.833 0.00 0.00 0.00 2.75
318 327 1.848652 AGCTAGGGTTTGAGCTCGTA 58.151 50.000 9.64 0.00 46.08 3.43
363 372 3.324108 GGTGGTGGGTCGGGCTTA 61.324 66.667 0.00 0.00 0.00 3.09
419 429 5.645056 TTCATATCTGCCCTACATTTGGA 57.355 39.130 0.00 0.00 0.00 3.53
423 433 2.265367 TCTGCCCTACATTTGGACTGA 58.735 47.619 0.00 0.00 0.00 3.41
448 465 1.002624 GGGGTGCCGATCAGTTCAA 60.003 57.895 0.00 0.00 0.00 2.69
455 472 1.464189 GCCGATCAGTTCAAGCGTTTC 60.464 52.381 0.00 0.00 0.00 2.78
546 566 3.671716 GTTTGAGACGGGTATGAAAGGT 58.328 45.455 0.00 0.00 0.00 3.50
552 572 1.523032 GGGTATGAAAGGTCCGGCG 60.523 63.158 0.00 0.00 0.00 6.46
553 573 1.523032 GGTATGAAAGGTCCGGCGG 60.523 63.158 22.51 22.51 0.00 6.13
554 574 1.219935 GTATGAAAGGTCCGGCGGT 59.780 57.895 27.32 5.58 0.00 5.68
555 575 0.392060 GTATGAAAGGTCCGGCGGTT 60.392 55.000 27.32 13.05 0.00 4.44
556 576 0.391927 TATGAAAGGTCCGGCGGTTG 60.392 55.000 27.32 0.00 0.00 3.77
557 577 3.733960 GAAAGGTCCGGCGGTTGC 61.734 66.667 27.32 16.68 41.71 4.17
558 578 4.265056 AAAGGTCCGGCGGTTGCT 62.265 61.111 27.32 6.68 42.25 3.91
562 582 3.284449 GTCCGGCGGTTGCTGTTT 61.284 61.111 27.32 0.00 46.53 2.83
563 583 3.283684 TCCGGCGGTTGCTGTTTG 61.284 61.111 27.32 0.00 46.53 2.93
564 584 3.591835 CCGGCGGTTGCTGTTTGT 61.592 61.111 19.97 0.00 46.53 2.83
565 585 2.411290 CGGCGGTTGCTGTTTGTT 59.589 55.556 0.00 0.00 42.79 2.83
566 586 1.226831 CGGCGGTTGCTGTTTGTTT 60.227 52.632 0.00 0.00 42.79 2.83
567 587 0.804156 CGGCGGTTGCTGTTTGTTTT 60.804 50.000 0.00 0.00 42.79 2.43
568 588 1.364721 GGCGGTTGCTGTTTGTTTTT 58.635 45.000 0.00 0.00 42.25 1.94
569 589 1.061857 GGCGGTTGCTGTTTGTTTTTG 59.938 47.619 0.00 0.00 42.25 2.44
570 590 1.729517 GCGGTTGCTGTTTGTTTTTGT 59.270 42.857 0.00 0.00 38.39 2.83
571 591 2.222707 GCGGTTGCTGTTTGTTTTTGTC 60.223 45.455 0.00 0.00 38.39 3.18
572 592 2.347150 CGGTTGCTGTTTGTTTTTGTCC 59.653 45.455 0.00 0.00 0.00 4.02
573 593 2.347150 GGTTGCTGTTTGTTTTTGTCCG 59.653 45.455 0.00 0.00 0.00 4.79
574 594 2.285827 TGCTGTTTGTTTTTGTCCGG 57.714 45.000 0.00 0.00 0.00 5.14
575 595 1.134965 TGCTGTTTGTTTTTGTCCGGG 60.135 47.619 0.00 0.00 0.00 5.73
576 596 1.566404 CTGTTTGTTTTTGTCCGGGC 58.434 50.000 0.00 0.00 0.00 6.13
577 597 0.179134 TGTTTGTTTTTGTCCGGGCG 60.179 50.000 0.00 0.00 0.00 6.13
578 598 1.227002 TTTGTTTTTGTCCGGGCGC 60.227 52.632 0.00 0.00 0.00 6.53
579 599 1.668101 TTTGTTTTTGTCCGGGCGCT 61.668 50.000 7.64 0.00 0.00 5.92
580 600 2.050442 GTTTTTGTCCGGGCGCTG 60.050 61.111 7.64 0.00 0.00 5.18
581 601 2.517402 TTTTTGTCCGGGCGCTGT 60.517 55.556 7.64 0.00 0.00 4.40
582 602 2.548295 TTTTTGTCCGGGCGCTGTC 61.548 57.895 7.64 0.00 0.00 3.51
589 609 4.379243 CGGGCGCTGTCCTGTCTT 62.379 66.667 7.64 0.00 0.00 3.01
590 610 2.743928 GGGCGCTGTCCTGTCTTG 60.744 66.667 7.64 0.00 0.00 3.02
591 611 2.031163 GGCGCTGTCCTGTCTTGT 59.969 61.111 7.64 0.00 0.00 3.16
592 612 1.292223 GGCGCTGTCCTGTCTTGTA 59.708 57.895 7.64 0.00 0.00 2.41
593 613 1.014564 GGCGCTGTCCTGTCTTGTAC 61.015 60.000 7.64 0.00 0.00 2.90
594 614 1.344942 GCGCTGTCCTGTCTTGTACG 61.345 60.000 0.00 0.00 0.00 3.67
595 615 0.039437 CGCTGTCCTGTCTTGTACGT 60.039 55.000 0.00 0.00 0.00 3.57
596 616 1.699343 GCTGTCCTGTCTTGTACGTC 58.301 55.000 0.00 0.00 0.00 4.34
597 617 1.965083 CTGTCCTGTCTTGTACGTCG 58.035 55.000 0.00 0.00 0.00 5.12
598 618 1.266175 CTGTCCTGTCTTGTACGTCGT 59.734 52.381 2.21 2.21 0.00 4.34
599 619 1.265095 TGTCCTGTCTTGTACGTCGTC 59.735 52.381 0.00 0.00 0.00 4.20
600 620 0.877071 TCCTGTCTTGTACGTCGTCC 59.123 55.000 0.00 0.00 0.00 4.79
601 621 0.594602 CCTGTCTTGTACGTCGTCCA 59.405 55.000 0.00 0.00 0.00 4.02
602 622 1.201647 CCTGTCTTGTACGTCGTCCAT 59.798 52.381 0.00 0.00 0.00 3.41
603 623 2.251040 CTGTCTTGTACGTCGTCCATG 58.749 52.381 0.00 0.00 0.00 3.66
604 624 0.989890 GTCTTGTACGTCGTCCATGC 59.010 55.000 0.00 0.00 0.00 4.06
605 625 0.455464 TCTTGTACGTCGTCCATGCG 60.455 55.000 0.00 0.00 0.00 4.73
606 626 0.455464 CTTGTACGTCGTCCATGCGA 60.455 55.000 0.00 0.00 38.68 5.10
607 627 0.455464 TTGTACGTCGTCCATGCGAG 60.455 55.000 0.00 0.00 41.85 5.03
608 628 2.101575 TACGTCGTCCATGCGAGC 59.898 61.111 0.00 0.00 41.85 5.03
609 629 3.405592 TACGTCGTCCATGCGAGCC 62.406 63.158 0.00 0.00 41.85 4.70
621 641 4.240103 CGAGCCCGGGCATGATGA 62.240 66.667 45.13 0.00 44.88 2.92
622 642 2.433446 GAGCCCGGGCATGATGAT 59.567 61.111 45.13 25.09 44.88 2.45
623 643 1.673665 GAGCCCGGGCATGATGATC 60.674 63.158 45.13 28.59 44.88 2.92
624 644 2.121992 GAGCCCGGGCATGATGATCT 62.122 60.000 45.13 23.42 44.88 2.75
625 645 1.673665 GCCCGGGCATGATGATCTC 60.674 63.158 40.73 5.45 41.49 2.75
626 646 2.064628 CCCGGGCATGATGATCTCT 58.935 57.895 8.08 0.00 0.00 3.10
627 647 0.036577 CCCGGGCATGATGATCTCTC 60.037 60.000 8.08 0.00 0.00 3.20
628 648 0.683412 CCGGGCATGATGATCTCTCA 59.317 55.000 0.00 0.00 35.41 3.27
629 649 1.278413 CCGGGCATGATGATCTCTCAT 59.722 52.381 0.00 5.76 44.93 2.90
