Multiple sequence alignment - TraesCS2A01G304400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G304400 chr2A 100.000 4676 0 0 1 4676 522847370 522842695 0.000000e+00 8636.0
1 TraesCS2A01G304400 chr2A 89.189 148 12 4 2664 2808 3109147 3109293 1.030000e-41 182.0
2 TraesCS2A01G304400 chr2A 79.921 254 35 12 4315 4556 769191319 769191070 6.220000e-39 172.0
3 TraesCS2A01G304400 chr2D 88.504 3410 241 65 1318 4676 386587309 386584000 0.000000e+00 3986.0
4 TraesCS2A01G304400 chr2D 88.430 968 79 15 1108 2069 386588436 386587496 0.000000e+00 1136.0
5 TraesCS2A01G304400 chr2D 91.325 634 52 3 4 637 386589700 386589070 0.000000e+00 863.0
6 TraesCS2A01G304400 chr2D 88.000 350 38 3 2467 2814 386586343 386585996 1.210000e-110 411.0
7 TraesCS2A01G304400 chr2D 83.278 299 39 8 2298 2594 386586156 386585867 9.980000e-67 265.0
8 TraesCS2A01G304400 chr2D 88.024 167 18 2 2132 2297 386587474 386587309 3.690000e-46 196.0
9 TraesCS2A01G304400 chr2D 90.345 145 3 4 824 967 386588948 386588814 3.720000e-41 180.0
10 TraesCS2A01G304400 chr2D 87.342 158 15 4 2664 2818 4463002 4462847 4.810000e-40 176.0
11 TraesCS2A01G304400 chr2D 96.296 81 3 0 758 838 386589056 386588976 2.940000e-27 134.0
12 TraesCS2A01G304400 chr2B 87.904 2968 255 44 1124 4058 457686648 457683752 0.000000e+00 3397.0
13 TraesCS2A01G304400 chr2B 90.723 636 53 6 4 637 457693623 457692992 0.000000e+00 843.0
14 TraesCS2A01G304400 chr2B 89.865 592 33 10 4104 4676 457683754 457683171 0.000000e+00 736.0
15 TraesCS2A01G304400 chr2B 89.080 348 7 10 754 1077 457687254 457686914 2.030000e-108 403.0
16 TraesCS2A01G304400 chr2B 87.143 350 41 3 2467 2814 457685500 457685153 1.220000e-105 394.0
17 TraesCS2A01G304400 chr2B 85.714 343 36 9 2487 2818 6713814 6714154 2.680000e-92 350.0
18 TraesCS2A01G304400 chr2B 83.578 341 44 8 2298 2636 457685313 457684983 4.540000e-80 309.0
19 TraesCS2A01G304400 chr2B 89.796 147 12 2 2664 2807 6713814 6713960 7.990000e-43 185.0
20 TraesCS2A01G304400 chr7A 81.224 245 36 7 4315 4553 409248044 409248284 6.180000e-44 189.0
21 TraesCS2A01G304400 chr3D 95.122 41 0 2 4067 4106 569467555 569467516 3.910000e-06 63.9
22 TraesCS2A01G304400 chr7D 94.872 39 2 0 4068 4106 569401916 569401878 1.400000e-05 62.1
23 TraesCS2A01G304400 chr6D 100.000 28 0 0 4082 4109 309950098 309950071 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G304400 chr2A 522842695 522847370 4675 True 8636.000 8636 100.00000 1 4676 1 chr2A.!!$R1 4675
1 TraesCS2A01G304400 chr2D 386584000 386589700 5700 True 896.375 3986 89.27525 4 4676 8 chr2D.!!$R2 4672
2 TraesCS2A01G304400 chr2B 457683171 457687254 4083 True 1047.800 3397 87.51400 754 4676 5 chr2B.!!$R2 3922
3 TraesCS2A01G304400 chr2B 457692992 457693623 631 True 843.000 843 90.72300 4 637 1 chr2B.!!$R1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 1.079405 GCGATGGAAACTCCCGTCA 60.079 57.895 0.00 0.0 41.27 4.35 F
1083 1124 0.678048 CCTCCAAGCCAGGCAAGTAC 60.678 60.000 15.80 0.0 0.00 2.73 F
2270 3487 0.038892 CCTGCAAAGCGTTTCATGCT 60.039 50.000 9.59 0.0 43.43 3.79 F
3122 4360 0.449388 GGTGACTACAGCAATGCAGC 59.551 55.000 8.35 0.0 43.08 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1087 1128 0.178918 GAGGAGGGATAGTGGGAGGG 60.179 65.0 0.0 0.0 0.00 4.30 R
2978 4212 0.037882 AGTCGTGTCCAGCATGTCAG 60.038 55.0 0.0 0.0 35.64 3.51 R
3170 4408 0.039035 TCCCCACAACTAACATGCCC 59.961 55.0 0.0 0.0 0.00 5.36 R
4632 5926 0.251653 TCTCGGGAGCAGTGGTAAGT 60.252 55.0 0.0 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.319025 TGGATGTGGTGAGTGACCTA 57.681 50.000 0.00 0.00 46.32 3.08
130 131 1.079405 GCGATGGAAACTCCCGTCA 60.079 57.895 0.00 0.00 41.27 4.35
162 163 3.446442 AAGATCAATGTTGGTGCCTCT 57.554 42.857 0.00 0.00 0.00 3.69
267 269 2.296190 TGATACGATGATGGGTTCTCGG 59.704 50.000 0.00 0.00 35.52 4.63
306 308 1.517257 GCAGTCCCAGACGATGTCG 60.517 63.158 0.11 0.11 46.33 4.35
334 336 7.272515 GCTTACGCTTGATCTGAGATATAGAAC 59.727 40.741 0.00 0.00 0.00 3.01
412 414 2.034685 TCGATTGCTCGGAGATTGGTAG 59.965 50.000 9.69 0.00 45.10 3.18
415 417 3.795623 TTGCTCGGAGATTGGTAGTAC 57.204 47.619 9.69 0.00 33.89 2.73
449 451 2.228822 TCAAGAGCTTTGCGGGAATTTC 59.771 45.455 0.00 0.00 0.00 2.17
461 463 2.676342 CGGGAATTTCGAGGAATTTCGT 59.324 45.455 0.00 0.00 41.22 3.85
506 508 7.495934 GGAAGCTAATGAACTAGCACATCTTTA 59.504 37.037 5.49 0.49 45.69 1.85
516 518 8.542497 AACTAGCACATCTTTACGATAAACAA 57.458 30.769 0.00 0.00 0.00 2.83
546 548 8.207545 AGTTCTAGGATACATTGTCTTTGGATC 58.792 37.037 0.00 0.00 41.41 3.36
560 562 6.183361 TGTCTTTGGATCAATTATATCCCGGT 60.183 38.462 13.75 0.00 42.00 5.28
723 725 3.541242 TTTTGAGGGGGTCATCATTGT 57.459 42.857 0.00 0.00 33.45 2.71
724 726 4.666412 TTTTGAGGGGGTCATCATTGTA 57.334 40.909 0.00 0.00 33.45 2.41
725 727 4.666412 TTTGAGGGGGTCATCATTGTAA 57.334 40.909 0.00 0.00 33.45 2.41
726 728 4.879295 TTGAGGGGGTCATCATTGTAAT 57.121 40.909 0.00 0.00 33.45 1.89
727 729 4.879295 TGAGGGGGTCATCATTGTAATT 57.121 40.909 0.00 0.00 0.00 1.40
728 730 4.535781 TGAGGGGGTCATCATTGTAATTG 58.464 43.478 0.00 0.00 0.00 2.32
729 731 4.229353 TGAGGGGGTCATCATTGTAATTGA 59.771 41.667 0.00 0.00 0.00 2.57
730 732 5.200483 GAGGGGGTCATCATTGTAATTGAA 58.800 41.667 0.00 0.00 0.00 2.69
731 733 5.588845 AGGGGGTCATCATTGTAATTGAAA 58.411 37.500 0.00 0.00 0.00 2.69
732 734 5.422012 AGGGGGTCATCATTGTAATTGAAAC 59.578 40.000 0.00 0.00 0.00 2.78
733 735 5.339990 GGGGTCATCATTGTAATTGAAACG 58.660 41.667 0.00 0.00 0.00 3.60
734 736 5.124776 GGGGTCATCATTGTAATTGAAACGA 59.875 40.000 0.00 0.00 0.00 3.85
735 737 6.258160 GGGTCATCATTGTAATTGAAACGAG 58.742 40.000 0.00 0.00 0.00 4.18
736 738 6.093495 GGGTCATCATTGTAATTGAAACGAGA 59.907 38.462 0.00 0.00 0.00 4.04
737 739 7.201732 GGGTCATCATTGTAATTGAAACGAGAT 60.202 37.037 0.00 0.00 0.00 2.75
738 740 8.184192 GGTCATCATTGTAATTGAAACGAGATT 58.816 33.333 0.00 0.00 0.00 2.40
739 741 9.559958 GTCATCATTGTAATTGAAACGAGATTT 57.440 29.630 0.00 0.00 0.00 2.17
883 924 2.735772 ATCCCACGCTCCTCGCAAT 61.736 57.895 0.00 0.00 43.23 3.56
884 925 2.650813 ATCCCACGCTCCTCGCAATC 62.651 60.000 0.00 0.00 43.23 2.67
885 926 3.257561 CCACGCTCCTCGCAATCG 61.258 66.667 0.00 0.00 43.23 3.34
886 927 3.918220 CACGCTCCTCGCAATCGC 61.918 66.667 0.00 0.00 43.23 4.58
887 928 4.435436 ACGCTCCTCGCAATCGCA 62.435 61.111 0.00 0.00 43.23 5.10
888 929 3.188100 CGCTCCTCGCAATCGCAA 61.188 61.111 0.00 0.00 39.08 4.85
993 1034 2.365068 CCAGACGAACACGAGCACG 61.365 63.158 0.76 0.76 45.75 5.34
1081 1122 2.437897 CCTCCAAGCCAGGCAAGT 59.562 61.111 15.80 0.00 0.00 3.16
