Multiple sequence alignment - TraesCS2A01G303900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G303900 chr2A 100.000 5583 0 0 894 6476 522072400 522077982 0.000000e+00 10310
1 TraesCS2A01G303900 chr2A 100.000 534 0 0 1 534 522071507 522072040 0.000000e+00 987
2 TraesCS2A01G303900 chr2A 96.386 332 11 1 4275 4605 778156852 778157183 4.420000e-151 545
3 TraesCS2A01G303900 chr2A 94.169 343 20 0 4273 4615 27650737 27651079 2.070000e-144 523
4 TraesCS2A01G303900 chr2D 95.511 3408 113 21 894 4275 386248544 386251937 0.000000e+00 5409
5 TraesCS2A01G303900 chr2D 96.842 1235 27 7 4614 5846 386251937 386253161 0.000000e+00 2054
6 TraesCS2A01G303900 chr2D 96.203 553 13 2 5925 6476 386253158 386253703 0.000000e+00 898
7 TraesCS2A01G303900 chr2D 92.393 539 24 9 1 534 386248023 386248549 0.000000e+00 752
8 TraesCS2A01G303900 chr2B 94.491 2287 81 29 894 3166 457108995 457111250 0.000000e+00 3483
9 TraesCS2A01G303900 chr2B 96.777 1179 28 8 4614 5790 457112516 457113686 0.000000e+00 1958
10 TraesCS2A01G303900 chr2B 97.109 1003 25 3 3152 4154 457111270 457112268 0.000000e+00 1688
11 TraesCS2A01G303900 chr2B 93.738 543 20 7 1 534 457108463 457109000 0.000000e+00 802
12 TraesCS2A01G303900 chr2B 95.017 301 13 2 6178 6476 457114070 457114370 7.600000e-129 472
13 TraesCS2A01G303900 chr2B 95.455 220 10 0 5960 6179 457113757 457113976 1.030000e-92 351
14 TraesCS2A01G303900 chr2B 90.291 103 7 3 5840 5940 1095163 1095264 1.470000e-26 132
15 TraesCS2A01G303900 chr7D 95.783 332 14 0 4275 4606 548476245 548476576 2.660000e-148 536
16 TraesCS2A01G303900 chr1A 95.509 334 14 1 4274 4606 54297598 54297931 3.440000e-147 532
17 TraesCS2A01G303900 chr1A 85.849 106 13 2 1237 1341 540201709 540201813 1.910000e-20 111
18 TraesCS2A01G303900 chr7A 94.477 344 19 0 4275 4618 521211020 521210677 1.240000e-146 531
19 TraesCS2A01G303900 chr5D 95.468 331 15 0 4274 4604 35154845 35155175 4.450000e-146 529
20 TraesCS2A01G303900 chr3A 94.643 336 18 0 4275 4610 393485757 393486092 7.440000e-144 521
21 TraesCS2A01G303900 chr3A 85.981 107 11 3 1237 1341 14278170 14278274 1.910000e-20 111
22 TraesCS2A01G303900 chr7B 94.135 341 20 0 4273 4613 688563292 688562952 2.680000e-143 520
23 TraesCS2A01G303900 chr7B 89.320 103 8 3 5840 5940 111614225 111614326 6.820000e-25 126
24 TraesCS2A01G303900 chr4A 94.135 341 18 2 4272 4612 7128774 7129112 9.630000e-143 518
25 TraesCS2A01G303900 chr4A 85.606 132 17 2 992 1122 9048282 9048152 3.150000e-28 137
26 TraesCS2A01G303900 chr4A 87.356 87 10 1 1255 1341 9052305 9052220 1.490000e-16 99
27 TraesCS2A01G303900 chr4B 91.262 103 6 3 5840 5940 42350097 42350198 3.150000e-28 137
28 TraesCS2A01G303900 chr4B 90.291 103 7 3 5840 5940 116797037 116796936 1.470000e-26 132
29 TraesCS2A01G303900 chr4B 90.291 103 7 3 5840 5940 421804326 421804427 1.470000e-26 132
30 TraesCS2A01G303900 chr6B 90.291 103 7 3 5840 5940 655975923 655975822 1.470000e-26 132
31 TraesCS2A01G303900 chr5B 90.291 103 7 3 5840 5940 440363299 440363198 1.470000e-26 132
32 TraesCS2A01G303900 chr1B 89.320 103 8 3 5840 5940 77891474 77891575 6.820000e-25 126
33 TraesCS2A01G303900 chr1B 89.320 103 8 3 5840 5940 275406348 275406449 6.820000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G303900 chr2A 522071507 522077982 6475 False 5648.50 10310 100.000000 1 6476 2 chr2A.!!$F3 6475
1 TraesCS2A01G303900 chr2D 386248023 386253703 5680 False 2278.25 5409 95.237250 1 6476 4 chr2D.!!$F1 6475
2 TraesCS2A01G303900 chr2B 457108463 457114370 5907 False 1459.00 3483 95.431167 1 6476 6 chr2B.!!$F2 6475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 260 0.250901 ATGCACACAAGGACCTCACC 60.251 55.0 0.00 0.0 0.00 4.02 F
298 307 0.743345 AACGACAATTAGCTCCCGGC 60.743 55.0 0.00 0.0 42.19 6.13 F
2206 2255 0.036858 GGCAAGGTCAGTCAGTCTCC 60.037 60.0 0.00 0.0 0.00 3.71 F
2208 2257 0.244994 CAAGGTCAGTCAGTCTCCGG 59.755 60.0 0.00 0.0 0.00 5.14 F
3805 3901 0.375454 TTGGTCGTGTTTGCTTGTCG 59.625 50.0 0.00 0.0 0.00 4.35 F
4482 4741 0.251564 CCAATGGCAGTGGTGGGTAA 60.252 55.0 25.07 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1593 0.673333 ATCAGTTGCACGAATCGGCA 60.673 50.000 13.19 13.19 38.46 5.69 R
2208 2257 0.748005 ACGGCAGAGAGAGAGAGAGC 60.748 60.000 0.00 0.00 0.00 4.09 R
3788 3884 0.653636 TTCGACAAGCAAACACGACC 59.346 50.000 0.00 0.00 32.89 4.79 R
4054 4150 2.238521 GGTTCCACAAAGGCAATCAGA 58.761 47.619 0.00 0.00 37.29 3.27 R
4899 5158 0.662619 GCTGCTTAGCACACACACAA 59.337 50.000 1.39 0.00 33.79 3.33 R
6332 6697 0.107456 CGCTGGAGAATACCATGGCT 59.893 55.000 13.04 0.00 39.34 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 167 5.929697 AAAAATAAAAGAGCAAGCAAGGC 57.070 34.783 0.00 0.00 0.00 4.35
161 168 4.605640 AAATAAAAGAGCAAGCAAGGCA 57.394 36.364 0.00 0.00 0.00 4.75
252 260 0.250901 ATGCACACAAGGACCTCACC 60.251 55.000 0.00 0.00 0.00 4.02
259 267 1.002087 ACAAGGACCTCACCGTCAATC 59.998 52.381 0.00 0.00 34.24 2.67
261 269 1.573108 AGGACCTCACCGTCAATCAT 58.427 50.000 0.00 0.00 34.24 2.45
291 299 4.226761 CAAAGGTCCAAACGACAATTAGC 58.773 43.478 0.00 0.00 43.95 3.09
293 301 3.335579 AGGTCCAAACGACAATTAGCTC 58.664 45.455 0.00 0.00 43.95 4.09
298 307 0.743345 AACGACAATTAGCTCCCGGC 60.743 55.000 0.00 0.00 42.19 6.13
323 332 2.642427 ACAAATCATGAGCACGCCATA 58.358 42.857 0.09 0.00 0.00 2.74
422 434 7.636326 CAGTGGTATTAATTAATCGAACCCAC 58.364 38.462 19.30 20.57 0.00 4.61
497 509 2.139382 GAATCATCCTTCCTTCCCCCT 58.861 52.381 0.00 0.00 0.00 4.79
498 510 1.826447 ATCATCCTTCCTTCCCCCTC 58.174 55.000 0.00 0.00 0.00 4.30
960 972 4.256180 GCCTCCGGCCCGATCAAT 62.256 66.667 3.71 0.00 44.06 2.57
1171 1183 2.190578 GGGCTCCCCTGTGATTCG 59.809 66.667 0.00 0.00 41.34 3.34
1177 1189 2.656069 CCCCTGTGATTCGTCCCGT 61.656 63.158 0.00 0.00 0.00 5.28
1178 1190 1.447838 CCCTGTGATTCGTCCCGTG 60.448 63.158 0.00 0.00 0.00 4.94
1179 1191 2.100631 CCTGTGATTCGTCCCGTGC 61.101 63.158 0.00 0.00 0.00 5.34
1220 1250 1.453155 TTCCTTCCTGCTGCGAATTC 58.547 50.000 0.00 0.00 0.00 2.17
1253 1283 1.679153 GTCCTTTTGGGCGTTTCTTGA 59.321 47.619 0.00 0.00 40.87 3.02
1563 1593 1.969589 GCCCGTGTCCATTTTCGGT 60.970 57.895 0.00 0.00 41.17 4.69
1579 1609 2.325082 GGTGCCGATTCGTGCAACT 61.325 57.895 22.20 0.00 37.61 3.16
1582 1612 0.673333 TGCCGATTCGTGCAACTGAT 60.673 50.000 16.37 0.00 32.32 2.90
1586 1616 1.061131 CGATTCGTGCAACTGATGGTC 59.939 52.381 0.00 0.00 31.75 4.02
1589 1619 2.870372 GTGCAACTGATGGTCGCC 59.130 61.111 0.00 0.00 0.00 5.54
1778 1810 0.607620 AGCTGGAGAACACTCTGCTC 59.392 55.000 0.00 0.00 40.55 4.26
1784 1816 1.173444 AGAACACTCTGCTCGACGGT 61.173 55.000 0.00 0.00 0.00 4.83
1836 1868 6.252228 CGACTTCGGTTACTCAAAGGTAATAC 59.748 42.308 0.00 0.00 34.73 1.89
1981 2015 0.670546 TTTCCTCTTCCTGCGCGAAG 60.671 55.000 12.10 9.54 40.59 3.79
2021 2055 2.342650 CCCTGCCATTGTTGACCCG 61.343 63.158 0.00 0.00 0.00 5.28
2206 2255 0.036858 GGCAAGGTCAGTCAGTCTCC 60.037 60.000 0.00 0.00 0.00 3.71
2207 2256 0.389166 GCAAGGTCAGTCAGTCTCCG 60.389 60.000 0.00 0.00 0.00 4.63
