Multiple sequence alignment - TraesCS2A01G303600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G303600 chr2A 100.000 2824 0 0 1 2824 520565325 520562502 0.000000e+00 5216.0
1 TraesCS2A01G303600 chr2A 93.617 47 2 1 2009 2054 520563270 520563224 5.050000e-08 69.4
2 TraesCS2A01G303600 chr2A 93.617 47 2 1 2056 2102 520563317 520563272 5.050000e-08 69.4
3 TraesCS2A01G303600 chr2D 96.040 606 19 3 2222 2824 385279493 385278890 0.000000e+00 981.0
4 TraesCS2A01G303600 chr2D 90.015 671 37 12 1407 2054 385280349 385279686 0.000000e+00 841.0
5 TraesCS2A01G303600 chr2D 94.530 457 20 3 908 1362 385280946 385280493 0.000000e+00 701.0
6 TraesCS2A01G303600 chr2D 89.744 507 42 7 25 524 160681457 160680954 8.530000e-180 640.0
7 TraesCS2A01G303600 chr2D 91.667 180 10 2 2047 2222 385279741 385279563 7.810000e-61 244.0
8 TraesCS2A01G303600 chr2B 92.952 525 28 4 933 1457 456178840 456178325 0.000000e+00 756.0
9 TraesCS2A01G303600 chr2B 89.858 562 37 9 1456 2013 456178247 456177702 0.000000e+00 704.0
10 TraesCS2A01G303600 chr2B 94.256 383 20 2 2442 2824 456177072 456176692 4.050000e-163 584.0
11 TraesCS2A01G303600 chr1B 90.514 506 40 5 31 529 256912327 256912831 0.000000e+00 662.0
12 TraesCS2A01G303600 chr1D 90.495 505 39 6 27 524 283421095 283421597 0.000000e+00 658.0
13 TraesCS2A01G303600 chr1D 89.921 506 42 6 30 528 365327428 365327931 0.000000e+00 643.0
14 TraesCS2A01G303600 chr1D 89.744 507 42 6 30 528 242067500 242068004 8.530000e-180 640.0
15 TraesCS2A01G303600 chr6A 90.543 497 42 4 29 524 347642664 347642172 0.000000e+00 652.0
16 TraesCS2A01G303600 chr7D 90.816 490 37 5 28 510 165967153 165966665 0.000000e+00 649.0
17 TraesCS2A01G303600 chr3D 90.278 504 37 8 30 524 312256228 312256728 0.000000e+00 649.0
18 TraesCS2A01G303600 chr4A 89.341 516 41 11 19 525 89956175 89955665 1.100000e-178 636.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G303600 chr2A 520562502 520565325 2823 True 1784.933333 5216 95.744667 1 2824 3 chr2A.!!$R1 2823
1 TraesCS2A01G303600 chr2D 385278890 385280946 2056 True 691.750000 981 93.063000 908 2824 4 chr2D.!!$R2 1916
2 TraesCS2A01G303600 chr2D 160680954 160681457 503 True 640.000000 640 89.744000 25 524 1 chr2D.!!$R1 499
3 TraesCS2A01G303600 chr2B 456176692 456178840 2148 True 681.333333 756 92.355333 933 2824 3 chr2B.!!$R1 1891
4 TraesCS2A01G303600 chr1B 256912327 256912831 504 False 662.000000 662 90.514000 31 529 1 chr1B.!!$F1 498
5 TraesCS2A01G303600 chr1D 283421095 283421597 502 False 658.000000 658 90.495000 27 524 1 chr1D.!!$F2 497
6 TraesCS2A01G303600 chr1D 365327428 365327931 503 False 643.000000 643 89.921000 30 528 1 chr1D.!!$F3 498
7 TraesCS2A01G303600 chr1D 242067500 242068004 504 False 640.000000 640 89.744000 30 528 1 chr1D.!!$F1 498
8 TraesCS2A01G303600 chr3D 312256228 312256728 500 False 649.000000 649 90.278000 30 524 1 chr3D.!!$F1 494
9 TraesCS2A01G303600 chr4A 89955665 89956175 510 True 636.000000 636 89.341000 19 525 1 chr4A.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 955 0.171455 TGGTCGCAACACCACAAAAC 59.829 50.0 0.0 0.0 41.84 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2143 0.096976 CGTCGCCATGGTTGATCAAC 59.903 55.0 27.16 27.16 40.45 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.479370 GCACCTGCTGTCATCGAC 58.521 61.111 0.00 0.00 38.21 4.20
18 19 1.079543 GCACCTGCTGTCATCGACT 60.080 57.895 0.00 0.00 38.21 4.18
19 20 0.671781 GCACCTGCTGTCATCGACTT 60.672 55.000 0.00 0.00 38.21 3.01
20 21 1.404181 GCACCTGCTGTCATCGACTTA 60.404 52.381 0.00 0.00 38.21 2.24
21 22 2.739932 GCACCTGCTGTCATCGACTTAT 60.740 50.000 0.00 0.00 38.21 1.73
22 23 3.490933 GCACCTGCTGTCATCGACTTATA 60.491 47.826 0.00 0.00 38.21 0.98
23 24 4.797604 GCACCTGCTGTCATCGACTTATAT 60.798 45.833 0.00 0.00 38.21 0.86
24 25 5.292765 CACCTGCTGTCATCGACTTATATT 58.707 41.667 0.00 0.00 33.15 1.28
25 26 5.755375 CACCTGCTGTCATCGACTTATATTT 59.245 40.000 0.00 0.00 33.15 1.40
26 27 6.258727 CACCTGCTGTCATCGACTTATATTTT 59.741 38.462 0.00 0.00 33.15 1.82
27 28 6.258727 ACCTGCTGTCATCGACTTATATTTTG 59.741 38.462 0.00 0.00 33.15 2.44
28 29 6.258727 CCTGCTGTCATCGACTTATATTTTGT 59.741 38.462 0.00 0.00 33.15 2.83
179 182 7.335924 TCGGAAAAATGGTATCTCGAGAATTTT 59.664 33.333 20.91 21.34 0.00 1.82
184 187 7.891183 AATGGTATCTCGAGAATTTTATCGG 57.109 36.000 20.91 0.00 41.76 4.18
188 191 7.652105 TGGTATCTCGAGAATTTTATCGGAAAG 59.348 37.037 20.91 0.00 41.76 2.62
206 209 7.661968 TCGGAAAGAATGATATCTCGAGAAAT 58.338 34.615 20.91 6.49 0.00 2.17
318 327 3.181440 TGCCAGATTGTTCCAGAGACTTT 60.181 43.478 0.00 0.00 0.00 2.66
319 328 3.823304 GCCAGATTGTTCCAGAGACTTTT 59.177 43.478 0.00 0.00 0.00 2.27
348 358 1.202794 TGCTCAGCAATGAGGTTGTGA 60.203 47.619 0.00 0.00 40.07 3.58
370 380 5.011840 TGAGAGATAAGGATGAATGAGGCAG 59.988 44.000 0.00 0.00 0.00 4.85
390 400 4.780815 CAGGGCCTTATCTGTAAATGTGA 58.219 43.478 1.32 0.00 0.00 3.58
392 402 5.829924 CAGGGCCTTATCTGTAAATGTGAAT 59.170 40.000 1.32 0.00 0.00 2.57
403 413 5.423886 TGTAAATGTGAATAGATGTGCGGA 58.576 37.500 0.00 0.00 0.00 5.54
422 432 8.085296 TGTGCGGATATCTTTTGTAAAATTGTT 58.915 29.630 2.05 0.00 0.00 2.83
476 486 9.445878 AGATCGAACGGTCTATATTACAAGATA 57.554 33.333 8.25 0.00 0.00 1.98
480 490 9.752274 CGAACGGTCTATATTACAAGATAGTAC 57.248 37.037 0.00 0.00 33.20 2.73
495 505 8.090831 ACAAGATAGTACGCACATCATTATCAT 58.909 33.333 0.00 0.00 0.00 2.45
503 514 4.445385 CGCACATCATTATCATCAACTCGA 59.555 41.667 0.00 0.00 0.00 4.04
551 562 5.033326 CAATTTTGCTTTATTTTGCGCCT 57.967 34.783 4.18 0.00 0.00 5.52
552 563 4.926860 ATTTTGCTTTATTTTGCGCCTC 57.073 36.364 4.18 0.00 0.00 4.70
553 564 2.362169 TTGCTTTATTTTGCGCCTCC 57.638 45.000 4.18 0.00 0.00 4.30
554 565 1.544724 TGCTTTATTTTGCGCCTCCT 58.455 45.000 4.18 0.00 0.00 3.69
555 566 1.892474 TGCTTTATTTTGCGCCTCCTT 59.108 42.857 4.18 0.00 0.00 3.36
556 567 2.262211 GCTTTATTTTGCGCCTCCTTG 58.738 47.619 4.18 0.00 0.00 3.61
557 568 2.879826 CTTTATTTTGCGCCTCCTTGG 58.120 47.619 4.18 0.00 39.35 3.61
558 569 1.181786 TTATTTTGCGCCTCCTTGGG 58.818 50.000 4.18 0.00 36.00 4.12
565 576 4.684134 GCCTCCTTGGGCCAAGCA 62.684 66.667 35.76 24.54 45.92 3.91
566 577 2.118076 CCTCCTTGGGCCAAGCAA 59.882 61.111 35.76 25.12 39.85 3.91
567 578 1.980772 CCTCCTTGGGCCAAGCAAG 60.981 63.158 35.76 30.91 39.85 4.01
568 579 1.228675 CTCCTTGGGCCAAGCAAGT 60.229 57.895 35.76 0.00 39.85 3.16