630 650 2.498885 CCGGGCATGATGATCTCTCATA 59.501 50.000 0.00 0.00 42.27 2.15
631 651 3.430513 CCGGGCATGATGATCTCTCATAG 60.431 52.174 0.00 7.17 42.27 2.23
632 652 3.195182 CGGGCATGATGATCTCTCATAGT 59.805 47.826 0.00 0.00 42.27 2.12
633 653 4.400567 CGGGCATGATGATCTCTCATAGTA 59.599 45.833 0.00 0.00 42.27 1.82
634 654 5.068855 CGGGCATGATGATCTCTCATAGTAT 59.931 44.000 0.00 0.00 42.27 2.12
635 655 6.264067 CGGGCATGATGATCTCTCATAGTATA 59.736 42.308 0.00 0.00 42.27 1.47
636 656 7.039853 CGGGCATGATGATCTCTCATAGTATAT 60.040 40.741 0.00 0.00 42.27 0.86
637 657 8.306038 GGGCATGATGATCTCTCATAGTATATC 58.694 40.741 0.00 0.00 42.27 1.63
638 658 8.022550 GGCATGATGATCTCTCATAGTATATCG 58.977 40.741 0.00 0.23 42.27 2.92
639 659 8.782144 GCATGATGATCTCTCATAGTATATCGA 58.218 37.037 0.00 0.00 42.27 3.59
641 661 9.844257 ATGATGATCTCTCATAGTATATCGACA 57.156 33.333 8.92 0.00 42.27 4.35
642 662 9.103861 TGATGATCTCTCATAGTATATCGACAC 57.896 37.037 0.00 0.00 42.27 3.67
643 663 7.527084 TGATCTCTCATAGTATATCGACACG 57.473 40.000 0.00 0.00 0.00 4.49
644 664 5.781452 TCTCTCATAGTATATCGACACGC 57.219 43.478 0.00 0.00 0.00 5.34
645 665 5.235516 TCTCTCATAGTATATCGACACGCA 58.764 41.667 0.00 0.00 0.00 5.24
646 666 5.699458 TCTCTCATAGTATATCGACACGCAA 59.301 40.000 0.00 0.00 0.00 4.85
648 668 4.473199 TCATAGTATATCGACACGCAAGC 58.527 43.478 0.00 0.00 45.62 4.01
649 669 2.135664 AGTATATCGACACGCAAGCC 57.864 50.000 0.00 0.00 45.62 4.35
650 670 1.681793 AGTATATCGACACGCAAGCCT 59.318 47.619 0.00 0.00 45.62 4.58
651 671 2.100916 AGTATATCGACACGCAAGCCTT 59.899 45.455 0.00 0.00 45.62 4.35
652 672 2.024176 ATATCGACACGCAAGCCTTT 57.976 45.000 0.00 0.00 45.62 3.11
653 673 1.803334 TATCGACACGCAAGCCTTTT 58.197 45.000 0.00 0.00 45.62 2.27
654 674 0.238289 ATCGACACGCAAGCCTTTTG 59.762 50.000 0.00 0.00 45.62 2.44
655 675 2.010817 CGACACGCAAGCCTTTTGC 61.011 57.895 1.93 1.93 45.62 3.68
674 694 1.753956 CGGGTTCGCAAAAAGAACTG 58.246 50.000 8.66 0.00 45.20 3.16
675 695 1.332375 CGGGTTCGCAAAAAGAACTGA 59.668 47.619 8.66 0.00 45.20 3.41
676 696 2.223386 CGGGTTCGCAAAAAGAACTGAA 60.223 45.455 8.66 0.00 45.20 3.02
677 697 3.732471 CGGGTTCGCAAAAAGAACTGAAA 60.732 43.478 8.66 0.00 45.20 2.69
678 698 3.796717 GGGTTCGCAAAAAGAACTGAAAG 59.203 43.478 8.66 0.00 45.20 2.62
679 699 4.439563 GGGTTCGCAAAAAGAACTGAAAGA 60.440 41.667 8.66 0.00 45.20 2.52
680 700 5.099575 GGTTCGCAAAAAGAACTGAAAGAA 58.900 37.500 8.66 0.00 45.20 2.52
681 701 5.575218 GGTTCGCAAAAAGAACTGAAAGAAA 59.425 36.000 8.66 0.00 45.20 2.52
682 702 6.255670 GGTTCGCAAAAAGAACTGAAAGAAAT 59.744 34.615 8.66 0.00 45.20 2.17
683 703 7.201522 GGTTCGCAAAAAGAACTGAAAGAAATT 60.202 33.333 8.66 0.00 45.20 1.82
684 704 7.449934 TCGCAAAAAGAACTGAAAGAAATTC 57.550 32.000 0.00 0.00 37.43 2.17
694 714 9.566432 AGAACTGAAAGAAATTCATAGACTGTT 57.434 29.630 0.00 0.00 46.62 3.16
695 715 9.818796 GAACTGAAAGAAATTCATAGACTGTTC 57.181 33.333 0.00 0.00 46.62 3.18
699 719 9.212641 TGAAAGAAATTCATAGACTGTTCAGAG 57.787 33.333 6.83 0.00 43.08 3.35
700 720 9.213799 GAAAGAAATTCATAGACTGTTCAGAGT 57.786 33.333 6.83 0.00 37.99 3.24
714 734 7.002879 ACTGTTCAGAGTAAGACTTGGTAGTA 58.997 38.462 6.83 0.00 33.84 1.82
765 785 2.490115 AGATGAAGGACTCGAGTGTCAC 59.510 50.000 25.58 15.76 38.61 3.67
770 790 1.235948 GGACTCGAGTGTCACGTCCT 61.236 60.000 25.58 0.00 40.67 3.85
775 795 0.875728 CGAGTGTCACGTCCTCTTCT 59.124 55.000 0.00 0.00 0.00 2.85
797 817 1.007271 AACCACGTCGCTCTCAGTG 60.007 57.895 0.00 0.00 0.00 3.66
798 818 2.807045 CCACGTCGCTCTCAGTGC 60.807 66.667 0.00 0.00 33.62 4.40
799 819 2.256764 CACGTCGCTCTCAGTGCT 59.743 61.111 0.00 0.00 0.00 4.40
802 822 1.799519 CGTCGCTCTCAGTGCTGAC 60.800 63.158 11.34 11.34 35.46 3.51
803 823 1.287191 GTCGCTCTCAGTGCTGACA 59.713 57.895 14.64 0.00 35.62 3.58
815 835 2.263077 GTGCTGACACGTAGATGAAGG 58.737 52.381 0.00 0.00 36.98 3.46
816 836 2.094700 GTGCTGACACGTAGATGAAGGA 60.095 50.000 0.00 0.00 36.98 3.36
817 837 2.094700 TGCTGACACGTAGATGAAGGAC 60.095 50.000 0.00 0.00 0.00 3.85
818 838 2.164624 GCTGACACGTAGATGAAGGACT 59.835 50.000 0.00 0.00 0.00 3.85
819 839 3.732471 GCTGACACGTAGATGAAGGACTC 60.732 52.174 0.00 0.00 0.00 3.36
820 840 2.418976 TGACACGTAGATGAAGGACTCG 59.581 50.000 0.00 0.00 0.00 4.18
821 841 2.419324 GACACGTAGATGAAGGACTCGT 59.581 50.000 0.00 0.00 0.00 4.18
822 842 3.603532 ACACGTAGATGAAGGACTCGTA 58.396 45.455 0.00 0.00 0.00 3.43
860 880 1.343465 TCACCGTTTCCTTGAGGACTC 59.657 52.381 0.00 0.00 45.39 3.36
861 881 1.344763 CACCGTTTCCTTGAGGACTCT 59.655 52.381 0.00 0.00 45.39 3.24
933 953 4.708601 TCGACTTGCGAGCTTAAAATTTC 58.291 39.130 0.00 0.00 45.59 2.17
953 974 0.815615 CCCTTTTAGCTAGCAGGGCG 60.816 60.000 21.46 5.78 39.80 6.13
1093 1117 2.577059 GCGACCGGAGATCAACCA 59.423 61.111 9.46 0.00 0.00 3.67
1094 1118 1.519455 GCGACCGGAGATCAACCAG 60.519 63.158 9.46 1.27 0.00 4.00