2208 2257 0.244994 CAAGGTCAGTCAGTCTCCGG 59.755 60.000 0.00 0.00 0.00 5.14
2222 2271 0.469917 CTCCGGCTCTCTCTCTCTCT 59.530 60.000 0.00 0.00 0.00 3.10
2424 2473 2.584608 GACTGGGTCCATGGGTCG 59.415 66.667 13.02 0.00 0.00 4.79
2431 2480 4.386951 TCCATGGGTCGCACCACG 62.387 66.667 13.02 0.00 44.72 4.94
2631 2689 2.861462 AGATAGTGTCTCTCGCTTGC 57.139 50.000 0.00 0.00 38.01 4.01
2709 2769 3.220999 TTGTCGTGGCAGTCCTCCG 62.221 63.158 0.00 0.00 0.00 4.63
2803 2863 8.554528 AGAGATTATGCAAAGATATGTTGTTCG 58.445 33.333 0.00 0.00 0.00 3.95
3026 3086 3.026630 TCGCGAGAACATCAAGAGTTT 57.973 42.857 3.71 0.00 37.03 2.66
3322 3417 1.476007 ATGCCCAGACGGAGATAGGC 61.476 60.000 0.00 0.00 40.87 3.93
3403 3498 5.688823 CACATCAGCTTGACAAATCGTTTA 58.311 37.500 0.00 0.00 0.00 2.01
3559 3655 6.294176 GCTAATTGATGTTGTCACAAAGGTCT 60.294 38.462 0.00 0.00 36.32 3.85
3612 3708 1.412710 AGACTGAACTTCTCGTTGGCA 59.587 47.619 0.00 0.00 35.56 4.92
3752 3848 6.475504 TCACTGTCCAACAAATCATATCAGT 58.524 36.000 0.00 0.00 34.62 3.41
3788 3884 1.458064 CTTTCCAGCGCTGCAAAATTG 59.542 47.619 31.96 14.15 0.00 2.32
3805 3901 0.375454 TTGGTCGTGTTTGCTTGTCG 59.625 50.000 0.00 0.00 0.00 4.35
3866 3962 7.838696 AGATAGTCTATGGATAGCATAGCAACT 59.161 37.037 0.00 0.00 33.79 3.16
3986 4082 6.956299 AAATATGTGCATTTTGTCTGCTTC 57.044 33.333 0.00 0.00 40.34 3.86
4054 4150 8.846211 TCTTCGGTTAGATTGTTTTGAAATTCT 58.154 29.630 0.00 0.00 0.00 2.40
4092 4188 5.783111 GGAACCAAAGTTGCATGTAAATCT 58.217 37.500 0.00 0.00 43.34 2.40
4188 4284 9.881649 CAGGTGTGATTATTATATGTAGCTCAT 57.118 33.333 0.00 0.00 40.25 2.90
4259 4518 7.769272 ACATGTAAACACAACTGAATTTTGG 57.231 32.000 0.00 0.00 0.00 3.28
4275 4534 3.726291 TTTGGGCACTTGAAGCTTTAC 57.274 42.857 0.00 0.00 0.00 2.01
4276 4535 2.656947 TGGGCACTTGAAGCTTTACT 57.343 45.000 0.00 0.00 0.00 2.24
4277 4536 3.780804 TGGGCACTTGAAGCTTTACTA 57.219 42.857 0.00 0.00 0.00 1.82
4278 4537 3.674997 TGGGCACTTGAAGCTTTACTAG 58.325 45.455 0.00 0.00 0.00 2.57
4279 4538 3.072476 TGGGCACTTGAAGCTTTACTAGT 59.928 43.478 0.00 0.00 0.00 2.57
4280 4539 4.285003 TGGGCACTTGAAGCTTTACTAGTA 59.715 41.667 0.00 0.00 0.00 1.82
4281 4540 5.221762 TGGGCACTTGAAGCTTTACTAGTAA 60.222 40.000 11.38 11.38 0.00 2.24
4282 4541 5.880887 GGGCACTTGAAGCTTTACTAGTAAT 59.119 40.000 15.92 1.13 0.00 1.89
4283 4542 7.046033 GGGCACTTGAAGCTTTACTAGTAATA 58.954 38.462 15.92 6.73 0.00 0.98
4284 4543 7.551617 GGGCACTTGAAGCTTTACTAGTAATAA 59.448 37.037 15.92 1.69 0.00 1.40
4285 4544 9.110502 GGCACTTGAAGCTTTACTAGTAATAAT 57.889 33.333 15.92 3.70 0.00 1.28
4286 4545 9.922305 GCACTTGAAGCTTTACTAGTAATAATG 57.078 33.333 15.92 8.22 0.00 1.90
4293 4552 8.571461 AGCTTTACTAGTAATAATGTACGTGC 57.429 34.615 15.92 0.00 0.00 5.34
4294 4553 8.192774 AGCTTTACTAGTAATAATGTACGTGCA 58.807 33.333 15.92 9.28 0.00 4.57
4295 4554 8.810427 GCTTTACTAGTAATAATGTACGTGCAA 58.190 33.333 15.92 0.00 0.00 4.08
4298 4557 7.173863 ACTAGTAATAATGTACGTGCAATGC 57.826 36.000 11.22 0.00 0.00 3.56
4299 4558 6.759356 ACTAGTAATAATGTACGTGCAATGCA 59.241 34.615 11.22 2.72 35.60 3.96
4315 4574 7.184800 TGCAATGCACGTTTATATTAGGTAG 57.815 36.000 2.72 0.00 31.71 3.18
4316 4575 6.203915 TGCAATGCACGTTTATATTAGGTAGG 59.796 38.462 2.72 0.00 31.71 3.18
4317 4576 6.425721 GCAATGCACGTTTATATTAGGTAGGA 59.574 38.462 0.00 0.00 0.00 2.94
4318 4577 7.119262 GCAATGCACGTTTATATTAGGTAGGAT 59.881 37.037 0.00 0.00 0.00 3.24
4319 4578 9.647797 CAATGCACGTTTATATTAGGTAGGATA 57.352 33.333 0.00 0.00 0.00 2.59
4331 4590 6.720112 TTAGGTAGGATATTACTTGCACGT 57.280 37.500 0.05 0.05 0.00 4.49
4332 4591 5.609533 AGGTAGGATATTACTTGCACGTT 57.390 39.130 0.00 0.00 0.00 3.99
4333 4592 6.720112 AGGTAGGATATTACTTGCACGTTA 57.280 37.500 0.00 0.00 0.00 3.18
4334 4593 7.299246 AGGTAGGATATTACTTGCACGTTAT 57.701 36.000 0.00 0.00 0.00 1.89
4335 4594 8.413309 AGGTAGGATATTACTTGCACGTTATA 57.587 34.615 0.00 2.61 0.00 0.98
4336 4595 9.032624 AGGTAGGATATTACTTGCACGTTATAT 57.967 33.333 12.90 12.90 0.00 0.86
4337 4596 9.649167 GGTAGGATATTACTTGCACGTTATATT 57.351 33.333 13.89 4.71 0.00 1.28
4340 4599 9.871238 AGGATATTACTTGCACGTTATATTAGG 57.129 33.333 13.89 0.00 0.00 2.69
4341 4600 9.649167 GGATATTACTTGCACGTTATATTAGGT 57.351 33.333 13.89 0.00 0.00 3.08
4360 4619 8.988064 ATTAGGTAAGATATATCTGTTGCACG 57.012 34.615 16.01 0.00 37.19 5.34
4361 4620 6.406692 AGGTAAGATATATCTGTTGCACGT 57.593 37.500 16.01 8.08 37.19 4.49
4362 4621 6.817184 AGGTAAGATATATCTGTTGCACGTT 58.183 36.000 16.01 0.00 37.19 3.99
4363 4622 6.701841 AGGTAAGATATATCTGTTGCACGTTG 59.298 38.462 16.01 0.00 37.19 4.10
4364 4623 5.991328 AAGATATATCTGTTGCACGTTGG 57.009 39.130 16.01 0.00 37.19 3.77
4365 4624 5.023533 AGATATATCTGTTGCACGTTGGT 57.976 39.130 14.60 0.00 35.42 3.67
4366 4625 6.156748 AGATATATCTGTTGCACGTTGGTA 57.843 37.500 14.60 0.00 35.42 3.25
4367 4626 6.759272 AGATATATCTGTTGCACGTTGGTAT 58.241 36.000 14.60 0.00 35.42 2.73
4368 4627 7.217200 AGATATATCTGTTGCACGTTGGTATT 58.783 34.615 14.60 0.00 35.42 1.89
4369 4628 7.715249 AGATATATCTGTTGCACGTTGGTATTT 59.285 33.333 14.60 0.00 35.42 1.40
4370 4629 8.896320 ATATATCTGTTGCACGTTGGTATTTA 57.104 30.769 0.00 0.00 0.00 1.40
4371 4630 5.545658 ATCTGTTGCACGTTGGTATTTAG 57.454 39.130 0.00 0.00 0.00 1.85
4372 4631 4.382291 TCTGTTGCACGTTGGTATTTAGT 58.618 39.130 0.00 0.00 0.00 2.24
4373 4632 5.539979 TCTGTTGCACGTTGGTATTTAGTA 58.460 37.500 0.00 0.00 0.00 1.82
4374 4633 5.990386 TCTGTTGCACGTTGGTATTTAGTAA 59.010 36.000 0.00 0.00 0.00 2.24
4375 4634 6.146510 TCTGTTGCACGTTGGTATTTAGTAAG 59.853 38.462 0.00 0.00 0.00 2.34
4376 4635 5.990386 TGTTGCACGTTGGTATTTAGTAAGA 59.010 36.000 0.00 0.00 0.00 2.10
4377 4636 6.651643 TGTTGCACGTTGGTATTTAGTAAGAT 59.348 34.615 0.00 0.00 0.00 2.40
4378 4637 7.818446 TGTTGCACGTTGGTATTTAGTAAGATA 59.182 33.333 0.00 0.00 0.00 1.98
4379 4638 8.823818 GTTGCACGTTGGTATTTAGTAAGATAT 58.176 33.333 0.00 0.00 0.00 1.63
4380 4639 8.583810 TGCACGTTGGTATTTAGTAAGATATC 57.416 34.615 0.00 0.00 0.00 1.63
4381 4640 8.198778 TGCACGTTGGTATTTAGTAAGATATCA 58.801 33.333 5.32 0.00 0.00 2.15
4382 4641 9.037737 GCACGTTGGTATTTAGTAAGATATCAA 57.962 33.333 5.32 6.65 0.00 2.57
4397 4656 9.931210 GTAAGATATCAATTACTTTTTCACGGG 57.069 33.333 5.32 0.00 0.00 5.28
4398 4657 8.801882 AAGATATCAATTACTTTTTCACGGGA 57.198 30.769 5.32 0.00 0.00 5.14
4399 4658 8.801882 AGATATCAATTACTTTTTCACGGGAA 57.198 30.769 5.32 0.00 0.00 3.97
4400 4659 9.408648 AGATATCAATTACTTTTTCACGGGAAT 57.591 29.630 0.00 0.00 31.93 3.01
4401 4660 9.450807 GATATCAATTACTTTTTCACGGGAATG 57.549 33.333 0.00 0.00 31.93 2.67
4402 4661 6.019779 TCAATTACTTTTTCACGGGAATGG 57.980 37.500 0.00 0.00 31.93 3.16
4403 4662 5.536916 TCAATTACTTTTTCACGGGAATGGT 59.463 36.000 0.00 3.30 31.93 3.55
4404 4663 6.715718 TCAATTACTTTTTCACGGGAATGGTA 59.284 34.615 0.00 2.28 31.93 3.25
4405 4664 7.230913 TCAATTACTTTTTCACGGGAATGGTAA 59.769 33.333 16.76 16.76 31.93 2.85
4406 4665 6.563222 TTACTTTTTCACGGGAATGGTAAG 57.437 37.500 0.00 5.80 31.93 2.34
4407 4666 4.721132 ACTTTTTCACGGGAATGGTAAGA 58.279 39.130 0.00 0.00 31.93 2.10