569 580 1.228552 TCCTTGGGCCAAGCAAGTC 60.229 57.895 35.76 0.00 39.85 3.01
570 581 1.531365 CCTTGGGCCAAGCAAGTCA 60.531 57.895 35.76 5.37 39.85 3.41
571 582 0.901580 CCTTGGGCCAAGCAAGTCAT 60.902 55.000 35.76 0.00 39.85 3.06
572 583 0.245539 CTTGGGCCAAGCAAGTCATG 59.754 55.000 31.72 7.65 34.63 3.07
573 584 0.469705 TTGGGCCAAGCAAGTCATGT 60.470 50.000 16.66 0.00 0.00 3.21
574 585 0.895100 TGGGCCAAGCAAGTCATGTC 60.895 55.000 2.13 0.00 0.00 3.06
575 586 0.895100 GGGCCAAGCAAGTCATGTCA 60.895 55.000 4.39 0.00 0.00 3.58
576 587 1.180029 GGCCAAGCAAGTCATGTCAT 58.820 50.000 0.00 0.00 0.00 3.06
577 588 2.368439 GGCCAAGCAAGTCATGTCATA 58.632 47.619 0.00 0.00 0.00 2.15
578 589 2.098117 GGCCAAGCAAGTCATGTCATAC 59.902 50.000 0.00 0.00 0.00 2.39
579 590 3.012518 GCCAAGCAAGTCATGTCATACT 58.987 45.455 0.00 0.00 0.00 2.12
580 591 4.191544 GCCAAGCAAGTCATGTCATACTA 58.808 43.478 0.00 0.00 0.00 1.82
581 592 4.635765 GCCAAGCAAGTCATGTCATACTAA 59.364 41.667 0.00 0.00 0.00 2.24
582 593 5.447818 GCCAAGCAAGTCATGTCATACTAAC 60.448 44.000 0.00 0.00 0.00 2.34
583 594 5.877012 CCAAGCAAGTCATGTCATACTAACT 59.123 40.000 0.00 0.00 0.00 2.24
584 595 7.041721 CCAAGCAAGTCATGTCATACTAACTA 58.958 38.462 0.00 0.00 0.00 2.24
585 596 7.549134 CCAAGCAAGTCATGTCATACTAACTAA 59.451 37.037 0.00 0.00 0.00 2.24
586 597 8.383619 CAAGCAAGTCATGTCATACTAACTAAC 58.616 37.037 0.00 0.00 0.00 2.34
587 598 7.611770 AGCAAGTCATGTCATACTAACTAACA 58.388 34.615 0.00 0.00 0.00 2.41
588 599 8.094548 AGCAAGTCATGTCATACTAACTAACAA 58.905 33.333 0.00 0.00 0.00 2.83
589 600 8.169268 GCAAGTCATGTCATACTAACTAACAAC 58.831 37.037 0.00 0.00 0.00 3.32
590 601 9.424319 CAAGTCATGTCATACTAACTAACAACT 57.576 33.333 0.00 0.00 0.00 3.16
591 602 9.998106 AAGTCATGTCATACTAACTAACAACTT 57.002 29.630 0.00 0.00 0.00 2.66
594 605 9.563898 TCATGTCATACTAACTAACAACTTACG 57.436 33.333 0.00 0.00 0.00 3.18
595 606 9.563898 CATGTCATACTAACTAACAACTTACGA 57.436 33.333 0.00 0.00 0.00 3.43
597 608 9.563898 TGTCATACTAACTAACAACTTACGATG 57.436 33.333 0.00 0.00 0.00 3.84
598 609 9.778993 GTCATACTAACTAACAACTTACGATGA 57.221 33.333 0.00 0.00 0.00 2.92
602 613 8.475331 ACTAACTAACAACTTACGATGAATGG 57.525 34.615 0.00 0.00 0.00 3.16
603 614 8.092687 ACTAACTAACAACTTACGATGAATGGT 58.907 33.333 0.00 0.00 0.00 3.55
604 615 7.739498 AACTAACAACTTACGATGAATGGTT 57.261 32.000 0.00 0.00 0.00 3.67
605 616 8.836268 AACTAACAACTTACGATGAATGGTTA 57.164 30.769 0.00 0.00 0.00 2.85
606 617 8.836268 ACTAACAACTTACGATGAATGGTTAA 57.164 30.769 0.00 0.00 0.00 2.01
607 618 8.932791 ACTAACAACTTACGATGAATGGTTAAG 58.067 33.333 0.00 0.00 0.00 1.85
608 619 7.972832 AACAACTTACGATGAATGGTTAAGA 57.027 32.000 0.00 0.00 0.00 2.10
609 620 7.596749 ACAACTTACGATGAATGGTTAAGAG 57.403 36.000 0.00 0.00 0.00 2.85
610 621 7.383687 ACAACTTACGATGAATGGTTAAGAGA 58.616 34.615 0.00 0.00 0.00 3.10
611 622 7.876068 ACAACTTACGATGAATGGTTAAGAGAA 59.124 33.333 0.00 0.00 0.00 2.87
612 623 8.383619 CAACTTACGATGAATGGTTAAGAGAAG 58.616 37.037 0.00 0.00 0.00 2.85
613 624 7.837863 ACTTACGATGAATGGTTAAGAGAAGA 58.162 34.615 0.00 0.00 0.00 2.87
614 625 8.478877 ACTTACGATGAATGGTTAAGAGAAGAT 58.521 33.333 0.00 0.00 0.00 2.40
615 626 9.967346 CTTACGATGAATGGTTAAGAGAAGATA 57.033 33.333 0.00 0.00 0.00 1.98
618 629 9.838339 ACGATGAATGGTTAAGAGAAGATATTT 57.162 29.630 0.00 0.00 0.00 1.40
625 636 8.662781 TGGTTAAGAGAAGATATTTTCATCCG 57.337 34.615 8.56 0.00 0.00 4.18
626 637 8.265055 TGGTTAAGAGAAGATATTTTCATCCGT 58.735 33.333 8.56 0.00 0.00 4.69
627 638 8.766151 GGTTAAGAGAAGATATTTTCATCCGTC 58.234 37.037 8.56 0.00 0.00 4.79
628 639 9.314321 GTTAAGAGAAGATATTTTCATCCGTCA 57.686 33.333 8.56 0.00 0.00 4.35
629 640 9.534565 TTAAGAGAAGATATTTTCATCCGTCAG 57.465 33.333 8.56 0.00 0.00 3.51
630 641 7.353414 AGAGAAGATATTTTCATCCGTCAGA 57.647 36.000 8.56 0.00 0.00 3.27
631 642 7.432869 AGAGAAGATATTTTCATCCGTCAGAG 58.567 38.462 8.56 0.00 0.00 3.35
632 643 7.069331 AGAGAAGATATTTTCATCCGTCAGAGT 59.931 37.037 8.56 0.00 0.00 3.24
633 644 7.560368 AGAAGATATTTTCATCCGTCAGAGTT 58.440 34.615 8.56 0.00 0.00 3.01
634 645 8.043710 AGAAGATATTTTCATCCGTCAGAGTTT 58.956 33.333 8.56 0.00 0.00 2.66
635 646 9.314321 GAAGATATTTTCATCCGTCAGAGTTTA 57.686 33.333 1.22 0.00 0.00 2.01
636 647 9.667107 AAGATATTTTCATCCGTCAGAGTTTAA 57.333 29.630 0.00 0.00 0.00 1.52
637 648 9.319143 AGATATTTTCATCCGTCAGAGTTTAAG 57.681 33.333 0.00 0.00 0.00 1.85
638 649 9.099454 GATATTTTCATCCGTCAGAGTTTAAGT 57.901 33.333 0.00 0.00 0.00 2.24
641 652 8.842358 TTTTCATCCGTCAGAGTTTAAGTATT 57.158 30.769 0.00 0.00 0.00 1.89
642 653 9.932207 TTTTCATCCGTCAGAGTTTAAGTATTA 57.068 29.630 0.00 0.00 0.00 0.98
643 654 9.582431 TTTCATCCGTCAGAGTTTAAGTATTAG 57.418 33.333 0.00 0.00 0.00 1.73
644 655 8.515695 TCATCCGTCAGAGTTTAAGTATTAGA 57.484 34.615 0.00 0.00 0.00 2.10
645 656 8.404000 TCATCCGTCAGAGTTTAAGTATTAGAC 58.596 37.037 0.00 0.00 36.04 2.59
647 658 8.345724 TCCGTCAGAGTTTAAGTATTAGACTT 57.654 34.615 0.00 0.00 44.86 3.01
648 659 8.242053 TCCGTCAGAGTTTAAGTATTAGACTTG 58.758 37.037 2.17 0.00 44.86 3.16
649 660 8.242053 CCGTCAGAGTTTAAGTATTAGACTTGA 58.758 37.037 2.17 0.00 44.86 3.02
650 661 9.063739 CGTCAGAGTTTAAGTATTAGACTTGAC 57.936 37.037 2.17 15.66 44.86 3.18
651 662 9.909644 GTCAGAGTTTAAGTATTAGACTTGACA 57.090 33.333 17.94 0.00 44.86 3.58
701 712 8.641499 ATTTCAAACATTTTAACGATGTGTGT 57.359 26.923 15.74 1.58 41.43 3.72
702 713 8.467402 TTTCAAACATTTTAACGATGTGTGTT 57.533 26.923 15.74 2.78 41.43 3.32
703 714 8.467402 TTCAAACATTTTAACGATGTGTGTTT 57.533 26.923 15.74 0.00 41.43 2.83
704 715 9.569167 TTCAAACATTTTAACGATGTGTGTTTA 57.431 25.926 15.74 5.84 41.43 2.01
705 716 9.227490 TCAAACATTTTAACGATGTGTGTTTAG 57.773 29.630 15.74 0.00 41.43 1.85
706 717 9.015577 CAAACATTTTAACGATGTGTGTTTAGT 57.984 29.630 10.96 0.00 37.75 2.24
707 718 8.555166 AACATTTTAACGATGTGTGTTTAGTG 57.445 30.769 4.82 0.00 37.76 2.74
708 719 7.921787 ACATTTTAACGATGTGTGTTTAGTGA 58.078 30.769 0.00 0.00 36.43 3.41
709 720 8.067784 ACATTTTAACGATGTGTGTTTAGTGAG 58.932 33.333 0.00 0.00 36.43 3.51
710 721 7.542534 TTTTAACGATGTGTGTTTAGTGAGT 57.457 32.000 0.00 0.00 0.00 3.41
711 722 8.645730 TTTTAACGATGTGTGTTTAGTGAGTA 57.354 30.769 0.00 0.00 0.00 2.59
712 723 7.862741 TTAACGATGTGTGTTTAGTGAGTAG 57.137 36.000 0.00 0.00 0.00 2.57
713 724 4.806330 ACGATGTGTGTTTAGTGAGTAGG 58.194 43.478 0.00 0.00 0.00 3.18