1082 1123 1.685224 CCTCCAAGCCAGGCAAGTA 59.315 57.895 15.80 0.00 0.00 2.24
1083 1124 0.678048 CCTCCAAGCCAGGCAAGTAC 60.678 60.000 15.80 0.00 0.00 2.73
1084 1125 0.678048 CTCCAAGCCAGGCAAGTACC 60.678 60.000 15.80 0.00 0.00 3.34
1085 1126 1.678970 CCAAGCCAGGCAAGTACCC 60.679 63.158 15.80 0.00 0.00 3.69
1086 1127 1.678970 CAAGCCAGGCAAGTACCCC 60.679 63.158 15.80 0.00 0.00 4.95
1087 1128 2.919096 AAGCCAGGCAAGTACCCCC 61.919 63.158 15.80 0.00 0.00 5.40
1102 1143 3.046882 CCCCCTCCCACTATCCCT 58.953 66.667 0.00 0.00 0.00 4.20
1103 1144 1.152008 CCCCCTCCCACTATCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
1104 1145 1.152008 CCCCTCCCACTATCCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
1105 1146 1.679969 CCCCTCCCACTATCCCTCCT 61.680 65.000 0.00 0.00 0.00 3.69
1106 1147 0.178918 CCCTCCCACTATCCCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
1107 1148 0.863956 CCTCCCACTATCCCTCCTCT 59.136 60.000 0.00 0.00 0.00 3.69
1108 1149 2.074579 CCTCCCACTATCCCTCCTCTA 58.925 57.143 0.00 0.00 0.00 2.43
1109 1150 2.657459 CCTCCCACTATCCCTCCTCTAT 59.343 54.545 0.00 0.00 0.00 1.98
1110 1151 3.078305 CCTCCCACTATCCCTCCTCTATT 59.922 52.174 0.00 0.00 0.00 1.73
1111 1152 4.295238 CCTCCCACTATCCCTCCTCTATTA 59.705 50.000 0.00 0.00 0.00 0.98
1112 1153 5.042979 CCTCCCACTATCCCTCCTCTATTAT 60.043 48.000 0.00 0.00 0.00 1.28
1113 1154 6.093617 TCCCACTATCCCTCCTCTATTATC 57.906 45.833 0.00 0.00 0.00 1.75
1114 1155 5.043281 TCCCACTATCCCTCCTCTATTATCC 60.043 48.000 0.00 0.00 0.00 2.59
1138 1416 2.023673 TGGGGTTTGAATGATGCGATC 58.976 47.619 0.00 0.00 0.00 3.69
1304 1582 3.564225 GGTTCGTCATAGGCTAAAATGGG 59.436 47.826 0.00 0.00 0.00 4.00
1342 1620 2.034053 TGGCTGTGGTTTTCGATTGAAC 59.966 45.455 0.00 0.00 32.71 3.18
1440 1718 4.845530 ATATGGGTGGGGAGTACTAGAA 57.154 45.455 0.00 0.00 0.00 2.10
1441 1719 2.544844 TGGGTGGGGAGTACTAGAAG 57.455 55.000 0.00 0.00 0.00 2.85
1448 1726 3.289836 GGGGAGTACTAGAAGGACTGAC 58.710 54.545 0.00 0.00 0.00 3.51
1460 1738 4.949856 AGAAGGACTGACACACAATTTGTT 59.050 37.500 0.00 0.00 35.67 2.83
1461 1739 4.637483 AGGACTGACACACAATTTGTTG 57.363 40.909 0.00 4.99 35.67 3.33
1462 1740 4.269183 AGGACTGACACACAATTTGTTGA 58.731 39.130 14.48 0.00 35.67 3.18
1463 1741 4.096382 AGGACTGACACACAATTTGTTGAC 59.904 41.667 14.48 10.60 35.67 3.18
1464 1742 4.096382 GGACTGACACACAATTTGTTGACT 59.904 41.667 14.48 0.00 35.67 3.41
1465 1743 4.985413 ACTGACACACAATTTGTTGACTG 58.015 39.130 14.48 13.78 35.67 3.51
1484 1762 8.461222 GTTGACTGACCATTTTATCATTCATGA 58.539 33.333 0.00 0.00 41.70 3.07
1492 1770 7.121168 ACCATTTTATCATTCATGAACTGACGT 59.879 33.333 11.07 5.09 40.69 4.34
1493 1771 8.611757 CCATTTTATCATTCATGAACTGACGTA 58.388 33.333 11.07 4.23 40.69 3.57
1519 1797 5.648572 ACACCGATAACTTAGACTGTTAGC 58.351 41.667 0.00 0.00 34.03 3.09
1521 1799 5.744345 CACCGATAACTTAGACTGTTAGCTG 59.256 44.000 0.00 0.00 35.08 4.24
1528 1806 5.715070 ACTTAGACTGTTAGCTGTGATGAC 58.285 41.667 0.00 0.00 0.00 3.06
1650 1928 4.155462 GGTGAGTATCGTGTGAGTTGTAGA 59.845 45.833 0.00 0.00 38.61 2.59
1665 2868 7.497249 GTGAGTTGTAGATGCTCATAAAGGATT 59.503 37.037 0.00 0.00 40.72 3.01
1669 2872 8.651588 GTTGTAGATGCTCATAAAGGATTATCG 58.348 37.037 0.00 0.00 35.96 2.92
1670 2873 7.323420 TGTAGATGCTCATAAAGGATTATCGG 58.677 38.462 0.00 0.00 35.96 4.18
1676 2879 5.163814 GCTCATAAAGGATTATCGGACATGC 60.164 44.000 0.00 0.00 29.08 4.06
1703 2906 6.884832 TCTTAGAGACAAGAACCAGACAAAA 58.115 36.000 0.00 0.00 31.63 2.44
1704 2907 7.509546 TCTTAGAGACAAGAACCAGACAAAAT 58.490 34.615 0.00 0.00 31.63 1.82
1727 2930 9.618890 AAATATATTTCTGAACTAGCAGCTTGA 57.381 29.630 11.12 0.00 35.86 3.02
1728 2931 9.790344 AATATATTTCTGAACTAGCAGCTTGAT 57.210 29.630 11.12 0.00 35.86 2.57
1729 2932 7.727331 ATATTTCTGAACTAGCAGCTTGATC 57.273 36.000 11.12 8.91 35.86 2.92
1730 2933 4.541973 TTCTGAACTAGCAGCTTGATCA 57.458 40.909 14.44 14.44 35.86 2.92
1734 2938 5.942236 TCTGAACTAGCAGCTTGATCATTTT 59.058 36.000 15.32 0.00 35.86 1.82
1739 2943 9.578439 GAACTAGCAGCTTGATCATTTTTAATT 57.422 29.630 11.12 0.00 0.00 1.40
1745 2949 7.414762 GCAGCTTGATCATTTTTAATTGGCAAT 60.415 33.333 6.96 6.96 0.00 3.56
1777 2981 6.172630 TGCTAGTTTGTTCATCTCTATGCAA 58.827 36.000 0.00 0.00 32.76 4.08
1791 2995 6.970484 TCTCTATGCAAGAAAAACAGGAAAC 58.030 36.000 0.00 0.00 32.46 2.78
1798 3002 5.971792 GCAAGAAAAACAGGAAACAGACTAC 59.028 40.000 0.00 0.00 0.00 2.73
1799 3003 6.495706 CAAGAAAAACAGGAAACAGACTACC 58.504 40.000 0.00 0.00 0.00 3.18
1800 3004 5.751586 AGAAAAACAGGAAACAGACTACCA 58.248 37.500 0.00 0.00 0.00 3.25
1801 3005 5.823045 AGAAAAACAGGAAACAGACTACCAG 59.177 40.000 0.00 0.00 0.00 4.00
1802 3006 4.772886 AAACAGGAAACAGACTACCAGT 57.227 40.909 0.00 0.00 0.00 4.00
1803 3007 5.881923 AAACAGGAAACAGACTACCAGTA 57.118 39.130 0.00 0.00 0.00 2.74
1807 3011 6.465084 ACAGGAAACAGACTACCAGTATTTC 58.535 40.000 0.00 0.00 0.00 2.17
1850 3056 7.878127 TGAGGAAAATACTACATAGCTTATGGC 59.122 37.037 0.00 0.00 40.47 4.40
1860 3066 8.386264 ACTACATAGCTTATGGCATTTAATCCT 58.614 33.333 4.78 0.00 44.79 3.24
1868 3074 8.588472 GCTTATGGCATTTAATCCTATTTCCTT 58.412 33.333 4.78 0.00 41.35 3.36
1869 3075 9.918630 CTTATGGCATTTAATCCTATTTCCTTG 57.081 33.333 4.78 0.00 0.00 3.61
1870 3076 7.919385 ATGGCATTTAATCCTATTTCCTTGT 57.081 32.000 0.00 0.00 0.00 3.16
1872 3078 6.894654 TGGCATTTAATCCTATTTCCTTGTCA 59.105 34.615 0.00 0.00 0.00 3.58
1884 3090 6.672266 ATTTCCTTGTCAGTTAGAGTCTCA 57.328 37.500 0.00 0.00 0.00 3.27
1926 3132 7.660112 ACATGAGTTGCATTCATCTTTTGTTA 58.340 30.769 10.37 0.00 34.15 2.41
1959 3176 8.978874 ATAAAATGTGTATCTTATGGCAGTGA 57.021 30.769 0.00 0.00 0.00 3.41
1971 3188 2.722094 TGGCAGTGAAACAACTTCTGT 58.278 42.857 0.00 0.00 41.43 3.41
2003 3220 7.575414 TTGTAGTGTTTAATTCTTGGCAAGA 57.425 32.000 25.38 25.38 35.26 3.02
2007 3224 5.359576 AGTGTTTAATTCTTGGCAAGACACA 59.640 36.000 31.70 24.08 37.23 3.72
2010 3227 6.040278 TGTTTAATTCTTGGCAAGACACATGA 59.960 34.615 28.58 14.06 37.23 3.07
2014 3231 3.141398 TCTTGGCAAGACACATGAGTTC 58.859 45.455 25.38 0.00 31.20 3.01
2029 3246 5.046735 ACATGAGTTCTGTCTTGCTGTAGAT 60.047 40.000 0.00 0.00 0.00 1.98
2032 3249 5.126222 TGAGTTCTGTCTTGCTGTAGATAGG 59.874 44.000 0.00 0.00 35.01 2.57
2035 3252 3.954904 TCTGTCTTGCTGTAGATAGGGAC 59.045 47.826 0.00 0.00 35.01 4.46
2073 3290 9.607988 TTTATGGAATGTACATGAGAATTACGT 57.392 29.630 9.63 0.00 0.00 3.57
2103 3320 4.327680 AGGTGCTCCTGAAAGAACATTAC 58.672 43.478 6.51 0.00 43.33 1.89
2115 3332 7.660112 TGAAAGAACATTACACATGCATTCTT 58.340 30.769 0.00 0.00 36.69 2.52
2116 3333 8.143193 TGAAAGAACATTACACATGCATTCTTT 58.857 29.630 15.19 15.19 43.81 2.52
