Multiple sequence alignment - TraesCS2A01G303100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G303100 chr2A 100.000 4310 0 0 1 4310 520297501 520301810 0.000000e+00 7960.0
1 TraesCS2A01G303100 chr2B 95.907 3787 122 12 232 4003 456016410 456020178 0.000000e+00 6104.0
2 TraesCS2A01G303100 chr2B 89.967 299 19 4 4012 4310 456020249 456020536 4.070000e-100 375.0
3 TraesCS2A01G303100 chr2B 95.964 223 8 1 1 223 456016140 456016361 1.140000e-95 361.0
4 TraesCS2A01G303100 chr2D 94.384 3757 150 26 276 4003 385159016 385162740 0.000000e+00 5712.0
5 TraesCS2A01G303100 chr2D 90.667 300 20 4 4012 4310 385162811 385163103 4.040000e-105 392.0
6 TraesCS2A01G303100 chr2D 93.529 170 8 3 1 168 385157052 385157220 2.570000e-62 250.0
7 TraesCS2A01G303100 chr1D 73.827 554 102 29 1328 1873 366874218 366874736 3.420000e-41 180.0
8 TraesCS2A01G303100 chr7D 90.625 64 6 0 3933 3996 22670351 22670288 7.680000e-13 86.1
9 TraesCS2A01G303100 chr5D 90.625 64 6 0 3933 3996 396165162 396165225 7.680000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G303100 chr2A 520297501 520301810 4309 False 7960 7960 100.000 1 4310 1 chr2A.!!$F1 4309
1 TraesCS2A01G303100 chr2B 456016140 456020536 4396 False 2280 6104 93.946 1 4310 3 chr2B.!!$F1 4309
2 TraesCS2A01G303100 chr2D 385157052 385163103 6051 False 2118 5712 92.860 1 4310 3 chr2D.!!$F1 4309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 2690 0.530288 AAGAGGAGAAGACGCTCTGC 59.470 55.000 0.00 0.00 35.26 4.26 F
2122 3848 1.666872 GTGTACCCGGAGCACACAC 60.667 63.158 21.19 14.74 41.71 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2790 4516 0.323542 CGTAGTCCAGAGGTGTCCCT 60.324 60.0 0.00 0.0 46.66 4.20 R
3423 5149 0.965363 CCATACCCTGGTGCGCTTTT 60.965 55.0 9.73 0.0 40.49 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 3.136123 CAACCCCGATGGCTGCTG 61.136 66.667 0.00 0.00 37.83 4.41
177 179 9.794685 CATGTGCTATATCTCAGTACGATAATT 57.205 33.333 0.00 0.00 31.96 1.40
224 226 8.883954 AAGCTACGAAACTTCTTACTTAAACT 57.116 30.769 0.00 0.00 0.00 2.66
225 227 8.883954 AGCTACGAAACTTCTTACTTAAACTT 57.116 30.769 0.00 0.00 0.00 2.66
226 228 8.976471 AGCTACGAAACTTCTTACTTAAACTTC 58.024 33.333 0.00 0.00 0.00 3.01
227 229 8.976471 GCTACGAAACTTCTTACTTAAACTTCT 58.024 33.333 0.00 0.00 0.00 2.85
242 284 0.694783 CTTCTACCCCCTTCCTCCCC 60.695 65.000 0.00 0.00 0.00 4.81
312 2011 7.872881 AGAGACATGATAAATCGTACGTACAT 58.127 34.615 24.50 14.13 0.00 2.29
316 2015 9.564041 GACATGATAAATCGTACGTACATTTTC 57.436 33.333 26.30 22.86 0.00 2.29