1095 1119 1.945354 GCGACCGGAGATCAACCAGA 61.945 60.000 9.46 0.00 0.00 3.86
1096 1120 0.101399 CGACCGGAGATCAACCAGAG 59.899 60.000 9.46 1.17 0.00 3.35
1097 1121 1.475403 GACCGGAGATCAACCAGAGA 58.525 55.000 9.46 0.00 0.00 3.10
1098 1122 1.407258 GACCGGAGATCAACCAGAGAG 59.593 57.143 9.46 0.00 0.00 3.20
1099 1123 1.006043 ACCGGAGATCAACCAGAGAGA 59.994 52.381 9.46 0.00 0.00 3.10
1100 1124 1.407258 CCGGAGATCAACCAGAGAGAC 59.593 57.143 0.00 0.00 0.00 3.36
1347 1371 2.092861 ACGAGATCCTTCTTCTCCTCGA 60.093 50.000 15.12 0.00 44.13 4.04
1461 1485 0.605589 CAGCGAGTTCCTGAGGTTCT 59.394 55.000 0.00 0.00 32.03 3.01
1561 1585 2.018515 GTACGAGGTCTCTCAGGGAAG 58.981 57.143 0.00 0.00 39.95 3.46
1598 1622 4.162690 GGGCGGCCGATGAGTTCT 62.163 66.667 33.48 0.00 0.00 3.01
1599 1623 2.586357 GGCGGCCGATGAGTTCTC 60.586 66.667 33.48 7.28 0.00 2.87
1600 1624 2.496817 GCGGCCGATGAGTTCTCT 59.503 61.111 33.48 0.00 0.00 3.10
1610 1634 3.472652 GATGAGTTCTCTAGAGCGAGGA 58.527 50.000 15.35 0.00 0.00 3.71
1707 1731 1.300620 CTCACGGAAAGCACGGACA 60.301 57.895 0.00 0.00 35.23 4.02
1838 1862 2.200373 ATTGCTACCCGTTTCTTGCT 57.800 45.000 0.00 0.00 0.00 3.91
1844 1868 3.616802 GCTACCCGTTTCTTGCTTCTACT 60.617 47.826 0.00 0.00 0.00 2.57
1847 1871 3.008049 ACCCGTTTCTTGCTTCTACTGAT 59.992 43.478 0.00 0.00 0.00 2.90
1852 1876 2.457598 TCTTGCTTCTACTGATCCGGT 58.542 47.619 0.00 0.00 0.00 5.28
1863 1887 2.569853 ACTGATCCGGTGTATTGGAACA 59.430 45.455 0.00 0.00 37.90 3.18
1865 1889 4.199310 CTGATCCGGTGTATTGGAACATT 58.801 43.478 0.00 0.00 39.30 2.71
1873 1897 5.616866 CGGTGTATTGGAACATTCACTTGTC 60.617 44.000 0.00 0.00 39.30 3.18
1880 1904 4.101585 TGGAACATTCACTTGTCAGAGACT 59.898 41.667 0.00 0.00 33.15 3.24
1950 1983 4.161333 CAAAAACTCCATGACGAGATTGC 58.839 43.478 6.04 0.00 33.83 3.56
2013 2046 1.617018 CCATGTCTCGGCAAGGGAGA 61.617 60.000 0.00 0.00 38.18 3.71
2040 2073 0.829990 GAGCAGGAGGAGGAAGAAGG 59.170 60.000 0.00 0.00 0.00 3.46
2047 2080 3.274690 AGGAGGAGGAAGAAGGAGAAGAT 59.725 47.826 0.00 0.00 0.00 2.40
2051 2084 6.293649 AGGAGGAAGAAGGAGAAGATATCT 57.706 41.667 0.00 0.00 42.61 1.98
2062 2095 3.561143 AGAAGATATCTCTGTCGGCTGT 58.439 45.455 5.51 0.00 30.46 4.40
2180 2213 4.247380 GGGAGCCGGGATGAGCAG 62.247 72.222 2.18 0.00 0.00 4.24
2181 2214 4.247380 GGAGCCGGGATGAGCAGG 62.247 72.222 2.18 0.00 0.00 4.85
2182 2215 3.474570 GAGCCGGGATGAGCAGGT 61.475 66.667 2.18 0.00 0.00 4.00
2183 2216 3.453070 GAGCCGGGATGAGCAGGTC 62.453 68.421 2.18 0.00 0.00 3.85
2184 2217 3.474570 GCCGGGATGAGCAGGTCT 61.475 66.667 2.18 0.00 0.00 3.85
2185 2218 3.036429 GCCGGGATGAGCAGGTCTT 62.036 63.158 2.18 0.00 0.00 3.01
2186 2219 1.604378 CCGGGATGAGCAGGTCTTT 59.396 57.895 0.00 0.00 0.00 2.52
2187 2220 0.035056 CCGGGATGAGCAGGTCTTTT 60.035 55.000 0.00 0.00 0.00 2.27
2188 2221 1.614317 CCGGGATGAGCAGGTCTTTTT 60.614 52.381 0.00 0.00 0.00 1.94
2235 2268 2.753296 CATGAAAACGTTGGGTTGCAT 58.247 42.857 0.00 0.00 39.30 3.96
2462 2495 8.438676 ACAGCATTAAGACTTGATATTGTACC 57.561 34.615 0.00 0.00 0.00 3.34
2463 2496 7.499232 ACAGCATTAAGACTTGATATTGTACCC 59.501 37.037 0.00 0.00 0.00 3.69
2464 2497 6.998673 AGCATTAAGACTTGATATTGTACCCC 59.001 38.462 0.00 0.00 0.00 4.95
2465 2498 6.998673 GCATTAAGACTTGATATTGTACCCCT 59.001 38.462 0.00 0.00 0.00 4.79
2466 2499 7.502561 GCATTAAGACTTGATATTGTACCCCTT 59.497 37.037 0.00 0.00 0.00 3.95
2467 2500 9.408648 CATTAAGACTTGATATTGTACCCCTTT 57.591 33.333 0.00 0.00 0.00 3.11
2468 2501 8.801882 TTAAGACTTGATATTGTACCCCTTTG 57.198 34.615 0.00 0.00 0.00 2.77
2469 2502 5.193679 AGACTTGATATTGTACCCCTTTGC 58.806 41.667 0.00 0.00 0.00 3.68
2470 2503 4.929479 ACTTGATATTGTACCCCTTTGCA 58.071 39.130 0.00 0.00 0.00 4.08
2471 2504 5.518865 ACTTGATATTGTACCCCTTTGCAT 58.481 37.500 0.00 0.00 0.00 3.96
2472 2505 5.957774 ACTTGATATTGTACCCCTTTGCATT 59.042 36.000 0.00 0.00 0.00 3.56
2473 2506 6.096846 ACTTGATATTGTACCCCTTTGCATTC 59.903 38.462 0.00 0.00 0.00 2.67
2474 2507 5.514169 TGATATTGTACCCCTTTGCATTCA 58.486 37.500 0.00 0.00 0.00 2.57
2475 2508 5.359576 TGATATTGTACCCCTTTGCATTCAC 59.640 40.000 0.00 0.00 0.00 3.18
2476 2509 1.917872 TGTACCCCTTTGCATTCACC 58.082 50.000 0.00 0.00 0.00 4.02
2477 2510 0.808755 GTACCCCTTTGCATTCACCG 59.191 55.000 0.00 0.00 0.00 4.94
2478 2511 0.693622 TACCCCTTTGCATTCACCGA 59.306 50.000 0.00 0.00 0.00 4.69
2479 2512 0.178975 ACCCCTTTGCATTCACCGAA 60.179 50.000 0.00 0.00 0.00 4.30
2480 2513 1.185315 CCCCTTTGCATTCACCGAAT 58.815 50.000 0.00 0.00 31.86 3.34
2489 2522 3.913548 CATTCACCGAATGTTGTGGAA 57.086 42.857 8.27 0.00 42.89 3.53
2490 2523 4.235939 CATTCACCGAATGTTGTGGAAA 57.764 40.909 8.27 0.00 42.89 3.13
2491 2524 4.615949 CATTCACCGAATGTTGTGGAAAA 58.384 39.130 8.27 0.00 42.89 2.29
2492 2525 4.927978 TTCACCGAATGTTGTGGAAAAT 57.072 36.364 0.00 0.00 33.29 1.82
2493 2526 6.385843 CATTCACCGAATGTTGTGGAAAATA 58.614 36.000 8.27 0.00 42.89 1.40