2117 3334 8.891671 AAAGAACATTACACATGCATTCTTTT 57.108 26.923 11.28 0.47 40.30 2.27
2118 3335 8.891671 AAGAACATTACACATGCATTCTTTTT 57.108 26.923 0.00 0.00 32.44 1.94
2148 3365 4.414999 GGGTGACGAAAAAGAATACCAC 57.585 45.455 0.00 0.00 0.00 4.16
2149 3366 4.070009 GGGTGACGAAAAAGAATACCACT 58.930 43.478 0.00 0.00 0.00 4.00
2150 3367 4.153655 GGGTGACGAAAAAGAATACCACTC 59.846 45.833 0.00 0.00 0.00 3.51
2220 3437 2.105821 TGGCAACCTTGTACTGCTAGTT 59.894 45.455 4.30 0.00 36.32 2.24
2233 3450 8.183104 TGTACTGCTAGTTTGCTCATCTATAT 57.817 34.615 0.00 0.00 0.00 0.86
2236 3453 5.240891 TGCTAGTTTGCTCATCTATATGCC 58.759 41.667 0.00 0.00 32.76 4.40
2242 3459 4.335400 TGCTCATCTATATGCCGAAACA 57.665 40.909 0.00 0.00 32.76 2.83
2244 3461 5.122519 TGCTCATCTATATGCCGAAACAAA 58.877 37.500 0.00 0.00 32.76 2.83
2246 3463 5.909610 GCTCATCTATATGCCGAAACAAAAC 59.090 40.000 0.00 0.00 32.76 2.43
2247 3464 6.458206 GCTCATCTATATGCCGAAACAAAACA 60.458 38.462 0.00 0.00 32.76 2.83
2253 3470 2.235016 TGCCGAAACAAAACATAGCCT 58.765 42.857 0.00 0.00 0.00 4.58
2260 3477 3.030668 ACAAAACATAGCCTGCAAAGC 57.969 42.857 0.04 0.04 0.00 3.51
2262 3479 1.247567 AAACATAGCCTGCAAAGCGT 58.752 45.000 2.93 0.00 34.64 5.07
2265 3482 1.200020 ACATAGCCTGCAAAGCGTTTC 59.800 47.619 2.93 0.00 34.64 2.78
2270 3487 0.038892 CCTGCAAAGCGTTTCATGCT 60.039 50.000 9.59 0.00 43.43 3.79
2273 3490 3.307674 CTGCAAAGCGTTTCATGCTAAA 58.692 40.909 9.59 0.00 40.06 1.85
2285 3502 9.159470 GCGTTTCATGCTAAAATATTACTCTTC 57.841 33.333 0.00 0.00 0.00 2.87
2318 3535 4.892934 TGTAACCCTTTTTGCTCATCTGTT 59.107 37.500 0.00 0.00 0.00 3.16
2336 3553 9.042450 TCATCTGTTTTCTAATACTTGGTAGGA 57.958 33.333 0.00 0.00 0.00 2.94
2348 3565 8.650143 AATACTTGGTAGGATGTTTGATTTGT 57.350 30.769 0.00 0.00 0.00 2.83
2352 3569 4.218200 TGGTAGGATGTTTGATTTGTGCTG 59.782 41.667 0.00 0.00 0.00 4.41
2354 3571 4.510038 AGGATGTTTGATTTGTGCTGAC 57.490 40.909 0.00 0.00 0.00 3.51
2370 3587 3.814842 TGCTGACTGTTAACATGGACAAG 59.185 43.478 9.13 0.00 0.00 3.16
2376 3593 9.214957 CTGACTGTTAACATGGACAAGTAATAA 57.785 33.333 9.13 0.00 0.00 1.40
2377 3594 9.562408 TGACTGTTAACATGGACAAGTAATAAA 57.438 29.630 9.13 0.00 0.00 1.40
2381 3598 9.005777 TGTTAACATGGACAAGTAATAAAGGTC 57.994 33.333 3.59 0.00 0.00 3.85
2385 3602 7.788026 ACATGGACAAGTAATAAAGGTCGATA 58.212 34.615 0.00 0.00 0.00 2.92
2406 3623 8.588472 TCGATAGAATTTAGGTGATCATCATGT 58.412 33.333 9.06 0.00 46.15 3.21
2430 3647 3.072622 AGCCACAGATGCTCATACATGAT 59.927 43.478 0.00 0.00 36.02 2.45
2445 3662 4.090761 ACATGATCATCACCCATACACC 57.909 45.455 4.86 0.00 0.00 4.16
2459 3676 3.890147 CCATACACCTGGGAGACTAGTAC 59.110 52.174 0.00 0.00 37.19 2.73
2463 3680 3.181420 ACACCTGGGAGACTAGTACTGTT 60.181 47.826 5.39 0.00 37.19 3.16
2469 3686 5.823312 TGGGAGACTAGTACTGTTACATGA 58.177 41.667 5.39 0.00 0.00 3.07
2474 3691 8.561212 GGAGACTAGTACTGTTACATGATACTG 58.439 40.741 5.39 3.64 0.00 2.74
2477 3694 9.719279 GACTAGTACTGTTACATGATACTGTTC 57.281 37.037 5.39 11.96 0.00 3.18
2499 3716 3.007182 CACCCTTTTTGCTCATCCATGTT 59.993 43.478 0.00 0.00 0.00 2.71
2519 3736 4.019321 TGTTCTAATTCTTGGTAGGCTGCT 60.019 41.667 1.79 0.00 0.00 4.24
2533 3750 1.335689 GGCTGCTTGAGTTGCTTTCTG 60.336 52.381 0.00 0.00 0.00 3.02
2546 3763 5.126061 AGTTGCTTTCTGCTGTAAATATGGG 59.874 40.000 0.00 0.00 43.37 4.00
2610 3827 7.497249 GTGTCATAGAAGCTCATAAAGAACCAT 59.503 37.037 0.00 0.00 0.00 3.55
2622 3839 6.597672 TCATAAAGAACCATCACACATACACC 59.402 38.462 0.00 0.00 0.00 4.16
2624 3841 3.942829 AGAACCATCACACATACACCTG 58.057 45.455 0.00 0.00 0.00 4.00
2625 3842 2.787473 ACCATCACACATACACCTGG 57.213 50.000 0.00 0.00 0.00 4.45
2636 3853 4.338682 CACATACACCTGGGAGACTAGTAC 59.661 50.000 0.00 0.00 37.19 2.73
2645 3862 4.017126 TGGGAGACTAGTACTGTGACATG 58.983 47.826 5.39 0.00 0.00 3.21
2653 3870 7.612244 AGACTAGTACTGTGACATGATACTGTT 59.388 37.037 5.39 7.34 32.40 3.16
2655 3872 9.239551 ACTAGTACTGTGACATGATACTGTTAA 57.760 33.333 5.39 3.64 32.40 2.01
2658 3875 5.488341 ACTGTGACATGATACTGTTAACCC 58.512 41.667 0.00 0.00 0.00 4.11
2663 3880 7.504238 TGTGACATGATACTGTTAACCCTTTTT 59.496 33.333 0.00 0.00 0.00 1.94
2666 3883 6.493458 ACATGATACTGTTAACCCTTTTTGCT 59.507 34.615 0.00 0.00 0.00 3.91
2667 3884 6.569179 TGATACTGTTAACCCTTTTTGCTC 57.431 37.500 2.48 0.00 0.00 4.26
2668 3885 6.065374 TGATACTGTTAACCCTTTTTGCTCA 58.935 36.000 2.48 0.00 0.00 4.26
2669 3886 6.719370 TGATACTGTTAACCCTTTTTGCTCAT 59.281 34.615 2.48 0.00 0.00 2.90
2695 3912 3.206964 GTCCTAATTCTTGGTAGGCTGC 58.793 50.000 0.00 0.00 37.41 5.25
2696 3913 3.115390 TCCTAATTCTTGGTAGGCTGCT 58.885 45.455 1.79 0.00 37.41 4.24
2701 3918 0.615331 TCTTGGTAGGCTGCTTGAGG 59.385 55.000 1.79 0.00 0.00 3.86
2726 3943 5.709631 TGCTTTCTGCTGTAAATATGGACAA 59.290 36.000 0.00 0.00 43.37 3.18
2783 4017 8.206189 TCATGTGTCATAGATGCTCATAAAGAA 58.794 33.333 0.00 0.00 30.46 2.52
2801 4035 9.161629 CATAAAGAACCATCACACATACACTTA 57.838 33.333 0.00 0.00 0.00 2.24
2806 4040 5.967088 ACCATCACACATACACTTAGAGAC 58.033 41.667 0.00 0.00 0.00 3.36
2809 4043 7.396339 ACCATCACACATACACTTAGAGACTAA 59.604 37.037 0.00 0.00 0.00 2.24
2814 4048 9.938670 CACACATACACTTAGAGACTAATAGTC 57.061 37.037 12.26 12.26 45.38 2.59
2827 4061 4.887748 ACTAATAGTCGGATTCTGGCATG 58.112 43.478 0.00 0.00 0.00 4.06
2835 4069 2.882761 CGGATTCTGGCATGTCATCAAT 59.117 45.455 0.00 2.07 0.00 2.57
2838 4072 5.163784 CGGATTCTGGCATGTCATCAATATC 60.164 44.000 0.00 0.00 0.00 1.63
2846 4080 3.862877 TGTCATCAATATCCACCAGGG 57.137 47.619 0.00 0.00 34.83 4.45
2861 4095 1.110442 CAGGGTTTTGGTGCTTGTGA 58.890 50.000 0.00 0.00 0.00 3.58
2867 4101 4.038642 GGGTTTTGGTGCTTGTGATTTCTA 59.961 41.667 0.00 0.00 0.00 2.10
2874 4108 6.446318 TGGTGCTTGTGATTTCTATTTGTTC 58.554 36.000 0.00 0.00 0.00 3.18
2876 4110 7.147976 GGTGCTTGTGATTTCTATTTGTTCTT 58.852 34.615 0.00 0.00 0.00 2.52
2877 4111 7.327032 GGTGCTTGTGATTTCTATTTGTTCTTC 59.673 37.037 0.00 0.00 0.00 2.87
2902 4136 8.482943 TCTGTGCTTTACATAGCCTCTTATTTA 58.517 33.333 0.00 0.00 40.49 1.40
2904 4138 9.627123 TGTGCTTTACATAGCCTCTTATTTATT 57.373 29.630 0.00 0.00 40.49 1.40
2956 4190 6.143118 CGATTTGTTTTGGATTTTCGTTGCTA 59.857 34.615 0.00 0.00 0.00 3.49
2957 4191 6.576551 TTTGTTTTGGATTTTCGTTGCTAC 57.423 33.333 0.00 0.00 0.00 3.58
2958 4192 4.612943 TGTTTTGGATTTTCGTTGCTACC 58.387 39.130 0.00 0.00 0.00 3.18
2976 4210 6.429151 TGCTACCAGTATTCCTTCTGTACTA 58.571 40.000 0.00 0.00 0.00 1.82
2977 4211 6.893554 TGCTACCAGTATTCCTTCTGTACTAA 59.106 38.462 0.00 0.00 0.00 2.24
2978 4212 7.147949 TGCTACCAGTATTCCTTCTGTACTAAC 60.148 40.741 0.00 0.00 0.00 2.34