4408 4667 5.321927 ACTTTTTCACGGGAATGGTAAGAT 58.678 37.500 0.00 0.00 31.93 2.40
4409 4668 6.478129 ACTTTTTCACGGGAATGGTAAGATA 58.522 36.000 0.00 0.00 31.93 1.98
4410 4669 7.116736 ACTTTTTCACGGGAATGGTAAGATAT 58.883 34.615 0.00 0.00 31.93 1.63
4411 4670 7.614192 ACTTTTTCACGGGAATGGTAAGATATT 59.386 33.333 0.00 0.00 31.93 1.28
4412 4671 9.116067 CTTTTTCACGGGAATGGTAAGATATTA 57.884 33.333 0.00 0.00 31.93 0.98
4413 4672 9.463902 TTTTTCACGGGAATGGTAAGATATTAA 57.536 29.630 0.00 0.00 31.93 1.40
4414 4673 9.635404 TTTTCACGGGAATGGTAAGATATTAAT 57.365 29.630 0.00 0.00 31.93 1.40
4415 4674 9.635404 TTTCACGGGAATGGTAAGATATTAATT 57.365 29.630 0.00 0.00 31.93 1.40
4417 4676 9.715121 TCACGGGAATGGTAAGATATTAATTAC 57.285 33.333 0.00 0.00 0.00 1.89
4418 4677 9.496873 CACGGGAATGGTAAGATATTAATTACA 57.503 33.333 0.00 0.00 34.28 2.41
4434 4693 7.953005 TTAATTACATGGCAGATTTCAAGGA 57.047 32.000 0.00 0.00 0.00 3.36
4435 4694 6.855763 AATTACATGGCAGATTTCAAGGAA 57.144 33.333 0.00 0.00 0.00 3.36
4436 4695 7.427989 AATTACATGGCAGATTTCAAGGAAT 57.572 32.000 0.00 0.00 0.00 3.01
4437 4696 8.537728 AATTACATGGCAGATTTCAAGGAATA 57.462 30.769 0.00 0.00 0.00 1.75
4438 4697 7.572523 TTACATGGCAGATTTCAAGGAATAG 57.427 36.000 0.00 0.00 0.00 1.73
4439 4698 4.340381 ACATGGCAGATTTCAAGGAATAGC 59.660 41.667 0.00 0.00 0.00 2.97
4440 4699 2.945008 TGGCAGATTTCAAGGAATAGCG 59.055 45.455 0.00 0.00 0.00 4.26
4441 4700 2.945668 GGCAGATTTCAAGGAATAGCGT 59.054 45.455 0.00 0.00 0.00 5.07
4442 4701 3.378427 GGCAGATTTCAAGGAATAGCGTT 59.622 43.478 0.00 0.00 0.00 4.84
4443 4702 4.346129 GCAGATTTCAAGGAATAGCGTTG 58.654 43.478 0.00 0.00 42.27 4.10
4444 4703 4.094887 GCAGATTTCAAGGAATAGCGTTGA 59.905 41.667 0.00 0.00 46.34 3.18
4448 4707 3.953712 TCAAGGAATAGCGTTGAGTCA 57.046 42.857 0.00 0.00 44.03 3.41
4449 4708 4.265904 TCAAGGAATAGCGTTGAGTCAA 57.734 40.909 0.08 0.08 44.03 3.18
4450 4709 4.637276 TCAAGGAATAGCGTTGAGTCAAA 58.363 39.130 7.25 0.00 44.03 2.69
4451 4710 5.060506 TCAAGGAATAGCGTTGAGTCAAAA 58.939 37.500 7.25 0.00 44.03 2.44
4452 4711 5.705441 TCAAGGAATAGCGTTGAGTCAAAAT 59.295 36.000 7.25 0.00 44.03 1.82
4453 4712 6.876789 TCAAGGAATAGCGTTGAGTCAAAATA 59.123 34.615 7.25 1.46 44.03 1.40
4454 4713 7.552687 TCAAGGAATAGCGTTGAGTCAAAATAT 59.447 33.333 7.25 3.79 44.03 1.28
4455 4714 7.251704 AGGAATAGCGTTGAGTCAAAATATG 57.748 36.000 7.25 0.00 0.00 1.78
4456 4715 6.823689 AGGAATAGCGTTGAGTCAAAATATGT 59.176 34.615 7.25 0.00 0.00 2.29
4457 4716 7.336931 AGGAATAGCGTTGAGTCAAAATATGTT 59.663 33.333 7.25 0.00 0.00 2.71
4458 4717 7.968405 GGAATAGCGTTGAGTCAAAATATGTTT 59.032 33.333 7.25 0.00 0.00 2.83
4459 4718 9.982291 GAATAGCGTTGAGTCAAAATATGTTTA 57.018 29.630 7.25 0.00 0.00 2.01
4463 4722 9.769093 AGCGTTGAGTCAAAATATGTTTATAAC 57.231 29.630 7.25 0.00 0.00 1.89
4464 4723 9.006215 GCGTTGAGTCAAAATATGTTTATAACC 57.994 33.333 7.25 0.00 0.00 2.85
4470 4729 9.816354 AGTCAAAATATGTTTATAACCAATGGC 57.184 29.630 0.00 0.00 0.00 4.40
4471 4730 9.593134 GTCAAAATATGTTTATAACCAATGGCA 57.407 29.630 0.00 0.00 0.00 4.92
4472 4731 9.814899 TCAAAATATGTTTATAACCAATGGCAG 57.185 29.630 0.00 0.00 0.00 4.85
4473 4732 9.598517 CAAAATATGTTTATAACCAATGGCAGT 57.401 29.630 0.00 0.00 0.00 4.40
4474 4733 9.598517 AAAATATGTTTATAACCAATGGCAGTG 57.401 29.630 8.18 8.18 0.00 3.66
4475 4734 5.596836 ATGTTTATAACCAATGGCAGTGG 57.403 39.130 30.65 30.65 42.28 4.00
4480 4739 2.118076 CCAATGGCAGTGGTGGGT 59.882 61.111 25.07 0.00 0.00 4.51
4481 4740 1.382240 CCAATGGCAGTGGTGGGTA 59.618 57.895 25.07 0.00 0.00 3.69
4482 4741 0.251564 CCAATGGCAGTGGTGGGTAA 60.252 55.000 25.07 0.00 0.00 2.85
4483 4742 1.619432 CCAATGGCAGTGGTGGGTAAT 60.619 52.381 25.07 0.00 0.00 1.89
4484 4743 2.178580 CAATGGCAGTGGTGGGTAATT 58.821 47.619 7.12 0.00 0.00 1.40
4485 4744 3.360867 CAATGGCAGTGGTGGGTAATTA 58.639 45.455 7.12 0.00 0.00 1.40
4486 4745 2.799126 TGGCAGTGGTGGGTAATTAG 57.201 50.000 0.00 0.00 0.00 1.73
4487 4746 2.270858 TGGCAGTGGTGGGTAATTAGA 58.729 47.619 0.00 0.00 0.00 2.10
4488 4747 2.238646 TGGCAGTGGTGGGTAATTAGAG 59.761 50.000 0.00 0.00 0.00 2.43
4489 4748 2.289565 GCAGTGGTGGGTAATTAGAGC 58.710 52.381 0.00 0.00 0.00 4.09
4490 4749 2.550978 CAGTGGTGGGTAATTAGAGCG 58.449 52.381 0.00 0.00 0.00 5.03
4491 4750 2.093658 CAGTGGTGGGTAATTAGAGCGT 60.094 50.000 0.00 0.00 0.00 5.07
4492 4751 2.570302 AGTGGTGGGTAATTAGAGCGTT 59.430 45.455 0.00 0.00 0.00 4.84
4493 4752 3.770933 AGTGGTGGGTAATTAGAGCGTTA 59.229 43.478 0.00 0.00 0.00 3.18
4494 4753 4.223477 AGTGGTGGGTAATTAGAGCGTTAA 59.777 41.667 0.00 0.00 0.00 2.01
4495 4754 4.937015 GTGGTGGGTAATTAGAGCGTTAAA 59.063 41.667 0.00 0.00 0.00 1.52
4496 4755 4.937015 TGGTGGGTAATTAGAGCGTTAAAC 59.063 41.667 0.00 0.00 0.00 2.01
4497 4756 4.937015 GGTGGGTAATTAGAGCGTTAAACA 59.063 41.667 0.00 0.00 0.00 2.83
4498 4757 5.587443 GGTGGGTAATTAGAGCGTTAAACAT 59.413 40.000 0.00 0.00 0.00 2.71
4499 4758 6.457799 GGTGGGTAATTAGAGCGTTAAACATG 60.458 42.308 0.00 0.00 0.00 3.21
4500 4759 6.093082 GTGGGTAATTAGAGCGTTAAACATGT 59.907 38.462 0.00 0.00 0.00 3.21
4501 4760 6.655848 TGGGTAATTAGAGCGTTAAACATGTT 59.344 34.615 4.92 4.92 0.00 2.71
4502 4761 7.175293 TGGGTAATTAGAGCGTTAAACATGTTT 59.825 33.333 25.99 25.99 36.63 2.83
4503 4762 7.483691 GGGTAATTAGAGCGTTAAACATGTTTG 59.516 37.037 29.72 16.51 34.23 2.93
4504 4763 7.483691 GGTAATTAGAGCGTTAAACATGTTTGG 59.516 37.037 29.72 19.98 34.23 3.28
4505 4764 6.569179 ATTAGAGCGTTAAACATGTTTGGT 57.431 33.333 29.72 19.87 34.23 3.67
4506 4765 4.223320 AGAGCGTTAAACATGTTTGGTG 57.777 40.909 29.72 19.84 34.23 4.17
4507 4766 2.724174 GAGCGTTAAACATGTTTGGTGC 59.276 45.455 29.72 26.52 34.23 5.01
4508 4767 2.360801 AGCGTTAAACATGTTTGGTGCT 59.639 40.909 29.72 27.92 34.23 4.40
4509 4768 2.724174 GCGTTAAACATGTTTGGTGCTC 59.276 45.455 29.72 12.48 34.23 4.26
4510 4769 3.793801 GCGTTAAACATGTTTGGTGCTCA 60.794 43.478 29.72 8.67 34.23 4.26
4511 4770 4.355437 CGTTAAACATGTTTGGTGCTCAA 58.645 39.130 29.72 13.89 34.23 3.02
4512 4771 4.206200 CGTTAAACATGTTTGGTGCTCAAC 59.794 41.667 29.72 21.95 34.67 3.18
4513 4772 3.883830 AAACATGTTTGGTGCTCAACA 57.116 38.095 22.71 0.00 34.67 3.33
4514 4773 4.405116 AAACATGTTTGGTGCTCAACAT 57.595 36.364 22.71 0.00 34.67 2.71
4515 4774 4.405116 AACATGTTTGGTGCTCAACATT 57.595 36.364 4.92 0.00 34.67 2.71
4516 4775 3.719924 ACATGTTTGGTGCTCAACATTG 58.280 40.909 0.00 2.71 34.67 2.82
4517 4776 2.886862 TGTTTGGTGCTCAACATTGG 57.113 45.000 0.00 0.00 34.67 3.16
4518 4777 2.382882 TGTTTGGTGCTCAACATTGGA 58.617 42.857 0.00 0.00 34.67 3.53
4519 4778 2.361757 TGTTTGGTGCTCAACATTGGAG 59.638 45.455 0.00 0.00 34.67 3.86
4528 4787 4.424061 CTCAACATTGGAGCGATTTGAA 57.576 40.909 0.00 0.00 0.00 2.69
4529 4788 4.159377 TCAACATTGGAGCGATTTGAAC 57.841 40.909 0.00 0.00 0.00 3.18
4530 4789 3.057596 TCAACATTGGAGCGATTTGAACC 60.058 43.478 0.00 0.00 0.00 3.62
4531 4790 1.468520 ACATTGGAGCGATTTGAACCG 59.531 47.619 0.00 0.00 0.00 4.44
4540 4799 4.116713 GCGATTTGAACCGCTAGATAAC 57.883 45.455 0.00 0.00 46.96 1.89
4541 4800 3.554324 GCGATTTGAACCGCTAGATAACA 59.446 43.478 0.00 0.00 46.96 2.41
