Multiple sequence alignment - TraesCS2A01G305200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G305200 chr2A 100.000 5299 0 0 1 5299 524844743 524839445 0.000000e+00 9786
1 TraesCS2A01G305200 chr2A 84.247 584 69 21 1 566 764721309 764721887 1.000000e-151 547
2 TraesCS2A01G305200 chr2A 83.197 613 75 20 81 672 84004616 84005221 2.170000e-148 536
3 TraesCS2A01G305200 chr2B 94.358 3474 144 23 1058 4520 459578830 459575398 0.000000e+00 5282
4 TraesCS2A01G305200 chr2B 80.056 717 89 27 6 676 734912117 734912825 2.870000e-132 483
5 TraesCS2A01G305200 chr2B 93.976 166 8 2 890 1053 459579080 459578915 3.170000e-62 250
6 TraesCS2A01G305200 chr2D 95.858 2366 85 8 1058 3417 388083480 388081122 0.000000e+00 3814
7 TraesCS2A01G305200 chr2D 97.042 1217 36 0 3416 4632 388080860 388079644 0.000000e+00 2049
8 TraesCS2A01G305200 chr2D 86.448 487 38 18 4631 5093 388079618 388079136 4.730000e-140 508
9 TraesCS2A01G305200 chr2D 93.780 209 13 0 5091 5299 388058862 388058654 1.110000e-81 315
10 TraesCS2A01G305200 chr2D 89.100 211 9 6 859 1055 388083773 388083563 3.170000e-62 250
11 TraesCS2A01G305200 chr2D 86.275 153 15 4 2878 3025 163017827 163017676 1.530000e-35 161
12 TraesCS2A01G305200 chr2D 86.395 147 13 5 2877 3018 249890049 249890193 2.560000e-33 154
13 TraesCS2A01G305200 chr1D 84.098 654 75 19 41 672 41748422 41749068 5.870000e-169 604
14 TraesCS2A01G305200 chr1D 82.051 702 94 25 1 680 475956899 475956208 2.140000e-158 569
15 TraesCS2A01G305200 chr1D 80.912 702 87 27 1 672 439468648 439469332 1.320000e-140 510
16 TraesCS2A01G305200 chr4A 82.684 693 92 23 2 672 620945016 620944330 1.640000e-164 590
17 TraesCS2A01G305200 chr4A 86.667 150 14 3 2877 3021 703266002 703265854 1.530000e-35 161
18 TraesCS2A01G305200 chr5A 82.287 717 84 29 1 685 639092004 639091299 9.890000e-162 580
19 TraesCS2A01G305200 chr5A 81.753 696 83 33 1 672 423550600 423551275 4.670000e-150 542
20 TraesCS2A01G305200 chr7A 81.199 617 88 19 75 672 204158501 204159108 6.210000e-129 472
21 TraesCS2A01G305200 chr7D 88.811 143 12 1 2881 3019 34373329 34373471 7.060000e-39 172
22 TraesCS2A01G305200 chr7B 88.028 142 13 1 2881 3018 44939565 44939706 1.180000e-36 165
23 TraesCS2A01G305200 chr7B 85.430 151 14 3 2876 3018 575379345 575379495 3.310000e-32 150
24 TraesCS2A01G305200 chr1B 88.321 137 12 1 2881 3013 268400027 268400163 1.530000e-35 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G305200 chr2A 524839445 524844743 5298 True 9786.00 9786 100.000 1 5299 1 chr2A.!!$R1 5298
1 TraesCS2A01G305200 chr2A 764721309 764721887 578 False 547.00 547 84.247 1 566 1 chr2A.!!$F2 565
2 TraesCS2A01G305200 chr2A 84004616 84005221 605 False 536.00 536 83.197 81 672 1 chr2A.!!$F1 591
3 TraesCS2A01G305200 chr2B 459575398 459579080 3682 True 2766.00 5282 94.167 890 4520 2 chr2B.!!$R1 3630
4 TraesCS2A01G305200 chr2B 734912117 734912825 708 False 483.00 483 80.056 6 676 1 chr2B.!!$F1 670
5 TraesCS2A01G305200 chr2D 388079136 388083773 4637 True 1655.25 3814 92.112 859 5093 4 chr2D.!!$R3 4234
6 TraesCS2A01G305200 chr1D 41748422 41749068 646 False 604.00 604 84.098 41 672 1 chr1D.!!$F1 631
7 TraesCS2A01G305200 chr1D 475956208 475956899 691 True 569.00 569 82.051 1 680 1 chr1D.!!$R1 679
8 TraesCS2A01G305200 chr1D 439468648 439469332 684 False 510.00 510 80.912 1 672 1 chr1D.!!$F2 671
9 TraesCS2A01G305200 chr4A 620944330 620945016 686 True 590.00 590 82.684 2 672 1 chr4A.!!$R1 670
10 TraesCS2A01G305200 chr5A 639091299 639092004 705 True 580.00 580 82.287 1 685 1 chr5A.!!$R1 684
11 TraesCS2A01G305200 chr5A 423550600 423551275 675 False 542.00 542 81.753 1 672 1 chr5A.!!$F1 671
12 TraesCS2A01G305200 chr7A 204158501 204159108 607 False 472.00 472 81.199 75 672 1 chr7A.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 1015 0.040336 GTGAGTCGCGTCTGTTGAGA 60.040 55.0 11.38 0.00 0.00 3.27 F
965 1194 0.117340 AGAACCCTACTCAGCCACCT 59.883 55.0 0.00 0.00 0.00 4.00 F
1256 1565 1.094785 GCAAGCTTCCTCCGCATTAA 58.905 50.0 0.00 0.00 0.00 1.40 F
2691 3001 0.466007 TTGTTGCTGAGCTTCCTGCA 60.466 50.0 5.83 3.28 45.94 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 2133 1.152984 CACCACAGGGCAGACACAA 60.153 57.895 0.00 0.0 37.90 3.33 R
1846 2156 1.394917 CTCAGCTACACATTTCGCCAC 59.605 52.381 0.00 0.0 0.00 5.01 R
2795 3105 1.619654 TTGCACAGGAACATGAAGGG 58.380 50.000 0.00 0.0 0.00 3.95 R
4607 5189 0.036164 CCGGACAATTCAGGTGACCA 59.964 55.000 3.63 0.0 32.65 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
302 442 2.325583 AAGCAAAACCGTGACTCTCA 57.674 45.000 0.00 0.00 0.00 3.27
382 533 1.067060 GAAAGCAAAACCGTGCCTCTT 59.933 47.619 0.00 0.00 46.14 2.85
488 667 1.738350 GAAAAGCTAAGGAAGACCGGC 59.262 52.381 0.00 0.00 41.83 6.13
513 697 3.965379 AACCAAAACGTCAAAAACCCT 57.035 38.095 0.00 0.00 0.00 4.34
518 705 6.408035 ACCAAAACGTCAAAAACCCTAAAAT 58.592 32.000 0.00 0.00 0.00 1.82
521 708 9.047371 CCAAAACGTCAAAAACCCTAAAATAAT 57.953 29.630 0.00 0.00 0.00 1.28
559 773 6.255887 TGAAAACGTGTGCGGAAAAATAAAAT 59.744 30.769 0.00 0.00 43.45 1.82
607 821 0.869068 CAACACGTGGCGAATGGTTA 59.131 50.000 21.57 0.00 0.00 2.85
609 823 1.595466 ACACGTGGCGAATGGTTAAA 58.405 45.000 21.57 0.00 0.00 1.52
611 825 2.358267 ACACGTGGCGAATGGTTAAAAA 59.642 40.909 21.57 0.00 0.00 1.94
617 831 1.958417 CGAATGGTTAAAAACGCGCT 58.042 45.000 5.73 0.00 0.00 5.92
625 839 3.303263 GGTTAAAAACGCGCTAAGTGACA 60.303 43.478 5.73 0.00 0.00 3.58
626 840 4.273274 GTTAAAAACGCGCTAAGTGACAA 58.727 39.130 5.73 0.00 0.00 3.18
632 846 1.258982 CGCGCTAAGTGACAATGATCC 59.741 52.381 5.56 0.00 0.00 3.36
640 854 2.234661 AGTGACAATGATCCTTGCGAGA 59.765 45.455 10.29 0.00 0.00 4.04
644 858 2.499289 ACAATGATCCTTGCGAGACTCT 59.501 45.455 10.29 0.00 0.00 3.24
672 887 1.725164 GCGCTCGTTAACTAGTTGCTT 59.275 47.619 18.56 0.00 0.00 3.91
676 891 3.124806 GCTCGTTAACTAGTTGCTTTCCC 59.875 47.826 18.56 0.00 0.00 3.97
677 892 4.312443 CTCGTTAACTAGTTGCTTTCCCA 58.688 43.478 18.56 0.00 0.00 4.37
678 893 4.901868 TCGTTAACTAGTTGCTTTCCCAT 58.098 39.130 18.56 0.00 0.00 4.00
679 894 5.310451 TCGTTAACTAGTTGCTTTCCCATT 58.690 37.500 18.56 0.00 0.00 3.16
680 895 5.410439 TCGTTAACTAGTTGCTTTCCCATTC 59.590 40.000 18.56 0.00 0.00 2.67
681 896 5.391629 CGTTAACTAGTTGCTTTCCCATTCC 60.392 44.000 18.56 0.00 0.00 3.01
682 897 4.388577 AACTAGTTGCTTTCCCATTCCT 57.611 40.909 7.48 0.00 0.00 3.36
683 898 4.388577 ACTAGTTGCTTTCCCATTCCTT 57.611 40.909 0.00 0.00 0.00 3.36
684 899 4.336280 ACTAGTTGCTTTCCCATTCCTTC 58.664 43.478 0.00 0.00 0.00 3.46
685 900 2.162681 AGTTGCTTTCCCATTCCTTCG 58.837 47.619 0.00 0.00 0.00 3.79
686 901 2.159382 GTTGCTTTCCCATTCCTTCGA 58.841 47.619 0.00 0.00 0.00 3.71