378 2077 4.282449 TCGGTAGGATCTCACAAGACAAAA 59.718 41.667 0.00 0.00 33.32 2.44
445 2146 5.046231 GGGAGGGATAACATATCTTGAGACC 60.046 48.000 0.00 0.00 0.00 3.85
482 2188 4.436998 CCTCTCGGTGCCACGACC 62.437 72.222 0.00 0.00 38.06 4.79
497 2203 1.280206 CGACCTGACCCGAACGAAAC 61.280 60.000 0.00 0.00 0.00 2.78
622 2335 2.346541 GGAGGAAAGCAAGGCCAGC 61.347 63.158 5.01 9.16 0.00 4.85
870 2584 6.808321 ATGTATATAATGTATCCGGCAGGT 57.192 37.500 1.81 0.00 39.05 4.00
938 2652 1.745653 CATCCACTCACGCTCACTCTA 59.254 52.381 0.00 0.00 0.00 2.43
942 2656 1.091537 ACTCACGCTCACTCTAGCTC 58.908 55.000 0.00 0.00 40.49 4.09
976 2690 0.530288 AAGAGGAGAAGACGCTCTGC 59.470 55.000 0.00 0.00 35.26 4.26
998 2712 3.001414 CCTGAGCTGAAACATCTGACAG 58.999 50.000 0.00 0.00 0.00 3.51
1034 2748 3.490890 GCCTCTGCTTGGCGTAAG 58.509 61.111 0.00 0.00 41.03 2.34
1276 2990 2.025719 CAGCTCGCGGAGATACAGA 58.974 57.895 6.13 0.00 0.00 3.41
2122 3848 1.666872 GTGTACCCGGAGCACACAC 60.667 63.158 21.19 14.74 41.71 3.82
2790 4516 0.740149 GCATGCCAAATCGATCACCA 59.260 50.000 6.36 0.00 0.00 4.17
2796 4522 1.065491 CCAAATCGATCACCAGGGACA 60.065 52.381 0.00 0.00 0.00 4.02
2802 4528 0.539051 GATCACCAGGGACACCTCTG 59.461 60.000 0.00 0.00 46.95 3.35
3021 4747 1.066752 CCTCAACCACACGACGTCA 59.933 57.895 17.16 0.00 0.00 4.35
3082 4808 0.950555 CTCGGCAGCAAAGTACAGCA 60.951 55.000 0.00 0.00 0.00 4.41
3206 4932 0.835543 AGCCAGGTGAAGAGAGCAGT 60.836 55.000 0.00 0.00 0.00 4.40
3237 4963 2.102578 AGCTACATTGGAAACCATGGC 58.897 47.619 13.04 0.00 31.53 4.40
3264 4990 0.257039 CCTGGAATGAGGTTGGAGGG 59.743 60.000 0.00 0.00 0.00 4.30
3317 5043 3.119919 GCATTTGCTCAGTGAGGAGAAAG 60.120 47.826 21.54 11.87 34.00 2.62
3359 5085 6.205658 GGAGCAGAAATAAAGGATGACCATAC 59.794 42.308 0.00 0.00 38.94 2.39
3423 5149 5.869579 ACATAGACTGAAAGCAAAGGAGAA 58.130 37.500 0.00 0.00 37.60 2.87
3427 5153 6.141560 AGACTGAAAGCAAAGGAGAAAAAG 57.858 37.500 0.00 0.00 37.60 2.27
3429 5155 3.705604 TGAAAGCAAAGGAGAAAAAGCG 58.294 40.909 0.00 0.00 0.00 4.68
3438 5164 1.152756 AGAAAAAGCGCACCAGGGT 60.153 52.632 11.47 0.00 0.00 4.34
3439 5165 0.109723 AGAAAAAGCGCACCAGGGTA 59.890 50.000 11.47 0.00 0.00 3.69
3440 5166 1.173913 GAAAAAGCGCACCAGGGTAT 58.826 50.000 11.47 0.00 0.00 2.73
3441 5167 0.887933 AAAAAGCGCACCAGGGTATG 59.112 50.000 11.47 0.00 0.00 2.39
3563 5289 7.915293 ACACATATTCGACCAGTTTGATTTA 57.085 32.000 0.00 0.00 0.00 1.40
3659 5385 3.620488 TCAAATGGCTGGTATGTTCTCC 58.380 45.455 0.00 0.00 0.00 3.71
