Multiple sequence alignment - TraesCS2A01G302100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G302100 chr2A 100.000 5727 0 0 1 5727 517803578 517809304 0.000000e+00 10576.0
1 TraesCS2A01G302100 chr2B 94.449 3369 118 39 219 3561 453747600 453750925 0.000000e+00 5121.0
2 TraesCS2A01G302100 chr2B 94.428 1364 64 7 3544 4901 453751100 453752457 0.000000e+00 2087.0
3 TraesCS2A01G302100 chr2D 96.425 2993 72 19 269 3248 383285698 383288668 0.000000e+00 4902.0
4 TraesCS2A01G302100 chr2D 93.349 2150 68 21 3249 5343 383288637 383290766 0.000000e+00 3109.0
5 TraesCS2A01G302100 chr2D 91.393 488 34 4 5241 5727 383290786 383291266 0.000000e+00 662.0
6 TraesCS2A01G302100 chr3B 88.182 220 26 0 1 220 71816819 71816600 4.400000e-66 263.0
7 TraesCS2A01G302100 chr3B 87.857 140 16 1 79 218 561513127 561513265 4.590000e-36 163.0
8 TraesCS2A01G302100 chr1B 86.161 224 30 1 1 223 617926696 617926473 2.060000e-59 241.0
9 TraesCS2A01G302100 chr5B 85.973 221 30 1 1 220 679367531 679367311 9.590000e-58 235.0
10 TraesCS2A01G302100 chr5B 100.000 28 0 0 722 749 534952627 534952654 1.000000e-02 52.8
11 TraesCS2A01G302100 chr1D 85.841 226 25 3 1 220 71638086 71637862 3.450000e-57 233.0
12 TraesCS2A01G302100 chr7A 88.983 118 13 0 13 130 721161891 721162008 4.620000e-31 147.0
13 TraesCS2A01G302100 chr3D 82.418 91 10 6 35 122 27558863 27558776 2.210000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G302100 chr2A 517803578 517809304 5726 False 10576 10576 100.000000 1 5727 1 chr2A.!!$F1 5726
1 TraesCS2A01G302100 chr2B 453747600 453752457 4857 False 3604 5121 94.438500 219 4901 2 chr2B.!!$F1 4682
2 TraesCS2A01G302100 chr2D 383285698 383291266 5568 False 2891 4902 93.722333 269 5727 3 chr2D.!!$F1 5458

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.038166 TTCCCTGTGGGTTGATGAGC 59.962 55.0 2.25 0.0 44.74 4.26 F
176 177 0.476771 AAGGGTTTGGTGGACGATGT 59.523 50.0 0.00 0.0 0.00 3.06 F
372 373 1.212616 GCAGCTGAGTAGGCGTAATG 58.787 55.0 20.43 0.0 34.52 1.90 F
1437 1449 1.663695 ATTGCCGCTGTGGTGTATAC 58.336 50.0 9.31 0.0 41.21 1.47 F
2874 2930 0.695347 AGTTTGGCCCTTCTCTCCAG 59.305 55.0 0.00 0.0 0.00 3.86 F
3155 3215 0.727398 GTCCGACACTTGCCTAATGC 59.273 55.0 0.00 0.0 41.77 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 1565 0.615331 CCTTCTTGCCAGTAGCTCCA 59.385 55.000 0.00 0.00 44.23 3.86 R
1682 1736 1.625818 AGCAGGATTTGAACTCGGAGT 59.374 47.619 4.45 4.45 0.00 3.85 R
1684 1738 2.093658 GGTAGCAGGATTTGAACTCGGA 60.094 50.000 0.00 0.00 0.00 4.55 R
3140 3200 0.179189 GCACGCATTAGGCAAGTGTC 60.179 55.000 0.00 0.00 45.17 3.67 R