2979 4213 7.068470 GCTACCAGTATTCCTTCTGTACTAACT 59.932 40.741 0.00 0.00 0.00 2.24
2980 4214 7.171630 ACCAGTATTCCTTCTGTACTAACTG 57.828 40.000 0.00 0.00 33.34 3.16
2981 4215 6.952358 ACCAGTATTCCTTCTGTACTAACTGA 59.048 38.462 0.00 0.00 35.05 3.41
2982 4216 7.093858 ACCAGTATTCCTTCTGTACTAACTGAC 60.094 40.741 0.00 0.00 35.05 3.51
2984 4218 8.470805 CAGTATTCCTTCTGTACTAACTGACAT 58.529 37.037 0.00 0.00 35.05 3.06
2993 4230 3.045601 ACTAACTGACATGCTGGACAC 57.954 47.619 0.00 0.00 0.00 3.67
3004 4241 1.134521 TGCTGGACACGACTTTTGTCT 60.135 47.619 3.50 0.00 46.76 3.41
3005 4242 1.940613 GCTGGACACGACTTTTGTCTT 59.059 47.619 3.50 0.00 46.76 3.01
3010 4247 4.807304 TGGACACGACTTTTGTCTTAACTC 59.193 41.667 3.50 0.00 46.76 3.01
3012 4249 5.465724 GGACACGACTTTTGTCTTAACTCAT 59.534 40.000 3.50 0.00 46.76 2.90
3013 4250 6.346678 GGACACGACTTTTGTCTTAACTCATC 60.347 42.308 3.50 0.00 46.76 2.92
3014 4251 6.046593 ACACGACTTTTGTCTTAACTCATCA 58.953 36.000 0.00 0.00 46.76 3.07
3032 4269 8.668510 ACTCATCAATTATGCTCGAAAATAGT 57.331 30.769 0.00 0.00 35.38 2.12
3069 4306 6.855271 AATGCAGAATTCTTGGCATAAGGCA 61.855 40.000 25.32 19.02 45.52 4.75
3110 4348 9.916360 TCATTATAAACACTCTAGAGGTGACTA 57.084 33.333 23.50 14.16 44.43 2.59
3119 4357 2.393271 AGAGGTGACTACAGCAATGC 57.607 50.000 0.00 0.00 45.57 3.56
3122 4360 0.449388 GGTGACTACAGCAATGCAGC 59.551 55.000 8.35 0.00 43.08 5.25
3133 4371 3.000041 AGCAATGCAGCATGAAAATGTG 59.000 40.909 9.18 2.44 39.69 3.21
3139 4377 4.300803 TGCAGCATGAAAATGTGAAGAAC 58.699 39.130 0.00 0.00 39.69 3.01
3160 4398 4.270008 ACTGAAGTTTGCTGTGGTAGTTT 58.730 39.130 0.00 0.00 0.00 2.66
3161 4399 5.433526 ACTGAAGTTTGCTGTGGTAGTTTA 58.566 37.500 0.00 0.00 0.00 2.01
3162 4400 5.527582 ACTGAAGTTTGCTGTGGTAGTTTAG 59.472 40.000 0.00 0.00 0.00 1.85
3163 4401 4.819630 TGAAGTTTGCTGTGGTAGTTTAGG 59.180 41.667 0.00 0.00 0.00 2.69
3164 4402 4.699925 AGTTTGCTGTGGTAGTTTAGGA 57.300 40.909 0.00 0.00 0.00 2.94
3165 4403 4.642429 AGTTTGCTGTGGTAGTTTAGGAG 58.358 43.478 0.00 0.00 0.00 3.69
3166 4404 4.347000 AGTTTGCTGTGGTAGTTTAGGAGA 59.653 41.667 0.00 0.00 0.00 3.71
3167 4405 4.967084 TTGCTGTGGTAGTTTAGGAGAA 57.033 40.909 0.00 0.00 0.00 2.87
3168 4406 4.267349 TGCTGTGGTAGTTTAGGAGAAC 57.733 45.455 0.00 0.00 0.00 3.01
3169 4407 3.901844 TGCTGTGGTAGTTTAGGAGAACT 59.098 43.478 0.00 0.00 42.27 3.01
3170 4408 4.246458 GCTGTGGTAGTTTAGGAGAACTG 58.754 47.826 0.81 0.00 39.99 3.16
3171 4409 4.822026 CTGTGGTAGTTTAGGAGAACTGG 58.178 47.826 0.81 0.00 39.99 4.00
3172 4410 3.581332 TGTGGTAGTTTAGGAGAACTGGG 59.419 47.826 0.81 0.00 39.99 4.45
3173 4411 2.570302 TGGTAGTTTAGGAGAACTGGGC 59.430 50.000 0.81 0.00 39.99 5.36
3174 4412 2.570302 GGTAGTTTAGGAGAACTGGGCA 59.430 50.000 0.81 0.00 39.99 5.36
3199 4437 3.814504 AGTTGTGGGGATTGAATGAGT 57.185 42.857 0.00 0.00 0.00 3.41
3202 4440 2.170166 TGTGGGGATTGAATGAGTTGC 58.830 47.619 0.00 0.00 0.00 4.17
3203 4441 1.133025 GTGGGGATTGAATGAGTTGCG 59.867 52.381 0.00 0.00 0.00 4.85
3231 4469 7.824779 ACTCCTTTTTACATCTCTAAATTCGCT 59.175 33.333 0.00 0.00 0.00 4.93
3232 4470 8.197988 TCCTTTTTACATCTCTAAATTCGCTC 57.802 34.615 0.00 0.00 0.00 5.03
3233 4471 7.822334 TCCTTTTTACATCTCTAAATTCGCTCA 59.178 33.333 0.00 0.00 0.00 4.26
3234 4472 8.616076 CCTTTTTACATCTCTAAATTCGCTCAT 58.384 33.333 0.00 0.00 0.00 2.90
3235 4473 9.430838 CTTTTTACATCTCTAAATTCGCTCATG 57.569 33.333 0.00 0.00 0.00 3.07
3236 4474 6.530913 TTACATCTCTAAATTCGCTCATGC 57.469 37.500 0.00 0.00 0.00 4.06
3237 4475 4.701765 ACATCTCTAAATTCGCTCATGCT 58.298 39.130 0.00 0.00 36.97 3.79
3238 4476 5.121811 ACATCTCTAAATTCGCTCATGCTT 58.878 37.500 0.00 0.00 36.97 3.91
3239 4477 5.007430 ACATCTCTAAATTCGCTCATGCTTG 59.993 40.000 0.00 0.00 36.97 4.01
3240 4478 3.310774 TCTCTAAATTCGCTCATGCTTGC 59.689 43.478 0.00 0.00 36.97 4.01
3241 4479 3.273434 TCTAAATTCGCTCATGCTTGCT 58.727 40.909 0.00 0.00 36.97 3.91
3242 4480 2.273370 AAATTCGCTCATGCTTGCTG 57.727 45.000 0.00 0.00 36.97 4.41
3243 4481 1.456296 AATTCGCTCATGCTTGCTGA 58.544 45.000 0.00 0.00 36.97 4.26
3244 4482 1.676746 ATTCGCTCATGCTTGCTGAT 58.323 45.000 0.00 0.00 36.97 2.90
3245 4483 1.456296 TTCGCTCATGCTTGCTGATT 58.544 45.000 0.00 0.00 36.97 2.57
3246 4484 2.314323 TCGCTCATGCTTGCTGATTA 57.686 45.000 0.00 0.00 36.97 1.75
3247 4485 1.935873 TCGCTCATGCTTGCTGATTAC 59.064 47.619 0.00 0.00 36.97 1.89
3248 4486 1.003116 CGCTCATGCTTGCTGATTACC 60.003 52.381 0.00 0.00 36.97 2.85
3249 4487 2.295885 GCTCATGCTTGCTGATTACCT 58.704 47.619 0.00 0.00 36.03 3.08
3250 4488 2.033049 GCTCATGCTTGCTGATTACCTG 59.967 50.000 0.00 0.00 36.03 4.00
3263 4521 5.468746 GCTGATTACCTGTTCTTTGTGTGTA 59.531 40.000 0.00 0.00 0.00 2.90
3403 4661 0.689055 AGCTGACTGCATGGACTTCA 59.311 50.000 7.11 0.00 45.94 3.02
3469 4727 3.253188 CGGTCATCTTCCAGCAAAAGAAA 59.747 43.478 0.42 0.00 36.41 2.52
3470 4728 4.614535 CGGTCATCTTCCAGCAAAAGAAAG 60.615 45.833 0.42 0.00 36.41 2.62
3645 4909 3.702330 GTTTCTTTACGGCACTGCTTTT 58.298 40.909 0.00 0.00 0.00 2.27
3711 4975 1.747355 CCCTGCAGTGTGATCCAATTC 59.253 52.381 13.81 0.00 0.00 2.17
3845 5115 6.320418 TCAAATCATGTCTGATGGATTCTTGG 59.680 38.462 0.00 0.00 41.34 3.61
3933 5205 3.057806 GTGTTTGTGTGGTGGTATAAGCC 60.058 47.826 0.00 0.00 0.00 4.35
3936 5208 1.982226 TGTGTGGTGGTATAAGCCTGT 59.018 47.619 0.00 0.00 0.00 4.00
4053 5330 4.999950 AGTGAGGTAAAACATGAGAGCTTG 59.000 41.667 0.00 0.00 0.00 4.01
4057 5334 4.288626 AGGTAAAACATGAGAGCTTGGGTA 59.711 41.667 0.00 0.00 0.00 3.69
4058 5335 5.044846 AGGTAAAACATGAGAGCTTGGGTAT 60.045 40.000 0.00 0.00 0.00 2.73
4059 5336 5.652452 GGTAAAACATGAGAGCTTGGGTATT 59.348 40.000 0.00 0.00 0.00 1.89
4060 5337 6.826741 GGTAAAACATGAGAGCTTGGGTATTA 59.173 38.462 0.00 0.00 0.00 0.98
4061 5338 6.759497 AAAACATGAGAGCTTGGGTATTAC 57.241 37.500 0.00 0.00 0.00 1.89
4062 5339 5.435686 AACATGAGAGCTTGGGTATTACA 57.564 39.130 0.00 0.00 0.00 2.41
4063 5340 5.028549 ACATGAGAGCTTGGGTATTACAG 57.971 43.478 0.00 0.00 0.00 2.74
4064 5341 4.471386 ACATGAGAGCTTGGGTATTACAGT 59.529 41.667 0.00 0.00 0.00 3.55
4065 5342 5.045578 ACATGAGAGCTTGGGTATTACAGTT 60.046 40.000 0.00 0.00 0.00 3.16
4066 5343 6.156256 ACATGAGAGCTTGGGTATTACAGTTA 59.844 38.462 0.00 0.00 0.00 2.24
4073 5350 9.694137 GAGCTTGGGTATTACAGTTATACTAAG 57.306 37.037 9.11 12.91 32.38 2.18
4074 5351 8.148999 AGCTTGGGTATTACAGTTATACTAAGC 58.851 37.037 25.14 25.14 41.79 3.09
4080 5357 3.454371 ACAGTTATACTAAGCCTGCGG 57.546 47.619 0.00 0.00 0.00 5.69
4112 5389 4.890988 TGGATTGGAGGGAGTAGATGTTA 58.109 43.478 0.00 0.00 0.00 2.41
4228 5510 3.573598 TCATCAAATGCGAATTTGCGTT 58.426 36.364 22.05 17.82 45.62 4.84