4542 4801 4.211374 GCGATTTGAACCGCTAGATAACAT 59.789 41.667 0.00 0.00 46.96 2.71
4543 4802 5.404366 GCGATTTGAACCGCTAGATAACATA 59.596 40.000 0.00 0.00 46.96 2.29
4544 4803 6.073980 GCGATTTGAACCGCTAGATAACATAA 60.074 38.462 0.00 0.00 46.96 1.90
4545 4804 7.360101 GCGATTTGAACCGCTAGATAACATAAT 60.360 37.037 0.00 0.00 46.96 1.28
4546 4805 8.495949 CGATTTGAACCGCTAGATAACATAATT 58.504 33.333 0.00 0.00 0.00 1.40
4548 4807 9.950680 ATTTGAACCGCTAGATAACATAATTTG 57.049 29.630 0.00 0.00 0.00 2.32
4549 4808 8.725405 TTGAACCGCTAGATAACATAATTTGA 57.275 30.769 0.00 0.00 0.00 2.69
4550 4809 8.902540 TGAACCGCTAGATAACATAATTTGAT 57.097 30.769 0.00 0.00 0.00 2.57
4551 4810 8.773645 TGAACCGCTAGATAACATAATTTGATG 58.226 33.333 0.00 0.00 0.00 3.07
4552 4811 7.672983 ACCGCTAGATAACATAATTTGATGG 57.327 36.000 0.00 0.00 0.00 3.51
4553 4812 7.224297 ACCGCTAGATAACATAATTTGATGGT 58.776 34.615 0.00 0.00 0.00 3.55
4554 4813 7.387948 ACCGCTAGATAACATAATTTGATGGTC 59.612 37.037 0.00 0.00 0.00 4.02
4555 4814 7.411912 CCGCTAGATAACATAATTTGATGGTCG 60.412 40.741 0.00 0.00 0.00 4.79
4556 4815 7.328493 CGCTAGATAACATAATTTGATGGTCGA 59.672 37.037 0.00 0.00 0.00 4.20
4557 4816 8.651588 GCTAGATAACATAATTTGATGGTCGAG 58.348 37.037 0.00 0.00 0.00 4.04
4558 4817 9.914131 CTAGATAACATAATTTGATGGTCGAGA 57.086 33.333 0.00 0.00 0.00 4.04
4560 4819 9.212641 AGATAACATAATTTGATGGTCGAGATG 57.787 33.333 0.00 0.00 0.00 2.90
4561 4820 6.624352 AACATAATTTGATGGTCGAGATGG 57.376 37.500 0.00 0.00 0.00 3.51
4562 4821 5.684704 ACATAATTTGATGGTCGAGATGGT 58.315 37.500 0.00 0.00 0.00 3.55
4563 4822 6.122277 ACATAATTTGATGGTCGAGATGGTT 58.878 36.000 0.00 0.00 0.00 3.67
4564 4823 6.603201 ACATAATTTGATGGTCGAGATGGTTT 59.397 34.615 0.00 0.00 0.00 3.27
4565 4824 4.970662 ATTTGATGGTCGAGATGGTTTG 57.029 40.909 0.00 0.00 0.00 2.93
4566 4825 3.694043 TTGATGGTCGAGATGGTTTGA 57.306 42.857 0.00 0.00 0.00 2.69
4567 4826 3.694043 TGATGGTCGAGATGGTTTGAA 57.306 42.857 0.00 0.00 0.00 2.69
4568 4827 4.220693 TGATGGTCGAGATGGTTTGAAT 57.779 40.909 0.00 0.00 0.00 2.57
4569 4828 4.191544 TGATGGTCGAGATGGTTTGAATC 58.808 43.478 0.00 0.00 0.00 2.52
4570 4829 3.981071 TGGTCGAGATGGTTTGAATCT 57.019 42.857 0.00 0.00 37.09 2.40
4571 4830 3.599343 TGGTCGAGATGGTTTGAATCTG 58.401 45.455 0.00 0.00 34.50 2.90
4572 4831 2.352960 GGTCGAGATGGTTTGAATCTGC 59.647 50.000 0.00 0.00 34.50 4.26
4573 4832 2.352960 GTCGAGATGGTTTGAATCTGCC 59.647 50.000 0.00 0.00 34.50 4.85
4574 4833 1.672881 CGAGATGGTTTGAATCTGCCC 59.327 52.381 0.00 0.00 34.50 5.36
4575 4834 2.726821 GAGATGGTTTGAATCTGCCCA 58.273 47.619 0.00 0.00 34.50 5.36
4576 4835 3.294214 GAGATGGTTTGAATCTGCCCAT 58.706 45.455 0.00 0.00 38.58 4.00
4577 4836 3.703052 GAGATGGTTTGAATCTGCCCATT 59.297 43.478 0.00 0.00 36.08 3.16
4578 4837 4.098894 AGATGGTTTGAATCTGCCCATTT 58.901 39.130 0.00 0.00 36.08 2.32
4579 4838 3.681593 TGGTTTGAATCTGCCCATTTG 57.318 42.857 0.00 0.00 0.00 2.32
4580 4839 2.302445 TGGTTTGAATCTGCCCATTTGG 59.698 45.455 0.00 0.00 37.09 3.28
4598 4857 8.940397 CCATTTGGGTCTTCTTATATTGGTAT 57.060 34.615 0.00 0.00 0.00 2.73
4703 4962 2.363359 CTGTTCTTGCCTTCTTGCCTTT 59.637 45.455 0.00 0.00 0.00 3.11
4777 5036 4.824479 TCTATTGATGGTTCAGACAGCA 57.176 40.909 0.00 0.00 32.27 4.41
4893 5152 2.964209 TGGGGTAGCAATTTCAAACCA 58.036 42.857 0.00 0.00 31.58 3.67
5579 5839 8.657074 TTGTTCTCGAGTTTTTCTCTTCATTA 57.343 30.769 13.13 0.00 40.75 1.90
5709 5970 4.156556 TCTTATTGAGCATGTTCTTGCACC 59.843 41.667 11.09 5.29 45.23 5.01
5734 5995 4.560128 TCTTTCCTGTTCTGAAGATCACG 58.440 43.478 0.00 0.00 0.00 4.35
5790 6052 8.418662 TCTACTAAATCGTGCTGGTACAATTAT 58.581 33.333 0.00 0.00 38.70 1.28
5791 6053 7.478520 ACTAAATCGTGCTGGTACAATTATC 57.521 36.000 0.00 0.00 38.70 1.75
5793 6055 6.751514 AAATCGTGCTGGTACAATTATCAA 57.248 33.333 0.00 0.00 38.70 2.57
5829 6091 1.066143 GCTACTGGCAGCTCCTTGTTA 60.066 52.381 15.89 0.00 41.35 2.41
5841 6103 5.065218 CAGCTCCTTGTTAATGTCCATGTAC 59.935 44.000 0.00 0.00 0.00 2.90
5842 6104 5.045578 AGCTCCTTGTTAATGTCCATGTACT 60.046 40.000 0.00 0.00 0.00 2.73
5843 6105 6.156256 AGCTCCTTGTTAATGTCCATGTACTA 59.844 38.462 0.00 0.00 0.00 1.82
5844 6106 6.258068 GCTCCTTGTTAATGTCCATGTACTAC 59.742 42.308 0.00 0.00 0.00 2.73
5845 6107 7.490657 TCCTTGTTAATGTCCATGTACTACT 57.509 36.000 0.00 0.00 0.00 2.57
5846 6108 7.553334 TCCTTGTTAATGTCCATGTACTACTC 58.447 38.462 0.00 0.00 0.00 2.59
5847 6109 6.761714 CCTTGTTAATGTCCATGTACTACTCC 59.238 42.308 0.00 0.00 0.00 3.85
5848 6110 6.229936 TGTTAATGTCCATGTACTACTCCC 57.770 41.667 0.00 0.00 0.00 4.30
5849 6111 5.962031 TGTTAATGTCCATGTACTACTCCCT 59.038 40.000 0.00 0.00 0.00 4.20
5850 6112 6.097839 TGTTAATGTCCATGTACTACTCCCTC 59.902 42.308 0.00 0.00 0.00 4.30
5851 6113 3.028094 TGTCCATGTACTACTCCCTCC 57.972 52.381 0.00 0.00 0.00 4.30
5852 6114 2.313643 TGTCCATGTACTACTCCCTCCA 59.686 50.000 0.00 0.00 0.00 3.86
5853 6115 3.052109 TGTCCATGTACTACTCCCTCCAT 60.052 47.826 0.00 0.00 0.00 3.41
5854 6116 3.967987 GTCCATGTACTACTCCCTCCATT 59.032 47.826 0.00 0.00 0.00 3.16
5855 6117 4.039366 GTCCATGTACTACTCCCTCCATTC 59.961 50.000 0.00 0.00 0.00 2.67
5856 6118 3.325135 CCATGTACTACTCCCTCCATTCC 59.675 52.174 0.00 0.00 0.00 3.01
5857 6119 3.769189 TGTACTACTCCCTCCATTCCA 57.231 47.619 0.00 0.00 0.00 3.53
5858 6120 4.069312 TGTACTACTCCCTCCATTCCAA 57.931 45.455 0.00 0.00 0.00 3.53
5859 6121 4.431378 TGTACTACTCCCTCCATTCCAAA 58.569 43.478 0.00 0.00 0.00 3.28
5860 6122 4.847512 TGTACTACTCCCTCCATTCCAAAA 59.152 41.667 0.00 0.00 0.00 2.44
5861 6123 5.491078 TGTACTACTCCCTCCATTCCAAAAT 59.509 40.000 0.00 0.00 0.00 1.82
5862 6124 6.674861 TGTACTACTCCCTCCATTCCAAAATA 59.325 38.462 0.00 0.00 0.00 1.40
5863 6125 6.253946 ACTACTCCCTCCATTCCAAAATAG 57.746 41.667 0.00 0.00 0.00 1.73
5864 6126 5.970640 ACTACTCCCTCCATTCCAAAATAGA 59.029 40.000 0.00 0.00 0.00 1.98
5865 6127 6.621514 ACTACTCCCTCCATTCCAAAATAGAT 59.378 38.462 0.00 0.00 0.00 1.98
5866 6128 5.699143 ACTCCCTCCATTCCAAAATAGATG 58.301 41.667 0.00 0.00 0.00 2.90
5867 6129 5.433051 ACTCCCTCCATTCCAAAATAGATGA 59.567 40.000 0.00 0.00 0.00 2.92
5868 6130 5.694995 TCCCTCCATTCCAAAATAGATGAC 58.305 41.667 0.00 0.00 0.00 3.06
5869 6131 5.433051 TCCCTCCATTCCAAAATAGATGACT 59.567 40.000 0.00 0.00 0.00 3.41
5870 6132 5.767168 CCCTCCATTCCAAAATAGATGACTC 59.233 44.000 0.00 0.00 0.00 3.36
5871 6133 6.359804 CCTCCATTCCAAAATAGATGACTCA 58.640 40.000 0.00 0.00 0.00 3.41
5872 6134 6.830324 CCTCCATTCCAAAATAGATGACTCAA 59.170 38.462 0.00 0.00 0.00 3.02
5873 6135 7.201767 CCTCCATTCCAAAATAGATGACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
5874 6136 7.405292 TCCATTCCAAAATAGATGACTCAACT 58.595 34.615 0.00 0.00 0.00 3.16
5875 6137 7.890127 TCCATTCCAAAATAGATGACTCAACTT 59.110 33.333 0.00 0.00 0.00 2.66
5876 6138 8.526147 CCATTCCAAAATAGATGACTCAACTTT 58.474 33.333 0.00 0.00 0.00 2.66
5877 6139 9.350357 CATTCCAAAATAGATGACTCAACTTTG 57.650 33.333 0.00 0.00 0.00 2.77
5878 6140 8.463930 TTCCAAAATAGATGACTCAACTTTGT 57.536 30.769 0.00 0.00 0.00 2.83
5879 6141 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