2494 2527 5.621197 TCACCGAATGTTGTGGAAAATAG 57.379 39.130 0.00 0.00 33.29 1.73
2495 2528 4.083003 TCACCGAATGTTGTGGAAAATAGC 60.083 41.667 0.00 0.00 33.29 2.97
2496 2529 4.079253 ACCGAATGTTGTGGAAAATAGCT 58.921 39.130 0.00 0.00 0.00 3.32
2497 2530 4.522789 ACCGAATGTTGTGGAAAATAGCTT 59.477 37.500 0.00 0.00 0.00 3.74
2498 2531 4.858692 CCGAATGTTGTGGAAAATAGCTTG 59.141 41.667 0.00 0.00 0.00 4.01
2499 2532 5.335583 CCGAATGTTGTGGAAAATAGCTTGA 60.336 40.000 0.00 0.00 0.00 3.02
2500 2533 6.148948 CGAATGTTGTGGAAAATAGCTTGAA 58.851 36.000 0.00 0.00 0.00 2.69
2501 2534 6.088085 CGAATGTTGTGGAAAATAGCTTGAAC 59.912 38.462 0.00 0.00 0.00 3.18
2502 2535 5.843673 TGTTGTGGAAAATAGCTTGAACA 57.156 34.783 0.00 0.00 0.00 3.18
2503 2536 6.214191 TGTTGTGGAAAATAGCTTGAACAA 57.786 33.333 0.00 0.00 0.00 2.83
2504 2537 6.039616 TGTTGTGGAAAATAGCTTGAACAAC 58.960 36.000 8.08 8.08 0.00 3.32
2505 2538 5.195001 TGTGGAAAATAGCTTGAACAACC 57.805 39.130 0.00 0.00 0.00 3.77
2506 2539 4.226761 GTGGAAAATAGCTTGAACAACCG 58.773 43.478 0.00 0.00 0.00 4.44
2507 2540 3.242518 GGAAAATAGCTTGAACAACCGC 58.757 45.455 0.00 0.00 0.00 5.68
2508 2541 3.242518 GAAAATAGCTTGAACAACCGCC 58.757 45.455 0.00 0.00 0.00 6.13
2509 2542 1.904287 AATAGCTTGAACAACCGCCA 58.096 45.000 0.00 0.00 0.00 5.69
2510 2543 2.128771 ATAGCTTGAACAACCGCCAT 57.871 45.000 0.00 0.00 0.00 4.40
2511 2544 1.904287 TAGCTTGAACAACCGCCATT 58.096 45.000 0.00 0.00 0.00 3.16
2512 2545 0.598065 AGCTTGAACAACCGCCATTC 59.402 50.000 0.00 0.00 0.00 2.67
2513 2546 0.313672 GCTTGAACAACCGCCATTCA 59.686 50.000 0.00 0.00 0.00 2.57
2514 2547 1.666888 GCTTGAACAACCGCCATTCAG 60.667 52.381 0.00 0.00 34.04 3.02
2515 2548 1.608590 CTTGAACAACCGCCATTCAGT 59.391 47.619 0.00 0.00 34.04 3.41
2516 2549 1.686355 TGAACAACCGCCATTCAGTT 58.314 45.000 0.00 0.00 0.00 3.16
2517 2550 2.028130 TGAACAACCGCCATTCAGTTT 58.972 42.857 0.00 0.00 0.00 2.66
2518 2551 3.215151 TGAACAACCGCCATTCAGTTTA 58.785 40.909 0.00 0.00 0.00 2.01
2519 2552 3.823873 TGAACAACCGCCATTCAGTTTAT 59.176 39.130 0.00 0.00 0.00 1.40
2520 2553 4.279671 TGAACAACCGCCATTCAGTTTATT 59.720 37.500 0.00 0.00 0.00 1.40
2521 2554 4.173036 ACAACCGCCATTCAGTTTATTG 57.827 40.909 0.00 0.00 0.00 1.90
2522 2555 3.056891 ACAACCGCCATTCAGTTTATTGG 60.057 43.478 0.00 0.00 0.00 3.16
2523 2556 3.080300 ACCGCCATTCAGTTTATTGGA 57.920 42.857 0.00 0.00 0.00 3.53
2524 2557 3.426615 ACCGCCATTCAGTTTATTGGAA 58.573 40.909 0.00 0.00 0.00 3.53
2525 2558 4.023291 ACCGCCATTCAGTTTATTGGAAT 58.977 39.130 0.00 0.00 0.00 3.01
2526 2559 4.142182 ACCGCCATTCAGTTTATTGGAATG 60.142 41.667 0.00 0.00 44.61 2.67
2553 2586 1.741770 GCATCTTCAGCCGTTCGGT 60.742 57.895 12.81 0.00 0.00 4.69
2572 2605 2.440247 CCCCAGGGCGCCTAAAAG 60.440 66.667 28.56 11.60 29.64 2.27
2609 2642 3.089874 TGGCGCTAGATTGGCCCT 61.090 61.111 7.64 0.00 46.31 5.19
2672 2708 1.468520 CAGGACGTGGCAATTTCGAAT 59.531 47.619 0.00 0.00 0.00 3.34
2730 2774 2.104111 TGATCACAGGACAAAGTTCGGT 59.896 45.455 0.00 0.00 0.00 4.69
2733 2777 1.597663 CACAGGACAAAGTTCGGTGAC 59.402 52.381 3.06 0.00 39.06 3.67
2735 2779 0.834612 AGGACAAAGTTCGGTGACCA 59.165 50.000 1.11 0.00 32.79 4.02
2751 2796 3.035363 TGACCAGATAAATAGTCCGGCA 58.965 45.455 0.00 0.00 0.00 5.69
2755 2800 6.666113 TGACCAGATAAATAGTCCGGCATATA 59.334 38.462 0.00 0.00 0.00 0.86
2898 2944 4.397832 GTCGGCGGGGCTTTGGTA 62.398 66.667 7.21 0.00 0.00 3.25
2991 3046 1.170290 TCGTCGTCAGCTGGTTCAGA 61.170 55.000 15.13 5.96 32.44 3.27
3072 4155 2.641559 GTCGGTCTCGTCGGTGTT 59.358 61.111 0.00 0.00 37.69 3.32
3105 4188 1.412710 ACGTGGAAGCTTGTGAGAAGA 59.587 47.619 2.10 0.00 0.00 2.87
3230 4313 2.039787 TAGGCCGGGTGTCCATGA 59.960 61.111 2.18 0.00 0.00 3.07
3247 4331 0.761323 TGAGGAAGGTGACGTTGGGA 60.761 55.000 0.00 0.00 0.00 4.37
3248 4332 0.037232 GAGGAAGGTGACGTTGGGAG 60.037 60.000 0.00 0.00 0.00 4.30
3282 4366 1.749638 CGTCCCCGTCAGAGTAGCT 60.750 63.158 0.00 0.00 0.00 3.32
3336 4420 3.441290 CGAGAAGCCGACCGGAGT 61.441 66.667 9.46 0.00 37.50 3.85
3350 4434 4.090057 GAGTGCCGACGCTTTGCC 62.090 66.667 0.00 0.00 36.56 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.944234 AATTTTCATCGGCCCCACGC 61.944 55.000 0.00 0.00 0.00 5.34
20 21 0.894141 CACAATTTTCATCGGCCCCA 59.106 50.000 0.00 0.00 0.00 4.96
31 32 1.408702 ACGCAAGGACAGCACAATTTT 59.591 42.857 0.00 0.00 46.39 1.82
33 34 0.593128 GACGCAAGGACAGCACAATT 59.407 50.000 0.00 0.00 46.39 2.32
35 36 2.243957 CGACGCAAGGACAGCACAA 61.244 57.895 0.00 0.00 46.39 3.33
169 170 2.368875 GAGGAGATGGCCCTTCGAATTA 59.631 50.000 0.00 0.00 33.36 1.40
173 174 1.762460 GGAGGAGATGGCCCTTCGA 60.762 63.158 0.00 0.00 33.36 3.71
277 282 1.771854 ACTCTCTCCCATCTCTCGCTA 59.228 52.381 0.00 0.00 0.00 4.26
287 292 0.260230 CCCTAGCTCACTCTCTCCCA 59.740 60.000 0.00 0.00 0.00 4.37
332 341 1.038681 ACCACCGACCCCACAAAAAC 61.039 55.000 0.00 0.00 0.00 2.43