4453 4715 0.793250 GCTTCTTCACTTCCTGCGAC 59.207 55.000 0.00 0.00 0.00 5.19 R
5040 5334 0.173708 CTAACGACCCTGACCAGCTC 59.826 60.000 0.00 0.00 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.892130 GATCTATTCGGATTATTTGGTCCTTAT 57.108 33.333 0.00 0.00 32.19 1.73
27 28 9.892130 ATCTATTCGGATTATTTGGTCCTTATC 57.108 33.333 0.00 0.00 32.19 1.75
28 29 8.876181 TCTATTCGGATTATTTGGTCCTTATCA 58.124 33.333 0.00 0.00 32.19 2.15
29 30 9.672673 CTATTCGGATTATTTGGTCCTTATCAT 57.327 33.333 0.00 0.00 32.19 2.45
31 32 9.672673 ATTCGGATTATTTGGTCCTTATCATAG 57.327 33.333 0.00 0.00 32.19 2.23
32 33 7.620880 TCGGATTATTTGGTCCTTATCATAGG 58.379 38.462 0.00 0.00 36.59 2.57
33 34 6.316390 CGGATTATTTGGTCCTTATCATAGGC 59.684 42.308 0.00 0.00 35.15 3.93
34 35 7.406104 GGATTATTTGGTCCTTATCATAGGCT 58.594 38.462 0.00 0.00 35.15 4.58
35 36 8.548877 GGATTATTTGGTCCTTATCATAGGCTA 58.451 37.037 0.00 0.00 35.15 3.93
39 40 8.686739 ATTTGGTCCTTATCATAGGCTATACT 57.313 34.615 6.72 0.08 35.15 2.12
40 41 7.719871 TTGGTCCTTATCATAGGCTATACTC 57.280 40.000 6.72 0.00 35.15 2.59
41 42 6.195700 TGGTCCTTATCATAGGCTATACTCC 58.804 44.000 6.72 2.97 35.15 3.85
42 43 5.299782 GGTCCTTATCATAGGCTATACTCCG 59.700 48.000 6.72 0.00 35.15 4.63
43 44 5.299782 GTCCTTATCATAGGCTATACTCCGG 59.700 48.000 6.72 0.00 35.15 5.14
44 45 5.044328 TCCTTATCATAGGCTATACTCCGGT 60.044 44.000 6.72 0.00 35.15 5.28
45 46 5.067936 CCTTATCATAGGCTATACTCCGGTG 59.932 48.000 6.72 0.00 0.00 4.94
46 47 3.520691 TCATAGGCTATACTCCGGTGT 57.479 47.619 14.50 14.50 0.00 4.16
47 48 3.418995 TCATAGGCTATACTCCGGTGTC 58.581 50.000 13.38 0.00 0.00 3.67
48 49 3.074094 TCATAGGCTATACTCCGGTGTCT 59.926 47.826 13.38 6.08 0.00 3.41
49 50 2.456073 AGGCTATACTCCGGTGTCTT 57.544 50.000 13.38 4.90 0.00 3.01
50 51 2.748388 AGGCTATACTCCGGTGTCTTT 58.252 47.619 13.38 2.34 0.00 2.52
51 52 3.105283 AGGCTATACTCCGGTGTCTTTT 58.895 45.455 13.38 0.00 0.00 2.27
52 53 3.118738 AGGCTATACTCCGGTGTCTTTTG 60.119 47.826 13.38 2.35 0.00 2.44
53 54 3.369157 GGCTATACTCCGGTGTCTTTTGT 60.369 47.826 13.38 0.00 0.00 2.83
54 55 4.251268 GCTATACTCCGGTGTCTTTTGTT 58.749 43.478 13.38 0.00 0.00 2.83
55 56 4.329256 GCTATACTCCGGTGTCTTTTGTTC 59.671 45.833 13.38 0.00 0.00 3.18
56 57 2.702592 ACTCCGGTGTCTTTTGTTCA 57.297 45.000 2.61 0.00 0.00 3.18
57 58 2.285977 ACTCCGGTGTCTTTTGTTCAC 58.714 47.619 2.61 0.00 0.00 3.18
58 59 2.093128 ACTCCGGTGTCTTTTGTTCACT 60.093 45.455 2.61 0.00 33.30 3.41
59 60 2.285083 TCCGGTGTCTTTTGTTCACTG 58.715 47.619 0.00 0.00 37.95 3.66