714 725 4.521639 ACGATGTGTGTTTAGTGAGTAGGA 59.478 41.667 0.00 0.00 0.00 2.94
715 726 5.010314 ACGATGTGTGTTTAGTGAGTAGGAA 59.990 40.000 0.00 0.00 0.00 3.36
716 727 5.345202 CGATGTGTGTTTAGTGAGTAGGAAC 59.655 44.000 0.00 0.00 0.00 3.62
717 728 5.864418 TGTGTGTTTAGTGAGTAGGAACT 57.136 39.130 0.00 0.00 46.37 3.01
718 729 6.229936 TGTGTGTTTAGTGAGTAGGAACTT 57.770 37.500 0.00 0.00 41.75 2.66
719 730 6.646267 TGTGTGTTTAGTGAGTAGGAACTTT 58.354 36.000 0.00 0.00 41.75 2.66
720 731 7.107542 TGTGTGTTTAGTGAGTAGGAACTTTT 58.892 34.615 0.00 0.00 41.75 2.27
721 732 7.608761 TGTGTGTTTAGTGAGTAGGAACTTTTT 59.391 33.333 0.00 0.00 41.75 1.94
722 733 8.121086 GTGTGTTTAGTGAGTAGGAACTTTTTC 58.879 37.037 0.00 0.00 41.75 2.29
723 734 7.825270 TGTGTTTAGTGAGTAGGAACTTTTTCA 59.175 33.333 0.00 0.00 41.75 2.69
724 735 8.837389 GTGTTTAGTGAGTAGGAACTTTTTCAT 58.163 33.333 0.00 0.00 41.75 2.57
725 736 9.052759 TGTTTAGTGAGTAGGAACTTTTTCATC 57.947 33.333 0.00 0.00 41.75 2.92
726 737 9.052759 GTTTAGTGAGTAGGAACTTTTTCATCA 57.947 33.333 0.00 0.00 41.75 3.07
727 738 9.621629 TTTAGTGAGTAGGAACTTTTTCATCAA 57.378 29.630 0.00 0.00 41.75 2.57
728 739 7.497925 AGTGAGTAGGAACTTTTTCATCAAC 57.502 36.000 0.00 0.00 41.75 3.18
729 740 7.283329 AGTGAGTAGGAACTTTTTCATCAACT 58.717 34.615 0.00 0.00 41.75 3.16
730 741 8.429641 AGTGAGTAGGAACTTTTTCATCAACTA 58.570 33.333 0.00 0.00 41.75 2.24
731 742 9.220767 GTGAGTAGGAACTTTTTCATCAACTAT 57.779 33.333 0.00 0.00 41.75 2.12
732 743 9.219603 TGAGTAGGAACTTTTTCATCAACTATG 57.780 33.333 0.00 0.00 41.75 2.23
733 744 9.436957 GAGTAGGAACTTTTTCATCAACTATGA 57.563 33.333 0.00 0.00 40.86 2.15
734 745 9.793259 AGTAGGAACTTTTTCATCAACTATGAA 57.207 29.630 0.00 0.00 45.76 2.57
770 781 7.552458 TGATTTTATCATAACGATGTGTGCT 57.448 32.000 0.00 0.00 35.39 4.40
771 782 7.984391 TGATTTTATCATAACGATGTGTGCTT 58.016 30.769 0.00 0.00 35.39 3.91
772 783 9.103861 TGATTTTATCATAACGATGTGTGCTTA 57.896 29.630 0.00 0.00 35.39 3.09
773 784 9.586150 GATTTTATCATAACGATGTGTGCTTAG 57.414 33.333 0.00 0.00 35.39 2.18
774 785 8.487313 TTTTATCATAACGATGTGTGCTTAGT 57.513 30.769 0.00 0.00 35.39 2.24
775 786 5.973651 ATCATAACGATGTGTGCTTAGTG 57.026 39.130 0.00 0.00 34.41 2.74
776 787 5.066968 TCATAACGATGTGTGCTTAGTGA 57.933 39.130 0.00 0.00 34.41 3.41
777 788 5.474825 TCATAACGATGTGTGCTTAGTGAA 58.525 37.500 0.00 0.00 34.41 3.18
778 789 5.929415 TCATAACGATGTGTGCTTAGTGAAA 59.071 36.000 0.00 0.00 34.41 2.69
779 790 4.732285 AACGATGTGTGCTTAGTGAAAG 57.268 40.909 0.00 0.00 38.32 2.62
780 791 3.067106 ACGATGTGTGCTTAGTGAAAGG 58.933 45.455 0.00 0.00 35.58 3.11
781 792 2.416547 CGATGTGTGCTTAGTGAAAGGG 59.583 50.000 0.00 0.00 35.58 3.95
782 793 2.270352 TGTGTGCTTAGTGAAAGGGG 57.730 50.000 0.00 0.00 35.58 4.79
783 794 1.771854 TGTGTGCTTAGTGAAAGGGGA 59.228 47.619 0.00 0.00 35.58 4.81
784 795 2.152016 GTGTGCTTAGTGAAAGGGGAC 58.848 52.381 0.00 0.00 35.58 4.46
800 811 3.705072 AGGGGACTTTTCCATCTACTACG 59.295 47.826 0.00 0.00 44.98 3.51
801 812 3.703052 GGGGACTTTTCCATCTACTACGA 59.297 47.826 0.00 0.00 44.98 3.43
802 813 4.161001 GGGGACTTTTCCATCTACTACGAA 59.839 45.833 0.00 0.00 44.98 3.85
803 814 5.337813 GGGGACTTTTCCATCTACTACGAAA 60.338 44.000 0.00 0.00 44.98 3.46
804 815 6.168389 GGGACTTTTCCATCTACTACGAAAA 58.832 40.000 0.00 0.00 44.98 2.29
805 816 6.091849 GGGACTTTTCCATCTACTACGAAAAC 59.908 42.308 0.00 0.00 44.98 2.43
806 817 6.647895 GGACTTTTCCATCTACTACGAAAACA 59.352 38.462 0.00 0.00 42.30 2.83
807 818 7.333672 GGACTTTTCCATCTACTACGAAAACAT 59.666 37.037 0.00 0.00 42.30 2.71
808 819 9.362539 GACTTTTCCATCTACTACGAAAACATA 57.637 33.333 0.00 0.00 32.40 2.29
809 820 9.886132 ACTTTTCCATCTACTACGAAAACATAT 57.114 29.630 0.00 0.00 32.40 1.78
812 823 9.454585 TTTCCATCTACTACGAAAACATATACG 57.545 33.333 0.00 0.00 0.00 3.06
813 824 8.382030 TCCATCTACTACGAAAACATATACGA 57.618 34.615 0.00 0.00 0.00 3.43
814 825 9.006839 TCCATCTACTACGAAAACATATACGAT 57.993 33.333 0.00 0.00 0.00 3.73
815 826 9.062674 CCATCTACTACGAAAACATATACGATG 57.937 37.037 0.00 0.00 0.00 3.84
816 827 9.821662 CATCTACTACGAAAACATATACGATGA 57.178 33.333 0.00 0.00 0.00 2.92
817 828 9.823098 ATCTACTACGAAAACATATACGATGAC 57.177 33.333 0.00 0.00 0.00 3.06
818 829 9.049523 TCTACTACGAAAACATATACGATGACT 57.950 33.333 0.00 0.00 0.00 3.41
819 830 9.661187 CTACTACGAAAACATATACGATGACTT 57.339 33.333 0.00 0.00 0.00 3.01
842 853 9.193133 ACTTATCGATCTCAAAATTATGTACGG 57.807 33.333 0.00 0.00 0.00 4.02
843 854 9.406828 CTTATCGATCTCAAAATTATGTACGGA 57.593 33.333 0.00 0.00 0.00 4.69
844 855 9.923143 TTATCGATCTCAAAATTATGTACGGAT 57.077 29.630 0.00 0.00 0.00 4.18
845 856 8.833231 ATCGATCTCAAAATTATGTACGGATT 57.167 30.769 0.00 0.00 0.00 3.01
846 857 8.294341 TCGATCTCAAAATTATGTACGGATTC 57.706 34.615 0.00 0.00 0.00 2.52
847 858 7.923878 TCGATCTCAAAATTATGTACGGATTCA 59.076 33.333 0.00 0.00 0.00 2.57
848 859 8.547894 CGATCTCAAAATTATGTACGGATTCAA 58.452 33.333 0.00 0.00 0.00 2.69
851 862 9.613428 TCTCAAAATTATGTACGGATTCAATCT 57.387 29.630 0.00 0.00 0.00 2.40
852 863 9.869844 CTCAAAATTATGTACGGATTCAATCTC 57.130 33.333 0.00 0.00 0.00 2.75
853 864 9.613428 TCAAAATTATGTACGGATTCAATCTCT 57.387 29.630 0.00 0.00 0.00 3.10
854 865 9.655769 CAAAATTATGTACGGATTCAATCTCTG 57.344 33.333 0.00 0.00 0.00 3.35
855 866 9.613428 AAAATTATGTACGGATTCAATCTCTGA 57.387 29.630 0.00 0.00 0.00 3.27
856 867 8.824159 AATTATGTACGGATTCAATCTCTGAG 57.176 34.615 0.00 0.00 34.81 3.35
857 868 7.582667 TTATGTACGGATTCAATCTCTGAGA 57.417 36.000 10.23 10.23 34.81 3.27
858 869 6.662865 ATGTACGGATTCAATCTCTGAGAT 57.337 37.500 14.31 14.31 36.28 2.75
859 870 5.836347 TGTACGGATTCAATCTCTGAGATG 58.164 41.667 20.20 13.95 34.65 2.90
860 871 5.360999 TGTACGGATTCAATCTCTGAGATGT 59.639 40.000 20.20 13.69 34.65 3.06
861 872 4.691175 ACGGATTCAATCTCTGAGATGTG 58.309 43.478 20.20 18.12 34.65 3.21
862 873 3.493877 CGGATTCAATCTCTGAGATGTGC 59.506 47.826 20.20 11.14 34.65 4.57
863 874 4.706035 GGATTCAATCTCTGAGATGTGCT 58.294 43.478 20.20 6.82 34.65 4.40
864 875 4.751098 GGATTCAATCTCTGAGATGTGCTC 59.249 45.833 20.20 14.07 44.21 4.26
877 888 3.420397 GTGCTCGTAAGGACAGGAC 57.580 57.895 0.00 0.00 42.95 3.85
878 889 0.456312 GTGCTCGTAAGGACAGGACG 60.456 60.000 0.00 0.00 42.95 4.79
879 890 0.892358 TGCTCGTAAGGACAGGACGT 60.892 55.000 0.00 0.00 37.81 4.34
880 891 0.456312 GCTCGTAAGGACAGGACGTG 60.456 60.000 0.00 0.00 37.81 4.49