3684 5410 1.337823 ACAACAGTGATCGGTACCAGC 60.338 52.381 13.54 2.64 0.00 4.85
3698 5424 4.021807 CGGTACCAGCATACACCATACATA 60.022 45.833 13.54 0.00 0.00 2.29
3699 5425 5.510009 CGGTACCAGCATACACCATACATAA 60.510 44.000 13.54 0.00 0.00 1.90
3704 5430 7.116075 ACCAGCATACACCATACATAAAAAGA 58.884 34.615 0.00 0.00 0.00 2.52
3775 5501 7.392393 TCCAGATGTTATTGATATTGCCATGAG 59.608 37.037 0.00 0.00 0.00 2.90
3776 5502 7.362660 CCAGATGTTATTGATATTGCCATGAGG 60.363 40.741 0.00 0.00 38.23 3.86
3778 5504 5.951204 TGTTATTGATATTGCCATGAGGGA 58.049 37.500 0.00 0.00 40.01 4.20
3788 5514 8.954834 ATATTGCCATGAGGGATACAAATAAA 57.045 30.769 0.00 0.00 40.01 1.40
3814 5540 2.028748 CAGAAAAGGGCAAAGTGGATGG 60.029 50.000 0.00 0.00 0.00 3.51
3817 5543 1.341080 AAGGGCAAAGTGGATGGTTG 58.659 50.000 0.00 0.00 0.00 3.77
3850 5578 8.682936 ACATATGAATGATCCAAGTCCTAAAC 57.317 34.615 10.38 0.00 36.54 2.01
3854 5582 2.542550 TGATCCAAGTCCTAAACCCGA 58.457 47.619 0.00 0.00 0.00 5.14
3900 5631 2.143122 CACCTGCGTCTAAAGCTTCAA 58.857 47.619 0.00 0.00 35.28 2.69
3906 5637 3.262420 GCGTCTAAAGCTTCAATCCAGA 58.738 45.455 0.00 0.00 0.00 3.86
3907 5638 3.062774 GCGTCTAAAGCTTCAATCCAGAC 59.937 47.826 0.00 5.48 0.00 3.51
3908 5639 4.499183 CGTCTAAAGCTTCAATCCAGACT 58.501 43.478 0.00 0.00 31.03 3.24
3910 5641 4.873259 GTCTAAAGCTTCAATCCAGACTCC 59.127 45.833 0.00 0.00 0.00 3.85
3911 5642 3.795688 AAAGCTTCAATCCAGACTCCA 57.204 42.857 0.00 0.00 0.00 3.86
3912 5643 3.347077 AAGCTTCAATCCAGACTCCAG 57.653 47.619 0.00 0.00 0.00 3.86
3913 5644 2.264455 AGCTTCAATCCAGACTCCAGT 58.736 47.619 0.00 0.00 0.00 4.00
3915 5646 3.196685 AGCTTCAATCCAGACTCCAGTAC 59.803 47.826 0.00 0.00 0.00 2.73
3916 5647 3.680196 GCTTCAATCCAGACTCCAGTACC 60.680 52.174 0.00 0.00 0.00 3.34
3917 5648 3.474798 TCAATCCAGACTCCAGTACCT 57.525 47.619 0.00 0.00 0.00 3.08
3918 5649 3.791320 TCAATCCAGACTCCAGTACCTT 58.209 45.455 0.00 0.00 0.00 3.50
3919 5650 3.769844 TCAATCCAGACTCCAGTACCTTC 59.230 47.826 0.00 0.00 0.00 3.46
3920 5651 3.767309 ATCCAGACTCCAGTACCTTCT 57.233 47.619 0.00 0.00 0.00 2.85
3921 5652 4.883021 ATCCAGACTCCAGTACCTTCTA 57.117 45.455 0.00 0.00 0.00 2.10
3922 5653 3.965694 TCCAGACTCCAGTACCTTCTAC 58.034 50.000 0.00 0.00 0.00 2.59
3928 5659 4.228824 ACTCCAGTACCTTCTACAACCAA 58.771 43.478 0.00 0.00 0.00 3.67
4003 5734 6.460399 CCAAACTGAATACCGTTGGAGAAAAA 60.460 38.462 0.00 0.00 0.00 1.94
4032 5825 6.381801 ACTTCGGCAAATTGATTTAAGTCAG 58.618 36.000 0.00 0.00 0.00 3.51
4088 5881 1.536940 TCATGTGGCACTTGATGTGG 58.463 50.000 26.67 6.11 46.27 4.17