60 61 1.268539 CCGGTGTCTTTTGTTCACTGC 60.269 52.381 0.00 0.00 37.20 4.40
61 62 1.268539 CGGTGTCTTTTGTTCACTGCC 60.269 52.381 0.00 0.00 32.90 4.85
62 63 1.067060 GGTGTCTTTTGTTCACTGCCC 59.933 52.381 0.00 0.00 33.30 5.36
63 64 2.024414 GTGTCTTTTGTTCACTGCCCT 58.976 47.619 0.00 0.00 0.00 5.19
64 65 3.211045 GTGTCTTTTGTTCACTGCCCTA 58.789 45.455 0.00 0.00 0.00 3.53
65 66 3.251004 GTGTCTTTTGTTCACTGCCCTAG 59.749 47.826 0.00 0.00 0.00 3.02
66 67 2.814336 GTCTTTTGTTCACTGCCCTAGG 59.186 50.000 0.06 0.06 0.00 3.02
67 68 2.162681 CTTTTGTTCACTGCCCTAGGG 58.837 52.381 24.89 24.89 38.57 3.53
68 69 1.440618 TTTGTTCACTGCCCTAGGGA 58.559 50.000 33.21 15.40 36.93 4.20
69 70 0.984230 TTGTTCACTGCCCTAGGGAG 59.016 55.000 33.21 25.24 46.85 4.30
70 71 0.909610 TGTTCACTGCCCTAGGGAGG 60.910 60.000 33.21 23.30 45.71 4.30
71 72 0.910088 GTTCACTGCCCTAGGGAGGT 60.910 60.000 33.21 23.97 45.71 3.85
72 73 0.714180 TTCACTGCCCTAGGGAGGTA 59.286 55.000 33.21 12.76 45.71 3.08
73 74 0.714180 TCACTGCCCTAGGGAGGTAA 59.286 55.000 33.21 12.12 45.71 2.85
74 75 1.079825 TCACTGCCCTAGGGAGGTAAA 59.920 52.381 33.21 15.77 45.71 2.01
75 76 1.209747 CACTGCCCTAGGGAGGTAAAC 59.790 57.143 33.21 12.25 45.71 2.01
76 77 1.080666 ACTGCCCTAGGGAGGTAAACT 59.919 52.381 33.21 6.06 45.71 2.66
77 78 1.763545 CTGCCCTAGGGAGGTAAACTC 59.236 57.143 33.21 10.68 45.84 3.01
78 79 1.365028 TGCCCTAGGGAGGTAAACTCT 59.635 52.381 33.21 0.00 45.83 3.24
79 80 1.763545 GCCCTAGGGAGGTAAACTCTG 59.236 57.143 33.21 0.00 45.83 3.35
80 81 2.893153 GCCCTAGGGAGGTAAACTCTGT 60.893 54.545 33.21 0.00 45.83 3.41
81 82 3.032459 CCCTAGGGAGGTAAACTCTGTC 58.968 54.545 24.99 0.00 45.83 3.51
82 83 3.565890 CCCTAGGGAGGTAAACTCTGTCA 60.566 52.174 24.99 0.00 45.83 3.58
83 84 3.447944 CCTAGGGAGGTAAACTCTGTCAC 59.552 52.174 0.00 0.00 45.83 3.67
84 85 3.261818 AGGGAGGTAAACTCTGTCACT 57.738 47.619 0.00 0.00 45.83 3.41
85 86 4.399483 AGGGAGGTAAACTCTGTCACTA 57.601 45.455 0.00 0.00 45.83 2.74
86 87 4.748701 AGGGAGGTAAACTCTGTCACTAA 58.251 43.478 0.00 0.00 45.83 2.24
87 88 5.342866 AGGGAGGTAAACTCTGTCACTAAT 58.657 41.667 0.00 0.00 45.83 1.73
88 89 5.187967 AGGGAGGTAAACTCTGTCACTAATG 59.812 44.000 0.00 0.00 45.83 1.90
89 90 5.046520 GGGAGGTAAACTCTGTCACTAATGT 60.047 44.000 0.00 0.00 45.83 2.71
90 91 6.465084 GGAGGTAAACTCTGTCACTAATGTT 58.535 40.000 0.00 0.00 45.83 2.71
91 92 6.935208 GGAGGTAAACTCTGTCACTAATGTTT 59.065 38.462 0.00 0.00 45.83 2.83
92 93 7.444487 GGAGGTAAACTCTGTCACTAATGTTTT 59.556 37.037 0.00 0.00 45.83 2.43
93 94 9.485206 GAGGTAAACTCTGTCACTAATGTTTTA 57.515 33.333 0.00 0.00 43.14 1.52