4268 5550 6.286240 AGAAGGGGCATAAATGAACTTTTC 57.714 37.500 0.00 0.00 0.00 2.29
4300 5582 2.356535 CCCCTTCTTCCATCAAGACAGG 60.357 54.545 0.00 0.00 41.13 4.00
4332 5614 2.597510 GGCACCAGAACCACACCC 60.598 66.667 0.00 0.00 0.00 4.61
4333 5615 2.597510 GCACCAGAACCACACCCC 60.598 66.667 0.00 0.00 0.00 4.95
4393 5675 4.492160 GCGATGGCGACGACTCCA 62.492 66.667 0.65 0.00 40.82 3.86
4608 5902 1.380524 GAGGTACTGCTGCTACTCGA 58.619 55.000 0.00 0.00 41.55 4.04
4618 5912 0.251209 TGCTACTCGACCTCACACCT 60.251 55.000 0.00 0.00 0.00 4.00
4619 5913 1.003928 TGCTACTCGACCTCACACCTA 59.996 52.381 0.00 0.00 0.00 3.08
4620 5914 2.089980 GCTACTCGACCTCACACCTAA 58.910 52.381 0.00 0.00 0.00 2.69
4621 5915 2.159407 GCTACTCGACCTCACACCTAAC 60.159 54.545 0.00 0.00 0.00 2.34
4623 5917 1.887198 ACTCGACCTCACACCTAACTG 59.113 52.381 0.00 0.00 0.00 3.16
4624 5918 2.160205 CTCGACCTCACACCTAACTGA 58.840 52.381 0.00 0.00 0.00 3.41
4625 5919 1.884579 TCGACCTCACACCTAACTGAC 59.115 52.381 0.00 0.00 0.00 3.51
4626 5920 1.067776 CGACCTCACACCTAACTGACC 60.068 57.143 0.00 0.00 0.00 4.02
4627 5921 1.275573 GACCTCACACCTAACTGACCC 59.724 57.143 0.00 0.00 0.00 4.46
4628 5922 1.132817 ACCTCACACCTAACTGACCCT 60.133 52.381 0.00 0.00 0.00 4.34
4629 5923 1.276421 CCTCACACCTAACTGACCCTG 59.724 57.143 0.00 0.00 0.00 4.45
4630 5924 1.971357 CTCACACCTAACTGACCCTGT 59.029 52.381 0.00 0.00 0.00 4.00
4631 5925 2.368875 CTCACACCTAACTGACCCTGTT 59.631 50.000 0.00 0.00 0.00 3.16
4632 5926 3.576982 CTCACACCTAACTGACCCTGTTA 59.423 47.826 0.00 0.00 0.00 2.41
4633 5927 3.322828 TCACACCTAACTGACCCTGTTAC 59.677 47.826 0.00 0.00 0.00 2.50
4634 5928 3.323979 CACACCTAACTGACCCTGTTACT 59.676 47.826 0.00 0.00 0.00 2.24
4637 5931 5.011431 ACACCTAACTGACCCTGTTACTTAC 59.989 44.000 0.00 0.00 0.00 2.34
4642 5936 3.323979 ACTGACCCTGTTACTTACCACTG 59.676 47.826 0.00 0.00 0.00 3.66
4643 5937 2.038033 TGACCCTGTTACTTACCACTGC 59.962 50.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.342406 TGGATTGGGAACTCTCTCCA 57.658 50.000 0.00 0.00 37.20 3.86
1 2 2.774234 TGATGGATTGGGAACTCTCTCC 59.226 50.000 0.00 0.00 34.41 3.71
2 3 4.450053 CTTGATGGATTGGGAACTCTCTC 58.550 47.826 0.00 0.00 0.00 3.20
9 10 1.477553 GCTGCTTGATGGATTGGGAA 58.522 50.000 0.00 0.00 0.00 3.97
14 15 0.749454 GACGGGCTGCTTGATGGATT 60.749 55.000 0.00 0.00 0.00 3.01
63 64 4.782019 TGTTTGTTTGTCTGTTTCAGCT 57.218 36.364 0.00 0.00 0.00 4.24
284 286 1.003580 ACATCGTCTGGGACTGCAAAT 59.996 47.619 0.00 0.00 0.00 2.32
291 293 1.226717 GCTCGACATCGTCTGGGAC 60.227 63.158 0.54 0.00 40.80 4.46
316 318 7.767250 ATCACCGTTCTATATCTCAGATCAA 57.233 36.000 0.00 0.00 0.00 2.57
334 336 6.794374 TGGTCATCAATTTCAATTATCACCG 58.206 36.000 0.00 0.00 0.00 4.94
370 372 3.420839 CACTTGAAGTGTTCCACCAAC 57.579 47.619 16.84 0.00 41.19 3.77
384 386 0.601057 TCCGAGCAATCGACACTTGA 59.399 50.000 1.45 0.00 34.64 3.02
385 387 0.994995 CTCCGAGCAATCGACACTTG 59.005 55.000 0.00 0.00 34.64 3.16
391 393 0.824109 ACCAATCTCCGAGCAATCGA 59.176 50.000 0.00 0.00 34.64 3.59
449 451 4.992381 AAGACAAAGACGAAATTCCTCG 57.008 40.909 0.00 0.00 44.50 4.63
461 463 2.967201 TCCCTCACCGTAAAGACAAAGA 59.033 45.455 0.00 0.00 0.00 2.52
506 508 9.962783 GTATCCTAGAACTACATTGTTTATCGT 57.037 33.333 0.00 0.00 0.00 3.73
516 518 9.823647 CAAAGACAATGTATCCTAGAACTACAT 57.176 33.333 0.00 0.00 37.62 2.29
702 704 3.855668 ACAATGATGACCCCCTCAAAAA 58.144 40.909 0.00 0.00 30.60 1.94
703 705 3.541242 ACAATGATGACCCCCTCAAAA 57.459 42.857 0.00 0.00 30.60 2.44
704 706 4.666412 TTACAATGATGACCCCCTCAAA 57.334 40.909 0.00 0.00 30.60 2.69
705 707 4.879295 ATTACAATGATGACCCCCTCAA 57.121 40.909 0.00 0.00 30.60 3.02
706 708 4.229353 TCAATTACAATGATGACCCCCTCA 59.771 41.667 0.00 0.00 0.00 3.86
707 709 4.792068 TCAATTACAATGATGACCCCCTC 58.208 43.478 0.00 0.00 0.00 4.30
708 710 4.879295 TCAATTACAATGATGACCCCCT 57.121 40.909 0.00 0.00 0.00 4.79
709 711 5.660460 GTTTCAATTACAATGATGACCCCC 58.340 41.667 0.00 0.00 0.00 5.40
710 712 5.124776 TCGTTTCAATTACAATGATGACCCC 59.875 40.000 0.00 0.00 0.00 4.95
711 713 6.093495 TCTCGTTTCAATTACAATGATGACCC 59.907 38.462 0.00 0.00 0.00 4.46
712 714 7.072177 TCTCGTTTCAATTACAATGATGACC 57.928 36.000 0.00 0.00 0.00 4.02
713 715 9.559958 AAATCTCGTTTCAATTACAATGATGAC 57.440 29.630 0.00 0.00 0.00 3.06
740 742 8.314751 TCATTTTCCTTGGTTTACTCACAAAAA 58.685 29.630 0.00 0.00 0.00 1.94
741 743 7.841956 TCATTTTCCTTGGTTTACTCACAAAA 58.158 30.769 0.00 0.00 0.00 2.44
742 744 7.123547 ACTCATTTTCCTTGGTTTACTCACAAA 59.876 33.333 0.00 0.00 0.00 2.83
743 745 6.605594 ACTCATTTTCCTTGGTTTACTCACAA 59.394 34.615 0.00 0.00 0.00 3.33
744 746 6.039270 CACTCATTTTCCTTGGTTTACTCACA 59.961 38.462 0.00 0.00 0.00 3.58
745 747 6.039382 ACACTCATTTTCCTTGGTTTACTCAC 59.961 38.462 0.00 0.00 0.00 3.51
746 748 6.126409 ACACTCATTTTCCTTGGTTTACTCA 58.874 36.000 0.00 0.00 0.00 3.41
747 749 6.565999 CGACACTCATTTTCCTTGGTTTACTC 60.566 42.308 0.00 0.00 0.00 2.59
748 750 5.238650 CGACACTCATTTTCCTTGGTTTACT 59.761 40.000 0.00 0.00 0.00 2.24
749 751 5.237779 TCGACACTCATTTTCCTTGGTTTAC 59.762 40.000 0.00 0.00 0.00 2.01
750 752 5.369833 TCGACACTCATTTTCCTTGGTTTA 58.630 37.500 0.00 0.00 0.00 2.01
751 753 4.204012 TCGACACTCATTTTCCTTGGTTT 58.796 39.130 0.00 0.00 0.00 3.27
752 754 3.815401 CTCGACACTCATTTTCCTTGGTT 59.185 43.478 0.00 0.00 0.00 3.67
753 755 3.403038 CTCGACACTCATTTTCCTTGGT 58.597 45.455 0.00 0.00 0.00 3.67
754 756 2.160417 GCTCGACACTCATTTTCCTTGG 59.840 50.000 0.00 0.00 0.00 3.61
755 757 2.807967 TGCTCGACACTCATTTTCCTTG 59.192 45.455 0.00 0.00 0.00 3.61
756 758 3.126001 TGCTCGACACTCATTTTCCTT 57.874 42.857 0.00 0.00 0.00 3.36
764 766 3.365264 GCAAAAATGATGCTCGACACTCA 60.365 43.478 0.00 0.00 40.64 3.41
840 842 4.792804 GACTCTGGCTGGCTGGGC 62.793 72.222 7.90 0.00 0.00 5.36
842 844 2.046507 GTGACTCTGGCTGGCTGG 60.047 66.667 8.19 2.37 0.00 4.85
843 845 1.375652 CAGTGACTCTGGCTGGCTG 60.376 63.158 2.00 1.75 40.23 4.85
844 846 3.067091 CAGTGACTCTGGCTGGCT 58.933 61.111 2.00 0.00 40.23 4.75
993 1034 3.567797 GCAGTCGCCATCGCCTTC 61.568 66.667 0.00 0.00 35.26 3.46
1085 1126 1.152008 GAGGGATAGTGGGAGGGGG 60.152 68.421 0.00 0.00 0.00 5.40
1086 1127 1.152008 GGAGGGATAGTGGGAGGGG 60.152 68.421 0.00 0.00 0.00 4.79
1087 1128 0.178918 GAGGAGGGATAGTGGGAGGG 60.179 65.000 0.00 0.00 0.00 4.30
1088 1129 0.863956 AGAGGAGGGATAGTGGGAGG 59.136 60.000 0.00 0.00 0.00 4.30
1089 1130 4.412060 AATAGAGGAGGGATAGTGGGAG 57.588 50.000 0.00 0.00 0.00 4.30
1090 1131 5.043281 GGATAATAGAGGAGGGATAGTGGGA 60.043 48.000 0.00 0.00 0.00 4.37