881 892 0.456312 CTCGTAAGGACAGGACGTGC 60.456 60.000 0.00 0.00 37.81 5.34
882 893 1.800315 CGTAAGGACAGGACGTGCG 60.800 63.158 0.00 0.00 41.69 5.34
883 894 1.288127 GTAAGGACAGGACGTGCGT 59.712 57.895 0.00 2.57 41.69 5.24
884 895 1.007336 GTAAGGACAGGACGTGCGTG 61.007 60.000 8.98 7.05 41.69 5.34
886 897 2.971428 AAGGACAGGACGTGCGTGTG 62.971 60.000 14.69 5.24 44.95 3.82
887 898 3.702555 GACAGGACGTGCGTGTGC 61.703 66.667 14.69 5.57 44.95 4.57
899 910 3.952675 GTGTGCGCTGGGTGTGTG 61.953 66.667 9.73 0.00 0.00 3.82
900 911 4.481617 TGTGCGCTGGGTGTGTGT 62.482 61.111 9.73 0.00 0.00 3.72
901 912 2.280524 GTGCGCTGGGTGTGTGTA 60.281 61.111 9.73 0.00 0.00 2.90
902 913 1.671054 GTGCGCTGGGTGTGTGTAT 60.671 57.895 9.73 0.00 0.00 2.29
903 914 1.670730 TGCGCTGGGTGTGTGTATG 60.671 57.895 9.73 0.00 0.00 2.39
904 915 1.671054 GCGCTGGGTGTGTGTATGT 60.671 57.895 0.00 0.00 0.00 2.29
905 916 0.390603 GCGCTGGGTGTGTGTATGTA 60.391 55.000 0.00 0.00 0.00 2.29
906 917 1.742411 GCGCTGGGTGTGTGTATGTAT 60.742 52.381 0.00 0.00 0.00 2.29
925 936 5.294356 TGTATAAAAACTGACGCACTCACT 58.706 37.500 0.00 0.00 0.00 3.41
943 954 0.453793 CTGGTCGCAACACCACAAAA 59.546 50.000 0.00 0.00 41.84 2.44
944 955 0.171455 TGGTCGCAACACCACAAAAC 59.829 50.000 0.00 0.00 41.84 2.43
946 957 1.544686 GTCGCAACACCACAAAACAG 58.455 50.000 0.00 0.00 0.00 3.16
959 971 7.132213 CACCACAAAACAGAATACTTGTACAG 58.868 38.462 0.00 0.00 31.00 2.74
985 997 6.789877 CCAAAAGAAAACAAAAACACGAACAG 59.210 34.615 0.00 0.00 0.00 3.16
1352 1365 0.111446 TGCCCCGAAGACCAAATCAA 59.889 50.000 0.00 0.00 0.00 2.57
1378 1391 4.261888 CCGTGAGTTTCTCGGTGG 57.738 61.111 10.48 0.00 45.39 4.61
1380 1393 0.666577 CCGTGAGTTTCTCGGTGGTC 60.667 60.000 10.48 0.00 45.39 4.02
1382 1395 1.784525 GTGAGTTTCTCGGTGGTCAG 58.215 55.000 0.00 0.00 32.35 3.51
1394 1407 2.801699 CGGTGGTCAGCGCTAAATGATA 60.802 50.000 10.99 0.00 45.38 2.15
1517 1740 7.470563 GCGATTCAAGATTTAGGGGATTTGATT 60.471 37.037 0.00 0.00 0.00 2.57
1518 1741 7.864379 CGATTCAAGATTTAGGGGATTTGATTG 59.136 37.037 0.00 0.00 0.00 2.67
1519 1742 8.843308 ATTCAAGATTTAGGGGATTTGATTGA 57.157 30.769 0.00 0.00 0.00 2.57
1520 1743 8.663209 TTCAAGATTTAGGGGATTTGATTGAA 57.337 30.769 0.00 0.00 32.32 2.69
1524 1747 8.298729 AGATTTAGGGGATTTGATTGAACTTC 57.701 34.615 0.00 0.00 0.00 3.01
1551 1774 2.023673 TCAGCATTTTTATCTGGGCCG 58.976 47.619 0.00 0.00 0.00 6.13
1563 1786 1.003839 TGGGCCGTAACTTCAGCTG 60.004 57.895 7.63 7.63 0.00 4.24
1637 1861 3.726730 GCTAATAGTTCTTCAGCTCGTCG 59.273 47.826 0.00 0.00 0.00 5.12
1655 1879 3.002149 CGTCGCAAAACAAGTTGTTGAAG 60.002 43.478 21.53 14.66 40.14 3.02
1665 1889 2.733956 AGTTGTTGAAGTGCTTGGGAA 58.266 42.857 0.00 0.00 0.00 3.97
1695 1926 9.611284 CAATCGTCTCAACATTTTTATTCTTCA 57.389 29.630 0.00 0.00 0.00 3.02
1824 2056 1.406069 GCACCAGCAGTAGCATGTAGT 60.406 52.381 0.00 0.00 45.49 2.73
1825 2057 2.159099 GCACCAGCAGTAGCATGTAGTA 60.159 50.000 0.00 0.00 45.49 1.82
1826 2058 3.711086 CACCAGCAGTAGCATGTAGTAG 58.289 50.000 0.00 0.00 45.49 2.57
1869 2101 0.395586 TCAAAAGCTGTGGGTGTGCT 60.396 50.000 0.00 0.00 38.87 4.40
1872 2104 0.820891 AAAGCTGTGGGTGTGCTCAG 60.821 55.000 0.00 0.00 35.85 3.35
1950 2182 1.906105 CGCCCCTTGTAAGCCCTACA 61.906 60.000 0.00 0.00 38.81 2.74
2000 2232 4.031418 TGGCATTCATGTAAAAGCATCG 57.969 40.909 0.00 0.00 0.00 3.84
2018 2250 2.363807 GAGCAGTCGATGTGGAACG 58.636 57.895 0.00 0.00 42.39 3.95
2019 2251 1.687494 GAGCAGTCGATGTGGAACGC 61.687 60.000 0.00 0.00 42.39 4.84
2020 2252 3.071459 GCAGTCGATGTGGAACGCG 62.071 63.158 3.53 3.53 45.01 6.01
2021 2253 1.443702 CAGTCGATGTGGAACGCGA 60.444 57.895 15.93 0.00 45.01 5.87
2022 2254 1.006825 CAGTCGATGTGGAACGCGAA 61.007 55.000 15.93 0.00 45.27 4.70
2023 2255 0.319211 AGTCGATGTGGAACGCGAAA 60.319 50.000 15.93 0.00 45.27 3.46
2024 2256 0.179258 GTCGATGTGGAACGCGAAAC 60.179 55.000 15.93 5.66 45.27 2.78
2025 2257 0.597898 TCGATGTGGAACGCGAAACA 60.598 50.000 15.93 11.75 41.92 2.83
2026 2258 0.179250 CGATGTGGAACGCGAAACAG 60.179 55.000 15.93 0.00 45.01 3.16
2027 2259 0.165944 GATGTGGAACGCGAAACAGG 59.834 55.000 15.93 0.00 45.01 4.00
2028 2260 0.534203 ATGTGGAACGCGAAACAGGT 60.534 50.000 15.93 0.00 45.01 4.00
2029 2261 1.155424 TGTGGAACGCGAAACAGGTC 61.155 55.000 15.93 0.00 45.01 3.85
2030 2262 0.878961 GTGGAACGCGAAACAGGTCT 60.879 55.000 15.93 0.00 0.00 3.85
2031 2263 0.179067 TGGAACGCGAAACAGGTCTT 60.179 50.000 15.93 0.00 0.00 3.01
2032 2264 0.511653 GGAACGCGAAACAGGTCTTC 59.488 55.000 15.93 1.86 0.00 2.87
2033 2265 0.161024 GAACGCGAAACAGGTCTTCG 59.839 55.000 15.93 0.78 46.55 3.79
2034 2266 0.529119 AACGCGAAACAGGTCTTCGT 60.529 50.000 15.93 0.00 45.77 3.85
2035 2267 0.529119 ACGCGAAACAGGTCTTCGTT 60.529 50.000 15.93 0.00 45.77 3.85
2036 2268 0.580104 CGCGAAACAGGTCTTCGTTT 59.420 50.000 0.00 0.00 45.77 3.60
2037 2269 1.004292 CGCGAAACAGGTCTTCGTTTT 60.004 47.619 0.00 0.00 45.77 2.43
2038 2270 2.636519 GCGAAACAGGTCTTCGTTTTC 58.363 47.619 6.80 0.00 45.77 2.29
2039 2271 2.031191 GCGAAACAGGTCTTCGTTTTCA 59.969 45.455 6.80 0.00 45.77 2.69
2040 2272 3.303791 GCGAAACAGGTCTTCGTTTTCAT 60.304 43.478 6.80 0.00 45.77 2.57
2041 2273 4.455124 CGAAACAGGTCTTCGTTTTCATC 58.545 43.478 0.00 0.00 40.56 2.92
2042 2274 4.610680 CGAAACAGGTCTTCGTTTTCATCC 60.611 45.833 0.00 0.00 40.56 3.51
2043 2275 2.413837 ACAGGTCTTCGTTTTCATCCG 58.586 47.619 0.00 0.00 0.00 4.18
2044 2276 2.224209 ACAGGTCTTCGTTTTCATCCGT 60.224 45.455 0.00 0.00 0.00 4.69
2045 2277 2.157668 CAGGTCTTCGTTTTCATCCGTG 59.842 50.000 0.00 0.00 0.00 4.94
2107 2339 1.133598 TCCGTGTACAAGCATCGGTAG 59.866 52.381 18.12 0.00 41.58 3.18
2133 2365 3.945285 GGAAACACATATTCGGTGGATGT 59.055 43.478 0.00 0.00 40.54 3.06
2323 2629 1.469703 TGAGAATTGTGGAATGCTGCG 59.530 47.619 0.00 0.00 25.93 5.18
2331 2642 3.277715 TGTGGAATGCTGCGAATGATAA 58.722 40.909 0.00 0.00 0.00 1.75
2599 3073 1.037493 TCGACCATCTCCATTACCCG 58.963 55.000 0.00 0.00 0.00 5.28
2602 3076 0.750850 ACCATCTCCATTACCCGTCG 59.249 55.000 0.00 0.00 0.00 5.12
2604 3078 1.538204 CCATCTCCATTACCCGTCGTG 60.538 57.143 0.00 0.00 0.00 4.35
2707 3181 4.826733 TCAGCCTGAAAAATGCAAGTCTTA 59.173 37.500 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.671781 AAGTCGATGACAGCAGGTGC 60.672 55.000 0.00 0.00 42.49 5.01
1 2 2.654749 TAAGTCGATGACAGCAGGTG 57.345 50.000 0.00 0.00 34.60 4.00
3 4 6.258727 ACAAAATATAAGTCGATGACAGCAGG 59.741 38.462 0.00 0.00 34.60 4.85