687 902 2.755103 GTTGCTTTCCCATTCCTTCGAT 59.245 45.455 0.00 0.00 0.00 3.59
688 903 3.924114 TGCTTTCCCATTCCTTCGATA 57.076 42.857 0.00 0.00 0.00 2.92
689 904 3.541632 TGCTTTCCCATTCCTTCGATAC 58.458 45.455 0.00 0.00 0.00 2.24
690 905 2.879026 GCTTTCCCATTCCTTCGATACC 59.121 50.000 0.00 0.00 0.00 2.73
691 906 3.684413 GCTTTCCCATTCCTTCGATACCA 60.684 47.826 0.00 0.00 0.00 3.25
692 907 3.838244 TTCCCATTCCTTCGATACCAG 57.162 47.619 0.00 0.00 0.00 4.00
693 908 1.416401 TCCCATTCCTTCGATACCAGC 59.584 52.381 0.00 0.00 0.00 4.85
694 909 1.140852 CCCATTCCTTCGATACCAGCA 59.859 52.381 0.00 0.00 0.00 4.41
695 910 2.421388 CCCATTCCTTCGATACCAGCAA 60.421 50.000 0.00 0.00 0.00 3.91
696 911 3.278574 CCATTCCTTCGATACCAGCAAA 58.721 45.455 0.00 0.00 0.00 3.68
697 912 3.885297 CCATTCCTTCGATACCAGCAAAT 59.115 43.478 0.00 0.00 0.00 2.32
698 913 4.261322 CCATTCCTTCGATACCAGCAAATG 60.261 45.833 0.00 0.00 0.00 2.32
706 921 3.682885 CCAGCAAATGGGCGCACA 61.683 61.111 18.16 18.16 46.36 4.57
707 922 2.431260 CAGCAAATGGGCGCACAC 60.431 61.111 18.24 0.71 39.27 3.82
708 923 3.683937 AGCAAATGGGCGCACACC 61.684 61.111 18.24 3.74 39.27 4.16
718 933 4.742201 CGCACACCCACTCCTCCG 62.742 72.222 0.00 0.00 0.00 4.63
720 935 4.742201 CACACCCACTCCTCCGCG 62.742 72.222 0.00 0.00 0.00 6.46
737 952 2.679996 GCTGGGCCGGACCATTTT 60.680 61.111 34.38 0.00 40.36 1.82
738 953 2.282783 GCTGGGCCGGACCATTTTT 61.283 57.895 34.38 0.00 40.36 1.94
739 954 1.890174 CTGGGCCGGACCATTTTTC 59.110 57.895 34.38 0.00 40.36 2.29
740 955 0.611896 CTGGGCCGGACCATTTTTCT 60.612 55.000 34.38 0.00 40.36 2.52
741 956 0.897863 TGGGCCGGACCATTTTTCTG 60.898 55.000 30.39 0.00 42.05 3.02
742 957 0.898326 GGGCCGGACCATTTTTCTGT 60.898 55.000 25.88 0.00 42.05 3.41
743 958 0.966179 GGCCGGACCATTTTTCTGTT 59.034 50.000 5.05 0.00 38.86 3.16
744 959 1.343142 GGCCGGACCATTTTTCTGTTT 59.657 47.619 5.05 0.00 38.86 2.83
745 960 2.224185 GGCCGGACCATTTTTCTGTTTT 60.224 45.455 5.05 0.00 38.86 2.43
746 961 3.462982 GCCGGACCATTTTTCTGTTTTT 58.537 40.909 5.05 0.00 0.00 1.94
771 986 8.871686 TTTTTCTAAAATCCTGCAAGAAAGTC 57.128 30.769 7.36 0.00 34.07 3.01
772 987 5.862924 TCTAAAATCCTGCAAGAAAGTCG 57.137 39.130 0.00 0.00 34.07 4.18
773 988 2.997485 AAATCCTGCAAGAAAGTCGC 57.003 45.000 0.00 0.00 34.07 5.19
774 989 0.798776 AATCCTGCAAGAAAGTCGCG 59.201 50.000 0.00 0.00 34.07 5.87
775 990 1.639298 ATCCTGCAAGAAAGTCGCGC 61.639 55.000 0.00 0.00 34.07 6.86
776 991 2.202096 CTGCAAGAAAGTCGCGCG 60.202 61.111 26.76 26.76 34.07 6.86
777 992 4.368808 TGCAAGAAAGTCGCGCGC 62.369 61.111 27.95 23.91 0.00 6.86
794 1009 3.667976 CGATGTGAGTCGCGTCTG 58.332 61.111 20.68 12.10 34.56 3.51
795 1010 1.154207 CGATGTGAGTCGCGTCTGT 60.154 57.895 20.68 0.00 34.56 3.41
796 1011 0.729478 CGATGTGAGTCGCGTCTGTT 60.729 55.000 20.68 0.00 34.56 3.16
797 1012 0.710567 GATGTGAGTCGCGTCTGTTG 59.289 55.000 17.00 0.00 0.00 3.33
798 1013 0.313987 ATGTGAGTCGCGTCTGTTGA 59.686 50.000 11.38 0.00 0.00 3.18
799 1014 0.317854 TGTGAGTCGCGTCTGTTGAG 60.318 55.000 11.38 0.00 0.00 3.02
800 1015 0.040336 GTGAGTCGCGTCTGTTGAGA 60.040 55.000 11.38 0.00 0.00 3.27
801 1016 0.881796 TGAGTCGCGTCTGTTGAGAT 59.118 50.000 11.38 0.00 0.00 2.75
802 1017 2.081462 TGAGTCGCGTCTGTTGAGATA 58.919 47.619 11.38 0.00 0.00 1.98
803 1018 2.096013 TGAGTCGCGTCTGTTGAGATAG 59.904 50.000 11.38 0.00 0.00 2.08
804 1019 1.192793 GTCGCGTCTGTTGAGATAGC 58.807 55.000 5.77 0.00 33.71 2.97
805 1020 1.095600 TCGCGTCTGTTGAGATAGCT 58.904 50.000 5.77 0.00 34.44 3.32
806 1021 1.195347 CGCGTCTGTTGAGATAGCTG 58.805 55.000 0.00 0.00 34.44 4.24
807 1022 1.565305 GCGTCTGTTGAGATAGCTGG 58.435 55.000 0.00 0.00 34.04 4.85
808 1023 1.804372 GCGTCTGTTGAGATAGCTGGG 60.804 57.143 0.00 0.00 34.04 4.45
809 1024 1.804372 CGTCTGTTGAGATAGCTGGGC 60.804 57.143 0.00 0.00 0.00 5.36
810 1025 0.833287 TCTGTTGAGATAGCTGGGCC 59.167 55.000 0.00 0.00 0.00 5.80
811 1026 0.531532 CTGTTGAGATAGCTGGGCCG 60.532 60.000 0.00 0.00 0.00 6.13
812 1027 1.227674 GTTGAGATAGCTGGGCCGG 60.228 63.158 8.39 8.39 0.00 6.13
813 1028 1.689233 TTGAGATAGCTGGGCCGGT 60.689 57.895 15.16 9.68 0.00 5.28
814 1029 1.686325 TTGAGATAGCTGGGCCGGTC 61.686 60.000 15.16 0.00 0.00 4.79
815 1030 2.844839 AGATAGCTGGGCCGGTCC 60.845 66.667 21.35 21.35 0.00 4.46
816 1031 4.301027 GATAGCTGGGCCGGTCCG 62.301 72.222 22.68 16.59 34.94 4.79
835 1050 4.379243 CAGGGGTCTGCGCGAAGT 62.379 66.667 15.21 0.00 33.86 3.01
836 1051 4.070552 AGGGGTCTGCGCGAAGTC 62.071 66.667 15.21 8.65 0.00 3.01
838 1053 4.415332 GGGTCTGCGCGAAGTCGA 62.415 66.667 15.21 0.00 43.02 4.20
839 1054 2.876645 GGTCTGCGCGAAGTCGAG 60.877 66.667 15.21 2.00 43.02 4.04
840 1055 2.176055 GTCTGCGCGAAGTCGAGA 59.824 61.111 15.21 0.00 41.67 4.04
841 1056 1.865622 GTCTGCGCGAAGTCGAGAG 60.866 63.158 15.21 3.65 41.67 3.20
842 1057 2.177038 CTGCGCGAAGTCGAGAGT 59.823 61.111 12.10 0.00 41.67 3.24
843 1058 1.442857 CTGCGCGAAGTCGAGAGTT 60.443 57.895 12.10 0.00 41.67 3.01
844 1059 1.399504 CTGCGCGAAGTCGAGAGTTC 61.400 60.000 12.10 9.91 41.67 3.01
845 1060 2.153322 GCGCGAAGTCGAGAGTTCC 61.153 63.158 12.10 6.95 41.67 3.62
846 1061 1.514443 CGCGAAGTCGAGAGTTCCC 60.514 63.158 0.00 5.45 41.67 3.97
847 1062 1.884444 GCGAAGTCGAGAGTTCCCT 59.116 57.895 13.28 0.00 43.02 4.20
848 1063 0.456995 GCGAAGTCGAGAGTTCCCTG 60.457 60.000 13.28 3.35 43.02 4.45
849 1064 0.882474 CGAAGTCGAGAGTTCCCTGT 59.118 55.000 13.28 0.00 43.02 4.00
850 1065 1.269998 CGAAGTCGAGAGTTCCCTGTT 59.730 52.381 13.28 0.00 43.02 3.16
851 1066 2.288273 CGAAGTCGAGAGTTCCCTGTTT 60.288 50.000 13.28 0.00 43.02 2.83
852 1067 3.729966 GAAGTCGAGAGTTCCCTGTTTT 58.270 45.455 9.00 0.00 35.30 2.43
853 1068 3.113260 AGTCGAGAGTTCCCTGTTTTG 57.887 47.619 0.00 0.00 0.00 2.44
854 1069 2.143925 GTCGAGAGTTCCCTGTTTTGG 58.856 52.381 0.00 0.00 0.00 3.28
855 1070 1.766496 TCGAGAGTTCCCTGTTTTGGT 59.234 47.619 0.00 0.00 0.00 3.67
856 1071 2.171870 TCGAGAGTTCCCTGTTTTGGTT 59.828 45.455 0.00 0.00 0.00 3.67
857 1072 3.388676 TCGAGAGTTCCCTGTTTTGGTTA 59.611 43.478 0.00 0.00 0.00 2.85
885 1100 4.989279 AACTAAAATGCCCATGTAGCAG 57.011 40.909 12.56 2.66 44.90 4.24
894 1109 1.078497 CATGTAGCAGCCCGTTCCA 60.078 57.895 0.00 0.00 0.00 3.53
902 1131 4.986708 GCCCGTTCCAAAGGCCCA 62.987 66.667 0.00 0.00 41.00 5.36
965 1194 0.117340 AGAACCCTACTCAGCCACCT 59.883 55.000 0.00 0.00 0.00 4.00
1179 1488 6.053650 TGATCTGATTTGCTTCCTGATACTG 58.946 40.000 0.00 0.00 0.00 2.74
1256 1565 1.094785 GCAAGCTTCCTCCGCATTAA 58.905 50.000 0.00 0.00 0.00 1.40
1265 1574 3.230976 TCCTCCGCATTAATCTCTGCTA 58.769 45.455 0.00 0.00 36.23 3.49
1284 1593 7.500141 TCTGCTATCACTTGTGCTGATTATTA 58.500 34.615 0.00 0.00 30.76 0.98
1286 1595 9.428097 CTGCTATCACTTGTGCTGATTATTATA 57.572 33.333 0.00 0.00 30.76 0.98