5880 6142 9.567776 TCCAAAATAGATGACTCAACTTTGTAA 57.432 29.630 0.00 0.00 0.00 2.41
5888 6150 9.614792 AGATGACTCAACTTTGTAAAAGTTAGT 57.385 29.630 15.62 16.87 38.32 2.24
5905 6167 9.975218 AAAAGTTAGTATAATGTTGGGTCATCT 57.025 29.630 0.00 0.00 0.00 2.90
5916 6178 6.968263 TGTTGGGTCATCTATTTTGAAACA 57.032 33.333 0.00 0.00 0.00 2.83
5917 6179 6.980593 TGTTGGGTCATCTATTTTGAAACAG 58.019 36.000 0.00 0.00 0.00 3.16
5918 6180 6.775142 TGTTGGGTCATCTATTTTGAAACAGA 59.225 34.615 0.00 0.00 0.00 3.41
5919 6181 7.040478 TGTTGGGTCATCTATTTTGAAACAGAG 60.040 37.037 0.00 0.00 0.00 3.35
5920 6182 5.945784 TGGGTCATCTATTTTGAAACAGAGG 59.054 40.000 0.00 0.00 0.00 3.69
5921 6183 5.358160 GGGTCATCTATTTTGAAACAGAGGG 59.642 44.000 0.00 0.00 0.00 4.30
5922 6184 6.180472 GGTCATCTATTTTGAAACAGAGGGA 58.820 40.000 0.00 0.00 0.00 4.20
5923 6185 6.317391 GGTCATCTATTTTGAAACAGAGGGAG 59.683 42.308 0.00 0.00 0.00 4.30
6110 6372 8.833231 TTTCAGAAAGAAAGAAGTACATCGAT 57.167 30.769 0.00 0.00 41.17 3.59
6253 6617 1.511850 TATCCCGCAAATCATCGCAG 58.488 50.000 0.00 0.00 0.00 5.18
6273 6637 5.338365 GCAGACAATCTAATCCTGCAAAAG 58.662 41.667 0.00 0.00 46.68 2.27
6383 6748 4.730657 AGCAATTCAAGCAAGAAAGATCG 58.269 39.130 0.00 0.00 0.00 3.69
6428 6794 2.030958 GCACATTTGCTGCCTTGCC 61.031 57.895 0.00 0.00 46.17 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 6.183360 CGGTTGCGGTCAAATAATAAACTACT 60.183 38.462 0.00 0.00 33.37 2.57
143 150 2.305928 TGTGCCTTGCTTGCTCTTTTA 58.694 42.857 0.00 0.00 0.00 1.52
148 155 1.370900 CGTTGTGCCTTGCTTGCTC 60.371 57.895 0.00 0.00 0.00 4.26
150 157 2.355009 CCGTTGTGCCTTGCTTGC 60.355 61.111 0.00 0.00 0.00 4.01
160 167 1.669115 CAGTCTGGCTCCCGTTGTG 60.669 63.158 0.00 0.00 0.00 3.33
161 168 0.830444 TACAGTCTGGCTCCCGTTGT 60.830 55.000 4.53 0.00 0.00 3.32
252 260 5.768317 ACCTTTGGTTTGTTATGATTGACG 58.232 37.500 0.00 0.00 27.29 4.35
259 267 4.742659 CGTTTGGACCTTTGGTTTGTTATG 59.257 41.667 0.00 0.00 35.25 1.90
261 269 4.015084 TCGTTTGGACCTTTGGTTTGTTA 58.985 39.130 0.00 0.00 35.25 2.41
291 299 0.878416 TGATTTGTTTTCGCCGGGAG 59.122 50.000 2.18 0.00 0.00 4.30
293 301 1.201181 TCATGATTTGTTTTCGCCGGG 59.799 47.619 2.18 0.00 0.00 5.73
298 307 2.339400 GCGTGCTCATGATTTGTTTTCG 59.661 45.455 0.00 0.00 0.00 3.46
323 332 7.119387 AGATTATGATGATGATGTGCCATGAT 58.881 34.615 0.00 0.00 0.00 2.45
893 905 0.721483 GTTTTGGAAGCTTCGTCGCG 60.721 55.000 19.91 0.00 34.40 5.87
894 906 0.385598 GGTTTTGGAAGCTTCGTCGC 60.386 55.000 19.91 6.92 0.00 5.19
895 907 0.237498 GGGTTTTGGAAGCTTCGTCG 59.763 55.000 19.91 0.00 33.81 5.12
896 908 0.596577 GGGGTTTTGGAAGCTTCGTC 59.403 55.000 19.91 8.01 33.81 4.20
897 909 0.826256 GGGGGTTTTGGAAGCTTCGT 60.826 55.000 19.91 0.00 33.81 3.85
898 910 0.825840 TGGGGGTTTTGGAAGCTTCG 60.826 55.000 19.91 0.00 33.81 3.79
1053 1065 2.745884 TTGTTCCGCATCAGCCGG 60.746 61.111 0.00 0.00 37.52 6.13
1194 1206 1.956477 GCAGCAGGAAGGAAAAACTCA 59.044 47.619 0.00 0.00 0.00 3.41
1220 1250 2.240493 AAAGGACAACTCCGTCACTG 57.760 50.000 0.00 0.00 42.22 3.66
1236 1266 3.369546 ACATCAAGAAACGCCCAAAAG 57.630 42.857 0.00 0.00 0.00 2.27
1253 1283 4.456911 ACATTCTCGTCAATCTGCAAACAT 59.543 37.500 0.00 0.00 0.00 2.71
1313 1343 4.165180 TCCTTGAATCGGATTATGTTGGGA 59.835 41.667 2.65 3.80 0.00 4.37
1563 1593 0.673333 ATCAGTTGCACGAATCGGCA 60.673 50.000 13.19 13.19 38.46 5.69
1568 1598 1.078709 CGACCATCAGTTGCACGAAT 58.921 50.000 0.00 0.00 0.00 3.34
1575 1605 0.798776 GACAAGGCGACCATCAGTTG 59.201 55.000 0.00 0.00 0.00 3.16
1579 1609 2.668632 GGGACAAGGCGACCATCA 59.331 61.111 0.00 0.00 0.00 3.07
1720 1752 1.150827 TTGCTGCAGATCAACGACTG 58.849 50.000 20.43 0.00 37.22 3.51
1854 1886 6.703165 CAGAAAATGCCTCCCTTTATAATTGC 59.297 38.462 0.00 0.00 0.00 3.56
2001 2035 1.076549 GGTCAACAATGGCAGGGGA 59.923 57.895 0.00 0.00 30.82 4.81
2021 2055 2.251371 GTGGCGCCGAACTTGTTC 59.749 61.111 23.90 3.60 0.00 3.18
2057 2091 1.071299 ATGTTCAGTGCACCGCAGA 59.929 52.632 14.63 3.90 40.08 4.26
2206 2255 1.447317 GGCAGAGAGAGAGAGAGCCG 61.447 65.000 0.00 0.00 0.00 5.52
2207 2256 1.447317 CGGCAGAGAGAGAGAGAGCC 61.447 65.000 0.00 0.00 37.32 4.70
2208 2257 0.748005 ACGGCAGAGAGAGAGAGAGC 60.748 60.000 0.00 0.00 0.00 4.09
2222 2271 3.684788 GCAGAAGAATAGAGAAAACGGCA 59.315 43.478 0.00 0.00 0.00 5.69
2308 2357 1.153549 CTCACGGGCTAGGACAAGC 60.154 63.158 0.00 0.00 41.99 4.01
2431 2480 3.512516 GGCCCACTCGCTGAATGC 61.513 66.667 0.00 0.00 38.57 3.56
2451 2501 2.398554 CCACGCCAGAATGAACCCG 61.399 63.158 0.00 0.00 39.69 5.28
2803 2863 1.979469 CGACGTCATGAGACACAGAAC 59.021 52.381 17.16 0.00 45.23 3.01
2886 2946 1.375908 GACATCGCTGGTTGGAGCA 60.376 57.895 0.00 0.00 39.07 4.26
3295 3390 5.105567 TCTCCGTCTGGGCATTTTAATTA 57.894 39.130 0.00 0.00 35.24 1.40
3307 3402 0.757188 ACTGGCCTATCTCCGTCTGG 60.757 60.000 3.32 0.00 0.00 3.86
3322 3417 3.737266 GTCACAAACATGCATTCAACTGG 59.263 43.478 0.00 0.00 0.00 4.00
3403 3498 4.712122 AATGACACGTCCAACAAAAACT 57.288 36.364 0.00 0.00 0.00 2.66
3515 3611 9.462174 CAATTAGCTAATCAGTTTGTTTCACAA 57.538 29.630 19.11 0.00 36.11 3.33
3516 3612 8.845227 TCAATTAGCTAATCAGTTTGTTTCACA 58.155 29.630 19.11 0.00 0.00 3.58
3524 3620 9.013229 TGACAACATCAATTAGCTAATCAGTTT 57.987 29.630 19.11 1.41 33.02 2.66
3559 3655 7.283127 GCTACTTGAAAATGATTGGGTCAGATA 59.717 37.037 0.00 0.00 40.92 1.98
3752 3848 3.073798 TGGAAAGCCAAGATGTAACCAGA 59.926 43.478 0.00 0.00 42.49 3.86
3788 3884 0.653636 TTCGACAAGCAAACACGACC 59.346 50.000 0.00 0.00 32.89 4.79
3805 3901 3.868077 AGCGCATCATACTGTTTCTCTTC 59.132 43.478 11.47 0.00 0.00 2.87
3885 3981 5.715279 GTCTTAAAAGGGTTGGCCTAGAAAT 59.285 40.000 3.32 0.00 34.45 2.17
3986 4082 7.887996 AACACAACAGCATAATTTAATGTGG 57.112 32.000 7.39 0.00 40.78 4.17
4054 4150 2.238521 GGTTCCACAAAGGCAATCAGA 58.761 47.619 0.00 0.00 37.29 3.27
4248 4507 3.493176 GCTTCAAGTGCCCAAAATTCAGT 60.493 43.478 0.00 0.00 0.00 3.41
4259 4518 6.986904 ATTACTAGTAAAGCTTCAAGTGCC 57.013 37.500 18.88 0.00 0.00 5.01
4275 4534 7.172654 TGCATTGCACGTACATTATTACTAG 57.827 36.000 7.38 0.00 31.71 2.57
4291 4550 6.203915 CCTACCTAATATAAACGTGCATTGCA 59.796 38.462 7.38 7.38 35.60 4.08
4292 4551 6.425721 TCCTACCTAATATAAACGTGCATTGC 59.574 38.462 0.46 0.46 0.00 3.56
4293 4552 7.956420 TCCTACCTAATATAAACGTGCATTG 57.044 36.000 0.00 0.00 0.00 2.82
4305 4564 9.032624 ACGTGCAAGTAATATCCTACCTAATAT 57.967 33.333 2.53 0.00 0.00 1.28
4306 4565 8.413309 ACGTGCAAGTAATATCCTACCTAATA 57.587 34.615 2.53 0.00 0.00 0.98
4307 4566 7.299246 ACGTGCAAGTAATATCCTACCTAAT 57.701 36.000 2.53 0.00 0.00 1.73
4308 4567 6.720112 ACGTGCAAGTAATATCCTACCTAA 57.280 37.500 2.53 0.00 0.00 2.69
4309 4568 6.720112 AACGTGCAAGTAATATCCTACCTA 57.280 37.500 5.50 0.00 0.00 3.08
4310 4569 5.609533 AACGTGCAAGTAATATCCTACCT 57.390 39.130 5.50 0.00 0.00 3.08
4311 4570 9.649167 AATATAACGTGCAAGTAATATCCTACC 57.351 33.333 5.50 0.00 0.00 3.18
4314 4573 9.871238 CCTAATATAACGTGCAAGTAATATCCT 57.129 33.333 5.50 0.00 0.00 3.24
4315 4574 9.649167 ACCTAATATAACGTGCAAGTAATATCC 57.351 33.333 5.50 0.00 0.00 2.59
4335 4594 8.585881 ACGTGCAACAGATATATCTTACCTAAT 58.414 33.333 12.75 0.00 35.74 1.73