355 364 2.443203 TCCGCCTGATAAGCCCGA 60.443 61.111 0.00 0.00 0.00 5.14
386 396 1.869767 CAGATATGAAACGCCTCAGGC 59.130 52.381 5.22 5.22 46.75 4.85
389 399 1.475034 GGGCAGATATGAAACGCCTCA 60.475 52.381 0.00 0.00 42.56 3.86
392 402 2.143925 GTAGGGCAGATATGAAACGCC 58.856 52.381 0.00 0.00 42.21 5.68
393 403 2.833794 TGTAGGGCAGATATGAAACGC 58.166 47.619 0.00 0.00 0.00 4.84
394 404 5.277974 CCAAATGTAGGGCAGATATGAAACG 60.278 44.000 0.00 0.00 0.00 3.60
395 405 5.827797 TCCAAATGTAGGGCAGATATGAAAC 59.172 40.000 0.00 0.00 0.00 2.78
397 407 5.132648 AGTCCAAATGTAGGGCAGATATGAA 59.867 40.000 0.00 0.00 31.65 2.57
419 429 0.469917 CGGCACCCCTCATATTCAGT 59.530 55.000 0.00 0.00 0.00 3.41
423 433 1.349026 CTGATCGGCACCCCTCATATT 59.651 52.381 0.00 0.00 0.00 1.28
448 465 2.158957 TCTCAAACTGTGGAGAAACGCT 60.159 45.455 9.27 0.00 37.23 5.07
455 472 2.630098 TCAGACCTCTCAAACTGTGGAG 59.370 50.000 3.96 3.96 0.00 3.86
512 532 0.508641 CTCAAACGCTCAGAACACCG 59.491 55.000 0.00 0.00 0.00 4.94
513 533 1.527311 GTCTCAAACGCTCAGAACACC 59.473 52.381 0.00 0.00 0.00 4.16
514 534 1.190323 CGTCTCAAACGCTCAGAACAC 59.810 52.381 0.00 0.00 45.76 3.32
546 566 3.283684 CAAACAGCAACCGCCGGA 61.284 61.111 11.71 0.00 39.83 5.14
552 572 2.347150 CGGACAAAAACAAACAGCAACC 59.653 45.455 0.00 0.00 0.00 3.77
553 573 2.347150 CCGGACAAAAACAAACAGCAAC 59.653 45.455 0.00 0.00 0.00 4.17
554 574 2.611518 CCGGACAAAAACAAACAGCAA 58.388 42.857 0.00 0.00 0.00 3.91
555 575 1.134965 CCCGGACAAAAACAAACAGCA 60.135 47.619 0.73 0.00 0.00 4.41
556 576 1.566404 CCCGGACAAAAACAAACAGC 58.434 50.000 0.73 0.00 0.00 4.40
557 577 1.566404 GCCCGGACAAAAACAAACAG 58.434 50.000 0.73 0.00 0.00 3.16
558 578 0.179134 CGCCCGGACAAAAACAAACA 60.179 50.000 0.73 0.00 0.00 2.83
559 579 1.484227 GCGCCCGGACAAAAACAAAC 61.484 55.000 0.73 0.00 0.00 2.93
560 580 1.227002 GCGCCCGGACAAAAACAAA 60.227 52.632 0.73 0.00 0.00 2.83
561 581 2.122167 AGCGCCCGGACAAAAACAA 61.122 52.632 0.73 0.00 0.00 2.83
562 582 2.517402 AGCGCCCGGACAAAAACA 60.517 55.556 0.73 0.00 0.00 2.83
563 583 2.050442 CAGCGCCCGGACAAAAAC 60.050 61.111 0.73 0.00 0.00 2.43
564 584 2.517402 ACAGCGCCCGGACAAAAA 60.517 55.556 0.73 0.00 0.00 1.94
565 585 2.975799 GACAGCGCCCGGACAAAA 60.976 61.111 0.73 0.00 0.00 2.44
572 592 4.379243 AAGACAGGACAGCGCCCG 62.379 66.667 2.29 0.00 0.00 6.13
573 593 2.167398 TACAAGACAGGACAGCGCCC 62.167 60.000 2.29 0.00 0.00 6.13
574 594 1.014564 GTACAAGACAGGACAGCGCC 61.015 60.000 2.29 0.00 0.00 6.53
575 595 1.344942 CGTACAAGACAGGACAGCGC 61.345 60.000 0.00 0.00 0.00 5.92
576 596 0.039437 ACGTACAAGACAGGACAGCG 60.039 55.000 0.00 0.00 0.00 5.18
577 597 1.699343 GACGTACAAGACAGGACAGC 58.301 55.000 0.00 0.00 0.00 4.40
578 598 1.266175 ACGACGTACAAGACAGGACAG 59.734 52.381 0.00 0.00 0.00 3.51
579 599 1.265095 GACGACGTACAAGACAGGACA 59.735 52.381 0.00 0.00 0.00 4.02
580 600 1.400759 GGACGACGTACAAGACAGGAC 60.401 57.143 5.03 0.00 0.00 3.85
581 601 0.877071 GGACGACGTACAAGACAGGA 59.123 55.000 5.03 0.00 0.00 3.86
582 602 0.594602 TGGACGACGTACAAGACAGG 59.405 55.000 11.30 0.00 0.00 4.00
583 603 2.251040 CATGGACGACGTACAAGACAG 58.749 52.381 18.40 1.44 26.61 3.51
584 604 1.667756 GCATGGACGACGTACAAGACA 60.668 52.381 18.40 2.40 26.61 3.41
585 605 0.989890 GCATGGACGACGTACAAGAC 59.010 55.000 18.40 5.86 26.61 3.01
586 606 0.455464 CGCATGGACGACGTACAAGA 60.455 55.000 18.40 0.00 34.06 3.02
587 607 0.455464 TCGCATGGACGACGTACAAG 60.455 55.000 18.40 14.46 37.09 3.16
588 608 0.455464 CTCGCATGGACGACGTACAA 60.455 55.000 18.40 0.00 37.09 2.41
589 609 1.135939 CTCGCATGGACGACGTACA 59.864 57.895 16.66 16.66 37.09 2.90
590 610 2.222217 GCTCGCATGGACGACGTAC 61.222 63.158 2.34 2.34 37.09 3.67
591 611 2.101575 GCTCGCATGGACGACGTA 59.898 61.111 0.00 0.00 37.09 3.57
592 612 4.796231 GGCTCGCATGGACGACGT 62.796 66.667 0.00 0.00 37.09 4.34
604 624 3.541950 ATCATCATGCCCGGGCTCG 62.542 63.158 43.34 33.11 42.51 5.03
605 625 1.673665 GATCATCATGCCCGGGCTC 60.674 63.158 43.34 27.84 42.51 4.70
606 626 2.121992 GAGATCATCATGCCCGGGCT 62.122 60.000 43.34 27.34 42.51 5.19
607 627 1.673665 GAGATCATCATGCCCGGGC 60.674 63.158 39.40 39.40 42.35 6.13
608 628 0.036577 GAGAGATCATCATGCCCGGG 60.037 60.000 19.09 19.09 0.00 5.73
609 629 0.683412 TGAGAGATCATCATGCCCGG 59.317 55.000 0.00 0.00 0.00 5.73
610 630 2.764439 ATGAGAGATCATCATGCCCG 57.236 50.000 11.46 0.00 36.07 6.13
611 631 4.822685 ACTATGAGAGATCATCATGCCC 57.177 45.455 18.69 0.00 37.91 5.36
612 632 8.022550 CGATATACTATGAGAGATCATCATGCC 58.977 40.741 18.69 4.53 37.91 4.40
613 633 8.782144 TCGATATACTATGAGAGATCATCATGC 58.218 37.037 18.69 0.00 37.91 4.06
615 635 9.844257 TGTCGATATACTATGAGAGATCATCAT 57.156 33.333 15.33 15.33 40.45 2.45
616 636 9.103861 GTGTCGATATACTATGAGAGATCATCA 57.896 37.037 3.42 3.42 0.00 3.07
617 637 8.272866 CGTGTCGATATACTATGAGAGATCATC 58.727 40.741 0.00 0.00 0.00 2.92