4 5 7.239166 ACAAAATATAAGTCGATGACAGCAG 57.761 36.000 0.00 0.00 34.60 4.24
6 7 8.354011 AGTACAAAATATAAGTCGATGACAGC 57.646 34.615 0.00 0.00 34.60 4.40
69 70 8.918961 CACAACAGGTGTTTTGTAAAGAAATA 57.081 30.769 0.00 0.00 42.75 1.40
98 101 2.311542 TGGGATTACTCTTGCATGGGTT 59.688 45.455 10.78 0.00 0.00 4.11
179 182 7.923414 TCTCGAGATATCATTCTTTCCGATA 57.077 36.000 12.08 0.00 0.00 2.92
206 209 5.374154 ACTCCTCCTCACCTTATCTCTCATA 59.626 44.000 0.00 0.00 0.00 2.15
269 272 2.818169 GCTGCCGTCCATCCCCATA 61.818 63.158 0.00 0.00 0.00 2.74
288 297 0.251922 AACAATCTGGCATGGTGGCT 60.252 50.000 5.12 0.00 44.10 4.75
348 358 4.286549 CCTGCCTCATTCATCCTTATCTCT 59.713 45.833 0.00 0.00 0.00 3.10
370 380 7.224297 TCTATTCACATTTACAGATAAGGCCC 58.776 38.462 0.00 0.00 0.00 5.80
390 400 8.902540 TTACAAAAGATATCCGCACATCTATT 57.097 30.769 0.00 0.00 31.25 1.73
392 402 8.725405 TTTTACAAAAGATATCCGCACATCTA 57.275 30.769 0.00 0.00 31.25 1.98
476 486 6.283694 AGTTGATGATAATGATGTGCGTACT 58.716 36.000 4.97 0.00 0.00 2.73
480 490 4.445385 TCGAGTTGATGATAATGATGTGCG 59.555 41.667 0.00 0.00 0.00 5.34
529 540 5.033326 AGGCGCAAAATAAAGCAAAATTG 57.967 34.783 10.83 0.00 0.00 2.32
530 541 4.154015 GGAGGCGCAAAATAAAGCAAAATT 59.846 37.500 10.83 0.00 0.00 1.82
531 542 3.684305 GGAGGCGCAAAATAAAGCAAAAT 59.316 39.130 10.83 0.00 0.00 1.82
532 543 3.063485 GGAGGCGCAAAATAAAGCAAAA 58.937 40.909 10.83 0.00 0.00 2.44
533 544 2.298729 AGGAGGCGCAAAATAAAGCAAA 59.701 40.909 10.83 0.00 0.00 3.68
534 545 1.892474 AGGAGGCGCAAAATAAAGCAA 59.108 42.857 10.83 0.00 0.00 3.91
535 546 1.544724 AGGAGGCGCAAAATAAAGCA 58.455 45.000 10.83 0.00 0.00 3.91
536 547 2.262211 CAAGGAGGCGCAAAATAAAGC 58.738 47.619 10.83 0.00 0.00 3.51
537 548 2.417243 CCCAAGGAGGCGCAAAATAAAG 60.417 50.000 10.83 0.00 35.39 1.85
538 549 1.548269 CCCAAGGAGGCGCAAAATAAA 59.452 47.619 10.83 0.00 35.39 1.40
539 550 1.181786 CCCAAGGAGGCGCAAAATAA 58.818 50.000 10.83 0.00 35.39 1.40
540 551 1.319614 GCCCAAGGAGGCGCAAAATA 61.320 55.000 10.83 0.00 44.57 1.40
541 552 2.649129 GCCCAAGGAGGCGCAAAAT 61.649 57.895 10.83 0.00 44.57 1.82
542 553 3.302344 GCCCAAGGAGGCGCAAAA 61.302 61.111 10.83 0.00 44.57 2.44
549 560 1.980772 CTTGCTTGGCCCAAGGAGG 60.981 63.158 24.41 18.59 42.27 4.30
550 561 1.228675 ACTTGCTTGGCCCAAGGAG 60.229 57.895 24.41 16.85 42.27 3.69
551 562 1.228552 GACTTGCTTGGCCCAAGGA 60.229 57.895 24.41 19.78 42.98 3.36
552 563 0.901580 ATGACTTGCTTGGCCCAAGG 60.902 55.000 24.41 10.82 42.98 3.61
553 564 0.245539 CATGACTTGCTTGGCCCAAG 59.754 55.000 19.47 19.47 43.57 3.61
554 565 0.469705 ACATGACTTGCTTGGCCCAA 60.470 50.000 0.00 0.00 0.00 4.12
555 566 0.895100 GACATGACTTGCTTGGCCCA 60.895 55.000 0.00 0.00 0.00 5.36
556 567 0.895100 TGACATGACTTGCTTGGCCC 60.895 55.000 0.00 0.00 0.00 5.80
557 568 1.180029 ATGACATGACTTGCTTGGCC 58.820 50.000 0.00 0.00 0.00 5.36
558 569 3.012518 AGTATGACATGACTTGCTTGGC 58.987 45.455 0.00 0.00 0.00 4.52
559 570 5.877012 AGTTAGTATGACATGACTTGCTTGG 59.123 40.000 0.00 0.00 0.00 3.61
560 571 6.974932 AGTTAGTATGACATGACTTGCTTG 57.025 37.500 0.00 0.00 0.00 4.01
561 572 8.094548 TGTTAGTTAGTATGACATGACTTGCTT 58.905 33.333 0.00 0.00 0.00 3.91
562 573 7.611770 TGTTAGTTAGTATGACATGACTTGCT 58.388 34.615 0.00 3.19 0.00 3.91
563 574 7.827819 TGTTAGTTAGTATGACATGACTTGC 57.172 36.000 0.00 0.00 0.00 4.01
564 575 9.424319 AGTTGTTAGTTAGTATGACATGACTTG 57.576 33.333 0.00 0.00 0.00 3.16
565 576 9.998106 AAGTTGTTAGTTAGTATGACATGACTT 57.002 29.630 0.00 0.00 0.00 3.01
568 579 9.563898 CGTAAGTTGTTAGTTAGTATGACATGA 57.436 33.333 0.00 0.00 0.00 3.07
569 580 9.563898 TCGTAAGTTGTTAGTTAGTATGACATG 57.436 33.333 0.00 0.00 39.48 3.21
571 582 9.563898 CATCGTAAGTTGTTAGTTAGTATGACA 57.436 33.333 0.00 0.00 39.48 3.58
572 583 9.778993 TCATCGTAAGTTGTTAGTTAGTATGAC 57.221 33.333 0.00 0.00 38.21 3.06
576 587 9.577110 CCATTCATCGTAAGTTGTTAGTTAGTA 57.423 33.333 0.00 0.00 38.21 1.82
577 588 8.092687 ACCATTCATCGTAAGTTGTTAGTTAGT 58.907 33.333 0.00 0.00 38.21 2.24
578 589 8.475331 ACCATTCATCGTAAGTTGTTAGTTAG 57.525 34.615 0.00 0.00 38.21 2.34
579 590 8.836268 AACCATTCATCGTAAGTTGTTAGTTA 57.164 30.769 0.00 0.00 38.21 2.24
580 591 7.739498 AACCATTCATCGTAAGTTGTTAGTT 57.261 32.000 0.00 0.00 38.21 2.24
581 592 8.836268 TTAACCATTCATCGTAAGTTGTTAGT 57.164 30.769 0.00 0.00 38.21 2.24
582 593 9.146984 TCTTAACCATTCATCGTAAGTTGTTAG 57.853 33.333 0.00 0.00 38.21 2.34
583 594 9.146984 CTCTTAACCATTCATCGTAAGTTGTTA 57.853 33.333 0.00 0.00 38.21 2.41
584 595 7.876068 TCTCTTAACCATTCATCGTAAGTTGTT 59.124 33.333 0.00 0.00 38.21 2.83
585 596 7.383687 TCTCTTAACCATTCATCGTAAGTTGT 58.616 34.615 0.00 0.00 38.21 3.32
586 597 7.827819 TCTCTTAACCATTCATCGTAAGTTG 57.172 36.000 0.00 0.00 38.39 3.16
587 598 8.311836 TCTTCTCTTAACCATTCATCGTAAGTT 58.688 33.333 0.00 0.00 39.48 2.66
588 599 7.837863 TCTTCTCTTAACCATTCATCGTAAGT 58.162 34.615 0.00 0.00 39.48 2.24
589 600 8.879342 ATCTTCTCTTAACCATTCATCGTAAG 57.121 34.615 0.00 0.00 0.00 2.34
592 603 9.838339 AAATATCTTCTCTTAACCATTCATCGT 57.162 29.630 0.00 0.00 0.00 3.73
599 610 9.277783 CGGATGAAAATATCTTCTCTTAACCAT 57.722 33.333 0.00 0.00 33.74 3.55
600 611 8.265055 ACGGATGAAAATATCTTCTCTTAACCA 58.735 33.333 0.00 0.00 33.74 3.67
601 612 8.664211 ACGGATGAAAATATCTTCTCTTAACC 57.336 34.615 0.00 0.00 33.74 2.85
602 613 9.314321 TGACGGATGAAAATATCTTCTCTTAAC 57.686 33.333 0.00 0.00 33.74 2.01
603 614 9.534565 CTGACGGATGAAAATATCTTCTCTTAA 57.465 33.333 0.00 0.00 33.74 1.85
604 615 8.914011 TCTGACGGATGAAAATATCTTCTCTTA 58.086 33.333 0.00 0.00 33.74 2.10
605 616 7.786030 TCTGACGGATGAAAATATCTTCTCTT 58.214 34.615 0.00 0.00 33.74 2.85
606 617 7.069331 ACTCTGACGGATGAAAATATCTTCTCT 59.931 37.037 0.00 0.00 33.74 3.10
607 618 7.206687 ACTCTGACGGATGAAAATATCTTCTC 58.793 38.462 0.00 0.00 33.74 2.87
608 619 7.118496 ACTCTGACGGATGAAAATATCTTCT 57.882 36.000 0.00 0.00 33.74 2.85
609 620 7.778470 AACTCTGACGGATGAAAATATCTTC 57.222 36.000 0.00 0.00 0.00 2.87
610 621 9.667107 TTAAACTCTGACGGATGAAAATATCTT 57.333 29.630 0.00 0.00 0.00 2.40
611 622 9.319143 CTTAAACTCTGACGGATGAAAATATCT 57.681 33.333 0.00 0.00 0.00 1.98
612 623 9.099454 ACTTAAACTCTGACGGATGAAAATATC 57.901 33.333 0.00 0.00 0.00 1.63
615 626 9.449719 AATACTTAAACTCTGACGGATGAAAAT 57.550 29.630 0.00 0.00 0.00 1.82
616 627 8.842358 AATACTTAAACTCTGACGGATGAAAA 57.158 30.769 0.00 0.00 0.00 2.29