94 95 9.490379 AGGTAAACTCTGTCACTAATGTTTTAG 57.510 33.333 0.00 0.00 40.62 1.85
95 96 8.228464 GGTAAACTCTGTCACTAATGTTTTAGC 58.772 37.037 0.00 0.00 38.74 3.09
96 97 8.989980 GTAAACTCTGTCACTAATGTTTTAGCT 58.010 33.333 0.00 0.00 38.74 3.32
98 99 8.764524 AACTCTGTCACTAATGTTTTAGCTAG 57.235 34.615 0.00 0.00 38.74 3.42
99 100 7.324178 ACTCTGTCACTAATGTTTTAGCTAGG 58.676 38.462 0.00 0.00 38.74 3.02
100 101 6.106673 TCTGTCACTAATGTTTTAGCTAGGC 58.893 40.000 0.00 0.00 38.74 3.93
101 102 6.049955 TGTCACTAATGTTTTAGCTAGGCT 57.950 37.500 0.00 0.00 43.41 4.58
102 103 7.123697 TCTGTCACTAATGTTTTAGCTAGGCTA 59.876 37.037 0.00 0.00 40.44 3.93
103 104 7.265673 TGTCACTAATGTTTTAGCTAGGCTAG 58.734 38.462 17.33 17.33 42.34 3.42
111 112 2.026301 GCTAGGCTAGCGGTGTCG 59.974 66.667 28.98 0.00 42.62 4.35
112 113 2.722487 CTAGGCTAGCGGTGTCGG 59.278 66.667 8.91 0.00 36.79 4.79
113 114 1.822613 CTAGGCTAGCGGTGTCGGA 60.823 63.158 8.91 0.00 36.79 4.55
114 115 1.152819 TAGGCTAGCGGTGTCGGAT 60.153 57.895 9.00 0.00 36.79 4.18
115 116 1.170919 TAGGCTAGCGGTGTCGGATC 61.171 60.000 9.00 0.00 36.79 3.36
116 117 2.027751 GCTAGCGGTGTCGGATCC 59.972 66.667 0.00 0.00 36.79 3.36
117 118 2.782222 GCTAGCGGTGTCGGATCCA 61.782 63.158 13.41 0.00 36.79 3.41
118 119 1.065928 CTAGCGGTGTCGGATCCAC 59.934 63.158 13.41 9.77 36.79 4.02
123 124 4.934989 GTGTCGGATCCACCTTCC 57.065 61.111 13.41 0.00 36.31 3.46
124 125 1.221021 GTGTCGGATCCACCTTCCC 59.779 63.158 13.41 0.00 36.31 3.97
125 126 1.080354 TGTCGGATCCACCTTCCCT 59.920 57.895 13.41 0.00 36.31 4.20
126 127 1.264749 TGTCGGATCCACCTTCCCTG 61.265 60.000 13.41 0.00 36.31 4.45
127 128 1.080354 TCGGATCCACCTTCCCTGT 59.920 57.895 13.41 0.00 36.31 4.00
128 129 1.221840 CGGATCCACCTTCCCTGTG 59.778 63.158 13.41 0.00 36.31 3.66
132 133 0.776080 ATCCACCTTCCCTGTGGGTT 60.776 55.000 9.38 0.00 44.89 4.11
133 134 3.020927 ATCCACCTTCCCTGTGGGTTG 62.021 57.143 9.38 0.00 44.89 3.77
134 135 1.843421 CACCTTCCCTGTGGGTTGA 59.157 57.895 2.25 0.00 44.74 3.18
135 136 0.405585 CACCTTCCCTGTGGGTTGAT 59.594 55.000 2.25 0.00 44.74 2.57
136 137 0.405585 ACCTTCCCTGTGGGTTGATG 59.594 55.000 2.25 0.00 44.74 3.07
137 138 0.698238 CCTTCCCTGTGGGTTGATGA 59.302 55.000 2.25 0.00 44.74 2.92
138 139 1.340405 CCTTCCCTGTGGGTTGATGAG 60.340 57.143 2.25 0.00 44.74 2.90
139 140 0.038166 TTCCCTGTGGGTTGATGAGC 59.962 55.000 2.25 0.00 44.74 4.26
140 141 1.379044 CCCTGTGGGTTGATGAGCC 60.379 63.158 0.00 0.00 46.43 4.70
145 146 2.438434 GGGTTGATGAGCCACCGG 60.438 66.667 0.00 0.00 45.52 5.28
157 158 2.734276 GCCACCGGCTTTTATTTTGA 57.266 45.000 0.00 0.00 46.69 2.69