618 638 7.254624 GCGTGTCGATATACTATGAGAGATCAT 60.255 40.741 0.00 0.00 0.00 2.45
619 639 6.036191 GCGTGTCGATATACTATGAGAGATCA 59.964 42.308 0.00 0.00 0.00 2.92
620 640 6.036191 TGCGTGTCGATATACTATGAGAGATC 59.964 42.308 0.00 0.00 0.00 2.75
621 641 5.875359 TGCGTGTCGATATACTATGAGAGAT 59.125 40.000 0.00 0.00 0.00 2.75
622 642 5.235516 TGCGTGTCGATATACTATGAGAGA 58.764 41.667 0.00 0.00 0.00 3.10
623 643 5.532025 TGCGTGTCGATATACTATGAGAG 57.468 43.478 0.00 0.00 0.00 3.20
624 644 5.617087 GCTTGCGTGTCGATATACTATGAGA 60.617 44.000 0.00 0.00 0.00 3.27
625 645 4.555360 GCTTGCGTGTCGATATACTATGAG 59.445 45.833 0.00 0.00 0.00 2.90
626 646 4.473199 GCTTGCGTGTCGATATACTATGA 58.527 43.478 0.00 0.00 0.00 2.15
627 647 3.608506 GGCTTGCGTGTCGATATACTATG 59.391 47.826 0.00 0.00 0.00 2.23
628 648 3.506455 AGGCTTGCGTGTCGATATACTAT 59.494 43.478 0.00 0.00 0.00 2.12
629 649 2.882761 AGGCTTGCGTGTCGATATACTA 59.117 45.455 0.00 0.00 0.00 1.82
630 650 1.681793 AGGCTTGCGTGTCGATATACT 59.318 47.619 0.00 0.00 0.00 2.12
631 651 2.135664 AGGCTTGCGTGTCGATATAC 57.864 50.000 0.00 0.00 0.00 1.47
632 652 2.882927 AAGGCTTGCGTGTCGATATA 57.117 45.000 0.00 0.00 0.00 0.86
633 653 2.024176 AAAGGCTTGCGTGTCGATAT 57.976 45.000 0.00 0.00 0.00 1.63
634 654 1.463056 CAAAAGGCTTGCGTGTCGATA 59.537 47.619 0.00 0.00 0.00 2.92
635 655 0.238289 CAAAAGGCTTGCGTGTCGAT 59.762 50.000 0.00 0.00 0.00 3.59
636 656 1.646540 CAAAAGGCTTGCGTGTCGA 59.353 52.632 0.00 0.00 0.00 4.20
637 657 2.010817 GCAAAAGGCTTGCGTGTCG 61.011 57.895 0.00 0.00 40.25 4.35
638 658 3.922175 GCAAAAGGCTTGCGTGTC 58.078 55.556 0.00 0.00 40.25 3.67
643 663 1.664649 GAACCCGCAAAAGGCTTGC 60.665 57.895 0.00 0.00 41.67 4.01
644 664 1.371635 CGAACCCGCAAAAGGCTTG 60.372 57.895 0.00 0.00 41.67 4.01
645 665 3.039134 CGAACCCGCAAAAGGCTT 58.961 55.556 0.00 0.00 41.67 4.35
655 675 1.332375 TCAGTTCTTTTTGCGAACCCG 59.668 47.619 0.00 0.00 41.19 5.28
656 676 3.430333 TTCAGTTCTTTTTGCGAACCC 57.570 42.857 0.00 0.00 41.19 4.11
657 677 4.668289 TCTTTCAGTTCTTTTTGCGAACC 58.332 39.130 0.00 0.00 41.19 3.62
658 678 6.626199 TTTCTTTCAGTTCTTTTTGCGAAC 57.374 33.333 0.00 0.00 40.72 3.95
659 679 7.543868 TGAATTTCTTTCAGTTCTTTTTGCGAA 59.456 29.630 0.00 0.00 39.44 4.70
660 680 7.032580 TGAATTTCTTTCAGTTCTTTTTGCGA 58.967 30.769 0.00 0.00 39.44 5.10
661 681 7.220599 TGAATTTCTTTCAGTTCTTTTTGCG 57.779 32.000 0.00 0.00 39.44 4.85
674 694 9.213799 ACTCTGAACAGTCTATGAATTTCTTTC 57.786 33.333 1.73 0.00 34.72 2.62
677 697 9.868277 CTTACTCTGAACAGTCTATGAATTTCT 57.132 33.333 1.73 0.00 0.00 2.52
678 698 9.862371 TCTTACTCTGAACAGTCTATGAATTTC 57.138 33.333 1.73 0.00 0.00 2.17
679 699 9.646427 GTCTTACTCTGAACAGTCTATGAATTT 57.354 33.333 1.73 0.00 0.00 1.82
680 700 9.030452 AGTCTTACTCTGAACAGTCTATGAATT 57.970 33.333 1.73 0.00 0.00 2.17
681 701 8.588290 AGTCTTACTCTGAACAGTCTATGAAT 57.412 34.615 1.73 0.00 0.00 2.57
682 702 8.300286 CAAGTCTTACTCTGAACAGTCTATGAA 58.700 37.037 1.73 0.00 0.00 2.57
683 703 7.094162 CCAAGTCTTACTCTGAACAGTCTATGA 60.094 40.741 1.73 0.00 0.00 2.15
684 704 7.032580 CCAAGTCTTACTCTGAACAGTCTATG 58.967 42.308 1.73 0.00 0.00 2.23
727 747 0.241213 TCTACGTGTCAGCACTGAGC 59.759 55.000 0.00 0.00 43.16 4.26
765 785 0.037232 GTGGTTGGGAGAAGAGGACG 60.037 60.000 0.00 0.00 0.00 4.79
770 790 1.663739 CGACGTGGTTGGGAGAAGA 59.336 57.895 0.00 0.00 0.00 2.87
775 795 2.915659 AGAGCGACGTGGTTGGGA 60.916 61.111 0.00 0.00 0.00 4.37
797 817 2.164624 AGTCCTTCATCTACGTGTCAGC 59.835 50.000 0.00 0.00 0.00 4.26
798 818 3.486043 CGAGTCCTTCATCTACGTGTCAG 60.486 52.174 0.00 0.00 0.00 3.51
799 819 2.418976 CGAGTCCTTCATCTACGTGTCA 59.581 50.000 0.00 0.00 0.00 3.58
802 822 3.869832 TCTACGAGTCCTTCATCTACGTG 59.130 47.826 0.00 0.00 34.52 4.49
803 823 3.870419 GTCTACGAGTCCTTCATCTACGT 59.130 47.826 0.00 0.00 36.52 3.57
804 824 4.121317 AGTCTACGAGTCCTTCATCTACG 58.879 47.826 0.00 0.00 0.00 3.51
805 825 5.354792 ACAAGTCTACGAGTCCTTCATCTAC 59.645 44.000 0.00 0.00 0.00 2.59
807 827 4.337145 ACAAGTCTACGAGTCCTTCATCT 58.663 43.478 0.00 0.00 0.00 2.90
808 828 4.156190 TGACAAGTCTACGAGTCCTTCATC 59.844 45.833 1.53 0.00 0.00 2.92
809 829 4.079970 TGACAAGTCTACGAGTCCTTCAT 58.920 43.478 1.53 0.00 0.00 2.57
810 830 3.483421 TGACAAGTCTACGAGTCCTTCA 58.517 45.455 1.53 0.00 0.00 3.02
811 831 3.752222 TCTGACAAGTCTACGAGTCCTTC 59.248 47.826 1.53 0.00 0.00 3.46
812 832 3.502979 GTCTGACAAGTCTACGAGTCCTT 59.497 47.826 2.24 0.00 0.00 3.36
813 833 3.075884 GTCTGACAAGTCTACGAGTCCT 58.924 50.000 2.24 0.00 0.00 3.85
814 834 2.159680 CGTCTGACAAGTCTACGAGTCC 60.160 54.545 17.63 0.00 39.93 3.85
815 835 2.725452 GCGTCTGACAAGTCTACGAGTC 60.725 54.545 23.12 9.39 39.93 3.36
816 836 1.197264 GCGTCTGACAAGTCTACGAGT 59.803 52.381 23.12 0.00 39.93 4.18
817 837 1.465387 AGCGTCTGACAAGTCTACGAG 59.535 52.381 23.12 6.07 39.93 4.18
818 838 1.463831 GAGCGTCTGACAAGTCTACGA 59.536 52.381 23.12 7.67 39.93 3.43