4336 4595 7.948357 ACGTGCAACAGATATATCTTACCTAA 58.052 34.615 12.75 0.00 35.74 2.69
4337 4596 7.520451 ACGTGCAACAGATATATCTTACCTA 57.480 36.000 12.75 0.00 35.74 3.08
4338 4597 6.406692 ACGTGCAACAGATATATCTTACCT 57.593 37.500 12.75 0.00 35.74 3.08
4339 4598 6.073765 CCAACGTGCAACAGATATATCTTACC 60.074 42.308 12.75 3.07 35.74 2.85
4340 4599 6.479001 ACCAACGTGCAACAGATATATCTTAC 59.521 38.462 12.75 6.63 35.74 2.34
4341 4600 6.578944 ACCAACGTGCAACAGATATATCTTA 58.421 36.000 12.75 0.00 35.74 2.10
4342 4601 5.428253 ACCAACGTGCAACAGATATATCTT 58.572 37.500 12.75 2.49 35.74 2.40
4343 4602 5.023533 ACCAACGTGCAACAGATATATCT 57.976 39.130 9.57 9.57 35.74 1.98
4344 4603 7.421530 AATACCAACGTGCAACAGATATATC 57.578 36.000 4.42 4.42 35.74 1.63
4345 4604 7.801716 AAATACCAACGTGCAACAGATATAT 57.198 32.000 0.00 0.00 35.74 0.86
4346 4605 7.982919 ACTAAATACCAACGTGCAACAGATATA 59.017 33.333 0.00 0.00 35.74 0.86
4347 4606 6.821665 ACTAAATACCAACGTGCAACAGATAT 59.178 34.615 0.00 0.00 35.74 1.63
4348 4607 6.167685 ACTAAATACCAACGTGCAACAGATA 58.832 36.000 0.00 0.00 35.74 1.98
4349 4608 5.001232 ACTAAATACCAACGTGCAACAGAT 58.999 37.500 0.00 0.00 35.74 2.90
4350 4609 4.382291 ACTAAATACCAACGTGCAACAGA 58.618 39.130 0.00 0.00 35.74 3.41
4351 4610 4.742438 ACTAAATACCAACGTGCAACAG 57.258 40.909 0.00 0.00 35.74 3.16
4352 4611 5.990386 TCTTACTAAATACCAACGTGCAACA 59.010 36.000 0.00 0.00 35.74 3.33
4353 4612 6.470557 TCTTACTAAATACCAACGTGCAAC 57.529 37.500 0.00 0.00 0.00 4.17
4354 4613 8.951787 ATATCTTACTAAATACCAACGTGCAA 57.048 30.769 0.00 0.00 0.00 4.08
4355 4614 8.198778 TGATATCTTACTAAATACCAACGTGCA 58.801 33.333 3.98 0.00 0.00 4.57
4356 4615 8.583810 TGATATCTTACTAAATACCAACGTGC 57.416 34.615 3.98 0.00 0.00 5.34
4371 4630 9.931210 CCCGTGAAAAAGTAATTGATATCTTAC 57.069 33.333 3.98 5.62 0.00 2.34
4372 4631 9.893634 TCCCGTGAAAAAGTAATTGATATCTTA 57.106 29.630 3.98 0.00 0.00 2.10
4373 4632 8.801882 TCCCGTGAAAAAGTAATTGATATCTT 57.198 30.769 3.98 0.00 0.00 2.40
4374 4633 8.801882 TTCCCGTGAAAAAGTAATTGATATCT 57.198 30.769 3.98 0.00 0.00 1.98
4375 4634 9.450807 CATTCCCGTGAAAAAGTAATTGATATC 57.549 33.333 0.00 0.00 33.32 1.63
4376 4635 8.413229 CCATTCCCGTGAAAAAGTAATTGATAT 58.587 33.333 0.00 0.00 33.32 1.63
4377 4636 7.394923 ACCATTCCCGTGAAAAAGTAATTGATA 59.605 33.333 0.00 0.00 33.32 2.15
4378 4637 6.210584 ACCATTCCCGTGAAAAAGTAATTGAT 59.789 34.615 0.00 0.00 33.32 2.57
4379 4638 5.536916 ACCATTCCCGTGAAAAAGTAATTGA 59.463 36.000 0.00 0.00 33.32 2.57
4380 4639 5.778862 ACCATTCCCGTGAAAAAGTAATTG 58.221 37.500 0.00 0.00 33.32 2.32
4381 4640 7.449086 TCTTACCATTCCCGTGAAAAAGTAATT 59.551 33.333 0.00 0.00 33.32 1.40
4382 4641 6.943718 TCTTACCATTCCCGTGAAAAAGTAAT 59.056 34.615 0.00 0.00 33.32 1.89
4383 4642 6.297582 TCTTACCATTCCCGTGAAAAAGTAA 58.702 36.000 0.00 0.00 33.32 2.24
4384 4643 5.867330 TCTTACCATTCCCGTGAAAAAGTA 58.133 37.500 0.00 0.00 33.32 2.24
4385 4644 4.721132 TCTTACCATTCCCGTGAAAAAGT 58.279 39.130 0.00 0.00 33.32 2.66
4386 4645 5.897377 ATCTTACCATTCCCGTGAAAAAG 57.103 39.130 0.00 0.00 33.32 2.27
4387 4646 7.948034 AATATCTTACCATTCCCGTGAAAAA 57.052 32.000 0.00 0.00 33.32 1.94
4388 4647 9.635404 ATTAATATCTTACCATTCCCGTGAAAA 57.365 29.630 0.00 0.00 33.32 2.29
4389 4648 9.635404 AATTAATATCTTACCATTCCCGTGAAA 57.365 29.630 0.00 0.00 33.32 2.69
4391 4650 9.715121 GTAATTAATATCTTACCATTCCCGTGA 57.285 33.333 0.00 0.00 0.00 4.35
4392 4651 9.496873 TGTAATTAATATCTTACCATTCCCGTG 57.503 33.333 0.00 0.00 0.00 4.94
4408 4667 9.639563 TCCTTGAAATCTGCCATGTAATTAATA 57.360 29.630 0.00 0.00 0.00 0.98
4409 4668 8.537728 TCCTTGAAATCTGCCATGTAATTAAT 57.462 30.769 0.00 0.00 0.00 1.40
4410 4669 7.953005 TCCTTGAAATCTGCCATGTAATTAA 57.047 32.000 0.00 0.00 0.00 1.40
4411 4670 7.953005 TTCCTTGAAATCTGCCATGTAATTA 57.047 32.000 0.00 0.00 0.00 1.40
4412 4671 6.855763 TTCCTTGAAATCTGCCATGTAATT 57.144 33.333 0.00 0.00 0.00 1.40
4413 4672 7.255730 GCTATTCCTTGAAATCTGCCATGTAAT 60.256 37.037 0.00 0.00 0.00 1.89
4414 4673 6.039717 GCTATTCCTTGAAATCTGCCATGTAA 59.960 38.462 0.00 0.00 0.00 2.41
4415 4674 5.532406 GCTATTCCTTGAAATCTGCCATGTA 59.468 40.000 0.00 0.00 0.00 2.29
4416 4675 4.340381 GCTATTCCTTGAAATCTGCCATGT 59.660 41.667 0.00 0.00 0.00 3.21
4417 4676 4.556104 CGCTATTCCTTGAAATCTGCCATG 60.556 45.833 0.00 0.00 0.00 3.66
4418 4677 3.567164 CGCTATTCCTTGAAATCTGCCAT 59.433 43.478 0.00 0.00 0.00 4.40
4419 4678 2.945008 CGCTATTCCTTGAAATCTGCCA 59.055 45.455 0.00 0.00 0.00 4.92
4420 4679 2.945668 ACGCTATTCCTTGAAATCTGCC 59.054 45.455 0.00 0.00 0.00 4.85
4421 4680 4.094887 TCAACGCTATTCCTTGAAATCTGC 59.905 41.667 0.00 0.00 0.00 4.26
4422 4681 5.352569 ACTCAACGCTATTCCTTGAAATCTG 59.647 40.000 0.00 0.00 0.00 2.90
4423 4682 5.491982 ACTCAACGCTATTCCTTGAAATCT 58.508 37.500 0.00 0.00 0.00 2.40
4424 4683 5.351465 TGACTCAACGCTATTCCTTGAAATC 59.649 40.000 0.00 0.00 0.00 2.17
4425 4684 5.245531 TGACTCAACGCTATTCCTTGAAAT 58.754 37.500 0.00 0.00 0.00 2.17
4426 4685 4.637276 TGACTCAACGCTATTCCTTGAAA 58.363 39.130 0.00 0.00 0.00 2.69
4427 4686 4.265904 TGACTCAACGCTATTCCTTGAA 57.734 40.909 0.00 0.00 0.00 2.69
4428 4687 3.953712 TGACTCAACGCTATTCCTTGA 57.046 42.857 0.00 0.00 0.00 3.02
4429 4688 5.356882 TTTTGACTCAACGCTATTCCTTG 57.643 39.130 0.00 0.00 0.00 3.61
4430 4689 7.336931 ACATATTTTGACTCAACGCTATTCCTT 59.663 33.333 0.00 0.00 0.00 3.36
4431 4690 6.823689 ACATATTTTGACTCAACGCTATTCCT 59.176 34.615 0.00 0.00 0.00 3.36
4432 4691 7.016361 ACATATTTTGACTCAACGCTATTCC 57.984 36.000 0.00 0.00 0.00 3.01
4433 4692 8.895932 AAACATATTTTGACTCAACGCTATTC 57.104 30.769 0.00 0.00 0.00 1.75
4437 4696 9.769093 GTTATAAACATATTTTGACTCAACGCT 57.231 29.630 0.00 0.00 0.00 5.07
4438 4697 9.006215 GGTTATAAACATATTTTGACTCAACGC 57.994 33.333 0.00 0.00 0.00 4.84
4444 4703 9.816354 GCCATTGGTTATAAACATATTTTGACT 57.184 29.630 3.54 0.00 0.00 3.41
4445 4704 9.593134 TGCCATTGGTTATAAACATATTTTGAC 57.407 29.630 3.54 0.00 0.00 3.18
4446 4705 9.814899 CTGCCATTGGTTATAAACATATTTTGA 57.185 29.630 3.54 0.00 0.00 2.69
4447 4706 9.598517 ACTGCCATTGGTTATAAACATATTTTG 57.401 29.630 3.54 0.00 0.00 2.44
4448 4707 9.598517 CACTGCCATTGGTTATAAACATATTTT 57.401 29.630 3.54 0.00 0.00 1.82
4449 4708 8.203485 CCACTGCCATTGGTTATAAACATATTT 58.797 33.333 3.54 0.00 0.00 1.40
4450 4709 7.344352 ACCACTGCCATTGGTTATAAACATATT 59.656 33.333 3.54 0.00 45.62 1.28
4451 4710 6.838612 ACCACTGCCATTGGTTATAAACATAT 59.161 34.615 3.54 0.00 45.62 1.78
4452 4711 6.096141 CACCACTGCCATTGGTTATAAACATA 59.904 38.462 3.63 0.00 45.62 2.29
4453 4712 5.022787 ACCACTGCCATTGGTTATAAACAT 58.977 37.500 3.54 0.00 45.62 2.71
4454 4713 4.219507 CACCACTGCCATTGGTTATAAACA 59.780 41.667 3.63 0.00 45.62 2.83
4455 4714 4.381505 CCACCACTGCCATTGGTTATAAAC 60.382 45.833 3.63 0.00 45.62 2.01
4456 4715 3.766591 CCACCACTGCCATTGGTTATAAA 59.233 43.478 3.63 0.00 45.62 1.40
4457 4716 3.360867 CCACCACTGCCATTGGTTATAA 58.639 45.455 3.63 0.00 45.62 0.98
4458 4717 2.357673 CCCACCACTGCCATTGGTTATA 60.358 50.000 3.63 0.00 45.62 0.98
4459 4718 1.619432 CCCACCACTGCCATTGGTTAT 60.619 52.381 3.63 0.00 45.62 1.89