617 628 9.582431 CTAATACTTAAACTCTGACGGATGAAA 57.418 33.333 0.00 0.00 0.00 2.69
618 629 8.963725 TCTAATACTTAAACTCTGACGGATGAA 58.036 33.333 0.00 0.00 0.00 2.57
619 630 8.404000 GTCTAATACTTAAACTCTGACGGATGA 58.596 37.037 0.00 0.00 0.00 2.92
620 631 8.407064 AGTCTAATACTTAAACTCTGACGGATG 58.593 37.037 0.00 0.00 33.35 3.51
621 632 8.522542 AGTCTAATACTTAAACTCTGACGGAT 57.477 34.615 0.00 0.00 33.35 4.18
622 633 7.934855 AGTCTAATACTTAAACTCTGACGGA 57.065 36.000 0.00 0.00 33.35 4.69
675 686 9.737427 ACACACATCGTTAAAATGTTTGAAATA 57.263 25.926 18.28 0.00 37.10 1.40
676 687 8.641499 ACACACATCGTTAAAATGTTTGAAAT 57.359 26.923 18.28 2.07 37.10 2.17
677 688 8.467402 AACACACATCGTTAAAATGTTTGAAA 57.533 26.923 18.28 0.00 37.10 2.69
678 689 8.467402 AAACACACATCGTTAAAATGTTTGAA 57.533 26.923 18.28 0.00 37.10 2.69
679 690 9.227490 CTAAACACACATCGTTAAAATGTTTGA 57.773 29.630 18.28 3.48 37.10 2.69
680 691 9.015577 ACTAAACACACATCGTTAAAATGTTTG 57.984 29.630 13.10 13.10 39.54 2.93
681 692 9.015577 CACTAAACACACATCGTTAAAATGTTT 57.984 29.630 0.00 0.00 40.71 2.83
682 693 8.399425 TCACTAAACACACATCGTTAAAATGTT 58.601 29.630 2.72 0.00 35.19 2.71
683 694 7.921787 TCACTAAACACACATCGTTAAAATGT 58.078 30.769 0.06 0.06 37.85 2.71
684 695 8.067784 ACTCACTAAACACACATCGTTAAAATG 58.932 33.333 0.00 0.00 0.00 2.32
685 696 8.149973 ACTCACTAAACACACATCGTTAAAAT 57.850 30.769 0.00 0.00 0.00 1.82
686 697 7.542534 ACTCACTAAACACACATCGTTAAAA 57.457 32.000 0.00 0.00 0.00 1.52
687 698 7.383029 CCTACTCACTAAACACACATCGTTAAA 59.617 37.037 0.00 0.00 0.00 1.52
688 699 6.864685 CCTACTCACTAAACACACATCGTTAA 59.135 38.462 0.00 0.00 0.00 2.01
689 700 6.207221 TCCTACTCACTAAACACACATCGTTA 59.793 38.462 0.00 0.00 0.00 3.18
690 701 5.010314 TCCTACTCACTAAACACACATCGTT 59.990 40.000 0.00 0.00 0.00 3.85
691 702 4.521639 TCCTACTCACTAAACACACATCGT 59.478 41.667 0.00 0.00 0.00 3.73
692 703 5.055642 TCCTACTCACTAAACACACATCG 57.944 43.478 0.00 0.00 0.00 3.84
693 704 6.456501 AGTTCCTACTCACTAAACACACATC 58.543 40.000 0.00 0.00 0.00 3.06
694 705 6.420913 AGTTCCTACTCACTAAACACACAT 57.579 37.500 0.00 0.00 0.00 3.21
695 706 5.864418 AGTTCCTACTCACTAAACACACA 57.136 39.130 0.00 0.00 0.00 3.72
696 707 7.549615 AAAAGTTCCTACTCACTAAACACAC 57.450 36.000 0.00 0.00 31.99 3.82
697 708 7.825270 TGAAAAAGTTCCTACTCACTAAACACA 59.175 33.333 0.00 0.00 31.99 3.72
698 709 8.205131 TGAAAAAGTTCCTACTCACTAAACAC 57.795 34.615 0.00 0.00 31.99 3.32
699 710 8.974060 ATGAAAAAGTTCCTACTCACTAAACA 57.026 30.769 0.00 0.00 31.99 2.83
700 711 9.052759 TGATGAAAAAGTTCCTACTCACTAAAC 57.947 33.333 0.00 0.00 31.99 2.01
701 712 9.621629 TTGATGAAAAAGTTCCTACTCACTAAA 57.378 29.630 0.00 0.00 31.99 1.85
702 713 9.052759 GTTGATGAAAAAGTTCCTACTCACTAA 57.947 33.333 0.00 0.00 31.99 2.24
703 714 8.429641 AGTTGATGAAAAAGTTCCTACTCACTA 58.570 33.333 0.00 0.00 31.99 2.74
704 715 7.283329 AGTTGATGAAAAAGTTCCTACTCACT 58.717 34.615 0.00 0.00 31.99 3.41
705 716 7.497925 AGTTGATGAAAAAGTTCCTACTCAC 57.502 36.000 0.00 0.00 31.99 3.51
706 717 9.219603 CATAGTTGATGAAAAAGTTCCTACTCA 57.780 33.333 0.00 0.00 37.82 3.41
707 718 9.436957 TCATAGTTGATGAAAAAGTTCCTACTC 57.563 33.333 0.00 0.00 41.80 2.59
743 754 8.069574 GCACACATCGTTATGATAAAATCATCA 58.930 33.333 5.69 0.00 46.62 3.07
744 755 8.285394 AGCACACATCGTTATGATAAAATCATC 58.715 33.333 5.69 0.00 46.62 2.92
746 757 7.552458 AGCACACATCGTTATGATAAAATCA 57.448 32.000 0.00 0.00 44.55 2.57
747 758 9.586150 CTAAGCACACATCGTTATGATAAAATC 57.414 33.333 0.00 0.00 34.83 2.17
748 759 9.109393 ACTAAGCACACATCGTTATGATAAAAT 57.891 29.630 0.00 0.00 34.83 1.82
749 760 8.387354 CACTAAGCACACATCGTTATGATAAAA 58.613 33.333 0.00 0.00 34.83 1.52
750 761 7.762159 TCACTAAGCACACATCGTTATGATAAA 59.238 33.333 0.00 0.00 34.83 1.40
751 762 7.262048 TCACTAAGCACACATCGTTATGATAA 58.738 34.615 0.00 0.00 34.83 1.75
752 763 6.801575 TCACTAAGCACACATCGTTATGATA 58.198 36.000 0.00 0.00 34.83 2.15
753 764 5.660460 TCACTAAGCACACATCGTTATGAT 58.340 37.500 0.00 0.00 38.01 2.45
754 765 5.066968 TCACTAAGCACACATCGTTATGA 57.933 39.130 0.00 0.00 36.54 2.15
755 766 5.778161 TTCACTAAGCACACATCGTTATG 57.222 39.130 0.00 0.00 39.17 1.90
756 767 5.351465 CCTTTCACTAAGCACACATCGTTAT 59.649 40.000 0.00 0.00 32.19 1.89
757 768 4.688879 CCTTTCACTAAGCACACATCGTTA 59.311 41.667 0.00 0.00 32.19 3.18
758 769 3.498397 CCTTTCACTAAGCACACATCGTT 59.502 43.478 0.00 0.00 32.19 3.85
759 770 3.067106 CCTTTCACTAAGCACACATCGT 58.933 45.455 0.00 0.00 32.19 3.73
760 771 2.416547 CCCTTTCACTAAGCACACATCG 59.583 50.000 0.00 0.00 32.19 3.84
761 772 2.749621 CCCCTTTCACTAAGCACACATC 59.250 50.000 0.00 0.00 32.19 3.06
762 773 2.375174 TCCCCTTTCACTAAGCACACAT 59.625 45.455 0.00 0.00 32.19 3.21
763 774 1.771854 TCCCCTTTCACTAAGCACACA 59.228 47.619 0.00 0.00 32.19 3.72
764 775 2.152016 GTCCCCTTTCACTAAGCACAC 58.848 52.381 0.00 0.00 32.19 3.82
765 776 2.054799 AGTCCCCTTTCACTAAGCACA 58.945 47.619 0.00 0.00 32.19 4.57
766 777 2.861147 AGTCCCCTTTCACTAAGCAC 57.139 50.000 0.00 0.00 32.19 4.40
767 778 3.876309 AAAGTCCCCTTTCACTAAGCA 57.124 42.857 0.00 0.00 36.08 3.91
768 779 3.506455 GGAAAAGTCCCCTTTCACTAAGC 59.494 47.826 0.00 0.00 40.01 3.09
769 780 4.725490 TGGAAAAGTCCCCTTTCACTAAG 58.275 43.478 0.00 0.00 44.23 2.18
770 781 4.799715 TGGAAAAGTCCCCTTTCACTAA 57.200 40.909 0.00 0.00 44.23 2.24
771 782 4.601857 AGATGGAAAAGTCCCCTTTCACTA 59.398 41.667 0.00 0.00 44.23 2.74
772 783 3.399305 AGATGGAAAAGTCCCCTTTCACT 59.601 43.478 0.00 0.00 44.23 3.41
773 784 3.767711 AGATGGAAAAGTCCCCTTTCAC 58.232 45.455 0.00 0.00 44.23 3.18
774 785 4.601857 AGTAGATGGAAAAGTCCCCTTTCA 59.398 41.667 0.00 0.00 44.23 2.69
775 786 5.180810 AGTAGATGGAAAAGTCCCCTTTC 57.819 43.478 0.00 0.00 44.23 2.62
776 787 5.338137 CGTAGTAGATGGAAAAGTCCCCTTT 60.338 44.000 0.00 0.00 44.23 3.11
777 788 4.161754 CGTAGTAGATGGAAAAGTCCCCTT 59.838 45.833 0.00 0.00 44.23 3.95
778 789 3.705072 CGTAGTAGATGGAAAAGTCCCCT 59.295 47.826 0.00 0.00 44.23 4.79
779 790 3.703052 TCGTAGTAGATGGAAAAGTCCCC 59.297 47.826 0.00 0.00 44.23 4.81
780 791 4.996788 TCGTAGTAGATGGAAAAGTCCC 57.003 45.455 0.00 0.00 44.23 4.46
781 792 6.647895 TGTTTTCGTAGTAGATGGAAAAGTCC 59.352 38.462 0.00 0.00 45.21 3.85
782 793 7.647907 TGTTTTCGTAGTAGATGGAAAAGTC 57.352 36.000 0.00 0.00 38.58 3.01
783 794 9.886132 ATATGTTTTCGTAGTAGATGGAAAAGT 57.114 29.630 0.00 0.00 38.58 2.66