4106 5899 2.162408 GTGGTTCAGCTGCATTTAGGTC 59.838 50.000 9.47 0.00 0.00 3.85
4168 5961 8.753133 TCATATTATTGTGCTATACCTCCTCAG 58.247 37.037 0.00 0.00 0.00 3.35
4169 5962 8.753133 CATATTATTGTGCTATACCTCCTCAGA 58.247 37.037 0.00 0.00 0.00 3.27
4170 5963 7.618019 ATTATTGTGCTATACCTCCTCAGAA 57.382 36.000 0.00 0.00 0.00 3.02
4171 5964 5.543507 ATTGTGCTATACCTCCTCAGAAG 57.456 43.478 0.00 0.00 0.00 2.85
4172 5965 3.300388 TGTGCTATACCTCCTCAGAAGG 58.700 50.000 0.00 0.00 44.89 3.46
4178 5976 1.859302 ACCTCCTCAGAAGGCTACTG 58.141 55.000 0.00 0.00 43.02 2.74
4192 5990 5.878406 AGGCTACTGTACATAGCTCAAAT 57.122 39.130 24.10 11.55 43.83 2.32
4195 5993 5.467063 GGCTACTGTACATAGCTCAAATTCC 59.533 44.000 24.10 10.80 43.83 3.01
4229 6027 4.771114 AAATACATGTAGCCACTAGCCA 57.229 40.909 11.91 0.00 45.47 4.75
4289 6088 7.308782 ACTGTCCACGAAAAATGAGATAATC 57.691 36.000 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 7.744733 TGAGATATAGCACATGGATTTTACCA 58.255 34.615 0.00 0.00 44.41 3.25
177 179 1.092348 CGTGGAGTCGTGGATGTAGA 58.908 55.000 0.00 0.00 0.00 2.59
181 183 2.259618 CTTTACGTGGAGTCGTGGATG 58.740 52.381 0.00 0.00 43.93 3.51
215 217 5.668816 AGGAAGGGGGTAGAAGTTTAAGTA 58.331 41.667 0.00 0.00 0.00 2.24
223 225 0.694783 GGGGAGGAAGGGGGTAGAAG 60.695 65.000 0.00 0.00 0.00 2.85
224 226 1.399057 GGGGAGGAAGGGGGTAGAA 59.601 63.158 0.00 0.00 0.00 2.10
225 227 2.654204 GGGGGAGGAAGGGGGTAGA 61.654 68.421 0.00 0.00 0.00 2.59
226 228 2.039724 GGGGGAGGAAGGGGGTAG 60.040 72.222 0.00 0.00 0.00 3.18
227 229 2.196225 AAGGGGGAGGAAGGGGGTA 61.196 63.158 0.00 0.00 0.00 3.69
228 230 3.563377 AAGGGGGAGGAAGGGGGT 61.563 66.667 0.00 0.00 0.00 4.95
229 231 2.696504 GAAGGGGGAGGAAGGGGG 60.697 72.222 0.00 0.00 0.00 5.40
312 2011 6.039382 GGAAAACAGAGGTTTGCTAGAGAAAA 59.961 38.462 0.00 0.00 46.20 2.29
316 2015 4.646572 AGGAAAACAGAGGTTTGCTAGAG 58.353 43.478 0.00 0.00 46.20 2.43
378 2077 2.625790 ACTCGAGTCTTTTCACTGCTCT 59.374 45.455 13.58 0.00 0.00 4.09
482 2188 1.602877 CGTCGTTTCGTTCGGGTCAG 61.603 60.000 0.00 0.00 0.00 3.51
568 2274 1.959085 TGCCTTTACAGCAGCAAGC 59.041 52.632 0.00 0.00 46.19 4.01
749 2462 4.106925 CTCAGACAGCAGGGCCCC 62.107 72.222 21.43 3.37 0.00 5.80
897 2611 2.046892 CAAGTGGAGGGCACTCGG 60.047 66.667 10.51 0.00 44.93 4.63
929 2643 1.358759 GCGAGGAGCTAGAGTGAGC 59.641 63.158 0.00 0.00 44.04 4.26
976 2690 2.289882 TGTCAGATGTTTCAGCTCAGGG 60.290 50.000 0.00 0.00 0.00 4.45
1034 2748 1.068055 CACATGCCACCAAGAAGAAGC 60.068 52.381 0.00 0.00 0.00 3.86