4460 4719 0.251564 CCCACCACTGCCATTGGTTA 60.252 55.000 3.63 0.00 45.62 2.85
4461 4720 1.533753 CCCACCACTGCCATTGGTT 60.534 57.895 3.63 0.00 45.62 3.67
4463 4722 0.251564 TTACCCACCACTGCCATTGG 60.252 55.000 0.00 0.00 40.32 3.16
4464 4723 1.851304 ATTACCCACCACTGCCATTG 58.149 50.000 0.00 0.00 0.00 2.82
4465 4724 2.621556 AATTACCCACCACTGCCATT 57.378 45.000 0.00 0.00 0.00 3.16
4466 4725 2.849943 TCTAATTACCCACCACTGCCAT 59.150 45.455 0.00 0.00 0.00 4.40
4467 4726 2.238646 CTCTAATTACCCACCACTGCCA 59.761 50.000 0.00 0.00 0.00 4.92
4468 4727 2.919228 CTCTAATTACCCACCACTGCC 58.081 52.381 0.00 0.00 0.00 4.85
4469 4728 2.289565 GCTCTAATTACCCACCACTGC 58.710 52.381 0.00 0.00 0.00 4.40
4470 4729 2.093658 ACGCTCTAATTACCCACCACTG 60.094 50.000 0.00 0.00 0.00 3.66
4471 4730 2.185387 ACGCTCTAATTACCCACCACT 58.815 47.619 0.00 0.00 0.00 4.00
4472 4731 2.685850 ACGCTCTAATTACCCACCAC 57.314 50.000 0.00 0.00 0.00 4.16
4473 4732 4.822685 TTAACGCTCTAATTACCCACCA 57.177 40.909 0.00 0.00 0.00 4.17
4474 4733 4.937015 TGTTTAACGCTCTAATTACCCACC 59.063 41.667 0.00 0.00 0.00 4.61
4475 4734 6.093082 ACATGTTTAACGCTCTAATTACCCAC 59.907 38.462 0.00 0.00 0.00 4.61
4476 4735 6.174760 ACATGTTTAACGCTCTAATTACCCA 58.825 36.000 0.00 0.00 0.00 4.51
4477 4736 6.673154 ACATGTTTAACGCTCTAATTACCC 57.327 37.500 0.00 0.00 0.00 3.69
4478 4737 7.483691 CCAAACATGTTTAACGCTCTAATTACC 59.516 37.037 22.87 0.00 0.00 2.85
4479 4738 8.019094 ACCAAACATGTTTAACGCTCTAATTAC 58.981 33.333 22.87 0.00 0.00 1.89
4480 4739 8.018520 CACCAAACATGTTTAACGCTCTAATTA 58.981 33.333 22.87 0.00 0.00 1.40
4481 4740 6.861055 CACCAAACATGTTTAACGCTCTAATT 59.139 34.615 22.87 0.00 0.00 1.40
4482 4741 6.378582 CACCAAACATGTTTAACGCTCTAAT 58.621 36.000 22.87 0.00 0.00 1.73
4483 4742 5.753744 CACCAAACATGTTTAACGCTCTAA 58.246 37.500 22.87 0.00 0.00 2.10
4484 4743 4.319911 GCACCAAACATGTTTAACGCTCTA 60.320 41.667 22.87 0.00 0.00 2.43
4485 4744 3.550030 GCACCAAACATGTTTAACGCTCT 60.550 43.478 22.87 0.00 0.00 4.09
4486 4745 2.724174 GCACCAAACATGTTTAACGCTC 59.276 45.455 22.87 7.44 0.00 5.03
4487 4746 2.360801 AGCACCAAACATGTTTAACGCT 59.639 40.909 22.87 23.59 0.00 5.07
4488 4747 2.724174 GAGCACCAAACATGTTTAACGC 59.276 45.455 22.87 22.01 0.00 4.84
4489 4748 3.958704 TGAGCACCAAACATGTTTAACG 58.041 40.909 22.87 15.18 0.00 3.18
4490 4749 5.105752 TGTTGAGCACCAAACATGTTTAAC 58.894 37.500 22.87 19.86 36.36 2.01
4491 4750 5.330455 TGTTGAGCACCAAACATGTTTAA 57.670 34.783 22.87 9.60 36.36 1.52
4492 4751 4.991153 TGTTGAGCACCAAACATGTTTA 57.009 36.364 22.87 3.58 36.36 2.01
4493 4752 3.883830 TGTTGAGCACCAAACATGTTT 57.116 38.095 18.13 18.13 36.36 2.83
4494 4753 4.121317 CAATGTTGAGCACCAAACATGTT 58.879 39.130 4.92 4.92 36.36 2.71
4495 4754 3.493002 CCAATGTTGAGCACCAAACATGT 60.493 43.478 0.00 0.00 36.36 3.21
4496 4755 3.061322 CCAATGTTGAGCACCAAACATG 58.939 45.455 2.08 0.00 36.36 3.21
4497 4756 2.964464 TCCAATGTTGAGCACCAAACAT 59.036 40.909 0.00 0.00 36.36 2.71
4498 4757 2.361757 CTCCAATGTTGAGCACCAAACA 59.638 45.455 0.00 0.00 36.36 2.83
4499 4758 2.863704 GCTCCAATGTTGAGCACCAAAC 60.864 50.000 7.35 0.00 41.24 2.93
4500 4759 1.340889 GCTCCAATGTTGAGCACCAAA 59.659 47.619 7.35 0.00 41.24 3.28
4501 4760 0.961019 GCTCCAATGTTGAGCACCAA 59.039 50.000 7.35 0.00 41.24 3.67
4502 4761 1.236616 CGCTCCAATGTTGAGCACCA 61.237 55.000 12.22 0.00 41.64 4.17
4503 4762 0.955428 TCGCTCCAATGTTGAGCACC 60.955 55.000 12.22 0.00 41.64 5.01
4504 4763 1.089920 ATCGCTCCAATGTTGAGCAC 58.910 50.000 12.22 0.00 41.64 4.40
4505 4764 1.825090 AATCGCTCCAATGTTGAGCA 58.175 45.000 12.22 1.02 41.64 4.26
4506 4765 2.162208 TCAAATCGCTCCAATGTTGAGC 59.838 45.455 2.24 2.24 38.48 4.26
4507 4766 4.161333 GTTCAAATCGCTCCAATGTTGAG 58.839 43.478 0.00 0.00 0.00 3.02
4508 4767 3.057596 GGTTCAAATCGCTCCAATGTTGA 60.058 43.478 0.00 0.00 0.00 3.18
4509 4768 3.244976 GGTTCAAATCGCTCCAATGTTG 58.755 45.455 0.00 0.00 0.00 3.33
4510 4769 2.095263 CGGTTCAAATCGCTCCAATGTT 60.095 45.455 0.00 0.00 0.00 2.71
4511 4770 1.468520 CGGTTCAAATCGCTCCAATGT 59.531 47.619 0.00 0.00 0.00 2.71
4512 4771 2.178474 CGGTTCAAATCGCTCCAATG 57.822 50.000 0.00 0.00 0.00 2.82
4520 4779 5.907197 ATGTTATCTAGCGGTTCAAATCG 57.093 39.130 0.00 0.00 35.16 3.34
4522 4781 9.950680 CAAATTATGTTATCTAGCGGTTCAAAT 57.049 29.630 0.00 0.00 0.00 2.32
4523 4782 9.168451 TCAAATTATGTTATCTAGCGGTTCAAA 57.832 29.630 0.00 0.00 0.00 2.69
4524 4783 8.725405 TCAAATTATGTTATCTAGCGGTTCAA 57.275 30.769 0.00 0.00 0.00 2.69
4525 4784 8.773645 CATCAAATTATGTTATCTAGCGGTTCA 58.226 33.333 0.00 0.00 0.00 3.18
4526 4785 8.230486 CCATCAAATTATGTTATCTAGCGGTTC 58.770 37.037 0.00 0.00 0.00 3.62
4527 4786 7.719633 ACCATCAAATTATGTTATCTAGCGGTT 59.280 33.333 0.00 0.00 0.00 4.44
4528 4787 7.224297 ACCATCAAATTATGTTATCTAGCGGT 58.776 34.615 0.00 0.00 0.00 5.68
4529 4788 7.411912 CGACCATCAAATTATGTTATCTAGCGG 60.412 40.741 0.00 0.00 0.00 5.52
4530 4789 7.328493 TCGACCATCAAATTATGTTATCTAGCG 59.672 37.037 0.00 0.00 0.00 4.26
4531 4790 8.534333 TCGACCATCAAATTATGTTATCTAGC 57.466 34.615 0.00 0.00 0.00 3.42
4532 4791 9.914131 TCTCGACCATCAAATTATGTTATCTAG 57.086 33.333 0.00 0.00 0.00 2.43
4534 4793 9.212641 CATCTCGACCATCAAATTATGTTATCT 57.787 33.333 0.00 0.00 0.00 1.98
4535 4794 8.446273 CCATCTCGACCATCAAATTATGTTATC 58.554 37.037 0.00 0.00 0.00 1.75
4536 4795 7.939039 ACCATCTCGACCATCAAATTATGTTAT 59.061 33.333 0.00 0.00 0.00 1.89
4537 4796 7.279615 ACCATCTCGACCATCAAATTATGTTA 58.720 34.615 0.00 0.00 0.00 2.41
4538 4797 6.122277 ACCATCTCGACCATCAAATTATGTT 58.878 36.000 0.00 0.00 0.00 2.71
4539 4798 5.684704 ACCATCTCGACCATCAAATTATGT 58.315 37.500 0.00 0.00 0.00 2.29
4540 4799 6.624352 AACCATCTCGACCATCAAATTATG 57.376 37.500 0.00 0.00 0.00 1.90
4541 4800 6.828273 TCAAACCATCTCGACCATCAAATTAT 59.172 34.615 0.00 0.00 0.00 1.28
4542 4801 6.176896 TCAAACCATCTCGACCATCAAATTA 58.823 36.000 0.00 0.00 0.00 1.40
4543 4802 5.009631 TCAAACCATCTCGACCATCAAATT 58.990 37.500 0.00 0.00 0.00 1.82
4544 4803 4.588899 TCAAACCATCTCGACCATCAAAT 58.411 39.130 0.00 0.00 0.00 2.32
4545 4804 4.014569 TCAAACCATCTCGACCATCAAA 57.985 40.909 0.00 0.00 0.00 2.69
4546 4805 3.694043 TCAAACCATCTCGACCATCAA 57.306 42.857 0.00 0.00 0.00 2.57
4547 4806 3.694043 TTCAAACCATCTCGACCATCA 57.306 42.857 0.00 0.00 0.00 3.07
4548 4807 4.272018 CAGATTCAAACCATCTCGACCATC 59.728 45.833 0.00 0.00 0.00 3.51
4549 4808 4.194640 CAGATTCAAACCATCTCGACCAT 58.805 43.478 0.00 0.00 0.00 3.55
4550 4809 3.599343 CAGATTCAAACCATCTCGACCA 58.401 45.455 0.00 0.00 0.00 4.02
4551 4810 2.352960 GCAGATTCAAACCATCTCGACC 59.647 50.000 0.00 0.00 0.00 4.79
4552 4811 2.352960 GGCAGATTCAAACCATCTCGAC 59.647 50.000 0.00 0.00 0.00 4.20
4553 4812 2.632377 GGCAGATTCAAACCATCTCGA 58.368 47.619 0.00 0.00 0.00 4.04
4554 4813 1.672881 GGGCAGATTCAAACCATCTCG 59.327 52.381 0.00 0.00 0.00 4.04
4555 4814 2.726821 TGGGCAGATTCAAACCATCTC 58.273 47.619 0.00 0.00 0.00 2.75
4556 4815 2.905415 TGGGCAGATTCAAACCATCT 57.095 45.000 0.00 0.00 0.00 2.90
4557 4816 4.186159 CAAATGGGCAGATTCAAACCATC 58.814 43.478 0.00 0.00 40.84 3.51