158 159 3.033368 GCCACCGGCTTTTATTTTGAA 57.967 42.857 0.00 0.00 46.69 2.69
159 160 2.993220 GCCACCGGCTTTTATTTTGAAG 59.007 45.455 0.00 0.00 46.69 3.02
160 161 3.584834 CCACCGGCTTTTATTTTGAAGG 58.415 45.455 0.00 0.00 0.00 3.46
161 162 3.584834 CACCGGCTTTTATTTTGAAGGG 58.415 45.455 0.00 0.00 0.00 3.95
162 163 3.006430 CACCGGCTTTTATTTTGAAGGGT 59.994 43.478 0.00 0.00 0.00 4.34
163 164 3.644265 ACCGGCTTTTATTTTGAAGGGTT 59.356 39.130 0.00 0.00 0.00 4.11
164 165 4.101898 ACCGGCTTTTATTTTGAAGGGTTT 59.898 37.500 0.00 0.00 0.00 3.27
165 166 4.450757 CCGGCTTTTATTTTGAAGGGTTTG 59.549 41.667 0.00 0.00 0.00 2.93
166 167 4.450757 CGGCTTTTATTTTGAAGGGTTTGG 59.549 41.667 0.00 0.00 0.00 3.28
167 168 5.373222 GGCTTTTATTTTGAAGGGTTTGGT 58.627 37.500 0.00 0.00 0.00 3.67
168 169 5.238432 GGCTTTTATTTTGAAGGGTTTGGTG 59.762 40.000 0.00 0.00 0.00 4.17
169 170 5.238432 GCTTTTATTTTGAAGGGTTTGGTGG 59.762 40.000 0.00 0.00 0.00 4.61
170 171 6.561519 TTTTATTTTGAAGGGTTTGGTGGA 57.438 33.333 0.00 0.00 0.00 4.02
171 172 5.538849 TTATTTTGAAGGGTTTGGTGGAC 57.461 39.130 0.00 0.00 0.00 4.02
172 173 1.394618 TTTGAAGGGTTTGGTGGACG 58.605 50.000 0.00 0.00 0.00 4.79
173 174 0.547075 TTGAAGGGTTTGGTGGACGA 59.453 50.000 0.00 0.00 0.00 4.20
174 175 0.768622 TGAAGGGTTTGGTGGACGAT 59.231 50.000 0.00 0.00 0.00 3.73
175 176 1.165270 GAAGGGTTTGGTGGACGATG 58.835 55.000 0.00 0.00 0.00 3.84
176 177 0.476771 AAGGGTTTGGTGGACGATGT 59.523 50.000 0.00 0.00 0.00 3.06
177 178 1.354101 AGGGTTTGGTGGACGATGTA 58.646 50.000 0.00 0.00 0.00 2.29
178 179 1.700739 AGGGTTTGGTGGACGATGTAA 59.299 47.619 0.00 0.00 0.00 2.41
179 180 1.808343 GGGTTTGGTGGACGATGTAAC 59.192 52.381 0.00 0.00 0.00 2.50
180 181 2.496111 GGTTTGGTGGACGATGTAACA 58.504 47.619 0.00 0.00 0.00 2.41
181 182 2.224784 GGTTTGGTGGACGATGTAACAC 59.775 50.000 0.00 0.00 0.00 3.32
182 183 3.135994 GTTTGGTGGACGATGTAACACT 58.864 45.455 0.00 0.00 34.42 3.55
183 184 3.478857 TTGGTGGACGATGTAACACTT 57.521 42.857 0.00 0.00 34.42 3.16
184 185 3.034721 TGGTGGACGATGTAACACTTC 57.965 47.619 0.00 0.00 34.42 3.01
185 186 2.631062 TGGTGGACGATGTAACACTTCT 59.369 45.455 0.00 0.00 34.42 2.85
186 187 3.070446 TGGTGGACGATGTAACACTTCTT 59.930 43.478 0.00 0.00 34.42 2.52
187 188 4.062991 GGTGGACGATGTAACACTTCTTT 58.937 43.478 0.00 0.00 34.42 2.52
188 189 4.084013 GGTGGACGATGTAACACTTCTTTG 60.084 45.833 0.00 0.00 34.42 2.77
189 190 4.748102 GTGGACGATGTAACACTTCTTTGA 59.252 41.667 0.00 0.00 0.00 2.69
190 191 5.408604 GTGGACGATGTAACACTTCTTTGAT 59.591 40.000 0.00 0.00 0.00 2.57
191 192 5.995282 TGGACGATGTAACACTTCTTTGATT 59.005 36.000 0.00 0.00 0.00 2.57