786 797 9.454585 CGTATATGTTTTCGTAGTAGATGGAAA 57.545 33.333 0.00 0.00 0.00 3.13
787 798 8.839343 TCGTATATGTTTTCGTAGTAGATGGAA 58.161 33.333 0.00 0.00 0.00 3.53
788 799 8.382030 TCGTATATGTTTTCGTAGTAGATGGA 57.618 34.615 0.00 0.00 0.00 3.41
789 800 9.062674 CATCGTATATGTTTTCGTAGTAGATGG 57.937 37.037 0.00 0.00 32.35 3.51
790 801 9.821662 TCATCGTATATGTTTTCGTAGTAGATG 57.178 33.333 0.00 0.00 34.44 2.90
791 802 9.823098 GTCATCGTATATGTTTTCGTAGTAGAT 57.177 33.333 0.00 0.00 0.00 1.98
792 803 9.049523 AGTCATCGTATATGTTTTCGTAGTAGA 57.950 33.333 0.00 0.00 0.00 2.59
793 804 9.661187 AAGTCATCGTATATGTTTTCGTAGTAG 57.339 33.333 0.00 0.00 0.00 2.57
816 827 9.193133 CCGTACATAATTTTGAGATCGATAAGT 57.807 33.333 0.00 0.00 0.00 2.24
817 828 9.406828 TCCGTACATAATTTTGAGATCGATAAG 57.593 33.333 0.00 0.00 0.00 1.73
818 829 9.923143 ATCCGTACATAATTTTGAGATCGATAA 57.077 29.630 0.00 0.00 0.00 1.75
819 830 9.923143 AATCCGTACATAATTTTGAGATCGATA 57.077 29.630 0.00 0.00 0.00 2.92
820 831 8.833231 AATCCGTACATAATTTTGAGATCGAT 57.167 30.769 0.00 0.00 0.00 3.59
821 832 7.923878 TGAATCCGTACATAATTTTGAGATCGA 59.076 33.333 2.69 0.00 0.00 3.59
822 833 8.072238 TGAATCCGTACATAATTTTGAGATCG 57.928 34.615 2.69 2.51 0.00 3.69
825 836 9.613428 AGATTGAATCCGTACATAATTTTGAGA 57.387 29.630 0.75 0.00 0.00 3.27
826 837 9.869844 GAGATTGAATCCGTACATAATTTTGAG 57.130 33.333 0.75 0.00 0.00 3.02
827 838 9.613428 AGAGATTGAATCCGTACATAATTTTGA 57.387 29.630 0.75 0.00 0.00 2.69
828 839 9.655769 CAGAGATTGAATCCGTACATAATTTTG 57.344 33.333 0.75 0.00 0.00 2.44
829 840 9.613428 TCAGAGATTGAATCCGTACATAATTTT 57.387 29.630 0.75 0.00 31.34 1.82
830 841 9.265901 CTCAGAGATTGAATCCGTACATAATTT 57.734 33.333 0.75 0.00 34.81 1.82
831 842 8.642432 TCTCAGAGATTGAATCCGTACATAATT 58.358 33.333 0.75 0.00 34.81 1.40
832 843 8.183104 TCTCAGAGATTGAATCCGTACATAAT 57.817 34.615 0.75 0.00 34.81 1.28
833 844 7.582667 TCTCAGAGATTGAATCCGTACATAA 57.417 36.000 0.75 0.00 34.81 1.90
834 845 7.231519 ACATCTCAGAGATTGAATCCGTACATA 59.768 37.037 10.51 0.00 31.32 2.29
835 846 6.041409 ACATCTCAGAGATTGAATCCGTACAT 59.959 38.462 10.51 0.00 31.32 2.29
836 847 5.360999 ACATCTCAGAGATTGAATCCGTACA 59.639 40.000 10.51 0.00 31.32 2.90
837 848 5.689514 CACATCTCAGAGATTGAATCCGTAC 59.310 44.000 10.51 0.00 31.32 3.67
838 849 5.737349 GCACATCTCAGAGATTGAATCCGTA 60.737 44.000 10.51 0.00 31.32 4.02
839 850 4.691175 CACATCTCAGAGATTGAATCCGT 58.309 43.478 10.51 1.03 31.32 4.69
840 851 3.493877 GCACATCTCAGAGATTGAATCCG 59.506 47.826 10.51 0.39 31.32 4.18
841 852 4.706035 AGCACATCTCAGAGATTGAATCC 58.294 43.478 10.51 1.46 31.32 3.01
842 853 4.445052 CGAGCACATCTCAGAGATTGAATC 59.555 45.833 10.51 11.79 41.98 2.52
843 854 4.141981 ACGAGCACATCTCAGAGATTGAAT 60.142 41.667 10.51 5.61 41.98 2.57
844 855 3.194329 ACGAGCACATCTCAGAGATTGAA 59.806 43.478 10.51 0.00 41.98 2.69
845 856 2.757314 ACGAGCACATCTCAGAGATTGA 59.243 45.455 10.51 0.00 41.98 2.57
846 857 3.162202 ACGAGCACATCTCAGAGATTG 57.838 47.619 10.51 12.69 41.98 2.67
847 858 4.202101 CCTTACGAGCACATCTCAGAGATT 60.202 45.833 10.51 0.00 41.98 2.40
848 859 3.317711 CCTTACGAGCACATCTCAGAGAT 59.682 47.826 7.15 7.15 41.98 2.75
849 860 2.685388 CCTTACGAGCACATCTCAGAGA 59.315 50.000 1.54 1.54 41.98 3.10
850 861 2.685388 TCCTTACGAGCACATCTCAGAG 59.315 50.000 0.00 0.00 41.98 3.35
851 862 2.423892 GTCCTTACGAGCACATCTCAGA 59.576 50.000 0.00 0.00 41.98 3.27
852 863 2.164422 TGTCCTTACGAGCACATCTCAG 59.836 50.000 0.00 0.00 41.98 3.35
853 864 2.164422 CTGTCCTTACGAGCACATCTCA 59.836 50.000 0.00 0.00 41.98 3.27
854 865 2.480416 CCTGTCCTTACGAGCACATCTC 60.480 54.545 0.00 0.00 38.47 2.75
855 866 1.478510 CCTGTCCTTACGAGCACATCT 59.521 52.381 0.00 0.00 0.00 2.90
856 867 1.476891 TCCTGTCCTTACGAGCACATC 59.523 52.381 0.00 0.00 0.00 3.06
857 868 1.204941 GTCCTGTCCTTACGAGCACAT 59.795 52.381 0.00 0.00 0.00 3.21
858 869 0.601558 GTCCTGTCCTTACGAGCACA 59.398 55.000 0.00 0.00 0.00 4.57
859 870 0.456312 CGTCCTGTCCTTACGAGCAC 60.456 60.000 0.00 0.00 38.89 4.40
860 871 0.892358 ACGTCCTGTCCTTACGAGCA 60.892 55.000 0.00 0.00 39.80 4.26
861 872 0.456312 CACGTCCTGTCCTTACGAGC 60.456 60.000 0.00 0.00 39.80 5.03
862 873 0.456312 GCACGTCCTGTCCTTACGAG 60.456 60.000 0.00 0.00 39.80 4.18
863 874 1.582968 GCACGTCCTGTCCTTACGA 59.417 57.895 0.00 0.00 39.80 3.43
864 875 1.800315 CGCACGTCCTGTCCTTACG 60.800 63.158 0.00 0.00 42.17 3.18
865 876 1.007336 CACGCACGTCCTGTCCTTAC 61.007 60.000 0.00 0.00 0.00 2.34
866 877 1.287815 CACGCACGTCCTGTCCTTA 59.712 57.895 0.00 0.00 0.00 2.69
867 878 2.029073 CACGCACGTCCTGTCCTT 59.971 61.111 0.00 0.00 0.00 3.36
868 879 3.224324 ACACGCACGTCCTGTCCT 61.224 61.111 0.00 0.00 0.00 3.85
869 880 3.036084 CACACGCACGTCCTGTCC 61.036 66.667 0.00 0.00 0.00 4.02
870 881 3.702555 GCACACGCACGTCCTGTC 61.703 66.667 0.00 0.00 38.36 3.51
882 893 3.952675 CACACACCCAGCGCACAC 61.953 66.667 11.47 0.00 0.00 3.82
883 894 2.390306 ATACACACACCCAGCGCACA 62.390 55.000 11.47 0.00 0.00 4.57
884 895 1.671054 ATACACACACCCAGCGCAC 60.671 57.895 11.47 0.00 0.00 5.34
885 896 1.670730 CATACACACACCCAGCGCA 60.671 57.895 11.47 0.00 0.00 6.09
886 897 0.390603 TACATACACACACCCAGCGC 60.391 55.000 0.00 0.00 0.00 5.92
887 898 2.309528 ATACATACACACACCCAGCG 57.690 50.000 0.00 0.00 0.00 5.18
888 899 6.150474 AGTTTTTATACATACACACACCCAGC 59.850 38.462 0.00 0.00 0.00 4.85
889 900 7.389330 TCAGTTTTTATACATACACACACCCAG 59.611 37.037 0.00 0.00 0.00 4.45
890 901 7.173562 GTCAGTTTTTATACATACACACACCCA 59.826 37.037 0.00 0.00 0.00 4.51
891 902 7.524065 GTCAGTTTTTATACATACACACACCC 58.476 38.462 0.00 0.00 0.00 4.61
892 903 7.231607 CGTCAGTTTTTATACATACACACACC 58.768 38.462 0.00 0.00 0.00 4.16
893 904 6.735063 GCGTCAGTTTTTATACATACACACAC 59.265 38.462 0.00 0.00 0.00 3.82
894 905 6.424207 TGCGTCAGTTTTTATACATACACACA 59.576 34.615 0.00 0.00 0.00 3.72
895 906 6.735063 GTGCGTCAGTTTTTATACATACACAC 59.265 38.462 0.00 0.00 0.00 3.82
896 907 6.647481 AGTGCGTCAGTTTTTATACATACACA 59.353 34.615 0.00 0.00 0.00 3.72
897 908 7.057149 AGTGCGTCAGTTTTTATACATACAC 57.943 36.000 0.00 0.00 0.00 2.90
898 909 6.869388 TGAGTGCGTCAGTTTTTATACATACA 59.131 34.615 0.00 0.00 0.00 2.29
899 910 7.063074 AGTGAGTGCGTCAGTTTTTATACATAC 59.937 37.037 0.00 0.00 34.98 2.39
900 911 7.062956 CAGTGAGTGCGTCAGTTTTTATACATA 59.937 37.037 0.00 0.00 36.62 2.29
901 912 5.932303 AGTGAGTGCGTCAGTTTTTATACAT 59.068 36.000 0.00 0.00 34.98 2.29