1392 1702 4.363991 AACAATTCTTCAGGAGAGCTGT 57.636 40.909 0.00 0.00 35.37 4.40
1451 1761 5.192176 AGTAGTGCTTAGTAGTACCTGGTC 58.808 45.833 0.63 0.00 37.68 4.02
1579 1889 3.474570 ATGTCGGGGCAGCTCTCC 61.475 66.667 0.00 0.00 0.00 3.71
1662 1972 7.216317 CACGTATGCTTATAGTTTCTTGTTTGC 59.784 37.037 0.00 0.00 0.00 3.68
1686 1996 9.177608 TGCTTATTTCTGTATTTCAGTATGCTT 57.822 29.630 0.00 0.00 43.97 3.91
1731 2041 2.294512 GCAACTAAGCTGGTTCTGCTTT 59.705 45.455 15.12 0.00 44.04 3.51
1846 2156 2.270205 CTGCCCTGTGGTGCCTAG 59.730 66.667 0.00 0.00 0.00 3.02
1879 2189 6.008331 TGTGTAGCTGAGGTATACGGATAAT 58.992 40.000 12.68 0.00 31.92 1.28
2160 2470 5.515886 CCCTCACTTGATTTACCCAAGGTAA 60.516 44.000 2.05 2.05 45.16 2.85
2191 2501 4.818005 TCATCATGTGCATCAGTTGTATCC 59.182 41.667 0.00 0.00 0.00 2.59
2202 2512 5.178096 TCAGTTGTATCCCACACATTGAT 57.822 39.130 0.00 0.00 36.69 2.57
2205 2515 7.171653 TCAGTTGTATCCCACACATTGATAAA 58.828 34.615 0.00 0.00 36.69 1.40
2382 2692 3.895656 AGACAGCTTGGTTAGTGTACTGA 59.104 43.478 0.00 0.00 0.00 3.41
2383 2693 3.988517 GACAGCTTGGTTAGTGTACTGAC 59.011 47.826 0.00 0.00 0.00 3.51
2499 2809 1.527311 GTTGTCTCAGAAGGTGTTCGC 59.473 52.381 0.00 0.00 37.79 4.70
2691 3001 0.466007 TTGTTGCTGAGCTTCCTGCA 60.466 50.000 5.83 3.28 45.94 4.41
2736 3046 4.682021 AGGGATGACAAATCCTCCTTTT 57.318 40.909 4.46 0.00 39.12 2.27
2795 3105 4.495844 GCGCCATCCTTGTGTTTATACTTC 60.496 45.833 0.00 0.00 0.00 3.01
2851 3161 5.633601 GCTGTTTTAAAGGTATGCTTGGAAC 59.366 40.000 0.00 0.00 0.00 3.62
2854 3164 6.775629 TGTTTTAAAGGTATGCTTGGAACTCT 59.224 34.615 0.00 0.00 0.00 3.24
3069 3384 7.713764 ATTTTTGACTATTTCTGTGTTTGCC 57.286 32.000 0.00 0.00 0.00 4.52
3124 3439 4.692625 CAGTGAGTTCAGAATGGTAGTTGG 59.307 45.833 0.00 0.00 36.16 3.77
3204 3519 3.131577 TCCTGGTACGGTAGCAAGTTATG 59.868 47.826 19.34 7.98 35.53 1.90
3381 3696 6.356556 TCACATATCACAGTTTTATCCCAGG 58.643 40.000 0.00 0.00 0.00 4.45
3391 3706 1.348064 TTATCCCAGGCCAGGTATCG 58.652 55.000 13.97 0.00 0.00 2.92
3694 4272 5.862323 GCTCATGCCAGATGCTAAATTTATG 59.138 40.000 0.00 0.00 42.00 1.90
3818 4396 0.575859 CAGCTGATGCGAAGATCACG 59.424 55.000 8.42 7.74 45.42 4.35
3884 4462 2.351641 CGTTGCAATAAAGGAAGCAGCA 60.352 45.455 0.59 0.00 37.97 4.41
3935 4513 3.535280 AAAAACAGCCCAAATCGTGTT 57.465 38.095 0.00 0.00 34.60 3.32
4021 4599 2.877786 CACAACAATGTACTCCACAGCA 59.122 45.455 0.00 0.00 41.51 4.41
4031 4609 1.171308 CTCCACAGCAATGTGAAGGG 58.829 55.000 9.86 0.00 42.02 3.95
4061 4639 1.599419 GCACCGACAAATTGTGGTGAC 60.599 52.381 32.07 24.07 44.64 3.67
4132 4710 0.469144 GGGGCAGGGAAAACAAGTGA 60.469 55.000 0.00 0.00 0.00 3.41
4248 4826 1.599419 CCGTAAGCTTTGCCACAACAC 60.599 52.381 3.20 0.00 0.00 3.32
4250 4828 2.546368 CGTAAGCTTTGCCACAACACTA 59.454 45.455 3.20 0.00 0.00 2.74
4308 4886 1.995626 TCCTCCTAAGGCTGGTGGC 60.996 63.158 7.02 0.00 43.02 5.01
4365 4944 5.559427 TTTCATGTGGAACCATCGTATTG 57.441 39.130 0.00 0.00 34.56 1.90
4387 4966 5.953183 TGCCAAGTTATGTTGCTGAAATAG 58.047 37.500 0.00 0.00 0.00 1.73
4514 5096 2.415357 CGGCGTTTAAAGTTGCATCCAT 60.415 45.455 0.00 0.00 0.00 3.41
4557 5139 1.133869 GTCGGGGCGTTTGAAATCG 59.866 57.895 0.00 0.00 0.00 3.34
4559 5141 1.154301 CGGGGCGTTTGAAATCGTG 60.154 57.895 2.91 0.00 0.00 4.35
4561 5143 1.284408 GGGCGTTTGAAATCGTGCA 59.716 52.632 0.00 0.00 0.00 4.57
4563 5145 1.668628 GGGCGTTTGAAATCGTGCAAT 60.669 47.619 0.00 0.00 0.00 3.56
4605 5187 4.941263 TCGAATACTTTTAGCCATGCAACT 59.059 37.500 0.00 0.00 0.00 3.16
4607 5189 5.391950 CGAATACTTTTAGCCATGCAACTGT 60.392 40.000 0.00 0.00 0.00 3.55
4675 5284 2.885113 CGCCACATCGGACTCTGA 59.115 61.111 0.00 0.00 36.56 3.27
4681 5329 0.689080 ACATCGGACTCTGATGCCCT 60.689 55.000 22.89 5.86 45.61 5.19
4704 5352 2.231380 TCCACCCAAAGCCCCTCTC 61.231 63.158 0.00 0.00 0.00 3.20
4734 5382 2.125350 CTCGCTCCAGAACCCTGC 60.125 66.667 0.00 0.00 39.07 4.85
4752 5400 3.630204 GCATCGCGTCCATACCAG 58.370 61.111 5.77 0.00 0.00 4.00
4753 5401 1.227263 GCATCGCGTCCATACCAGT 60.227 57.895 5.77 0.00 0.00 4.00
4754 5402 0.810031 GCATCGCGTCCATACCAGTT 60.810 55.000 5.77 0.00 0.00 3.16
4755 5403 1.537348 GCATCGCGTCCATACCAGTTA 60.537 52.381 5.77 0.00 0.00 2.24
4756 5404 2.394708 CATCGCGTCCATACCAGTTAG 58.605 52.381 5.77 0.00 0.00 2.34
4757 5405 1.753930 TCGCGTCCATACCAGTTAGA 58.246 50.000 5.77 0.00 0.00 2.10
4758 5406 1.674441 TCGCGTCCATACCAGTTAGAG 59.326 52.381 5.77 0.00 0.00 2.43
4759 5407 1.854227 GCGTCCATACCAGTTAGAGC 58.146 55.000 0.00 0.00 0.00 4.09
4760 5408 1.864435 GCGTCCATACCAGTTAGAGCG 60.864 57.143 0.00 0.00 0.00 5.03
4761 5409 1.269102 CGTCCATACCAGTTAGAGCGG 60.269 57.143 0.00 0.00 0.00 5.52
4762 5410 2.029623 GTCCATACCAGTTAGAGCGGA 58.970 52.381 0.00 0.00 0.00 5.54
4763 5411 2.029623 TCCATACCAGTTAGAGCGGAC 58.970 52.381 0.00 0.00 0.00 4.79
4764 5412 1.754803 CCATACCAGTTAGAGCGGACA 59.245 52.381 0.00 0.00 0.00 4.02
4765 5413 2.365617 CCATACCAGTTAGAGCGGACAT 59.634 50.000 0.00 0.00 0.00 3.06
4766 5414 3.553096 CCATACCAGTTAGAGCGGACATC 60.553 52.174 0.00 0.00 0.00 3.06
4767 5415 0.456221 ACCAGTTAGAGCGGACATCG 59.544 55.000 0.00 0.00 42.76 3.84
4777 5425 2.952273 CGGACATCGCGTTCATACA 58.048 52.632 5.77 0.00 0.00 2.29
4787 5435 2.035674 CGCGTTCATACAAGTTAGAGCG 60.036 50.000 0.00 0.00 37.69 5.03
4791 5439 3.416119 TCATACAAGTTAGAGCGGACG 57.584 47.619 0.00 0.00 0.00 4.79
4866 5514 3.264193 ACCTATCATTCACACCAGCTCAA 59.736 43.478 0.00 0.00 0.00 3.02
4876 5524 1.251527 ACCAGCTCAACGACCGAGAT 61.252 55.000 0.00 0.00 31.84 2.75
4886 5534 1.101635 CGACCGAGATGCCTACTCCA 61.102 60.000 0.00 0.00 0.00 3.86
4901 5549 2.084546 ACTCCACCGCATTAAAGCTTC 58.915 47.619 0.00 0.00 0.00 3.86
4914 5562 3.446570 GCTTCGCCAGGCTGCATT 61.447 61.111 10.54 0.00 0.00 3.56
4916 5564 2.020131 CTTCGCCAGGCTGCATTAG 58.980 57.895 10.54 0.00 0.00 1.73
4964 5612 0.320697 ACCCTACACTCTTCCAACGC 59.679 55.000 0.00 0.00 0.00 4.84
4965 5613 0.608640 CCCTACACTCTTCCAACGCT 59.391 55.000 0.00 0.00 0.00 5.07
4967 5615 1.071605 CTACACTCTTCCAACGCTGC 58.928 55.000 0.00 0.00 0.00 5.25
4986 5634 1.804151 GCGGCACACAGAAAACATCTA 59.196 47.619 0.00 0.00 36.32 1.98
5008 5656 2.161609 CGTTGTTATGGGCAAGAAGTCC 59.838 50.000 0.00 0.00 44.53 3.85
5015 5663 3.093278 GCAAGAAGTCCGATGCCG 58.907 61.111 0.00 0.00 32.73 5.69
5017 5665 0.811616 GCAAGAAGTCCGATGCCGAT 60.812 55.000 0.00 0.00 38.22 4.18
5030 5686 1.819632 GCCGATTAGTGGTGGCCAG 60.820 63.158 5.11 0.00 41.70 4.85
5047 5703 4.154296 GCACATGGCTCTGGATCC 57.846 61.111 4.20 4.20 40.25 3.36
5072 5728 2.655685 GCTCCGGATCGAGTTCGC 60.656 66.667 3.57 0.00 39.60 4.70
5076 5732 4.847516 CGGATCGAGTTCGCGCCA 62.848 66.667 0.00 0.00 39.60 5.69
5093 5749 1.651240 CCACCGCTCATGCTCTTTGG 61.651 60.000 0.00 0.00 36.97 3.28