192 193 6.147164 TGGACGATGTAACACTTCTTTGATTC 59.853 38.462 0.00 0.00 0.00 2.52
193 194 6.147164 GGACGATGTAACACTTCTTTGATTCA 59.853 38.462 0.00 0.00 0.00 2.57
194 195 7.307751 GGACGATGTAACACTTCTTTGATTCAA 60.308 37.037 0.00 0.00 0.00 2.69
195 196 8.099364 ACGATGTAACACTTCTTTGATTCAAT 57.901 30.769 0.00 0.00 0.00 2.57
196 197 9.214957 ACGATGTAACACTTCTTTGATTCAATA 57.785 29.630 0.00 0.00 0.00 1.90
203 204 9.822185 AACACTTCTTTGATTCAATAAAAGCTT 57.178 25.926 2.50 0.00 31.86 3.74
204 205 9.468532 ACACTTCTTTGATTCAATAAAAGCTTC 57.531 29.630 0.00 0.00 31.86 3.86
205 206 8.919661 CACTTCTTTGATTCAATAAAAGCTTCC 58.080 33.333 0.00 0.00 31.86 3.46
206 207 7.809806 ACTTCTTTGATTCAATAAAAGCTTCCG 59.190 33.333 0.00 0.00 31.86 4.30
207 208 7.447374 TCTTTGATTCAATAAAAGCTTCCGA 57.553 32.000 0.00 0.00 31.86 4.55
208 209 7.881142 TCTTTGATTCAATAAAAGCTTCCGAA 58.119 30.769 0.00 0.00 31.86 4.30
209 210 8.023128 TCTTTGATTCAATAAAAGCTTCCGAAG 58.977 33.333 0.00 3.56 31.86 3.79
210 211 6.817765 TGATTCAATAAAAGCTTCCGAAGT 57.182 33.333 9.87 0.00 0.00 3.01
211 212 7.214467 TGATTCAATAAAAGCTTCCGAAGTT 57.786 32.000 9.87 0.53 0.00 2.66
212 213 7.657336 TGATTCAATAAAAGCTTCCGAAGTTT 58.343 30.769 9.87 7.18 33.04 2.66
213 214 7.807907 TGATTCAATAAAAGCTTCCGAAGTTTC 59.192 33.333 10.29 0.00 30.19 2.78
214 215 6.627395 TCAATAAAAGCTTCCGAAGTTTCA 57.373 33.333 10.29 3.29 30.19 2.69
215 216 7.033530 TCAATAAAAGCTTCCGAAGTTTCAA 57.966 32.000 10.29 3.29 30.19 2.69
216 217 7.484975 TCAATAAAAGCTTCCGAAGTTTCAAA 58.515 30.769 10.29 1.14 30.19 2.69
217 218 7.976734 TCAATAAAAGCTTCCGAAGTTTCAAAA 59.023 29.630 10.29 0.00 30.19 2.44
218 219 8.599774 CAATAAAAGCTTCCGAAGTTTCAAAAA 58.400 29.630 10.29 0.00 30.19 1.94
257 258 6.727824 ATGTACTTCCTCAGTTCGAAATTG 57.272 37.500 0.00 1.62 36.88 2.32
258 259 5.607477 TGTACTTCCTCAGTTCGAAATTGT 58.393 37.500 0.00 0.00 36.88 2.71
271 272 4.242475 TCGAAATTGTAGTTGACGCTGAT 58.758 39.130 0.00 0.00 0.00 2.90
357 358 7.483307 TCTTTTGAGGATTAATGTATTGCAGC 58.517 34.615 0.00 0.00 0.00 5.25
372 373 1.212616 GCAGCTGAGTAGGCGTAATG 58.787 55.000 20.43 0.00 34.52 1.90
389 390 5.820522 CGTAATGCGGCTATACGTTTTCGA 61.821 45.833 21.55 0.00 40.50 3.71
466 467 3.672295 CTTCACCGCCTGCTCCCTC 62.672 68.421 0.00 0.00 0.00 4.30
497 498 4.436998 CCCTCACCGACTCACCGC 62.437 72.222 0.00 0.00 0.00 5.68
652 653 2.186160 CAAGCAGCGGTGTTGGACA 61.186 57.895 17.07 0.00 0.00 4.02
696 698 1.749258 GAGGGGGCGGTGATTTGAC 60.749 63.158 0.00 0.00 0.00 3.18
719 721 2.036098 TGGAAGTAGCGGACGGGA 59.964 61.111 0.00 0.00 0.00 5.14