1035 2749 2.030540 CACACATGCCACCAAGAAGAAG 60.031 50.000 0.00 0.00 0.00 2.85
1036 2750 1.955778 CACACATGCCACCAAGAAGAA 59.044 47.619 0.00 0.00 0.00 2.52
1037 2751 1.608055 CACACATGCCACCAAGAAGA 58.392 50.000 0.00 0.00 0.00 2.87
1276 2990 3.402681 CACGTGCCCCTCCATCCT 61.403 66.667 0.82 0.00 0.00 3.24
2538 4264 4.176752 GCGAGGATGTCCACCCCC 62.177 72.222 1.30 0.00 38.89 5.40
2790 4516 0.323542 CGTAGTCCAGAGGTGTCCCT 60.324 60.000 0.00 0.00 46.66 4.20
2796 4522 2.352032 GCTGCCGTAGTCCAGAGGT 61.352 63.158 0.00 0.00 0.00 3.85
3021 4747 3.530910 CTTGAACGTCCGGGTGGCT 62.531 63.158 0.00 0.00 34.14 4.75
3069 4795 1.270839 ACCGACATGCTGTACTTTGCT 60.271 47.619 0.00 0.00 0.00 3.91
3126 4852 1.517242 CTCCAAAGGACAGTGCTGAC 58.483 55.000 6.17 0.00 0.00 3.51
3206 4932 7.265673 GTTTCCAATGTAGCTGTAGTCATCTA 58.734 38.462 0.00 0.00 0.00 1.98
3237 4963 3.710209 ACCTCATTCCAGGTCAAGAAG 57.290 47.619 0.00 0.00 44.08 2.85
3264 4990 1.367659 GACTCCTGACAGCATGCTTC 58.632 55.000 19.98 18.50 42.53 3.86
3389 5115 9.587772 TGCTTTCAGTCTATGTATTACTTCTTC 57.412 33.333 0.00 0.00 0.00 2.87
3423 5149 0.965363 CCATACCCTGGTGCGCTTTT 60.965 55.000 9.73 0.00 40.49 2.27
3438 5164 6.544928 ACACTTGACATCATCAGTACCATA 57.455 37.500 0.00 0.00 38.99 2.74
3439 5165 5.426689 ACACTTGACATCATCAGTACCAT 57.573 39.130 0.00 0.00 38.99 3.55
3440 5166 4.890158 ACACTTGACATCATCAGTACCA 57.110 40.909 0.00 0.00 38.99 3.25
3441 5167 7.849804 AAATACACTTGACATCATCAGTACC 57.150 36.000 0.00 0.00 38.99 3.34
3442 5168 8.543774 GCTAAATACACTTGACATCATCAGTAC 58.456 37.037 0.00 0.00 38.99 2.73
3593 5319 8.588290 AACAATGCTTATAATTTCACACCCTA 57.412 30.769 0.00 0.00 0.00 3.53
3616 5342 6.446318 TGAGATTTCCAAACAAGCATGTAAC 58.554 36.000 0.00 0.00 39.40 2.50
3659 5385 3.370978 GGTACCGATCACTGTTGTTGATG 59.629 47.826 0.00 0.00 0.00 3.07
3744 5470 8.416329 GGCAATATCAATAACATCTGGAAAAGT 58.584 33.333 0.00 0.00 0.00 2.66
3768 5494 6.715347 AGTTTTATTTGTATCCCTCATGGC 57.285 37.500 0.00 0.00 0.00 4.40
3775 5501 9.639601 CCTTTTCTGAAGTTTTATTTGTATCCC 57.360 33.333 0.00 0.00 0.00 3.85
3776 5502 9.639601 CCCTTTTCTGAAGTTTTATTTGTATCC 57.360 33.333 0.00 0.00 0.00 2.59
3778 5504 8.646900 TGCCCTTTTCTGAAGTTTTATTTGTAT 58.353 29.630 0.00 0.00 0.00 2.29
3788 5514 3.132824 CCACTTTGCCCTTTTCTGAAGTT 59.867 43.478 0.00 0.00 0.00 2.66
3900 5631 3.767309 AGAAGGTACTGGAGTCTGGAT 57.233 47.619 0.00 0.00 40.86 3.41
3906 5637 3.853207 TGGTTGTAGAAGGTACTGGAGT 58.147 45.455 0.00 0.00 40.86 3.85
3907 5638 4.283722 ACTTGGTTGTAGAAGGTACTGGAG 59.716 45.833 0.00 0.00 40.86 3.86