1091 1132 5.212745 GGATAATAGAGGAGGGATAGTGGG 58.787 50.000 0.00 0.00 0.00 4.61
1092 1133 4.890581 CGGATAATAGAGGAGGGATAGTGG 59.109 50.000 0.00 0.00 0.00 4.00
1093 1134 5.756918 TCGGATAATAGAGGAGGGATAGTG 58.243 45.833 0.00 0.00 0.00 2.74
1094 1135 6.599986 ATCGGATAATAGAGGAGGGATAGT 57.400 41.667 0.00 0.00 0.00 2.12
1095 1136 6.266558 CCAATCGGATAATAGAGGAGGGATAG 59.733 46.154 0.00 0.00 0.00 2.08
1096 1137 6.136857 CCAATCGGATAATAGAGGAGGGATA 58.863 44.000 0.00 0.00 0.00 2.59
1097 1138 4.965532 CCAATCGGATAATAGAGGAGGGAT 59.034 45.833 0.00 0.00 0.00 3.85
1098 1139 4.353777 CCAATCGGATAATAGAGGAGGGA 58.646 47.826 0.00 0.00 0.00 4.20
1099 1140 3.452627 CCCAATCGGATAATAGAGGAGGG 59.547 52.174 0.00 0.00 0.00 4.30
1100 1141 3.452627 CCCCAATCGGATAATAGAGGAGG 59.547 52.174 0.00 0.00 0.00 4.30
1101 1142 4.097418 ACCCCAATCGGATAATAGAGGAG 58.903 47.826 0.00 0.00 0.00 3.69
1102 1143 4.141990 ACCCCAATCGGATAATAGAGGA 57.858 45.455 0.00 0.00 0.00 3.71
1103 1144 4.910458 AACCCCAATCGGATAATAGAGG 57.090 45.455 0.00 0.00 0.00 3.69
1104 1145 5.865085 TCAAACCCCAATCGGATAATAGAG 58.135 41.667 0.00 0.00 0.00 2.43
1105 1146 5.897851 TCAAACCCCAATCGGATAATAGA 57.102 39.130 0.00 0.00 0.00 1.98
1106 1147 6.714810 TCATTCAAACCCCAATCGGATAATAG 59.285 38.462 0.00 0.00 0.00 1.73
1107 1148 6.606069 TCATTCAAACCCCAATCGGATAATA 58.394 36.000 0.00 0.00 0.00 0.98
1108 1149 5.454062 TCATTCAAACCCCAATCGGATAAT 58.546 37.500 0.00 0.00 0.00 1.28
1109 1150 4.861196 TCATTCAAACCCCAATCGGATAA 58.139 39.130 0.00 0.00 0.00 1.75
1110 1151 4.511786 TCATTCAAACCCCAATCGGATA 57.488 40.909 0.00 0.00 0.00 2.59
1111 1152 3.380471 TCATTCAAACCCCAATCGGAT 57.620 42.857 0.00 0.00 0.00 4.18
1112 1153 2.889170 TCATTCAAACCCCAATCGGA 57.111 45.000 0.00 0.00 0.00 4.55
1113 1154 2.481795 GCATCATTCAAACCCCAATCGG 60.482 50.000 0.00 0.00 0.00 4.18
1114 1155 2.795681 CGCATCATTCAAACCCCAATCG 60.796 50.000 0.00 0.00 0.00 3.34
1154 1432 3.126831 CAATCGAGATGGGCAGAAGTAC 58.873 50.000 0.00 0.00 0.00 2.73
1304 1582 1.612726 GCCATATCCACATCTGAGGGC 60.613 57.143 0.00 0.00 0.00 5.19
1440 1718 4.096382 GTCAACAAATTGTGTGTCAGTCCT 59.904 41.667 0.00 0.00 40.60 3.85
1441 1719 4.096382 AGTCAACAAATTGTGTGTCAGTCC 59.904 41.667 0.00 0.00 40.60 3.85
1448 1726 4.368874 TGGTCAGTCAACAAATTGTGTG 57.631 40.909 0.00 0.93 40.60 3.82
1461 1739 8.680903 AGTTCATGAATGATAAAATGGTCAGTC 58.319 33.333 12.12 0.00 39.25 3.51
1462 1740 8.464404 CAGTTCATGAATGATAAAATGGTCAGT 58.536 33.333 12.12 0.00 36.56 3.41
1463 1741 8.680001 TCAGTTCATGAATGATAAAATGGTCAG 58.320 33.333 12.12 0.00 36.56 3.51
1464 1742 8.461222 GTCAGTTCATGAATGATAAAATGGTCA 58.539 33.333 12.12 0.00 40.43 4.02
1465 1743 7.641411 CGTCAGTTCATGAATGATAAAATGGTC 59.359 37.037 12.12 0.00 40.43 4.02
1484 1762 4.697352 AGTTATCGGTGTAGTACGTCAGTT 59.303 41.667 0.00 0.00 0.00 3.16
1492 1770 7.928307 AACAGTCTAAGTTATCGGTGTAGTA 57.072 36.000 0.00 0.00 0.00 1.82
1493 1771 6.830873 AACAGTCTAAGTTATCGGTGTAGT 57.169 37.500 0.00 0.00 0.00 2.73
1521 1799 8.801715 ATCAAATTTTGTTACACTGTCATCAC 57.198 30.769 8.89 0.00 0.00 3.06
1650 1928 6.114187 TGTCCGATAATCCTTTATGAGCAT 57.886 37.500 0.00 0.00 0.00 3.79
1665 2868 3.881089 TCTCTAAGAACGCATGTCCGATA 59.119 43.478 0.00 0.00 0.00 2.92
1669 2872 3.232213 TGTCTCTAAGAACGCATGTCC 57.768 47.619 0.00 0.00 0.00 4.02
1670 2873 4.486090 TCTTGTCTCTAAGAACGCATGTC 58.514 43.478 0.00 0.00 33.96 3.06
1703 2906 9.434420 GATCAAGCTGCTAGTTCAGAAATATAT 57.566 33.333 0.90 0.00 36.19 0.86
1704 2907 8.424133 TGATCAAGCTGCTAGTTCAGAAATATA 58.576 33.333 0.90 0.00 36.19 0.86
1707 2910 5.494724 TGATCAAGCTGCTAGTTCAGAAAT 58.505 37.500 0.90 0.00 36.19 2.17
1719 2922 5.352016 TGCCAATTAAAAATGATCAAGCTGC 59.648 36.000 0.00 0.00 0.00 5.25
1745 2949 6.514947 AGATGAACAAACTAGCAATGCAAAA 58.485 32.000 8.35 0.00 0.00 2.44
1750 2954 7.130917 GCATAGAGATGAACAAACTAGCAATG 58.869 38.462 0.00 0.00 34.73 2.82
1757 2961 7.750229 TTTCTTGCATAGAGATGAACAAACT 57.250 32.000 0.00 0.00 34.73 2.66
1761 2965 7.308770 CCTGTTTTTCTTGCATAGAGATGAACA 60.309 37.037 11.75 11.75 34.73 3.18
1777 2981 5.751586 TGGTAGTCTGTTTCCTGTTTTTCT 58.248 37.500 0.00 0.00 0.00 2.52
1822 3026 9.764363 CATAAGCTATGTAGTATTTTCCTCACA 57.236 33.333 0.00 0.00 0.00 3.58
1835 3039 8.798859 AGGATTAAATGCCATAAGCTATGTAG 57.201 34.615 0.00 0.00 44.23 2.74
1842 3048 8.127150 AGGAAATAGGATTAAATGCCATAAGC 57.873 34.615 0.00 0.00 44.14 3.09
1860 3066 7.776618 TGAGACTCTAACTGACAAGGAAATA 57.223 36.000 3.68 0.00 0.00 1.40
1877 3083 9.914131 TGTAGCATACACATAATTATGAGACTC 57.086 33.333 28.13 13.66 46.14 3.36
1901 3107 6.092955 ACAAAAGATGAATGCAACTCATGT 57.907 33.333 16.92 11.49 35.13 3.21
1951 3168 2.722094 ACAGAAGTTGTTTCACTGCCA 58.278 42.857 0.00 0.00 36.31 4.92
2003 3220 3.136763 CAGCAAGACAGAACTCATGTGT 58.863 45.455 0.00 0.00 38.44 3.72
2007 3224 5.674052 ATCTACAGCAAGACAGAACTCAT 57.326 39.130 0.00 0.00 0.00 2.90
2010 3227 4.404073 CCCTATCTACAGCAAGACAGAACT 59.596 45.833 0.00 0.00 0.00 3.01
2014 3231 3.701542 TGTCCCTATCTACAGCAAGACAG 59.298 47.826 0.00 0.00 0.00 3.51
2053 3270 7.254117 CCACTCACGTAATTCTCATGTACATTC 60.254 40.741 5.37 0.00 0.00 2.67
2058 3275 4.081917 TGCCACTCACGTAATTCTCATGTA 60.082 41.667 0.00 0.00 0.00 2.29
2073 3290 2.527624 AGGAGCACCTGCCACTCA 60.528 61.111 0.22 0.00 45.92 3.41
2118 3335 0.809385 TTTCGTCACCCGCACAAAAA 59.191 45.000 0.00 0.00 36.19 1.94
2119 3336 0.809385 TTTTCGTCACCCGCACAAAA 59.191 45.000 0.00 0.00 36.19 2.44
2120 3337 0.809385 TTTTTCGTCACCCGCACAAA 59.191 45.000 0.00 0.00 36.19 2.83
2121 3338 0.378962 CTTTTTCGTCACCCGCACAA 59.621 50.000 0.00 0.00 36.19 3.33
2122 3339 0.462225 TCTTTTTCGTCACCCGCACA 60.462 50.000 0.00 0.00 36.19 4.57
2123 3340 0.658897 TTCTTTTTCGTCACCCGCAC 59.341 50.000 0.00 0.00 36.19 5.34
2124 3341 1.600023 ATTCTTTTTCGTCACCCGCA 58.400 45.000 0.00 0.00 36.19 5.69
2125 3342 2.159612 GGTATTCTTTTTCGTCACCCGC 60.160 50.000 0.00 0.00 36.19 6.13
2126 3343 3.068560 TGGTATTCTTTTTCGTCACCCG 58.931 45.455 0.00 0.00 38.13 5.28
2127 3344 4.070009 AGTGGTATTCTTTTTCGTCACCC 58.930 43.478 0.00 0.00 0.00 4.61
2130 3347 8.664798 CATATTGAGTGGTATTCTTTTTCGTCA 58.335 33.333 0.00 0.00 0.00 4.35
2145 3362 8.786826 TGGTAGTTAAGAAACATATTGAGTGG 57.213 34.615 0.00 0.00 38.12 4.00
2147 3364 8.322091 AGCTGGTAGTTAAGAAACATATTGAGT 58.678 33.333 0.00 0.00 38.12 3.41
2148 3365 8.723942 AGCTGGTAGTTAAGAAACATATTGAG 57.276 34.615 0.00 0.00 38.12 3.02
2149 3366 9.515226 AAAGCTGGTAGTTAAGAAACATATTGA 57.485 29.630 0.00 0.00 38.12 2.57
2220 3437 4.702831 TGTTTCGGCATATAGATGAGCAA 58.297 39.130 0.39 0.00 34.73 3.91
2233 3450 2.030363 CAGGCTATGTTTTGTTTCGGCA 60.030 45.455 0.00 0.00 0.00 5.69