720 722 2.280823 CTGGAAGTAGCGGACGGGAC 62.281 65.000 0.00 0.00 0.00 4.46
777 788 2.303022 TCCACCACTTTGATCCAGACTC 59.697 50.000 0.00 0.00 0.00 3.36
1033 1044 3.858503 GCTGGCTCAAAACACATTCTTCC 60.859 47.826 0.00 0.00 0.00 3.46
1034 1045 2.627699 TGGCTCAAAACACATTCTTCCC 59.372 45.455 0.00 0.00 0.00 3.97
1035 1046 2.893489 GGCTCAAAACACATTCTTCCCT 59.107 45.455 0.00 0.00 0.00 4.20
1036 1047 3.057245 GGCTCAAAACACATTCTTCCCTC 60.057 47.826 0.00 0.00 0.00 4.30
1219 1231 6.844097 TTTTGTTCCTATTATCAACCCACC 57.156 37.500 0.00 0.00 0.00 4.61
1437 1449 1.663695 ATTGCCGCTGTGGTGTATAC 58.336 50.000 9.31 0.00 41.21 1.47
1496 1508 5.136828 TGTTAGGTATTGCCATATTGGTGG 58.863 41.667 0.00 0.00 40.46 4.61
1553 1565 5.456548 TCTGTGTTCATGTTGATTTGCAT 57.543 34.783 0.00 0.00 0.00 3.96
1647 1667 7.709613 GTCTAAGGATCGTTGCTAAATTTAGGA 59.290 37.037 23.37 19.35 0.00 2.94
1666 1720 4.242336 GGAAGTCCTCCATCAAATCCTT 57.758 45.455 0.00 0.00 44.67 3.36
1667 1721 4.604156 GGAAGTCCTCCATCAAATCCTTT 58.396 43.478 0.00 0.00 44.67 3.11
1668 1722 4.400567 GGAAGTCCTCCATCAAATCCTTTG 59.599 45.833 0.00 0.00 44.67 2.77
1669 1723 3.973425 AGTCCTCCATCAAATCCTTTGG 58.027 45.455 0.19 0.00 40.98 3.28
1670 1724 3.593328 AGTCCTCCATCAAATCCTTTGGA 59.407 43.478 0.19 0.00 40.98 3.53
1674 1728 4.402616 TCCATCAAATCCTTTGGAGGTT 57.597 40.909 0.19 0.00 43.97 3.50
1675 1729 4.344104 TCCATCAAATCCTTTGGAGGTTC 58.656 43.478 0.19 0.00 43.97 3.62
1676 1730 4.044571 TCCATCAAATCCTTTGGAGGTTCT 59.955 41.667 0.19 0.00 43.97 3.01
1677 1731 5.252863 TCCATCAAATCCTTTGGAGGTTCTA 59.747 40.000 0.19 0.00 43.97 2.10
1678 1732 6.068853 TCCATCAAATCCTTTGGAGGTTCTAT 60.069 38.462 0.19 0.00 43.97 1.98
1679 1733 7.128728 TCCATCAAATCCTTTGGAGGTTCTATA 59.871 37.037 0.19 0.00 43.97 1.31
1680 1734 7.946776 CCATCAAATCCTTTGGAGGTTCTATAT 59.053 37.037 0.19 0.00 43.97 0.86
1681 1735 9.007901 CATCAAATCCTTTGGAGGTTCTATATC 57.992 37.037 0.19 0.00 43.97 1.63
1682 1736 8.101309 TCAAATCCTTTGGAGGTTCTATATCA 57.899 34.615 0.19 0.00 43.97 2.15
1683 1737 7.993183 TCAAATCCTTTGGAGGTTCTATATCAC 59.007 37.037 0.19 0.00 43.97 3.06
1684 1738 7.698163 AATCCTTTGGAGGTTCTATATCACT 57.302 36.000 0.00 0.00 43.97 3.41
1685 1739 6.732896 TCCTTTGGAGGTTCTATATCACTC 57.267 41.667 0.00 0.00 43.97 3.51
1686 1740 5.602978 TCCTTTGGAGGTTCTATATCACTCC 59.397 44.000 0.00 0.00 46.14 3.85
1690 1744 4.400120 GGAGGTTCTATATCACTCCGAGT 58.600 47.826 0.00 0.00 38.44 4.18
1691 1745 4.828387 GGAGGTTCTATATCACTCCGAGTT 59.172 45.833 0.00 0.00 38.44 3.01
1692 1746 5.048573 GGAGGTTCTATATCACTCCGAGTTC 60.049 48.000 0.00 0.00 38.44 3.01