5094 5750 1.377725 ACCGCTCATGCTCTTTGGG 60.378 57.895 0.00 0.00 36.97 4.12
5095 5751 1.377725 CCGCTCATGCTCTTTGGGT 60.378 57.895 0.00 0.00 36.97 4.51
5096 5752 1.372087 CCGCTCATGCTCTTTGGGTC 61.372 60.000 0.00 0.00 36.97 4.46
5097 5753 1.372087 CGCTCATGCTCTTTGGGTCC 61.372 60.000 0.00 0.00 36.97 4.46
5098 5754 1.034292 GCTCATGCTCTTTGGGTCCC 61.034 60.000 0.00 0.00 36.03 4.46
5099 5755 0.622665 CTCATGCTCTTTGGGTCCCT 59.377 55.000 10.00 0.00 0.00 4.20
5100 5756 0.620556 TCATGCTCTTTGGGTCCCTC 59.379 55.000 10.00 0.00 0.00 4.30
5101 5757 0.745845 CATGCTCTTTGGGTCCCTCG 60.746 60.000 10.00 0.00 0.00 4.63
5102 5758 1.201429 ATGCTCTTTGGGTCCCTCGT 61.201 55.000 10.00 0.00 0.00 4.18
5103 5759 1.079057 GCTCTTTGGGTCCCTCGTC 60.079 63.158 10.00 0.00 0.00 4.20
5104 5760 1.597461 CTCTTTGGGTCCCTCGTCC 59.403 63.158 10.00 0.00 0.00 4.79
5105 5761 0.905337 CTCTTTGGGTCCCTCGTCCT 60.905 60.000 10.00 0.00 0.00 3.85
5106 5762 0.473117 TCTTTGGGTCCCTCGTCCTT 60.473 55.000 10.00 0.00 0.00 3.36
5107 5763 0.036294 CTTTGGGTCCCTCGTCCTTC 60.036 60.000 10.00 0.00 0.00 3.46
5108 5764 0.765135 TTTGGGTCCCTCGTCCTTCA 60.765 55.000 10.00 0.00 0.00 3.02
5109 5765 1.477685 TTGGGTCCCTCGTCCTTCAC 61.478 60.000 10.00 0.00 0.00 3.18
5117 5773 2.257371 CGTCCTTCACGGCTTCGA 59.743 61.111 0.00 0.00 45.46 3.71
5118 5774 1.372499 CGTCCTTCACGGCTTCGAA 60.372 57.895 0.00 0.00 45.46 3.71
5119 5775 1.344942 CGTCCTTCACGGCTTCGAAG 61.345 60.000 21.02 21.02 45.46 3.79
5121 5777 4.988065 CTTCACGGCTTCGAAGGA 57.012 55.556 25.77 12.05 35.93 3.36
5122 5778 3.442996 CTTCACGGCTTCGAAGGAT 57.557 52.632 25.77 0.00 35.93 3.24
5123 5779 1.002366 CTTCACGGCTTCGAAGGATG 58.998 55.000 25.77 12.59 35.93 3.51
5124 5780 0.320374 TTCACGGCTTCGAAGGATGT 59.680 50.000 25.77 6.78 37.63 3.06
5125 5781 0.108804 TCACGGCTTCGAAGGATGTC 60.109 55.000 25.77 9.07 37.63 3.06
5126 5782 0.389817 CACGGCTTCGAAGGATGTCA 60.390 55.000 25.77 0.00 37.63 3.58
5127 5783 0.320374 ACGGCTTCGAAGGATGTCAA 59.680 50.000 25.77 0.00 37.63 3.18
5128 5784 1.002366 CGGCTTCGAAGGATGTCAAG 58.998 55.000 25.77 0.00 35.61 3.02
5129 5785 0.729690 GGCTTCGAAGGATGTCAAGC 59.270 55.000 25.77 9.27 39.02 4.01
5130 5786 0.729690 GCTTCGAAGGATGTCAAGCC 59.270 55.000 25.77 1.98 34.59 4.35
5131 5787 1.945819 GCTTCGAAGGATGTCAAGCCA 60.946 52.381 25.77 0.00 34.59 4.75
5132 5788 2.636830 CTTCGAAGGATGTCAAGCCAT 58.363 47.619 17.70 0.00 32.71 4.40
5133 5789 3.797039 CTTCGAAGGATGTCAAGCCATA 58.203 45.455 17.70 0.00 32.71 2.74
5134 5790 3.459232 TCGAAGGATGTCAAGCCATAG 57.541 47.619 0.00 0.00 32.71 2.23
5135 5791 1.869767 CGAAGGATGTCAAGCCATAGC 59.130 52.381 0.00 0.00 32.71 2.97
5136 5792 2.225467 GAAGGATGTCAAGCCATAGCC 58.775 52.381 0.00 0.00 41.25 3.93
5137 5793 0.107456 AGGATGTCAAGCCATAGCCG 59.893 55.000 0.00 0.00 41.25 5.52
5138 5794 0.106708 GGATGTCAAGCCATAGCCGA 59.893 55.000 0.00 0.00 41.25 5.54
5139 5795 1.271054 GGATGTCAAGCCATAGCCGAT 60.271 52.381 0.00 0.00 41.25 4.18
5140 5796 2.072298 GATGTCAAGCCATAGCCGATC 58.928 52.381 0.00 0.00 41.25 3.69
5141 5797 1.123077 TGTCAAGCCATAGCCGATCT 58.877 50.000 0.00 0.00 41.25 2.75
5142 5798 1.069204 TGTCAAGCCATAGCCGATCTC 59.931 52.381 0.00 0.00 41.25 2.75
5143 5799 0.681733 TCAAGCCATAGCCGATCTCC 59.318 55.000 0.00 0.00 41.25 3.71
5144 5800 0.321122 CAAGCCATAGCCGATCTCCC 60.321 60.000 0.00 0.00 41.25 4.30
5145 5801 1.484444 AAGCCATAGCCGATCTCCCC 61.484 60.000 0.00 0.00 41.25 4.81
5146 5802 2.973899 CCATAGCCGATCTCCCCG 59.026 66.667 0.00 0.00 0.00 5.73
5153 5809 3.288290 CGATCTCCCCGGACGAGG 61.288 72.222 15.92 3.59 0.00 4.63
5154 5810 2.195139 GATCTCCCCGGACGAGGA 59.805 66.667 15.92 7.69 0.00 3.71
5161 5817 3.522731 CCGGACGAGGAGCAGGAG 61.523 72.222 0.00 0.00 0.00 3.69
5162 5818 4.200283 CGGACGAGGAGCAGGAGC 62.200 72.222 0.00 0.00 42.56 4.70
5163 5819 3.844090 GGACGAGGAGCAGGAGCC 61.844 72.222 0.00 0.00 43.56 4.70
5164 5820 3.071206 GACGAGGAGCAGGAGCCA 61.071 66.667 0.00 0.00 43.56 4.75
5165 5821 3.363844 GACGAGGAGCAGGAGCCAC 62.364 68.421 0.00 0.00 43.56 5.01
5166 5822 4.154347 CGAGGAGCAGGAGCCACC 62.154 72.222 0.00 0.00 43.56 4.61
5167 5823 3.791586 GAGGAGCAGGAGCCACCC 61.792 72.222 0.00 0.00 43.56 4.61
5168 5824 4.664267 AGGAGCAGGAGCCACCCA 62.664 66.667 0.00 0.00 43.56 4.51
5169 5825 3.415087 GGAGCAGGAGCCACCCAT 61.415 66.667 0.00 0.00 43.56 4.00
5170 5826 2.191641 GAGCAGGAGCCACCCATC 59.808 66.667 0.00 0.00 43.56 3.51
5171 5827 3.412624 GAGCAGGAGCCACCCATCC 62.413 68.421 0.00 0.00 43.56 3.51
5173 5829 2.914289 CAGGAGCCACCCATCCTC 59.086 66.667 0.00 0.00 44.30 3.71
5174 5830 2.765807 AGGAGCCACCCATCCTCG 60.766 66.667 0.00 0.00 42.44 4.63
5175 5831 4.554036 GGAGCCACCCATCCTCGC 62.554 72.222 0.00 0.00 32.51 5.03
5176 5832 4.554036 GAGCCACCCATCCTCGCC 62.554 72.222 0.00 0.00 0.00 5.54
5178 5834 4.554036 GCCACCCATCCTCGCCTC 62.554 72.222 0.00 0.00 0.00 4.70
5179 5835 3.866582 CCACCCATCCTCGCCTCC 61.867 72.222 0.00 0.00 0.00 4.30
5180 5836 4.227134 CACCCATCCTCGCCTCCG 62.227 72.222 0.00 0.00 0.00 4.63
5199 5855 4.124351 GCCCACGACGGACGATGA 62.124 66.667 6.90 0.00 45.77 2.92
5200 5856 2.102357 CCCACGACGGACGATGAG 59.898 66.667 6.90 0.00 45.77 2.90
5201 5857 2.697761 CCCACGACGGACGATGAGT 61.698 63.158 6.90 0.00 45.77 3.41
5202 5858 1.211969 CCACGACGGACGATGAGTT 59.788 57.895 6.90 0.00 45.77 3.01
5203 5859 0.797249 CCACGACGGACGATGAGTTC 60.797 60.000 6.90 0.00 45.77 3.01
5204 5860 0.109919 CACGACGGACGATGAGTTCA 60.110 55.000 6.90 0.00 45.77 3.18
5205 5861 0.809385 ACGACGGACGATGAGTTCAT 59.191 50.000 6.90 0.00 45.77 2.57
5206 5862 1.191944 CGACGGACGATGAGTTCATG 58.808 55.000 0.00 0.00 45.77 3.07
5207 5863 1.467543 CGACGGACGATGAGTTCATGT 60.468 52.381 0.00 0.00 45.77 3.21
5208 5864 1.920574 GACGGACGATGAGTTCATGTG 59.079 52.381 0.00 0.00 36.57 3.21
5209 5865 1.544246 ACGGACGATGAGTTCATGTGA 59.456 47.619 0.00 0.00 36.57 3.58
5210 5866 1.920574 CGGACGATGAGTTCATGTGAC 59.079 52.381 0.00 0.00 36.57 3.67
5211 5867 2.671070 CGGACGATGAGTTCATGTGACA 60.671 50.000 0.00 0.00 36.57 3.58
5212 5868 2.668457 GGACGATGAGTTCATGTGACAC 59.332 50.000 0.00 0.00 36.57 3.67
5213 5869 3.317150 GACGATGAGTTCATGTGACACA 58.683 45.455 11.41 11.41 36.57 3.72
5214 5870 3.928992 GACGATGAGTTCATGTGACACAT 59.071 43.478 15.48 15.48 39.91 3.21
5223 5879 2.957402 ATGTGACACATGAAGGTGGT 57.043 45.000 20.21 0.00 43.08 4.16
5224 5880 1.965935 TGTGACACATGAAGGTGGTG 58.034 50.000 3.56 0.00 43.08 4.17
5225 5881 0.593128 GTGACACATGAAGGTGGTGC 59.407 55.000 0.00 0.00 43.08 5.01
5226 5882 0.473755 TGACACATGAAGGTGGTGCT 59.526 50.000 0.00 0.00 43.08 4.40
5227 5883 0.877071 GACACATGAAGGTGGTGCTG 59.123 55.000 0.00 0.00 43.08 4.41