2236 3453 3.281341 TGCAGGCTATGTTTTGTTTCG 57.719 42.857 0.00 0.00 0.00 3.46
2242 3459 1.613437 ACGCTTTGCAGGCTATGTTTT 59.387 42.857 11.04 0.00 0.00 2.43
2244 3461 1.247567 AACGCTTTGCAGGCTATGTT 58.752 45.000 11.04 6.10 0.00 2.71
2246 3463 1.199789 TGAAACGCTTTGCAGGCTATG 59.800 47.619 11.04 0.47 0.00 2.23
2247 3464 1.533625 TGAAACGCTTTGCAGGCTAT 58.466 45.000 11.04 0.00 0.00 2.97
2253 3470 3.361794 TTTAGCATGAAACGCTTTGCA 57.638 38.095 0.00 0.00 40.96 4.08
2285 3502 6.016276 AGCAAAAAGGGTTACAGTGTCATAAG 60.016 38.462 0.00 0.00 0.00 1.73
2336 3553 4.924305 ACAGTCAGCACAAATCAAACAT 57.076 36.364 0.00 0.00 0.00 2.71
2348 3565 3.483808 TGTCCATGTTAACAGTCAGCA 57.516 42.857 14.65 6.52 0.00 4.41
2354 3571 9.010029 ACCTTTATTACTTGTCCATGTTAACAG 57.990 33.333 14.65 6.30 0.00 3.16
2376 3593 7.361457 TGATCACCTAAATTCTATCGACCTT 57.639 36.000 0.00 0.00 0.00 3.50
2377 3594 6.978674 TGATCACCTAAATTCTATCGACCT 57.021 37.500 0.00 0.00 0.00 3.85
2381 3598 8.654215 CACATGATGATCACCTAAATTCTATCG 58.346 37.037 0.00 0.00 0.00 2.92
2385 3602 6.485984 GCTCACATGATGATCACCTAAATTCT 59.514 38.462 0.00 0.00 36.48 2.40
2437 3654 3.033659 ACTAGTCTCCCAGGTGTATGG 57.966 52.381 0.00 0.00 40.29 2.74
2445 3662 5.886474 TCATGTAACAGTACTAGTCTCCCAG 59.114 44.000 0.00 0.00 0.00 4.45
2459 3676 5.734720 AGGGTGAACAGTATCATGTAACAG 58.265 41.667 0.00 0.00 31.70 3.16
2463 3680 6.072175 GCAAAAAGGGTGAACAGTATCATGTA 60.072 38.462 0.00 0.00 31.70 2.29
2469 3686 4.469657 TGAGCAAAAAGGGTGAACAGTAT 58.530 39.130 0.00 0.00 0.00 2.12
2474 3691 2.627699 TGGATGAGCAAAAAGGGTGAAC 59.372 45.455 0.00 0.00 0.00 3.18
2477 3694 2.564062 ACATGGATGAGCAAAAAGGGTG 59.436 45.455 0.00 0.00 0.00 4.61
2499 3716 4.225042 TCAAGCAGCCTACCAAGAATTAGA 59.775 41.667 0.00 0.00 0.00 2.10
2594 3811 4.910195 TGTGTGATGGTTCTTTATGAGCT 58.090 39.130 0.00 0.00 0.00 4.09
2610 3827 1.899814 GTCTCCCAGGTGTATGTGTGA 59.100 52.381 0.00 0.00 0.00 3.58
2622 3839 3.687125 TGTCACAGTACTAGTCTCCCAG 58.313 50.000 0.00 0.00 0.00 4.45
2624 3841 4.270834 TCATGTCACAGTACTAGTCTCCC 58.729 47.826 0.00 0.00 0.00 4.30
2625 3842 6.768861 AGTATCATGTCACAGTACTAGTCTCC 59.231 42.308 0.00 0.00 0.00 3.71
2636 3853 5.734720 AGGGTTAACAGTATCATGTCACAG 58.265 41.667 8.10 0.00 31.50 3.66
2645 3862 6.569179 TGAGCAAAAAGGGTTAACAGTATC 57.431 37.500 8.10 0.00 0.00 2.24
2653 3870 4.415596 ACATGGATGAGCAAAAAGGGTTA 58.584 39.130 0.00 0.00 0.00 2.85
2655 3872 2.827921 GACATGGATGAGCAAAAAGGGT 59.172 45.455 0.00 0.00 0.00 4.34
2658 3875 5.902613 TTAGGACATGGATGAGCAAAAAG 57.097 39.130 0.00 0.00 0.00 2.27
2663 3880 5.128205 CAAGAATTAGGACATGGATGAGCA 58.872 41.667 0.00 0.00 0.00 4.26
2666 3883 5.715439 ACCAAGAATTAGGACATGGATGA 57.285 39.130 0.00 0.00 0.00 2.92
2667 3884 6.000219 CCTACCAAGAATTAGGACATGGATG 59.000 44.000 0.00 0.00 37.64 3.51
2668 3885 5.456763 GCCTACCAAGAATTAGGACATGGAT 60.457 44.000 0.00 0.00 37.64 3.41
2669 3886 4.141482 GCCTACCAAGAATTAGGACATGGA 60.141 45.833 0.00 0.00 37.64 3.41
2750 3967 5.847670 CATCTATGACACATGATGCTCAG 57.152 43.478 0.00 0.00 31.51 3.35
2764 3981 7.658982 GTGATGGTTCTTTATGAGCATCTATGA 59.341 37.037 14.24 0.00 45.93 2.15
2783 4017 5.717178 AGTCTCTAAGTGTATGTGTGATGGT 59.283 40.000 0.00 0.00 0.00 3.55
2801 4035 4.521256 GCCAGAATCCGACTATTAGTCTCT 59.479 45.833 19.05 12.88 42.92 3.10
2806 4040 4.887748 ACATGCCAGAATCCGACTATTAG 58.112 43.478 0.00 0.00 0.00 1.73
2809 4043 2.700371 TGACATGCCAGAATCCGACTAT 59.300 45.455 0.00 0.00 0.00 2.12
2814 4048 1.957668 TGATGACATGCCAGAATCCG 58.042 50.000 0.00 0.00 0.00 4.18
2827 4061 3.864789 ACCCTGGTGGATATTGATGAC 57.135 47.619 0.00 0.00 38.00 3.06
2846 4080 7.224557 ACAAATAGAAATCACAAGCACCAAAAC 59.775 33.333 0.00 0.00 0.00 2.43
2857 4091 7.229306 AGCACAGAAGAACAAATAGAAATCACA 59.771 33.333 0.00 0.00 0.00 3.58
2858 4092 7.588512 AGCACAGAAGAACAAATAGAAATCAC 58.411 34.615 0.00 0.00 0.00 3.06
2861 4095 9.899226 GTAAAGCACAGAAGAACAAATAGAAAT 57.101 29.630 0.00 0.00 0.00 2.17
2867 4101 7.308435 GCTATGTAAAGCACAGAAGAACAAAT 58.692 34.615 0.00 0.00 41.51 2.32
2874 4108 4.764172 AGAGGCTATGTAAAGCACAGAAG 58.236 43.478 0.00 0.00 44.64 2.85
2876 4110 4.826274 AAGAGGCTATGTAAAGCACAGA 57.174 40.909 0.00 0.00 44.64 3.41
2877 4111 7.559590 AAATAAGAGGCTATGTAAAGCACAG 57.440 36.000 0.00 0.00 44.64 3.66
2931 4165 5.051106 AGCAACGAAAATCCAAAACAAATCG 60.051 36.000 0.00 0.00 35.36 3.34
2945 4179 4.901868 AGGAATACTGGTAGCAACGAAAA 58.098 39.130 0.00 0.00 0.00 2.29
2948 4182 3.767673 AGAAGGAATACTGGTAGCAACGA 59.232 43.478 0.00 0.00 0.00 3.85
2949 4183 3.865745 CAGAAGGAATACTGGTAGCAACG 59.134 47.826 0.00 0.00 0.00 4.10
2950 4184 4.833390 ACAGAAGGAATACTGGTAGCAAC 58.167 43.478 0.00 0.00 38.30 4.17
2956 4190 6.952358 TCAGTTAGTACAGAAGGAATACTGGT 59.048 38.462 0.00 0.00 38.30 4.00
2957 4191 7.093902 TGTCAGTTAGTACAGAAGGAATACTGG 60.094 40.741 0.00 0.00 38.30 4.00
2958 4192 7.827701 TGTCAGTTAGTACAGAAGGAATACTG 58.172 38.462 0.00 0.00 39.65 2.74
2976 4210 0.392706 TCGTGTCCAGCATGTCAGTT 59.607 50.000 0.00 0.00 35.64 3.16
2977 4211 0.319900 GTCGTGTCCAGCATGTCAGT 60.320 55.000 0.00 0.00 35.64 3.41
2978 4212 0.037882 AGTCGTGTCCAGCATGTCAG 60.038 55.000 0.00 0.00 35.64 3.51
2979 4213 0.392706 AAGTCGTGTCCAGCATGTCA 59.607 50.000 0.00 0.00 35.64 3.58
2980 4214 1.512926 AAAGTCGTGTCCAGCATGTC 58.487 50.000 0.00 0.00 35.64 3.06
2981 4215 1.603802 CAAAAGTCGTGTCCAGCATGT 59.396 47.619 0.00 0.00 35.64 3.21
2982 4216 1.603802 ACAAAAGTCGTGTCCAGCATG 59.396 47.619 0.00 0.00 35.47 4.06
2984 4218 1.134521 AGACAAAAGTCGTGTCCAGCA 60.135 47.619 1.08 0.00 45.39 4.41
3035 4272 8.139989 GCCAAGAATTCTGCATTAGTATCATTT 58.860 33.333 9.17 0.00 0.00 2.32
3038 4275 6.121590 TGCCAAGAATTCTGCATTAGTATCA 58.878 36.000 14.64 0.00 29.01 2.15
3047 4284 2.428171 GCCTTATGCCAAGAATTCTGCA 59.572 45.455 19.36 19.36 37.31 4.41
3069 4306 7.147320 TGTTTATAATGATCCATGAGGTCCACT 60.147 37.037 0.00 0.00 35.89 4.00
3070 4307 6.998074 TGTTTATAATGATCCATGAGGTCCAC 59.002 38.462 0.00 0.00 35.89 4.02
3075 4312 9.650539 CTAGAGTGTTTATAATGATCCATGAGG 57.349 37.037 0.00 0.00 0.00 3.86
3110 4348 2.823924 TTTTCATGCTGCATTGCTGT 57.176 40.000 13.38 0.00 0.00 4.40
3119 4357 5.765176 TCAGTTCTTCACATTTTCATGCTG 58.235 37.500 0.00 0.00 33.05 4.41
3122 4360 8.537223 CAAACTTCAGTTCTTCACATTTTCATG 58.463 33.333 0.00 0.00 37.25 3.07
3133 4371 3.378427 ACCACAGCAAACTTCAGTTCTTC 59.622 43.478 0.00 0.00 37.25 2.87
3139 4377 4.900635 AAACTACCACAGCAAACTTCAG 57.099 40.909 0.00 0.00 0.00 3.02
3160 4398 3.450904 ACTAACATGCCCAGTTCTCCTA 58.549 45.455 0.00 0.00 0.00 2.94