902 913 5.176774 CAGTGAGTGCGTCAGTTTTTATACA 59.823 40.000 0.00 0.00 36.62 2.29
903 914 5.389516 CCAGTGAGTGCGTCAGTTTTTATAC 60.390 44.000 0.00 0.00 36.62 1.47
904 915 4.688879 CCAGTGAGTGCGTCAGTTTTTATA 59.311 41.667 0.00 0.00 36.62 0.98
905 916 3.498397 CCAGTGAGTGCGTCAGTTTTTAT 59.502 43.478 0.00 0.00 36.62 1.40
906 917 2.869801 CCAGTGAGTGCGTCAGTTTTTA 59.130 45.455 0.00 0.00 36.62 1.52
925 936 0.171455 GTTTTGTGGTGTTGCGACCA 59.829 50.000 0.45 0.00 44.09 4.02
943 954 6.296026 TCTTTTGGCTGTACAAGTATTCTGT 58.704 36.000 0.00 0.00 0.00 3.41
944 955 6.801539 TCTTTTGGCTGTACAAGTATTCTG 57.198 37.500 0.00 0.00 0.00 3.02
946 957 7.918562 TGTTTTCTTTTGGCTGTACAAGTATTC 59.081 33.333 0.00 0.00 0.00 1.75
959 971 5.270812 TCGTGTTTTTGTTTTCTTTTGGC 57.729 34.783 0.00 0.00 0.00 4.52
985 997 0.863119 GCCATCGCGCTGTGATTTTC 60.863 55.000 9.34 0.00 29.68 2.29
1054 1066 1.381872 CCTCCTCCCTCCACACGAT 60.382 63.158 0.00 0.00 0.00 3.73
1288 1300 1.365633 CCGAGATGTAGGAGCAGGC 59.634 63.158 0.00 0.00 0.00 4.85
1314 1326 0.916845 AGAGGAAAGGGAAGAGGGGC 60.917 60.000 0.00 0.00 0.00 5.80
1352 1365 1.689273 AGAAACTCACGGAGCAAGAGT 59.311 47.619 0.00 0.00 43.98 3.24
1375 1388 6.035435 CAGATATATCATTTAGCGCTGACCAC 59.965 42.308 22.90 1.10 0.00 4.16
1378 1391 5.006165 GGCAGATATATCATTTAGCGCTGAC 59.994 44.000 22.90 0.00 0.00 3.51
1380 1393 4.272018 GGGCAGATATATCATTTAGCGCTG 59.728 45.833 22.90 3.60 0.00 5.18
1382 1395 3.561725 GGGGCAGATATATCATTTAGCGC 59.438 47.826 15.08 15.54 0.00 5.92
1394 1407 5.163519 CGTTTTCATTTTCTGGGGCAGATAT 60.164 40.000 0.00 0.00 40.39 1.63
1462 1685 2.408050 GCGAGAACAGTCACAATCAGT 58.592 47.619 0.00 0.00 0.00 3.41
1469 1692 1.197264 AGTCTACGCGAGAACAGTCAC 59.803 52.381 15.93 0.00 35.37 3.67
1471 1694 1.527389 CGAGTCTACGCGAGAACAGTC 60.527 57.143 15.93 3.15 41.67 3.51
1517 1740 3.777106 ATGCTGACCTGAAGAAGTTCA 57.223 42.857 5.50 0.00 40.55 3.18
1518 1741 5.444663 AAAATGCTGACCTGAAGAAGTTC 57.555 39.130 0.00 0.00 0.00 3.01
1519 1742 5.859205 AAAAATGCTGACCTGAAGAAGTT 57.141 34.783 0.00 0.00 0.00 2.66
1520 1743 6.944862 AGATAAAAATGCTGACCTGAAGAAGT 59.055 34.615 0.00 0.00 0.00 3.01
1524 1747 5.163581 CCCAGATAAAAATGCTGACCTGAAG 60.164 44.000 0.00 0.00 0.00 3.02
1563 1786 2.315925 TGTAGACATAGCCAAGCTGC 57.684 50.000 0.00 0.00 40.10 5.25
1637 1861 3.679502 AGCACTTCAACAACTTGTTTTGC 59.320 39.130 4.30 10.59 38.77 3.68
1655 1879 0.109597 CGATTGCAGTTCCCAAGCAC 60.110 55.000 0.00 0.00 38.11 4.40
1665 1889 4.836125 AAAATGTTGAGACGATTGCAGT 57.164 36.364 0.00 0.00 0.00 4.40
1695 1926 0.322277 CATCAGGGTCAGCAACAGCT 60.322 55.000 0.00 0.00 39.75 4.24
1824 2056 5.404366 GTGAGCACACGATTTACTTGTTCTA 59.596 40.000 0.00 0.00 37.28 2.10
1825 2057 4.211374 GTGAGCACACGATTTACTTGTTCT 59.789 41.667 0.00 0.00 37.28 3.01
1826 2058 4.455124 GTGAGCACACGATTTACTTGTTC 58.545 43.478 0.00 0.00 37.28 3.18
1869 2101 5.360999 AGTGATACACTAACATAGCAGCTGA 59.639 40.000 20.43 0.00 43.46 4.26
1872 2104 5.592054 TCAGTGATACACTAACATAGCAGC 58.408 41.667 4.08 0.00 43.43 5.25
1911 2143 0.096976 CGTCGCCATGGTTGATCAAC 59.903 55.000 27.16 27.16 40.45 3.18
1950 2182 0.387202 AGCTCAATAGTCGCAGCGAT 59.613 50.000 22.72 12.48 38.42 4.58
2000 2232 1.687494 GCGTTCCACATCGACTGCTC 61.687 60.000 0.00 0.00 0.00 4.26
2004 2236 0.319211 TTTCGCGTTCCACATCGACT 60.319 50.000 5.77 0.00 0.00 4.18
2013 2245 0.511653 GAAGACCTGTTTCGCGTTCC 59.488 55.000 5.77 0.00 0.00 3.62
2014 2246 0.161024 CGAAGACCTGTTTCGCGTTC 59.839 55.000 5.77 0.00 40.60 3.95
2015 2247 2.222592 CGAAGACCTGTTTCGCGTT 58.777 52.632 5.77 0.00 40.60 4.84
2016 2248 3.932289 CGAAGACCTGTTTCGCGT 58.068 55.556 5.77 0.00 40.60 6.01
2020 2252 4.610680 CGGATGAAAACGAAGACCTGTTTC 60.611 45.833 0.00 0.00 37.31 2.78
2021 2253 3.250040 CGGATGAAAACGAAGACCTGTTT 59.750 43.478 0.00 0.00 39.84 2.83
2022 2254 2.806244 CGGATGAAAACGAAGACCTGTT 59.194 45.455 0.00 0.00 0.00 3.16
2023 2255 2.224209 ACGGATGAAAACGAAGACCTGT 60.224 45.455 0.00 0.00 0.00 4.00
2024 2256 2.157668 CACGGATGAAAACGAAGACCTG 59.842 50.000 0.00 0.00 0.00 4.00
2025 2257 2.224209 ACACGGATGAAAACGAAGACCT 60.224 45.455 0.00 0.00 0.00 3.85
2026 2258 2.140717 ACACGGATGAAAACGAAGACC 58.859 47.619 0.00 0.00 0.00 3.85
2027 2259 4.232221 TCTACACGGATGAAAACGAAGAC 58.768 43.478 0.00 0.00 0.00 3.01
2028 2260 4.508461 TCTACACGGATGAAAACGAAGA 57.492 40.909 0.00 0.00 0.00 2.87
2029 2261 4.446385 TGTTCTACACGGATGAAAACGAAG 59.554 41.667 0.00 0.00 0.00 3.79
2030 2262 4.370049 TGTTCTACACGGATGAAAACGAA 58.630 39.130 0.00 0.00 0.00 3.85
2031 2263 3.979948 TGTTCTACACGGATGAAAACGA 58.020 40.909 0.00 0.00 0.00 3.85
2032 2264 4.921470 ATGTTCTACACGGATGAAAACG 57.079 40.909 0.00 0.00 0.00 3.60
2033 2265 6.236017 TCAATGTTCTACACGGATGAAAAC 57.764 37.500 0.00 0.00 0.00 2.43
2034 2266 6.622679 GCATCAATGTTCTACACGGATGAAAA 60.623 38.462 18.81 0.00 41.06 2.29
2035 2267 5.163764 GCATCAATGTTCTACACGGATGAAA 60.164 40.000 18.81 0.00 41.06 2.69
2036 2268 4.332543 GCATCAATGTTCTACACGGATGAA 59.667 41.667 18.81 0.00 41.06 2.57
2037 2269 3.871006 GCATCAATGTTCTACACGGATGA 59.129 43.478 18.81 7.41 41.06 2.92
2038 2270 3.302675 CGCATCAATGTTCTACACGGATG 60.303 47.826 13.77 13.77 41.28 3.51
2039 2271 2.866156 CGCATCAATGTTCTACACGGAT 59.134 45.455 0.00 0.00 0.00 4.18
2040 2272 2.267426 CGCATCAATGTTCTACACGGA 58.733 47.619 0.00 0.00 0.00 4.69
2041 2273 1.327460 CCGCATCAATGTTCTACACGG 59.673 52.381 0.00 0.00 0.00 4.94
2042 2274 2.267426 TCCGCATCAATGTTCTACACG 58.733 47.619 0.00 0.00 0.00 4.49
2043 2275 3.483574 CGTTCCGCATCAATGTTCTACAC 60.484 47.826 0.00 0.00 0.00 2.90
2044 2276 2.670905 CGTTCCGCATCAATGTTCTACA 59.329 45.455 0.00 0.00 0.00 2.74
2045 2277 3.304382 CGTTCCGCATCAATGTTCTAC 57.696 47.619 0.00 0.00 0.00 2.59
2067 2299 4.610680 CGGATGAAAACGAAGACCTGTTTC 60.611 45.833 0.00 0.00 37.31 2.78
2107 2339 2.350498 CACCGAATATGTGTTTCCGGTC 59.650 50.000 0.00 0.00 31.94 4.79
2133 2365 1.969923 CTTGGGCCTGAACCATGAAAA 59.030 47.619 4.53 0.00 37.93 2.29
2331 2642 9.841295 AACAACCGAGTTATGTATAATTATGGT 57.159 29.630 8.28 0.83 0.00 3.55
2599 3073 0.872388 CTAAAGGCAACCACCACGAC 59.128 55.000 0.00 0.00 37.17 4.34
2602 3076 1.534729 CTCCTAAAGGCAACCACCAC 58.465 55.000 0.00 0.00 34.44 4.16
2604 3078 3.266240 CCTCCTAAAGGCAACCACC 57.734 57.895 0.00 0.00 38.67 4.61
2707 3181 7.661847 GCCAGGCATAGTGAATATAACTAACTT 59.338 37.037 6.55 0.00 33.97 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.