819 839 1.465387 AGAGCGTCTGACAAGTCTACG 59.535 52.381 17.98 17.98 40.24 3.51
820 840 3.058155 TGAAGAGCGTCTGACAAGTCTAC 60.058 47.826 8.73 0.00 0.00 2.59
821 841 3.058155 GTGAAGAGCGTCTGACAAGTCTA 60.058 47.826 8.73 0.00 0.00 2.59
822 842 1.957177 TGAAGAGCGTCTGACAAGTCT 59.043 47.619 8.73 3.42 0.00 3.24
933 953 3.808984 CCCTGCTAGCTAAAAGGGG 57.191 57.895 24.20 16.84 44.94 4.79
953 974 6.451393 GCCGATATATATGTCAGATTCCTCC 58.549 44.000 9.79 0.00 0.00 4.30
1048 1069 1.679153 GTCGATGAGGAAGGAGGAGAC 59.321 57.143 0.00 0.00 0.00 3.36
1085 1106 1.738350 TCGTCGTCTCTCTGGTTGATC 59.262 52.381 0.00 0.00 0.00 2.92
1091 1115 1.132844 CGTGTCGTCGTCTCTCTGG 59.867 63.158 0.00 0.00 0.00 3.86
1093 1117 1.005275 TCCGTGTCGTCGTCTCTCT 60.005 57.895 0.00 0.00 0.00 3.10
1094 1118 1.013005 TCTCCGTGTCGTCGTCTCTC 61.013 60.000 0.00 0.00 0.00 3.20
1095 1119 1.005275 TCTCCGTGTCGTCGTCTCT 60.005 57.895 0.00 0.00 0.00 3.10
1096 1120 1.420702 CTCTCCGTGTCGTCGTCTC 59.579 63.158 0.00 0.00 0.00 3.36
1097 1121 2.033755 CCTCTCCGTGTCGTCGTCT 61.034 63.158 0.00 0.00 0.00 4.18
1098 1122 2.479650 CCTCTCCGTGTCGTCGTC 59.520 66.667 0.00 0.00 0.00 4.20
1099 1123 3.735029 GCCTCTCCGTGTCGTCGT 61.735 66.667 0.00 0.00 0.00 4.34
1100 1124 3.432588 AGCCTCTCCGTGTCGTCG 61.433 66.667 0.00 0.00 0.00 5.12
1263 1287 1.515521 CCTTGGTCTTCAACGGTGCC 61.516 60.000 0.00 0.00 0.00 5.01
1296 1320 4.101448 CCGTGCTGGGAAGGAGGG 62.101 72.222 0.00 0.00 0.00 4.30
1347 1371 2.947785 AGAGGGGGAGGACGAGGT 60.948 66.667 0.00 0.00 0.00 3.85
1443 1467 1.001406 CAAGAACCTCAGGAACTCGCT 59.999 52.381 0.00 0.00 34.60 4.93
1561 1585 2.654404 CGAAGTAGTAGCGCCGGC 60.654 66.667 19.07 19.07 40.37 6.13
1589 1613 3.472652 TCCTCGCTCTAGAGAACTCATC 58.527 50.000 24.24 2.62 40.57 2.92
1598 1622 2.553466 GCCCTCTAATCCTCGCTCTAGA 60.553 54.545 0.00 0.00 0.00 2.43
1599 1623 1.816224 GCCCTCTAATCCTCGCTCTAG 59.184 57.143 0.00 0.00 0.00 2.43
1600 1624 1.882780 CGCCCTCTAATCCTCGCTCTA 60.883 57.143 0.00 0.00 0.00 2.43
1610 1634 2.366972 AGCACCCCGCCCTCTAAT 60.367 61.111 0.00 0.00 44.04 1.73
1838 1862 4.283337 TCCAATACACCGGATCAGTAGAA 58.717 43.478 9.46 0.00 0.00 2.10
1844 1868 3.924114 ATGTTCCAATACACCGGATCA 57.076 42.857 9.46 0.00 35.90 2.92
1847 1871 3.008594 AGTGAATGTTCCAATACACCGGA 59.991 43.478 9.46 0.00 0.00 5.14
1852 1876 6.295249 TCTGACAAGTGAATGTTCCAATACA 58.705 36.000 0.00 0.00 32.57 2.29
1863 1887 3.365465 CGTCGAGTCTCTGACAAGTGAAT 60.365 47.826 18.48 0.00 34.60 2.57
1865 1889 1.531578 CGTCGAGTCTCTGACAAGTGA 59.468 52.381 18.48 0.00 34.60 3.41
1873 1897 2.795297 GAGCCCGTCGAGTCTCTG 59.205 66.667 0.00 0.00 0.00 3.35
1898 1922 2.138656 CTCCTTTGCAGCACAGTGGC 62.139 60.000 7.78 0.00 0.00 5.01
1950 1983 2.768492 GCTCTGGAAATGCGCCTGG 61.768 63.158 4.18 0.00 0.00 4.45
2013 2046 2.365370 CCTCCTGCTCTGCCTCCT 60.365 66.667 0.00 0.00 0.00 3.69
2047 2080 2.353704 CCAACAACAGCCGACAGAGATA 60.354 50.000 0.00 0.00 0.00 1.98
2051 2084 0.753867 TACCAACAACAGCCGACAGA 59.246 50.000 0.00 0.00 0.00 3.41
2053 2086 1.876799 CATTACCAACAACAGCCGACA 59.123 47.619 0.00 0.00 0.00 4.35
2062 2095 1.255882 CTGCAGGCCATTACCAACAA 58.744 50.000 5.01 0.00 0.00 2.83
2106 2139 4.803426 CAGCTCCTCCGTGGACGC 62.803 72.222 0.00 7.52 40.56 5.19
2107 2140 4.803426 GCAGCTCCTCCGTGGACG 62.803 72.222 0.00 0.00 40.56 4.79
2109 2142 4.704103 AGGCAGCTCCTCCGTGGA 62.704 66.667 0.00 0.00 43.20 4.02
2187 2220 2.899256 CTGCTCATCCCCCTTTCAAAAA 59.101 45.455 0.00 0.00 0.00 1.94
2188 2221 2.528564 CTGCTCATCCCCCTTTCAAAA 58.471 47.619 0.00 0.00 0.00 2.44
2189 2222 1.272648 CCTGCTCATCCCCCTTTCAAA 60.273 52.381 0.00 0.00 0.00 2.69
2190 2223 0.332632 CCTGCTCATCCCCCTTTCAA 59.667 55.000 0.00 0.00 0.00 2.69
2191 2224 0.846427 ACCTGCTCATCCCCCTTTCA 60.846 55.000 0.00 0.00 0.00 2.69
2192 2225 0.106967 GACCTGCTCATCCCCCTTTC 60.107 60.000 0.00 0.00 0.00 2.62
2193 2226 0.551131 AGACCTGCTCATCCCCCTTT 60.551 55.000 0.00 0.00 0.00 3.11
2194 2227 0.551131 AAGACCTGCTCATCCCCCTT 60.551 55.000 0.00 0.00 0.00 3.95
2195 2228 1.083706 AAGACCTGCTCATCCCCCT 59.916 57.895 0.00 0.00 0.00 4.79
2196 2229 1.225704 CAAGACCTGCTCATCCCCC 59.774 63.158 0.00 0.00 0.00 5.40
2197 2230 4.972875 CAAGACCTGCTCATCCCC 57.027 61.111 0.00 0.00 0.00 4.81
2462 2495 2.282701 CATTCGGTGAATGCAAAGGG 57.717 50.000 6.59 0.00 41.99 3.95
2470 2503 4.927978 TTTTCCACAACATTCGGTGAAT 57.072 36.364 0.00 0.00 37.18 2.57
2471 2504 4.927978 ATTTTCCACAACATTCGGTGAA 57.072 36.364 0.00 0.00 37.18 3.18
2472 2505 4.083003 GCTATTTTCCACAACATTCGGTGA 60.083 41.667 0.00 0.00 37.18 4.02
2473 2506 4.082787 AGCTATTTTCCACAACATTCGGTG 60.083 41.667 0.00 0.00 34.82 4.94
2474 2507 4.079253 AGCTATTTTCCACAACATTCGGT 58.921 39.130 0.00 0.00 0.00 4.69
2475 2508 4.701956 AGCTATTTTCCACAACATTCGG 57.298 40.909 0.00 0.00 0.00 4.30
2476 2509 5.698832 TCAAGCTATTTTCCACAACATTCG 58.301 37.500 0.00 0.00 0.00 3.34