5228 5884 1.174712 ACACATGAAGGTGGTGCTGC 61.175 55.000 0.00 0.00 43.08 5.25
5229 5885 1.151221 ACATGAAGGTGGTGCTGCA 59.849 52.632 0.00 0.00 0.00 4.41
5230 5886 0.892358 ACATGAAGGTGGTGCTGCAG 60.892 55.000 10.11 10.11 0.00 4.41
5231 5887 1.975407 ATGAAGGTGGTGCTGCAGC 60.975 57.895 31.89 31.89 42.50 5.25
5251 5907 3.681473 TCGCTGATCGAGTGTGGT 58.319 55.556 0.00 0.00 43.16 4.16
5252 5908 1.506718 TCGCTGATCGAGTGTGGTC 59.493 57.895 0.00 0.00 43.16 4.02
5253 5909 1.212751 CGCTGATCGAGTGTGGTCA 59.787 57.895 0.00 0.00 41.67 4.02
5254 5910 0.799917 CGCTGATCGAGTGTGGTCAG 60.800 60.000 7.02 7.02 41.67 3.51
5255 5911 3.041874 CTGATCGAGTGTGGTCAGC 57.958 57.895 0.00 0.00 32.62 4.26
5256 5912 0.459237 CTGATCGAGTGTGGTCAGCC 60.459 60.000 0.00 0.00 32.62 4.85
5257 5913 1.184970 TGATCGAGTGTGGTCAGCCA 61.185 55.000 0.00 0.00 43.73 4.75
5266 5922 3.406442 TGGTCAGCCATCTCCTCTT 57.594 52.632 0.00 0.00 40.46 2.85
5267 5923 1.198713 TGGTCAGCCATCTCCTCTTC 58.801 55.000 0.00 0.00 40.46 2.87
5268 5924 0.103937 GGTCAGCCATCTCCTCTTCG 59.896 60.000 0.00 0.00 34.09 3.79
5269 5925 0.529555 GTCAGCCATCTCCTCTTCGC 60.530 60.000 0.00 0.00 0.00 4.70
5270 5926 0.972471 TCAGCCATCTCCTCTTCGCA 60.972 55.000 0.00 0.00 0.00 5.10
5271 5927 0.107993 CAGCCATCTCCTCTTCGCAA 60.108 55.000 0.00 0.00 0.00 4.85
5272 5928 0.615331 AGCCATCTCCTCTTCGCAAA 59.385 50.000 0.00 0.00 0.00 3.68
5273 5929 1.211457 AGCCATCTCCTCTTCGCAAAT 59.789 47.619 0.00 0.00 0.00 2.32
5274 5930 1.332997 GCCATCTCCTCTTCGCAAATG 59.667 52.381 0.00 0.00 0.00 2.32
5275 5931 2.636830 CCATCTCCTCTTCGCAAATGT 58.363 47.619 0.00 0.00 0.00 2.71
5276 5932 2.353889 CCATCTCCTCTTCGCAAATGTG 59.646 50.000 0.00 0.00 0.00 3.21
5277 5933 3.264947 CATCTCCTCTTCGCAAATGTGA 58.735 45.455 0.00 0.00 0.00 3.58
5278 5934 2.688507 TCTCCTCTTCGCAAATGTGAC 58.311 47.619 0.00 0.00 33.83 3.67
5279 5935 1.391485 CTCCTCTTCGCAAATGTGACG 59.609 52.381 0.00 0.00 33.83 4.35
5280 5936 1.148310 CCTCTTCGCAAATGTGACGT 58.852 50.000 0.00 0.00 33.83 4.34
5281 5937 1.126846 CCTCTTCGCAAATGTGACGTC 59.873 52.381 9.11 9.11 33.83 4.34
5282 5938 2.061773 CTCTTCGCAAATGTGACGTCT 58.938 47.619 17.92 0.00 33.83 4.18
5283 5939 3.242518 CTCTTCGCAAATGTGACGTCTA 58.757 45.455 17.92 6.32 33.83 2.59
5284 5940 3.242518 TCTTCGCAAATGTGACGTCTAG 58.757 45.455 17.92 1.46 33.83 2.43
5285 5941 3.057806 TCTTCGCAAATGTGACGTCTAGA 60.058 43.478 17.92 2.17 33.83 2.43
5286 5942 3.503827 TCGCAAATGTGACGTCTAGAT 57.496 42.857 17.92 4.56 0.00 1.98
5287 5943 3.435566 TCGCAAATGTGACGTCTAGATC 58.564 45.455 17.92 3.09 0.00 2.75
5288 5944 3.119637 TCGCAAATGTGACGTCTAGATCA 60.120 43.478 17.92 8.49 0.00 2.92
5289 5945 3.241553 CGCAAATGTGACGTCTAGATCAG 59.758 47.826 17.92 2.80 0.00 2.90
5290 5946 4.424626 GCAAATGTGACGTCTAGATCAGA 58.575 43.478 17.92 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.699895 AAAACGCGTTTTCTCTTTTTCTTT 57.300 29.167 36.93 16.12 38.27 2.52
38 41 2.342279 CGTGCCTCCTCGGAAACA 59.658 61.111 0.00 0.00 33.16 2.83
146 161 2.970639 CGTGCCTCTCGGAAAGGA 59.029 61.111 0.36 0.00 35.83 3.36
171 186 1.295792 TGGTTGTGCTTTCACGAGAC 58.704 50.000 0.00 0.00 46.01 3.36
194 209 1.837538 CGGTTTTGCTTCCGCGAGAA 61.838 55.000 8.23 8.88 40.28 2.87
355 506 3.219052 ACGGTTTTGCTTTCGTGAAAA 57.781 38.095 0.00 0.00 34.40 2.29
382 533 0.736053 GTCACGGTTTTGCTTCCACA 59.264 50.000 0.00 0.00 0.00 4.17
458 637 8.755941 GTCTTCCTTAGCTTTTCAATCAAAAAC 58.244 33.333 0.00 0.00 33.40 2.43
488 667 5.074134 GGTTTTTGACGTTTTGGTTTTTCG 58.926 37.500 0.00 0.00 0.00 3.46
589 803 1.595466 TTAACCATTCGCCACGTGTT 58.405 45.000 15.65 1.79 0.00 3.32
607 821 3.002862 TCATTGTCACTTAGCGCGTTTTT 59.997 39.130 8.43 0.00 0.00 1.94
609 823 2.139917 TCATTGTCACTTAGCGCGTTT 58.860 42.857 8.43 0.00 0.00 3.60
611 825 1.927174 GATCATTGTCACTTAGCGCGT 59.073 47.619 8.43 0.00 0.00 6.01
617 831 4.081697 TCTCGCAAGGATCATTGTCACTTA 60.082 41.667 20.25 0.83 38.47 2.24
625 839 2.223688 CGAGAGTCTCGCAAGGATCATT 60.224 50.000 28.13 0.00 46.75 2.57
626 840 1.336440 CGAGAGTCTCGCAAGGATCAT 59.664 52.381 28.13 0.00 46.75 2.45
640 854 1.135731 CGAGCGCTTCTTCGAGAGT 59.864 57.895 13.26 0.00 0.00 3.24
644 858 1.068748 AGTTAACGAGCGCTTCTTCGA 60.069 47.619 21.54 0.00 0.00 3.71
672 887 2.158813 GCTGGTATCGAAGGAATGGGAA 60.159 50.000 0.00 0.00 0.00 3.97
676 891 4.261322 CCATTTGCTGGTATCGAAGGAATG 60.261 45.833 0.00 0.00 40.49 2.67
677 892 3.885297 CCATTTGCTGGTATCGAAGGAAT 59.115 43.478 0.00 0.00 40.49 3.01
678 893 3.278574 CCATTTGCTGGTATCGAAGGAA 58.721 45.455 0.00 0.00 40.49 3.36
679 894 2.421388 CCCATTTGCTGGTATCGAAGGA 60.421 50.000 0.00 0.00 44.30 3.36
680 895 1.949525 CCCATTTGCTGGTATCGAAGG 59.050 52.381 0.00 0.00 44.30 3.46
681 896 1.334869 GCCCATTTGCTGGTATCGAAG 59.665 52.381 0.00 0.00 44.30 3.79
682 897 1.388547 GCCCATTTGCTGGTATCGAA 58.611 50.000 0.00 0.00 44.30 3.71
683 898 0.813610 CGCCCATTTGCTGGTATCGA 60.814 55.000 0.00 0.00 44.30 3.59
684 899 1.648720 CGCCCATTTGCTGGTATCG 59.351 57.895 0.00 0.00 44.30 2.92
685 900 1.360192 GCGCCCATTTGCTGGTATC 59.640 57.895 0.00 0.00 44.30 2.24
686 901 1.379710 TGCGCCCATTTGCTGGTAT 60.380 52.632 4.18 0.00 44.30 2.73
687 902 2.034843 TGCGCCCATTTGCTGGTA 59.965 55.556 4.18 0.00 44.30 3.25
688 903 3.683937 GTGCGCCCATTTGCTGGT 61.684 61.111 4.18 0.00 44.30 4.00
689 904 3.682885 TGTGCGCCCATTTGCTGG 61.683 61.111 4.18 0.00 45.51 4.85
690 905 2.431260 GTGTGCGCCCATTTGCTG 60.431 61.111 4.18 0.00 0.00 4.41
691 906 3.683937 GGTGTGCGCCCATTTGCT 61.684 61.111 4.18 0.00 0.00 3.91
701 916 4.742201 CGGAGGAGTGGGTGTGCG 62.742 72.222 0.00 0.00 0.00 5.34
703 918 4.742201 CGCGGAGGAGTGGGTGTG 62.742 72.222 0.00 0.00 0.00 3.82
720 935 2.225791 GAAAAATGGTCCGGCCCAGC 62.226 60.000 11.28 0.00 38.07 4.85
721 936 0.611896 AGAAAAATGGTCCGGCCCAG 60.612 55.000 11.28 0.00 38.07 4.45
722 937 0.897863 CAGAAAAATGGTCCGGCCCA 60.898 55.000 6.71 6.71 39.27 5.36
723 938 0.898326 ACAGAAAAATGGTCCGGCCC 60.898 55.000 11.72 3.08 36.04 5.80
724 939 0.966179 AACAGAAAAATGGTCCGGCC 59.034 50.000 0.00 1.41 37.90 6.13
725 940 2.812358 AAACAGAAAAATGGTCCGGC 57.188 45.000 0.00 0.00 0.00 6.13
746 961 7.647715 CGACTTTCTTGCAGGATTTTAGAAAAA 59.352 33.333 0.00 0.00 35.22 1.94
747 962 7.138736 CGACTTTCTTGCAGGATTTTAGAAAA 58.861 34.615 0.00 0.00 35.22 2.29
748 963 6.668323 CGACTTTCTTGCAGGATTTTAGAAA 58.332 36.000 0.00 3.37 34.64 2.52
749 964 5.334879 GCGACTTTCTTGCAGGATTTTAGAA 60.335 40.000 0.00 0.00 0.00 2.10
750 965 4.154195 GCGACTTTCTTGCAGGATTTTAGA 59.846 41.667 0.00 0.00 0.00 2.10
751 966 4.406943 GCGACTTTCTTGCAGGATTTTAG 58.593 43.478 0.00 0.00 0.00 1.85
752 967 3.120338 CGCGACTTTCTTGCAGGATTTTA 60.120 43.478 0.00 0.00 0.00 1.52
753 968 2.350772 CGCGACTTTCTTGCAGGATTTT 60.351 45.455 0.00 0.00 0.00 1.82