3908 5639 4.039973 CACTTGGTTGTAGAAGGTACTGGA 59.960 45.833 0.00 0.00 40.86 3.86
3910 5641 4.957296 ACACTTGGTTGTAGAAGGTACTG 58.043 43.478 0.00 0.00 40.86 2.74
3920 5651 6.014925 TCAGTCTAATGCTACACTTGGTTGTA 60.015 38.462 0.00 0.00 0.00 2.41
3921 5652 4.997395 CAGTCTAATGCTACACTTGGTTGT 59.003 41.667 0.00 0.00 0.00 3.32
3922 5653 5.237815 TCAGTCTAATGCTACACTTGGTTG 58.762 41.667 0.00 0.00 0.00 3.77
3928 5659 9.726438 ACTTAAAATTCAGTCTAATGCTACACT 57.274 29.630 0.00 0.00 0.00 3.55
3960 5691 2.319844 TGGAGCTCTGAAGTTGTCTGA 58.680 47.619 14.64 0.00 33.54 3.27
3963 5694 3.249559 CAGTTTGGAGCTCTGAAGTTGTC 59.750 47.826 14.64 0.00 0.00 3.18
4003 5734 4.853924 AATCAATTTGCCGAAGTCTGTT 57.146 36.364 0.00 0.00 0.00 3.16
4005 5736 6.381801 ACTTAAATCAATTTGCCGAAGTCTG 58.618 36.000 0.00 0.00 0.00 3.51
4006 5737 6.206634 TGACTTAAATCAATTTGCCGAAGTCT 59.793 34.615 19.53 0.00 39.73 3.24
4007 5738 6.378582 TGACTTAAATCAATTTGCCGAAGTC 58.621 36.000 15.53 15.53 39.60 3.01
4008 5739 6.325919 TGACTTAAATCAATTTGCCGAAGT 57.674 33.333 0.00 0.70 31.29 3.01
4010 5741 5.708948 CCTGACTTAAATCAATTTGCCGAA 58.291 37.500 0.00 0.00 0.00 4.30
4013 5806 4.819769 TGCCTGACTTAAATCAATTTGCC 58.180 39.130 0.00 0.00 0.00 4.52
4032 5825 1.565305 GTGATCGTCTGATGACTGCC 58.435 55.000 0.86 0.00 40.86 4.85
4088 5881 3.623510 GGTAGACCTAAATGCAGCTGAAC 59.376 47.826 20.43 0.12 0.00 3.18
4106 5899 4.872691 GTGATCACCAGAATGTTCAGGTAG 59.127 45.833 15.31 5.38 44.12 3.18
4168 5961 4.920640 TGAGCTATGTACAGTAGCCTTC 57.079 45.455 22.72 17.90 44.35 3.46
4169 5962 5.677319 TTTGAGCTATGTACAGTAGCCTT 57.323 39.130 22.72 12.63 44.35 4.35
4170 5963 5.878406 ATTTGAGCTATGTACAGTAGCCT 57.122 39.130 22.72 15.12 44.35 4.58
4171 5964 5.467063 GGAATTTGAGCTATGTACAGTAGCC 59.533 44.000 22.72 17.49 44.35 3.93
4172 5965 5.175856 CGGAATTTGAGCTATGTACAGTAGC 59.824 44.000 20.57 20.57 43.77 3.58
4178 5976 5.585047 ACCTTTCGGAATTTGAGCTATGTAC 59.415 40.000 0.00 0.00 0.00 2.90
4192 5990 6.070078 ACATGTATTTACCCTACCTTTCGGAA 60.070 38.462 0.00 0.00 0.00 4.30
4195 5993 6.423001 GCTACATGTATTTACCCTACCTTTCG 59.577 42.308 5.91 0.00 0.00 3.46
4202 6000 6.014840 GCTAGTGGCTACATGTATTTACCCTA 60.015 42.308 5.91 8.46 38.06 3.53
4204 6002 4.995487 GCTAGTGGCTACATGTATTTACCC 59.005 45.833 5.91 3.32 38.06 3.69
4212 6010 2.039746 TGTTTGGCTAGTGGCTACATGT 59.960 45.455 2.69 2.69 41.46 3.21
4213 6011 2.679837 CTGTTTGGCTAGTGGCTACATG 59.320 50.000 2.02 0.00 41.46 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.