3161 4399 2.269940 ACTAACATGCCCAGTTCTCCT 58.730 47.619 0.00 0.00 0.00 3.69
3162 4400 2.749621 CAACTAACATGCCCAGTTCTCC 59.250 50.000 0.00 0.00 30.20 3.71
3163 4401 3.189287 CACAACTAACATGCCCAGTTCTC 59.811 47.826 0.00 0.00 30.20 2.87
3164 4402 3.149196 CACAACTAACATGCCCAGTTCT 58.851 45.455 0.00 0.00 30.20 3.01
3165 4403 2.228822 CCACAACTAACATGCCCAGTTC 59.771 50.000 0.00 0.00 30.20 3.01
3166 4404 2.238521 CCACAACTAACATGCCCAGTT 58.761 47.619 0.00 0.00 32.82 3.16
3167 4405 1.547675 CCCACAACTAACATGCCCAGT 60.548 52.381 0.00 0.00 0.00 4.00
3168 4406 1.176527 CCCACAACTAACATGCCCAG 58.823 55.000 0.00 0.00 0.00 4.45
3169 4407 0.251564 CCCCACAACTAACATGCCCA 60.252 55.000 0.00 0.00 0.00 5.36
3170 4408 0.039035 TCCCCACAACTAACATGCCC 59.961 55.000 0.00 0.00 0.00 5.36
3171 4409 2.143876 ATCCCCACAACTAACATGCC 57.856 50.000 0.00 0.00 0.00 4.40
3172 4410 3.088532 TCAATCCCCACAACTAACATGC 58.911 45.455 0.00 0.00 0.00 4.06
3173 4411 5.418524 TCATTCAATCCCCACAACTAACATG 59.581 40.000 0.00 0.00 0.00 3.21
3174 4412 5.579047 TCATTCAATCCCCACAACTAACAT 58.421 37.500 0.00 0.00 0.00 2.71
3199 4437 5.305585 AGAGATGTAAAAAGGAGTTCGCAA 58.694 37.500 0.00 0.00 0.00 4.85
3202 4440 9.974750 GAATTTAGAGATGTAAAAAGGAGTTCG 57.025 33.333 0.00 0.00 0.00 3.95
3203 4441 9.974750 CGAATTTAGAGATGTAAAAAGGAGTTC 57.025 33.333 0.00 0.00 0.00 3.01
3209 4447 9.430838 CATGAGCGAATTTAGAGATGTAAAAAG 57.569 33.333 0.00 0.00 0.00 2.27
3213 4451 6.530913 GCATGAGCGAATTTAGAGATGTAA 57.469 37.500 0.00 0.00 0.00 2.41
3231 4469 3.354948 ACAGGTAATCAGCAAGCATGA 57.645 42.857 0.00 0.00 0.00 3.07
3232 4470 3.693085 AGAACAGGTAATCAGCAAGCATG 59.307 43.478 0.00 0.00 0.00 4.06
3233 4471 3.960571 AGAACAGGTAATCAGCAAGCAT 58.039 40.909 0.00 0.00 0.00 3.79
3234 4472 3.423539 AGAACAGGTAATCAGCAAGCA 57.576 42.857 0.00 0.00 0.00 3.91
3235 4473 4.022849 ACAAAGAACAGGTAATCAGCAAGC 60.023 41.667 0.00 0.00 0.00 4.01
3236 4474 5.009010 ACACAAAGAACAGGTAATCAGCAAG 59.991 40.000 0.00 0.00 0.00 4.01
3237 4475 4.887071 ACACAAAGAACAGGTAATCAGCAA 59.113 37.500 0.00 0.00 0.00 3.91
3238 4476 4.275689 CACACAAAGAACAGGTAATCAGCA 59.724 41.667 0.00 0.00 0.00 4.41
3239 4477 4.275936 ACACACAAAGAACAGGTAATCAGC 59.724 41.667 0.00 0.00 0.00 4.26
3240 4478 6.481976 TGTACACACAAAGAACAGGTAATCAG 59.518 38.462 0.00 0.00 0.00 2.90
3241 4479 6.350103 TGTACACACAAAGAACAGGTAATCA 58.650 36.000 0.00 0.00 0.00 2.57
3242 4480 6.854496 TGTACACACAAAGAACAGGTAATC 57.146 37.500 0.00 0.00 0.00 1.75
3243 4481 6.995686 TGATGTACACACAAAGAACAGGTAAT 59.004 34.615 0.00 0.00 38.42 1.89
3244 4482 6.350103 TGATGTACACACAAAGAACAGGTAA 58.650 36.000 0.00 0.00 38.42 2.85
3245 4483 5.919755 TGATGTACACACAAAGAACAGGTA 58.080 37.500 0.00 0.00 38.42 3.08
3246 4484 4.776349 TGATGTACACACAAAGAACAGGT 58.224 39.130 0.00 0.00 38.42 4.00
3247 4485 4.319766 GCTGATGTACACACAAAGAACAGG 60.320 45.833 0.00 0.00 38.42 4.00
3248 4486 4.512944 AGCTGATGTACACACAAAGAACAG 59.487 41.667 0.00 0.00 38.42 3.16
3249 4487 4.450976 AGCTGATGTACACACAAAGAACA 58.549 39.130 0.00 0.00 38.42 3.18
3250 4488 5.007626 TGAAGCTGATGTACACACAAAGAAC 59.992 40.000 0.00 0.00 38.42 3.01
3263 4521 2.350522 GAATCCACGTGAAGCTGATGT 58.649 47.619 19.30 2.17 0.00 3.06
3403 4661 2.982130 CTTACGGCTCCCAGCACT 59.018 61.111 0.00 0.00 44.75 4.40
3452 4710 3.504375 AGGCTTTCTTTTGCTGGAAGAT 58.496 40.909 0.00 0.00 34.07 2.40
3645 4909 8.726988 GTTCAAGCCACTTGTATTATTAACAGA 58.273 33.333 7.18 0.00 41.66 3.41
3711 4975 1.600413 GCCAAGAGGAACGCAAACAAG 60.600 52.381 0.00 0.00 36.89 3.16
3802 5066 5.384063 TTTGAGCAATTTTCGCCAGATTA 57.616 34.783 0.00 0.00 0.00 1.75
3803 5067 3.940209 TTGAGCAATTTTCGCCAGATT 57.060 38.095 0.00 0.00 0.00 2.40
3933 5205 2.993899 CAAGTACCAAGCCGAAGTACAG 59.006 50.000 0.00 0.00 39.04 2.74
3936 5208 3.656559 GAACAAGTACCAAGCCGAAGTA 58.343 45.455 0.00 0.00 0.00 2.24
4018 5295 7.708998 TGTTTTACCTCACTTACCAATTGAAC 58.291 34.615 7.12 0.00 0.00 3.18
4053 5330 6.872547 GCAGGCTTAGTATAACTGTAATACCC 59.127 42.308 0.00 0.00 31.41 3.69
4057 5334 5.539048 CCGCAGGCTTAGTATAACTGTAAT 58.461 41.667 0.00 0.00 46.14 1.89
4058 5335 4.940463 CCGCAGGCTTAGTATAACTGTAA 58.060 43.478 0.00 0.00 46.14 2.41
4059 5336 4.579454 CCGCAGGCTTAGTATAACTGTA 57.421 45.455 0.00 0.00 46.14 2.74
4060 5337 3.454371 CCGCAGGCTTAGTATAACTGT 57.546 47.619 0.00 0.00 46.14 3.55
4080 5357 5.129320 ACTCCCTCCAATCCAAATTAATTGC 59.871 40.000 0.39 0.00 37.73 3.56
4088 5365 4.111577 ACATCTACTCCCTCCAATCCAAA 58.888 43.478 0.00 0.00 0.00 3.28
4112 5389 2.050168 CGCTGCAACGCCAAATGT 60.050 55.556 0.00 0.00 0.00 2.71
4228 5510 5.456763 CCCCTTCTTCTTCTGAAAAAGAGGA 60.457 44.000 14.90 2.11 39.14 3.71
4268 5550 2.625883 GGAAGAAGGGGTTTATTGGGGG 60.626 54.545 0.00 0.00 0.00 5.40
4300 5582 3.050275 GCCCACGGAACTGTCTGC 61.050 66.667 0.00 0.00 32.86 4.26
4329 5611 2.580601 CGTCTGAACGGGAAGGGGT 61.581 63.158 0.00 0.00 45.21 4.95
4585 5879 1.756950 TAGCAGCAGTACCTCGGGG 60.757 63.158 0.00 0.00 38.88 5.73
4608 5902 1.132817 AGGGTCAGTTAGGTGTGAGGT 60.133 52.381 0.00 0.00 0.00 3.85
4618 5912 5.011329 CAGTGGTAAGTAACAGGGTCAGTTA 59.989 44.000 0.00 0.00 0.00 2.24
4619 5913 3.971971 AGTGGTAAGTAACAGGGTCAGTT 59.028 43.478 0.00 0.00 0.00 3.16
4620 5914 3.323979 CAGTGGTAAGTAACAGGGTCAGT 59.676 47.826 0.00 0.00 0.00 3.41
4621 5915 3.864921 GCAGTGGTAAGTAACAGGGTCAG 60.865 52.174 0.00 0.00 0.00 3.51
4623 5917 2.302157 AGCAGTGGTAAGTAACAGGGTC 59.698 50.000 0.00 0.00 0.00 4.46
4624 5918 2.302157 GAGCAGTGGTAAGTAACAGGGT 59.698 50.000 0.00 0.00 0.00 4.34
4625 5919 2.354805 GGAGCAGTGGTAAGTAACAGGG 60.355 54.545 0.00 0.00 0.00 4.45
4626 5920 2.354805 GGGAGCAGTGGTAAGTAACAGG 60.355 54.545 0.00 0.00 0.00 4.00
4627 5921 2.674177 CGGGAGCAGTGGTAAGTAACAG 60.674 54.545 0.00 0.00 0.00 3.16
4628 5922 1.274167 CGGGAGCAGTGGTAAGTAACA 59.726 52.381 0.00 0.00 0.00 2.41
4629 5923 1.547372 TCGGGAGCAGTGGTAAGTAAC 59.453 52.381 0.00 0.00 0.00 2.50
4630 5924 1.822990 CTCGGGAGCAGTGGTAAGTAA 59.177 52.381 0.00 0.00 0.00 2.24
4631 5925 1.005097 TCTCGGGAGCAGTGGTAAGTA 59.995 52.381 0.00 0.00 0.00 2.24
4632 5926 0.251653 TCTCGGGAGCAGTGGTAAGT 60.252 55.000 0.00 0.00 0.00 2.24
4633 5927 0.457851 CTCTCGGGAGCAGTGGTAAG 59.542 60.000 0.00 0.00 32.43 2.34
4634 5928 0.970937 CCTCTCGGGAGCAGTGGTAA 60.971 60.000 6.84 0.00 38.21 2.85
4637 5931 2.681778 ACCTCTCGGGAGCAGTGG 60.682 66.667 6.84 0.00 38.21 4.00
4642 5936 1.142748 CATCACACCTCTCGGGAGC 59.857 63.158 6.84 0.00 38.21 4.70
4643 5937 1.142748 GCATCACACCTCTCGGGAG 59.857 63.158 4.93 4.93 38.76 4.30
4653 5947 3.542712 ACAACTCAATTCGCATCACAC 57.457 42.857 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.