754 969 1.197721 CGCGACTTTCTTGCAGGATTT 59.802 47.619 0.00 0.00 0.00 2.17
755 970 0.798776 CGCGACTTTCTTGCAGGATT 59.201 50.000 0.00 0.00 0.00 3.01
756 971 1.639298 GCGCGACTTTCTTGCAGGAT 61.639 55.000 12.10 0.00 0.00 3.24
757 972 2.317609 GCGCGACTTTCTTGCAGGA 61.318 57.895 12.10 0.00 0.00 3.86
758 973 2.174349 GCGCGACTTTCTTGCAGG 59.826 61.111 12.10 0.00 0.00 4.85
759 974 2.202096 CGCGCGACTTTCTTGCAG 60.202 61.111 28.94 0.00 0.00 4.41
760 975 4.368808 GCGCGCGACTTTCTTGCA 62.369 61.111 37.18 0.00 0.00 4.08
777 992 0.729478 AACAGACGCGACTCACATCG 60.729 55.000 15.93 0.76 45.09 3.84
778 993 0.710567 CAACAGACGCGACTCACATC 59.289 55.000 15.93 0.00 0.00 3.06
779 994 0.313987 TCAACAGACGCGACTCACAT 59.686 50.000 15.93 0.00 0.00 3.21
780 995 0.317854 CTCAACAGACGCGACTCACA 60.318 55.000 15.93 0.00 0.00 3.58
781 996 0.040336 TCTCAACAGACGCGACTCAC 60.040 55.000 15.93 0.00 0.00 3.51
782 997 0.881796 ATCTCAACAGACGCGACTCA 59.118 50.000 15.93 0.00 0.00 3.41
783 998 2.710760 CTATCTCAACAGACGCGACTC 58.289 52.381 15.93 0.00 0.00 3.36
784 999 1.202200 GCTATCTCAACAGACGCGACT 60.202 52.381 15.93 10.02 0.00 4.18
785 1000 1.192793 GCTATCTCAACAGACGCGAC 58.807 55.000 15.93 6.86 0.00 5.19
786 1001 1.095600 AGCTATCTCAACAGACGCGA 58.904 50.000 15.93 0.00 34.87 5.87
787 1002 1.195347 CAGCTATCTCAACAGACGCG 58.805 55.000 3.53 3.53 34.87 6.01
788 1003 1.565305 CCAGCTATCTCAACAGACGC 58.435 55.000 0.00 0.00 0.00 5.19
789 1004 1.804372 GCCCAGCTATCTCAACAGACG 60.804 57.143 0.00 0.00 0.00 4.18
790 1005 1.474143 GGCCCAGCTATCTCAACAGAC 60.474 57.143 0.00 0.00 0.00 3.51
791 1006 0.833287 GGCCCAGCTATCTCAACAGA 59.167 55.000 0.00 0.00 0.00 3.41
792 1007 0.531532 CGGCCCAGCTATCTCAACAG 60.532 60.000 0.00 0.00 0.00 3.16
793 1008 1.522092 CGGCCCAGCTATCTCAACA 59.478 57.895 0.00 0.00 0.00 3.33
794 1009 1.227674 CCGGCCCAGCTATCTCAAC 60.228 63.158 0.00 0.00 0.00 3.18
795 1010 1.686325 GACCGGCCCAGCTATCTCAA 61.686 60.000 0.00 0.00 0.00 3.02
796 1011 2.041922 ACCGGCCCAGCTATCTCA 60.042 61.111 0.00 0.00 0.00 3.27
797 1012 2.737830 GACCGGCCCAGCTATCTC 59.262 66.667 0.00 0.00 0.00 2.75
798 1013 2.844839 GGACCGGCCCAGCTATCT 60.845 66.667 0.00 0.00 0.00 1.98
799 1014 4.301027 CGGACCGGCCCAGCTATC 62.301 72.222 7.85 0.00 0.00 2.08
818 1033 4.379243 ACTTCGCGCAGACCCCTG 62.379 66.667 13.98 0.00 43.22 4.45
819 1034 4.070552 GACTTCGCGCAGACCCCT 62.071 66.667 13.98 0.00 0.00 4.79
821 1036 4.415332 TCGACTTCGCGCAGACCC 62.415 66.667 13.98 0.20 39.60 4.46
822 1037 2.876645 CTCGACTTCGCGCAGACC 60.877 66.667 13.98 2.81 39.60 3.85
823 1038 1.865622 CTCTCGACTTCGCGCAGAC 60.866 63.158 13.98 5.31 39.60 3.51
824 1039 1.853114 AACTCTCGACTTCGCGCAGA 61.853 55.000 13.98 2.49 39.60 4.26
825 1040 1.399504 GAACTCTCGACTTCGCGCAG 61.400 60.000 8.75 3.63 39.60 5.18
826 1041 1.442184 GAACTCTCGACTTCGCGCA 60.442 57.895 8.75 0.00 39.60 6.09
827 1042 2.153322 GGAACTCTCGACTTCGCGC 61.153 63.158 0.00 0.00 39.60 6.86
828 1043 1.514443 GGGAACTCTCGACTTCGCG 60.514 63.158 0.00 0.00 39.60 5.87
829 1044 0.456995 CAGGGAACTCTCGACTTCGC 60.457 60.000 0.00 0.00 40.21 4.70
830 1045 0.882474 ACAGGGAACTCTCGACTTCG 59.118 55.000 0.00 0.00 40.21 3.79
831 1046 3.388345 AAACAGGGAACTCTCGACTTC 57.612 47.619 0.00 0.00 40.21 3.01
832 1047 3.467803 CAAAACAGGGAACTCTCGACTT 58.532 45.455 0.00 0.00 40.21 3.01
833 1048 2.224305 CCAAAACAGGGAACTCTCGACT 60.224 50.000 0.00 0.00 40.21 4.18
834 1049 2.143925 CCAAAACAGGGAACTCTCGAC 58.856 52.381 0.00 0.00 40.21 4.20
835 1050 1.766496 ACCAAAACAGGGAACTCTCGA 59.234 47.619 0.00 0.00 40.21 4.04
836 1051 2.256117 ACCAAAACAGGGAACTCTCG 57.744 50.000 0.00 0.00 40.21 4.04
837 1052 4.023107 GCTTAACCAAAACAGGGAACTCTC 60.023 45.833 0.00 0.00 40.21 3.20
838 1053 3.889538 GCTTAACCAAAACAGGGAACTCT 59.110 43.478 0.00 0.00 40.21 3.24
839 1054 3.889538 AGCTTAACCAAAACAGGGAACTC 59.110 43.478 0.00 0.00 40.21 3.01
840 1055 3.910989 AGCTTAACCAAAACAGGGAACT 58.089 40.909 0.00 0.00 46.44 3.01
841 1056 5.777850 TTAGCTTAACCAAAACAGGGAAC 57.222 39.130 0.00 0.00 0.00 3.62
842 1057 6.381707 AGTTTTAGCTTAACCAAAACAGGGAA 59.618 34.615 19.01 0.00 42.09 3.97
843 1058 5.894964 AGTTTTAGCTTAACCAAAACAGGGA 59.105 36.000 19.01 0.00 42.09 4.20
844 1059 6.156748 AGTTTTAGCTTAACCAAAACAGGG 57.843 37.500 19.01 0.00 42.09 4.45
845 1060 9.589111 TTTTAGTTTTAGCTTAACCAAAACAGG 57.411 29.630 19.01 0.00 42.09 4.00
848 1063 9.858247 GCATTTTAGTTTTAGCTTAACCAAAAC 57.142 29.630 14.88 13.59 40.70 2.43
849 1064 9.047371 GGCATTTTAGTTTTAGCTTAACCAAAA 57.953 29.630 14.90 14.90 33.14 2.44
850 1065 7.658167 GGGCATTTTAGTTTTAGCTTAACCAAA 59.342 33.333 0.00 0.00 0.00 3.28
851 1066 7.156000 GGGCATTTTAGTTTTAGCTTAACCAA 58.844 34.615 0.00 0.00 0.00 3.67
852 1067 6.267928 TGGGCATTTTAGTTTTAGCTTAACCA 59.732 34.615 0.00 0.00 0.00 3.67
853 1068 6.693466 TGGGCATTTTAGTTTTAGCTTAACC 58.307 36.000 0.00 0.00 0.00 2.85
854 1069 7.817478 ACATGGGCATTTTAGTTTTAGCTTAAC 59.183 33.333 0.00 0.00 0.00 2.01
855 1070 7.902087 ACATGGGCATTTTAGTTTTAGCTTAA 58.098 30.769 0.00 0.00 0.00 1.85
856 1071 7.475137 ACATGGGCATTTTAGTTTTAGCTTA 57.525 32.000 0.00 0.00 0.00 3.09
857 1072 6.358974 ACATGGGCATTTTAGTTTTAGCTT 57.641 33.333 0.00 0.00 0.00 3.74
885 1100 4.986708 TGGGCCTTTGGAACGGGC 62.987 66.667 4.53 0.18 44.59 6.13
894 1109 4.035102 GGGAGCGAGTGGGCCTTT 62.035 66.667 4.53 0.00 0.00 3.11
902 1131 2.963371 GAACGACTGGGAGCGAGT 59.037 61.111 0.00 0.00 0.00 4.18
933 1162 3.050275 GTTCTGCGGGGACAGTGC 61.050 66.667 0.00 0.00 38.84 4.40
965 1194 3.822192 CGTCCAGTCGATGCGGGA 61.822 66.667 0.00 0.00 0.00 5.14
1101 1410 0.749091 TCGTAAGAGGATCGGCCGAA 60.749 55.000 34.66 16.30 45.01 4.30
1179 1488 2.350388 CGTCTGCAACACAAATACCACC 60.350 50.000 0.00 0.00 0.00 4.61
1256 1565 3.450096 TCAGCACAAGTGATAGCAGAGAT 59.550 43.478 4.04 0.00 0.00 2.75
1392 1702 4.515191 GCTGTTCAACCAATTACTGTCAGA 59.485 41.667 6.91 0.00 0.00 3.27
1451 1761 1.464608 CACACGCCACTAAATCCACAG 59.535 52.381 0.00 0.00 0.00 3.66
1579 1889 3.968096 CAGTAATTGCATATCCAAACGCG 59.032 43.478 3.53 3.53 0.00 6.01
1686 1996 4.022935 CAGCCAAGTTAAAGCAGTTGATCA 60.023 41.667 0.00 0.00 29.64 2.92
1690 2000 2.863704 GCCAGCCAAGTTAAAGCAGTTG 60.864 50.000 0.00 0.00 0.00 3.16
1731 2041 7.390440 CAGTTCATGGATAGTACAAGAAAACCA 59.610 37.037 0.00 0.00 28.85 3.67
1809 2119 5.506317 GGCAGACACAATAGCATGGAATTAC 60.506 44.000 0.00 0.00 0.00 1.89
1823 2133 1.152984 CACCACAGGGCAGACACAA 60.153 57.895 0.00 0.00 37.90 3.33
1846 2156 1.394917 CTCAGCTACACATTTCGCCAC 59.605 52.381 0.00 0.00 0.00 5.01
1879 2189 6.481644 GGAATGGCAAAAGTACATGTCAAAAA 59.518 34.615 0.00 0.00 34.41 1.94
2160 2470 7.818997 ACTGATGCACATGATGAATAGATTT 57.181 32.000 0.00 0.00 0.00 2.17
2164 2474 6.373186 ACAACTGATGCACATGATGAATAG 57.627 37.500 0.00 0.00 0.00 1.73