4558 4817 3.054948 CCAAATGGGCAGATTCAAACCAT 60.055 43.478 0.00 0.00 43.39 3.55
4559 4818 2.302445 CCAAATGGGCAGATTCAAACCA 59.698 45.455 0.00 0.00 35.39 3.67
4560 4819 2.976589 CCAAATGGGCAGATTCAAACC 58.023 47.619 0.00 0.00 0.00 3.27
4573 4832 8.940397 ATACCAATATAAGAAGACCCAAATGG 57.060 34.615 0.00 0.00 41.37 3.16
4611 4870 9.155975 GATCATAAATGCGGAAATAGTACATCT 57.844 33.333 0.00 0.00 0.00 2.90
4612 4871 8.110612 CGATCATAAATGCGGAAATAGTACATC 58.889 37.037 0.00 0.00 0.00 3.06
4613 4872 7.602644 ACGATCATAAATGCGGAAATAGTACAT 59.397 33.333 0.00 0.00 0.00 2.29
4777 5036 2.050144 ACTCCACAAGACCACACATCT 58.950 47.619 0.00 0.00 0.00 2.90
4899 5158 0.662619 GCTGCTTAGCACACACACAA 59.337 50.000 1.39 0.00 33.79 3.33
4900 5159 1.498043 CGCTGCTTAGCACACACACA 61.498 55.000 1.39 0.00 33.79 3.72
4901 5160 1.205064 CGCTGCTTAGCACACACAC 59.795 57.895 1.39 0.00 33.79 3.82
4902 5161 1.221466 GACGCTGCTTAGCACACACA 61.221 55.000 1.39 0.00 33.79 3.72
4903 5162 1.493311 GACGCTGCTTAGCACACAC 59.507 57.895 1.39 0.00 33.79 3.82
4924 5183 5.894393 TGGACCAACCATAAGAAAGTTGAAA 59.106 36.000 3.79 0.00 44.64 2.69
4958 5217 4.811024 TGGATTGACATTATTCTCTGCGAC 59.189 41.667 0.00 0.00 0.00 5.19
5546 5805 4.351131 AAACTCGAGAACAAAACCACAC 57.649 40.909 21.68 0.00 0.00 3.82
5579 5839 3.434641 CACTGTTGCAGAATCGAGACAAT 59.565 43.478 2.91 0.00 35.18 2.71
5709 5970 5.868801 GTGATCTTCAGAACAGGAAAGAGAG 59.131 44.000 0.00 0.00 0.00 3.20
5734 5995 3.857309 AACAGCTCAGGGTGCAGCC 62.857 63.158 27.66 27.66 43.94 4.85
5790 6052 5.600069 AGTAGCACCACTCTGATCATATTGA 59.400 40.000 0.00 0.00 0.00 2.57
5791 6053 5.695363 CAGTAGCACCACTCTGATCATATTG 59.305 44.000 0.00 0.00 0.00 1.90
5793 6055 4.282957 CCAGTAGCACCACTCTGATCATAT 59.717 45.833 0.00 0.00 0.00 1.78
5829 6091 3.967987 GGAGGGAGTAGTACATGGACATT 59.032 47.826 11.55 0.00 0.00 2.71
5841 6103 6.500589 TCTATTTTGGAATGGAGGGAGTAG 57.499 41.667 0.00 0.00 30.37 2.57
5842 6104 6.619437 TCATCTATTTTGGAATGGAGGGAGTA 59.381 38.462 0.00 0.00 36.39 2.59
5843 6105 5.433051 TCATCTATTTTGGAATGGAGGGAGT 59.567 40.000 0.00 0.00 36.39 3.85
5844 6106 5.767168 GTCATCTATTTTGGAATGGAGGGAG 59.233 44.000 0.00 0.00 36.39 4.30
5845 6107 5.433051 AGTCATCTATTTTGGAATGGAGGGA 59.567 40.000 0.00 0.00 36.39 4.20
5846 6108 5.699143 AGTCATCTATTTTGGAATGGAGGG 58.301 41.667 0.00 0.00 36.39 4.30
5847 6109 6.359804 TGAGTCATCTATTTTGGAATGGAGG 58.640 40.000 0.00 0.00 36.39 4.30
5848 6110 7.555554 AGTTGAGTCATCTATTTTGGAATGGAG 59.444 37.037 1.70 0.00 36.39 3.86
5849 6111 7.405292 AGTTGAGTCATCTATTTTGGAATGGA 58.595 34.615 1.70 0.00 37.20 3.41
5850 6112 7.636150 AGTTGAGTCATCTATTTTGGAATGG 57.364 36.000 1.70 0.00 0.00 3.16
5851 6113 9.350357 CAAAGTTGAGTCATCTATTTTGGAATG 57.650 33.333 4.14 0.00 35.65 2.67
5852 6114 9.082313 ACAAAGTTGAGTCATCTATTTTGGAAT 57.918 29.630 14.35 0.00 40.00 3.01
5853 6115 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
5854 6116 9.567776 TTACAAAGTTGAGTCATCTATTTTGGA 57.432 29.630 14.35 6.88 40.00 3.53
5862 6124 9.614792 ACTAACTTTTACAAAGTTGAGTCATCT 57.385 29.630 20.12 0.00 40.38 2.90
5879 6141 9.975218 AGATGACCCAACATTATACTAACTTTT 57.025 29.630 0.00 0.00 0.00 2.27
5890 6152 9.083422 TGTTTCAAAATAGATGACCCAACATTA 57.917 29.630 0.00 0.00 0.00 1.90
5891 6153 7.961351 TGTTTCAAAATAGATGACCCAACATT 58.039 30.769 0.00 0.00 0.00 2.71
5892 6154 7.451255 TCTGTTTCAAAATAGATGACCCAACAT 59.549 33.333 0.00 0.00 32.24 2.71
5893 6155 6.775142 TCTGTTTCAAAATAGATGACCCAACA 59.225 34.615 0.00 0.00 32.24 3.33
5894 6156 7.214467 TCTGTTTCAAAATAGATGACCCAAC 57.786 36.000 0.00 0.00 32.24 3.77
5895 6157 6.434028 CCTCTGTTTCAAAATAGATGACCCAA 59.566 38.462 2.91 0.00 35.92 4.12
5896 6158 5.945784 CCTCTGTTTCAAAATAGATGACCCA 59.054 40.000 2.91 0.00 35.92 4.51
5897 6159 5.358160 CCCTCTGTTTCAAAATAGATGACCC 59.642 44.000 2.91 0.00 35.92 4.46
5898 6160 6.180472 TCCCTCTGTTTCAAAATAGATGACC 58.820 40.000 2.91 0.00 35.92 4.02
5899 6161 6.881602 ACTCCCTCTGTTTCAAAATAGATGAC 59.118 38.462 2.91 0.00 35.92 3.06
5900 6162 7.020827 ACTCCCTCTGTTTCAAAATAGATGA 57.979 36.000 2.91 3.20 35.92 2.92
5901 6163 8.043710 AGTACTCCCTCTGTTTCAAAATAGATG 58.956 37.037 2.91 1.27 35.92 2.90
5902 6164 8.152023 AGTACTCCCTCTGTTTCAAAATAGAT 57.848 34.615 2.91 0.00 35.92 1.98
5903 6165 7.554959 AGTACTCCCTCTGTTTCAAAATAGA 57.445 36.000 0.00 2.56 35.32 1.98
5904 6166 8.097662 AGAAGTACTCCCTCTGTTTCAAAATAG 58.902 37.037 0.00 0.00 0.00 1.73
5905 6167 7.878127 CAGAAGTACTCCCTCTGTTTCAAAATA 59.122 37.037 12.94 0.00 0.00 1.40
5906 6168 6.712547 CAGAAGTACTCCCTCTGTTTCAAAAT 59.287 38.462 12.94 0.00 0.00 1.82
5907 6169 6.055588 CAGAAGTACTCCCTCTGTTTCAAAA 58.944 40.000 12.94 0.00 0.00 2.44
5908 6170 5.365605 TCAGAAGTACTCCCTCTGTTTCAAA 59.634 40.000 18.27 1.00 0.00 2.69
5909 6171 4.899457 TCAGAAGTACTCCCTCTGTTTCAA 59.101 41.667 18.27 1.58 0.00 2.69
5910 6172 4.480115 TCAGAAGTACTCCCTCTGTTTCA 58.520 43.478 18.27 1.88 0.00 2.69
5911 6173 5.470047 TTCAGAAGTACTCCCTCTGTTTC 57.530 43.478 18.27 1.05 0.00 2.78
5912 6174 5.046231 GGATTCAGAAGTACTCCCTCTGTTT 60.046 44.000 18.27 10.04 0.00 2.83
5913 6175 4.468153 GGATTCAGAAGTACTCCCTCTGTT 59.532 45.833 18.27 10.31 0.00 3.16
5914 6176 4.027437 GGATTCAGAAGTACTCCCTCTGT 58.973 47.826 18.27 4.91 0.00 3.41
5915 6177 4.099266 CAGGATTCAGAAGTACTCCCTCTG 59.901 50.000 14.44 14.44 0.00 3.35
5916 6178 4.017037 TCAGGATTCAGAAGTACTCCCTCT 60.017 45.833 0.00 0.00 0.00 3.69
5917 6179 4.282496 TCAGGATTCAGAAGTACTCCCTC 58.718 47.826 0.00 0.00 0.00 4.30
5918 6180 4.338795 TCAGGATTCAGAAGTACTCCCT 57.661 45.455 0.00 0.00 0.00 4.20
5919 6181 4.407296 ACATCAGGATTCAGAAGTACTCCC 59.593 45.833 0.00 0.00 0.00 4.30
5920 6182 5.355596 CACATCAGGATTCAGAAGTACTCC 58.644 45.833 0.00 0.00 0.00 3.85
5921 6183 4.808364 GCACATCAGGATTCAGAAGTACTC 59.192 45.833 0.00 0.00 0.00 2.59
5922 6184 4.223700 TGCACATCAGGATTCAGAAGTACT 59.776 41.667 0.00 0.00 0.00 2.73
5923 6185 4.507710 TGCACATCAGGATTCAGAAGTAC 58.492 43.478 0.00 0.00 0.00 2.73
6057 6319 4.630894 TCTTTGTCACAATCGCAAAACT 57.369 36.364 0.00 0.00 32.64 2.66
6104 6366 7.704789 TGTTGATATCTGTTCTTGATCGATG 57.295 36.000 0.54 0.00 0.00 3.84
6105 6367 7.765819 TGTTGTTGATATCTGTTCTTGATCGAT 59.234 33.333 0.00 0.00 0.00 3.59
6106 6368 7.096551 TGTTGTTGATATCTGTTCTTGATCGA 58.903 34.615 3.98 0.00 0.00 3.59
6107 6369 7.294676 TGTTGTTGATATCTGTTCTTGATCG 57.705 36.000 3.98 0.00 0.00 3.69
6108 6370 9.897744 TTTTGTTGTTGATATCTGTTCTTGATC 57.102 29.630 3.98 0.00 0.00 2.92
6110 6372 9.681692 CATTTTGTTGTTGATATCTGTTCTTGA 57.318 29.630 3.98 0.00 0.00 3.02
6144 6413 5.794687 TCATCAGTGGTTTAATAACAGCG 57.205 39.130 0.00 0.00 35.92 5.18
6188 6552 6.971726 TTACTGAGAGAACTGTTGGTCTAA 57.028 37.500 0.00 0.00 0.00 2.10
6332 6697 0.107456 CGCTGGAGAATACCATGGCT 59.893 55.000 13.04 0.00 39.34 4.75
6333 6698 0.886490 CCGCTGGAGAATACCATGGC 60.886 60.000 13.04 0.00 39.34 4.40
6383 6748 1.322442 GCCATTAACATCAGCCCTCC 58.678 55.000 0.00 0.00 0.00 4.30
6428 6794 0.302288 TTCACGTCAGTTTTTCCGCG 59.698 50.000 0.00 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.