2477 2510 6.922957 TGTTCAAGCTATTTTCCACAACATTC 59.077 34.615 0.00 0.00 0.00 2.67
2478 2511 6.815089 TGTTCAAGCTATTTTCCACAACATT 58.185 32.000 0.00 0.00 0.00 2.71
2479 2512 6.403866 TGTTCAAGCTATTTTCCACAACAT 57.596 33.333 0.00 0.00 0.00 2.71
2480 2513 5.843673 TGTTCAAGCTATTTTCCACAACA 57.156 34.783 0.00 0.00 0.00 3.33
2481 2514 5.462068 GGTTGTTCAAGCTATTTTCCACAAC 59.538 40.000 7.37 0.00 41.23 3.32
2482 2515 5.596845 GGTTGTTCAAGCTATTTTCCACAA 58.403 37.500 7.37 0.00 0.00 3.33
2483 2516 4.261405 CGGTTGTTCAAGCTATTTTCCACA 60.261 41.667 11.86 0.00 0.00 4.17
2484 2517 4.226761 CGGTTGTTCAAGCTATTTTCCAC 58.773 43.478 11.86 0.00 0.00 4.02
2485 2518 3.305064 GCGGTTGTTCAAGCTATTTTCCA 60.305 43.478 11.86 0.00 0.00 3.53
2486 2519 3.242518 GCGGTTGTTCAAGCTATTTTCC 58.757 45.455 11.86 0.00 0.00 3.13
2487 2520 3.242518 GGCGGTTGTTCAAGCTATTTTC 58.757 45.455 11.86 0.00 0.00 2.29
2488 2521 2.625790 TGGCGGTTGTTCAAGCTATTTT 59.374 40.909 11.86 0.00 0.00 1.82
2489 2522 2.235016 TGGCGGTTGTTCAAGCTATTT 58.765 42.857 11.86 0.00 0.00 1.40
2490 2523 1.904287 TGGCGGTTGTTCAAGCTATT 58.096 45.000 11.86 0.00 0.00 1.73
2491 2524 2.128771 ATGGCGGTTGTTCAAGCTAT 57.871 45.000 11.86 2.51 0.00 2.97
2492 2525 1.810151 GAATGGCGGTTGTTCAAGCTA 59.190 47.619 11.86 0.42 0.00 3.32
2493 2526 0.598065 GAATGGCGGTTGTTCAAGCT 59.402 50.000 11.86 0.00 0.00 3.74
2494 2527 0.313672 TGAATGGCGGTTGTTCAAGC 59.686 50.000 4.88 4.88 0.00 4.01
2495 2528 1.608590 ACTGAATGGCGGTTGTTCAAG 59.391 47.619 0.00 0.00 32.08 3.02
2496 2529 1.686355 ACTGAATGGCGGTTGTTCAA 58.314 45.000 0.00 0.00 32.08 2.69
2497 2530 1.686355 AACTGAATGGCGGTTGTTCA 58.314 45.000 0.00 0.00 44.30 3.18
2498 2531 2.793278 AAACTGAATGGCGGTTGTTC 57.207 45.000 0.00 0.00 45.23 3.18
2499 2532 4.555262 CAATAAACTGAATGGCGGTTGTT 58.445 39.130 0.00 0.00 45.23 2.83
2500 2533 3.056891 CCAATAAACTGAATGGCGGTTGT 60.057 43.478 0.00 0.00 45.23 3.32
2501 2534 3.192422 TCCAATAAACTGAATGGCGGTTG 59.808 43.478 0.00 0.00 45.23 3.77
2503 2536 3.080300 TCCAATAAACTGAATGGCGGT 57.920 42.857 0.00 0.00 37.85 5.68
2504 2537 4.362279 CATTCCAATAAACTGAATGGCGG 58.638 43.478 0.00 0.00 40.91 6.13
2510 2543 9.120538 GCTCTTATACCATTCCAATAAACTGAA 57.879 33.333 0.00 0.00 0.00 3.02
2511 2544 8.271458 TGCTCTTATACCATTCCAATAAACTGA 58.729 33.333 0.00 0.00 0.00 3.41
2512 2545 8.450578 TGCTCTTATACCATTCCAATAAACTG 57.549 34.615 0.00 0.00 0.00 3.16
2513 2546 9.289782 GATGCTCTTATACCATTCCAATAAACT 57.710 33.333 0.00 0.00 0.00 2.66
2514 2547 9.289782 AGATGCTCTTATACCATTCCAATAAAC 57.710 33.333 0.00 0.00 0.00 2.01
2515 2548 9.866655 AAGATGCTCTTATACCATTCCAATAAA 57.133 29.630 0.00 0.00 34.42 1.40
2516 2549 9.507329 GAAGATGCTCTTATACCATTCCAATAA 57.493 33.333 0.00 0.00 36.73 1.40
2517 2550 8.659527 TGAAGATGCTCTTATACCATTCCAATA 58.340 33.333 0.00 0.00 36.73 1.90
2518 2551 7.520798 TGAAGATGCTCTTATACCATTCCAAT 58.479 34.615 0.00 0.00 36.73 3.16
2519 2552 6.899089 TGAAGATGCTCTTATACCATTCCAA 58.101 36.000 0.00 0.00 36.73 3.53
2520 2553 6.499106 TGAAGATGCTCTTATACCATTCCA 57.501 37.500 0.00 0.00 36.73 3.53
2521 2554 5.411053 GCTGAAGATGCTCTTATACCATTCC 59.589 44.000 0.00 0.00 36.73 3.01
2522 2555 5.411053 GGCTGAAGATGCTCTTATACCATTC 59.589 44.000 0.00 0.00 36.73 2.67
2523 2556 5.312079 GGCTGAAGATGCTCTTATACCATT 58.688 41.667 0.00 0.00 36.73 3.16
2524 2557 4.562347 CGGCTGAAGATGCTCTTATACCAT 60.562 45.833 0.00 0.00 36.73 3.55
2525 2558 3.243873 CGGCTGAAGATGCTCTTATACCA 60.244 47.826 0.00 0.00 36.73 3.25
2526 2559 3.243907 ACGGCTGAAGATGCTCTTATACC 60.244 47.826 0.00 1.45 36.73 2.73
2527 2560 3.983741 ACGGCTGAAGATGCTCTTATAC 58.016 45.455 0.00 0.00 36.73 1.47
2528 2561 4.621991 GAACGGCTGAAGATGCTCTTATA 58.378 43.478 0.00 0.00 36.73 0.98
2577 2610 3.322466 CCAGTTCGCCCCCAGACT 61.322 66.667 0.00 0.00 0.00 3.24
2609 2642 3.458163 CGAGCTAGGTCGCCCCAA 61.458 66.667 29.05 0.00 34.66 4.12
2659 2694 2.294791 ACGACCAAATTCGAAATTGCCA 59.705 40.909 18.53 0.00 41.78 4.92
2722 2766 6.295719 ACTATTTATCTGGTCACCGAACTT 57.704 37.500 0.00 0.00 0.00 2.66
2730 2774 3.035363 TGCCGGACTATTTATCTGGTCA 58.965 45.455 5.05 0.00 43.60 4.02
2733 2777 8.786826 TTTTATATGCCGGACTATTTATCTGG 57.213 34.615 5.05 0.00 44.41 3.86
2765 2811 1.007734 GCGTCCAGACTTGTGACGA 60.008 57.895 18.22 0.00 44.01 4.20
2818 2864 3.017314 GCCGACTATGACGACGCG 61.017 66.667 3.53 3.53 0.00 6.01
2888 2934 2.750237 CCAGCGGTACCAAAGCCC 60.750 66.667 13.54 0.00 0.00 5.19
3076 4159 2.432628 CTTCCACGTCGCACCTCC 60.433 66.667 0.00 0.00 0.00 4.30
3145 4228 1.985447 CTACTCGTCGCCGGCTTACA 61.985 60.000 26.68 11.80 33.95 2.41
3230 4313 0.763223 ACTCCCAACGTCACCTTCCT 60.763 55.000 0.00 0.00 0.00 3.36
3274 4358 3.203412 CCGTCGCCGAGCTACTCT 61.203 66.667 0.00 0.00 35.63 3.24
3350 4434 4.208686 GTACGAGCCCTGGAGCCG 62.209 72.222 0.00 5.97 34.13 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.