2382 2692 7.609760 TTTTCGTGCACTGATAGAAATATGT 57.390 32.000 16.19 0.00 31.94 2.29
2449 2759 6.124340 TCACACGATCTACCTAAGGTGAATA 58.876 40.000 0.00 0.00 36.19 1.75
2499 2809 3.443099 TCACTGCTCAACCATATCTCG 57.557 47.619 0.00 0.00 0.00 4.04
2593 2903 5.660417 AGATCAGAGAGGCAAAGTAGAATGA 59.340 40.000 0.00 0.00 0.00 2.57
2736 3046 7.821359 GCTATCTCATTCAAATGCTCCAGTATA 59.179 37.037 0.00 0.00 36.36 1.47
2795 3105 1.619654 TTGCACAGGAACATGAAGGG 58.380 50.000 0.00 0.00 0.00 3.95
2916 3231 4.952460 ACACTAAAACGTGTGTACATCCT 58.048 39.130 7.55 0.00 45.74 3.24
2983 3298 7.803189 CCGTTCACATATATAAGATGTTTTGGC 59.197 37.037 1.78 0.00 35.31 4.52
3000 3315 4.342359 ACTACTACTTCCTCCGTTCACAT 58.658 43.478 0.00 0.00 0.00 3.21
3044 3359 7.226523 GGGCAAACACAGAAATAGTCAAAAATT 59.773 33.333 0.00 0.00 0.00 1.82
3069 3384 2.289820 CACGATTCATTGCCTGAGATGG 59.710 50.000 0.00 0.00 34.68 3.51
3124 3439 2.094442 GGGACAAGCTCACAGAGAGTAC 60.094 54.545 0.00 0.00 46.47 2.73
3204 3519 2.166664 ACGAGACTGAATAGCTGAACCC 59.833 50.000 0.00 0.00 0.00 4.11
3381 3696 1.090052 GGCAGAACACGATACCTGGC 61.090 60.000 0.00 0.00 43.21 4.85
3439 4017 3.637998 AAACATTGCAGCTGAGTTGAG 57.362 42.857 20.43 3.79 0.00 3.02
3704 4282 5.464168 ACAGAAGTTCATACAAGCAAATGC 58.536 37.500 5.50 0.00 42.49 3.56
3818 4396 1.546476 ACAGACCATCTTCCGACAGAC 59.454 52.381 0.00 0.00 0.00 3.51
3884 4462 6.038356 CACTTCAGCAGAATTTTGTTCAAGT 58.962 36.000 0.00 0.00 32.31 3.16
3935 4513 0.973632 TAGAACAAGCGGCTTCCTCA 59.026 50.000 13.24 1.34 0.00 3.86
4021 4599 2.662866 CATCAGATGGCCCTTCACATT 58.337 47.619 0.00 0.00 0.00 2.71
4031 4609 1.026182 TTGTCGGTGCATCAGATGGC 61.026 55.000 12.54 5.35 0.00 4.40
4061 4639 4.279885 AGGTGTTTCCTGACGAGTAGCG 62.280 54.545 0.00 0.00 46.19 4.26
4132 4710 8.049721 CCCCTCTAGATTTTTCTGTATCACTTT 58.950 37.037 0.00 0.00 0.00 2.66
4248 4826 2.322355 AGCAGCACAAGTATGGCTAG 57.678 50.000 0.00 0.00 33.51 3.42
4250 4828 2.359900 GTAAGCAGCACAAGTATGGCT 58.640 47.619 0.00 0.00 34.63 4.75
4365 4944 6.194796 TCTATTTCAGCAACATAACTTGGC 57.805 37.500 0.00 0.00 0.00 4.52
4419 4998 9.442047 GAGATAAAAGAACTCCATTTCTCTTCA 57.558 33.333 0.00 0.00 34.60 3.02
4514 5096 5.412594 CGGTCCATTTCTCTTCAGATTTCAA 59.587 40.000 0.00 0.00 0.00 2.69
4561 5143 4.984161 CGAAGTGTCCATTTTGCAAAGATT 59.016 37.500 12.41 0.00 0.00 2.40
4563 5145 3.629855 TCGAAGTGTCCATTTTGCAAAGA 59.370 39.130 12.41 3.69 0.00 2.52
4605 5187 1.542328 CGGACAATTCAGGTGACCACA 60.542 52.381 3.63 0.00 31.27 4.17
4607 5189 0.036164 CCGGACAATTCAGGTGACCA 59.964 55.000 3.63 0.00 32.65 4.02
4674 5283 4.176752 GGTGGACCCGAGGGCATC 62.177 72.222 8.33 0.00 39.32 3.91
4742 5390 2.029623 TCCGCTCTAACTGGTATGGAC 58.970 52.381 0.00 0.00 0.00 4.02
4743 5391 2.029623 GTCCGCTCTAACTGGTATGGA 58.970 52.381 0.00 0.00 0.00 3.41
4744 5392 1.754803 TGTCCGCTCTAACTGGTATGG 59.245 52.381 0.00 0.00 0.00 2.74
4745 5393 3.643763 GATGTCCGCTCTAACTGGTATG 58.356 50.000 0.00 0.00 0.00 2.39
4746 5394 2.293677 CGATGTCCGCTCTAACTGGTAT 59.706 50.000 0.00 0.00 0.00 2.73
4747 5395 1.674441 CGATGTCCGCTCTAACTGGTA 59.326 52.381 0.00 0.00 0.00 3.25
4748 5396 0.456221 CGATGTCCGCTCTAACTGGT 59.544 55.000 0.00 0.00 0.00 4.00
4749 5397 3.258225 CGATGTCCGCTCTAACTGG 57.742 57.895 0.00 0.00 0.00 4.00
4759 5407 1.255342 CTTGTATGAACGCGATGTCCG 59.745 52.381 15.93 0.00 42.21 4.79
4760 5408 2.268298 ACTTGTATGAACGCGATGTCC 58.732 47.619 15.93 0.00 0.00 4.02
4761 5409 3.991605 AACTTGTATGAACGCGATGTC 57.008 42.857 15.93 7.76 0.00 3.06
4762 5410 4.740268 TCTAACTTGTATGAACGCGATGT 58.260 39.130 15.93 0.00 0.00 3.06
4763 5411 4.317418 GCTCTAACTTGTATGAACGCGATG 60.317 45.833 15.93 0.00 0.00 3.84
4764 5412 3.797256 GCTCTAACTTGTATGAACGCGAT 59.203 43.478 15.93 0.00 0.00 4.58
4765 5413 3.176708 GCTCTAACTTGTATGAACGCGA 58.823 45.455 15.93 0.00 0.00 5.87
4766 5414 2.035674 CGCTCTAACTTGTATGAACGCG 60.036 50.000 3.53 3.53 0.00 6.01
4767 5415 2.281762 CCGCTCTAACTTGTATGAACGC 59.718 50.000 0.00 0.00 0.00 4.84
4768 5416 3.546670 GTCCGCTCTAACTTGTATGAACG 59.453 47.826 0.00 0.00 0.00 3.95
4769 5417 3.546670 CGTCCGCTCTAACTTGTATGAAC 59.453 47.826 0.00 0.00 0.00 3.18
4777 5425 1.080025 GCCACGTCCGCTCTAACTT 60.080 57.895 0.00 0.00 0.00 2.66
4866 5514 1.102222 GGAGTAGGCATCTCGGTCGT 61.102 60.000 0.00 0.00 33.26 4.34
4876 5524 0.906066 TTAATGCGGTGGAGTAGGCA 59.094 50.000 0.00 0.00 40.06 4.75
4914 5562 6.486993 TCTGAGCTCAGTCGATTTAATAGCTA 59.513 38.462 36.32 13.94 44.12 3.32
4916 5564 5.401079 GTCTGAGCTCAGTCGATTTAATAGC 59.599 44.000 36.32 12.43 44.12 2.97
4964 5612 0.311790 ATGTTTTCTGTGTGCCGCAG 59.688 50.000 8.85 8.85 42.60 5.18
4965 5613 0.310543 GATGTTTTCTGTGTGCCGCA 59.689 50.000 0.00 0.00 0.00 5.69
4967 5615 2.159841 CGTAGATGTTTTCTGTGTGCCG 60.160 50.000 0.00 0.00 35.79 5.69
4986 5634 2.812011 GACTTCTTGCCCATAACAACGT 59.188 45.455 0.00 0.00 0.00 3.99
5008 5656 1.498865 GCCACCACTAATCGGCATCG 61.499 60.000 0.00 0.00 44.25 3.84
5015 5663 0.322456 TGTGCTGGCCACCACTAATC 60.322 55.000 27.34 5.79 44.01 1.75
5017 5665 0.608856 CATGTGCTGGCCACCACTAA 60.609 55.000 27.34 12.32 44.01 2.24
5030 5686 1.890979 CGGATCCAGAGCCATGTGC 60.891 63.158 13.41 0.00 36.48 4.57
5101 5757 2.446341 CTTCGAAGCCGTGAAGGAC 58.554 57.895 13.09 0.00 45.00 3.85
5102 5758 4.988065 CTTCGAAGCCGTGAAGGA 57.012 55.556 13.09 0.00 45.00 3.36
5104 5760 1.002366 CATCCTTCGAAGCCGTGAAG 58.998 55.000 19.99 4.95 40.97 3.02
5105 5761 0.320374 ACATCCTTCGAAGCCGTGAA 59.680 50.000 19.99 0.83 37.05 3.18
5106 5762 0.108804 GACATCCTTCGAAGCCGTGA 60.109 55.000 19.99 11.64 37.05 4.35
5107 5763 0.389817 TGACATCCTTCGAAGCCGTG 60.390 55.000 19.99 17.74 37.05 4.94
5108 5764 0.320374 TTGACATCCTTCGAAGCCGT 59.680 50.000 19.99 14.81 37.05 5.68
5109 5765 1.002366 CTTGACATCCTTCGAAGCCG 58.998 55.000 19.99 11.76 37.07 5.52
5110 5766 0.729690 GCTTGACATCCTTCGAAGCC 59.270 55.000 19.99 6.27 34.26 4.35
5111 5767 0.729690 GGCTTGACATCCTTCGAAGC 59.270 55.000 19.99 5.50 38.64 3.86
5112 5768 2.099141 TGGCTTGACATCCTTCGAAG 57.901 50.000 18.51 18.51 0.00 3.79
5113 5769 2.787473 ATGGCTTGACATCCTTCGAA 57.213 45.000 0.00 0.00 0.00 3.71
5114 5770 2.483714 GCTATGGCTTGACATCCTTCGA 60.484 50.000 0.00 0.00 35.22 3.71
5115 5771 1.869767 GCTATGGCTTGACATCCTTCG 59.130 52.381 0.00 0.00 35.22 3.79
5116 5772 2.225467 GGCTATGGCTTGACATCCTTC 58.775 52.381 0.00 0.00 38.73 3.46
5117 5773 1.475751 CGGCTATGGCTTGACATCCTT 60.476 52.381 0.00 0.00 38.73 3.36
5118 5774 0.107456 CGGCTATGGCTTGACATCCT 59.893 55.000 0.00 0.00 38.73 3.24
5119 5775 0.106708 TCGGCTATGGCTTGACATCC 59.893 55.000 0.00 0.00 38.73 3.51
5120 5776 2.072298 GATCGGCTATGGCTTGACATC 58.928 52.381 0.00 0.00 38.73 3.06
5121 5777 1.696336 AGATCGGCTATGGCTTGACAT 59.304 47.619 0.00 0.00 38.73 3.06
5122 5778 1.069204 GAGATCGGCTATGGCTTGACA 59.931 52.381 0.00 0.00 38.73 3.58
5123 5779 1.606737 GGAGATCGGCTATGGCTTGAC 60.607 57.143 0.00 0.00 38.73 3.18
5124 5780 0.681733 GGAGATCGGCTATGGCTTGA 59.318 55.000 0.00 0.00 38.73 3.02
5125 5781 0.321122 GGGAGATCGGCTATGGCTTG 60.321 60.000 0.00 0.00 38.73 4.01
5126 5782 1.484444 GGGGAGATCGGCTATGGCTT 61.484 60.000 0.00 0.00 38.73 4.35
5127 5783 1.915769 GGGGAGATCGGCTATGGCT 60.916 63.158 0.00 0.00 38.73 4.75
5128 5784 2.665603 GGGGAGATCGGCTATGGC 59.334 66.667 0.00 0.00 37.82 4.40
5129 5785 2.650116 CCGGGGAGATCGGCTATGG 61.650 68.421 0.00 0.00 41.07 2.74
5130 5786 1.606601 TCCGGGGAGATCGGCTATG 60.607 63.158 0.00 0.00 46.43 2.23
5131 5787 1.606889 GTCCGGGGAGATCGGCTAT 60.607 63.158 0.00 0.00 46.43 2.97
5132 5788 2.203451 GTCCGGGGAGATCGGCTA 60.203 66.667 0.00 0.00 46.43 3.93
5136 5792 3.288290 CCTCGTCCGGGGAGATCG 61.288 72.222 20.73 8.75 38.23 3.69
5137 5793 2.195139 TCCTCGTCCGGGGAGATC 59.805 66.667 20.73 0.00 40.42 2.75
5144 5800 3.522731 CTCCTGCTCCTCGTCCGG 61.523 72.222 0.00 0.00 0.00 5.14
5145 5801 4.200283 GCTCCTGCTCCTCGTCCG 62.200 72.222 0.00 0.00 36.03 4.79
5146 5802 3.844090 GGCTCCTGCTCCTCGTCC 61.844 72.222 0.00 0.00 39.59 4.79
5147 5803 3.071206 TGGCTCCTGCTCCTCGTC 61.071 66.667 0.00 0.00 39.59 4.20
5148 5804 3.386237 GTGGCTCCTGCTCCTCGT 61.386 66.667 0.00 0.00 39.59 4.18
5149 5805 4.154347 GGTGGCTCCTGCTCCTCG 62.154 72.222 0.00 0.00 39.59 4.63
5150 5806 3.791586 GGGTGGCTCCTGCTCCTC 61.792 72.222 5.46 0.00 39.59 3.71
5151 5807 3.958629 ATGGGTGGCTCCTGCTCCT 62.959 63.158 5.46 0.00 39.59 3.69
5152 5808 3.412624 GATGGGTGGCTCCTGCTCC 62.413 68.421 5.46 0.00 39.59 4.70
5153 5809 2.191641 GATGGGTGGCTCCTGCTC 59.808 66.667 5.46 0.00 39.59 4.26
5154 5810 3.415087 GGATGGGTGGCTCCTGCT 61.415 66.667 5.46 0.00 39.59 4.24
5155 5811 3.412624 GAGGATGGGTGGCTCCTGC 62.413 68.421 5.46 0.00 42.02 4.85
5156 5812 2.914289 GAGGATGGGTGGCTCCTG 59.086 66.667 5.46 0.00 42.02 3.86
5157 5813 2.765807 CGAGGATGGGTGGCTCCT 60.766 66.667 5.46 0.00 44.67 3.69
5158 5814 4.554036 GCGAGGATGGGTGGCTCC 62.554 72.222 0.00 0.00 0.00 4.70
5159 5815 4.554036 GGCGAGGATGGGTGGCTC 62.554 72.222 0.00 0.00 0.00 4.70
5161 5817 4.554036 GAGGCGAGGATGGGTGGC 62.554 72.222 0.00 0.00 0.00 5.01
5162 5818 3.866582 GGAGGCGAGGATGGGTGG 61.867 72.222 0.00 0.00 0.00 4.61
5163 5819 4.227134 CGGAGGCGAGGATGGGTG 62.227 72.222 0.00 0.00 0.00 4.61
5182 5838 4.124351 TCATCGTCCGTCGTGGGC 62.124 66.667 0.00 0.00 39.78 5.36
5183 5839 2.102357 CTCATCGTCCGTCGTGGG 59.898 66.667 0.00 0.00 40.80 4.61
5184 5840 0.797249 GAACTCATCGTCCGTCGTGG 60.797 60.000 0.00 0.00 40.80 4.94
5185 5841 0.109919 TGAACTCATCGTCCGTCGTG 60.110 55.000 0.00 0.00 40.80 4.35
5186 5842 0.809385 ATGAACTCATCGTCCGTCGT 59.191 50.000 0.00 0.00 40.80 4.34
5187 5843 1.191944 CATGAACTCATCGTCCGTCG 58.808 55.000 0.00 0.00 41.41 5.12
5188 5844 1.920574 CACATGAACTCATCGTCCGTC 59.079 52.381 0.00 0.00 33.61 4.79
5189 5845 1.544246 TCACATGAACTCATCGTCCGT 59.456 47.619 0.00 0.00 33.61 4.69
5190 5846 1.920574 GTCACATGAACTCATCGTCCG 59.079 52.381 0.00 0.00 33.61 4.79
5191 5847 2.668457 GTGTCACATGAACTCATCGTCC 59.332 50.000 0.00 0.00 33.61 4.79
5192 5848 3.317150 TGTGTCACATGAACTCATCGTC 58.683 45.455 0.18 0.00 33.61 4.20
5193 5849 3.385193 TGTGTCACATGAACTCATCGT 57.615 42.857 0.18 0.00 33.61 3.73
5204 5860 2.507484 CACCACCTTCATGTGTCACAT 58.493 47.619 12.87 12.87 39.91 3.21
5205 5861 1.965935 CACCACCTTCATGTGTCACA 58.034 50.000 8.40 8.40 34.35 3.58
5206 5862 0.593128 GCACCACCTTCATGTGTCAC 59.407 55.000 0.00 0.00 34.35 3.67
5207 5863 0.473755 AGCACCACCTTCATGTGTCA 59.526 50.000 0.00 0.00 34.35 3.58
5208 5864 0.877071 CAGCACCACCTTCATGTGTC 59.123 55.000 0.00 0.00 34.35 3.67
5209 5865 1.174712 GCAGCACCACCTTCATGTGT 61.175 55.000 0.00 0.00 34.35 3.72
5210 5866 1.174078 TGCAGCACCACCTTCATGTG 61.174 55.000 0.00 0.00 35.98 3.21
5211 5867 0.892358 CTGCAGCACCACCTTCATGT 60.892 55.000 0.00 0.00 0.00 3.21
5212 5868 1.880894 CTGCAGCACCACCTTCATG 59.119 57.895 0.00 0.00 0.00 3.07
5213 5869 1.975407 GCTGCAGCACCACCTTCAT 60.975 57.895 33.36 0.00 41.59 2.57
5214 5870 2.595463 GCTGCAGCACCACCTTCA 60.595 61.111 33.36 0.00 41.59 3.02
5230 5886 1.153939 ACACTCGATCAGCGACTGC 60.154 57.895 0.00 0.00 45.59 4.40
5231 5887 0.799917 CCACACTCGATCAGCGACTG 60.800 60.000 0.00 0.00 45.59 3.51
5232 5888 1.244697 ACCACACTCGATCAGCGACT 61.245 55.000 0.00 0.00 45.59 4.18
5233 5889 0.798771 GACCACACTCGATCAGCGAC 60.799 60.000 0.00 0.00 45.59 5.19
5235 5891 0.799917 CTGACCACACTCGATCAGCG 60.800 60.000 0.00 0.00 42.69 5.18
5236 5892 3.041874 CTGACCACACTCGATCAGC 57.958 57.895 0.00 0.00 32.76 4.26
5237 5893 0.459237 GGCTGACCACACTCGATCAG 60.459 60.000 7.02 7.02 41.29 2.90
5238 5894 1.184970 TGGCTGACCACACTCGATCA 61.185 55.000 0.00 0.00 42.67 2.92
5239 5895 1.591703 TGGCTGACCACACTCGATC 59.408 57.895 0.00 0.00 42.67 3.69
5240 5896 3.791640 TGGCTGACCACACTCGAT 58.208 55.556 0.00 0.00 42.67 3.59
5249 5905 0.103937 CGAAGAGGAGATGGCTGACC 59.896 60.000 0.00 0.00 0.00 4.02
5250 5906 0.529555 GCGAAGAGGAGATGGCTGAC 60.530 60.000 0.00 0.00 0.00 3.51
5251 5907 0.972471 TGCGAAGAGGAGATGGCTGA 60.972 55.000 0.00 0.00 0.00 4.26
5252 5908 0.107993 TTGCGAAGAGGAGATGGCTG 60.108 55.000 0.00 0.00 0.00 4.85
5253 5909 0.615331 TTTGCGAAGAGGAGATGGCT 59.385 50.000 0.00 0.00 0.00 4.75
5254 5910 1.332997 CATTTGCGAAGAGGAGATGGC 59.667 52.381 0.00 0.00 30.75 4.40
5255 5911 2.353889 CACATTTGCGAAGAGGAGATGG 59.646 50.000 0.00 0.00 37.15 3.51
5256 5912 3.063180 GTCACATTTGCGAAGAGGAGATG 59.937 47.826 0.00 0.00 38.47 2.90
5257 5913 3.265791 GTCACATTTGCGAAGAGGAGAT 58.734 45.455 0.00 0.00 0.00 2.75
5258 5914 2.688507 GTCACATTTGCGAAGAGGAGA 58.311 47.619 0.00 0.00 0.00 3.71
5259 5915 1.391485 CGTCACATTTGCGAAGAGGAG 59.609 52.381 0.00 0.00 0.00 3.69
5260 5916 1.270094 ACGTCACATTTGCGAAGAGGA 60.270 47.619 0.00 0.00 0.00 3.71
5261 5917 1.126846 GACGTCACATTTGCGAAGAGG 59.873 52.381 11.55 0.00 0.00 3.69
5262 5918 2.061773 AGACGTCACATTTGCGAAGAG 58.938 47.619 19.50 0.00 0.00 2.85
5263 5919 2.148916 AGACGTCACATTTGCGAAGA 57.851 45.000 19.50 0.00 0.00 2.87
5264 5920 3.242518 TCTAGACGTCACATTTGCGAAG 58.757 45.455 19.50 0.00 0.00 3.79
5265 5921 3.291809 TCTAGACGTCACATTTGCGAA 57.708 42.857 19.50 0.00 0.00 4.70
5266 5922 3.119637 TGATCTAGACGTCACATTTGCGA 60.120 43.478 19.50 2.30 0.00 5.10
5267 5923 3.179048 TGATCTAGACGTCACATTTGCG 58.821 45.455 19.50 0.00 0.00 4.85
5268 5924 4.266502 GTCTGATCTAGACGTCACATTTGC 59.733 45.833 19.50 1.28 45.77 3.68
5269 5925 5.940603 GTCTGATCTAGACGTCACATTTG 57.059 43.478 19.50 2.35 45.77 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.