1693 1747 5.446860 AGGTTCTATATCACTCCGAGTTCA 58.553 41.667 0.00 0.00 0.00 3.18
1694 1748 5.892119 AGGTTCTATATCACTCCGAGTTCAA 59.108 40.000 0.00 0.00 0.00 2.69
1695 1749 6.380274 AGGTTCTATATCACTCCGAGTTCAAA 59.620 38.462 0.00 0.00 0.00 2.69
1696 1750 7.070074 AGGTTCTATATCACTCCGAGTTCAAAT 59.930 37.037 0.00 0.00 0.00 2.32
1697 1751 7.382759 GGTTCTATATCACTCCGAGTTCAAATC 59.617 40.741 0.00 0.00 0.00 2.17
1698 1752 6.982852 TCTATATCACTCCGAGTTCAAATCC 58.017 40.000 0.00 0.00 0.00 3.01
1699 1753 5.878406 ATATCACTCCGAGTTCAAATCCT 57.122 39.130 0.00 0.00 0.00 3.24
1845 1899 5.889289 TGCATATCATGGCAATGCTGTATAT 59.111 36.000 19.34 1.65 44.96 0.86
1900 1954 8.784043 ACTTGATGTGTTCTCCAGTTTATTTAC 58.216 33.333 0.00 0.00 0.00 2.01
1904 1958 8.691661 ATGTGTTCTCCAGTTTATTTACAACT 57.308 30.769 0.00 0.00 34.67 3.16
1905 1959 8.514330 TGTGTTCTCCAGTTTATTTACAACTT 57.486 30.769 0.00 0.00 31.83 2.66
2050 2104 3.940221 AGTGAGTCGGTGACTACATCTAC 59.060 47.826 0.00 0.00 43.53 2.59
2290 2345 3.055819 TCTCTGCTGTTCCACATTAGGTC 60.056 47.826 0.00 0.00 0.00 3.85
2487 2542 9.973661 TCCTTTTCCATCTTAGTGATAAAATGA 57.026 29.630 0.00 0.00 33.36 2.57
2773 2829 9.260002 CTTAAGAGAAGATCCTATTTCAGCTTC 57.740 37.037 0.00 0.00 33.72 3.86
2805 2861 6.184789 ACAGTAGGGTTTGACAAAAGAAAGA 58.815 36.000 1.27 0.00 0.00 2.52
2813 2869 7.274904 GGGTTTGACAAAAGAAAGAACTGTTAC 59.725 37.037 1.27 0.00 0.00 2.50
2874 2930 0.695347 AGTTTGGCCCTTCTCTCCAG 59.305 55.000 0.00 0.00 0.00 3.86
3046 3106 9.019656 ACTATTTGCAATAGTCACATGGTTAAA 57.980 29.630 0.00 0.00 29.47 1.52
3140 3200 4.939509 AAGTCAATATTTGGAACGTCCG 57.060 40.909 0.00 0.00 40.17 4.79
3155 3215 0.727398 GTCCGACACTTGCCTAATGC 59.273 55.000 0.00 0.00 41.77 3.56
3282 3342 2.606108 TGCATGTTAGTCTGCTGTACG 58.394 47.619 0.00 0.00 39.16 3.67
3347 3407 7.174599 GCTTAATTGACATAGGCTGATGAGAAT 59.825 37.037 0.00 0.00 0.00 2.40
3350 3410 5.211174 TGACATAGGCTGATGAGAATCTG 57.789 43.478 0.00 0.00 34.92 2.90
3383 3443 8.281212 ACTTACCTGGACAATTTGCTAATTAG 57.719 34.615 8.20 8.20 32.75 1.73
3410 3470 4.877773 TGGTTTGCCCAAAGGATACATAT 58.122 39.130 0.00 0.00 41.50 1.78
3465 3525 3.902881 TTTGCCATCAACCTTTTGTGT 57.097 38.095 0.00 0.00 34.02 3.72
3586 3846 7.907389 AGTAAACATATTCAGACCTCTGTTGA 58.093 34.615 2.25 0.00 44.12 3.18
3613 3875 7.255590 CCAAATCAACTTGTCCATAAGTGAACT 60.256 37.037 0.00 0.00 40.58 3.01
4122 4384 8.345724 AGTTGATATTATGGAGAATGGATTGC 57.654 34.615 0.00 0.00 0.00 3.56
4432 4694 8.624776 GGAAAGCTCTAAATATTGCACAGTAAT 58.375 33.333 0.00 0.00 0.00 1.89
4433 4695 9.443283 GAAAGCTCTAAATATTGCACAGTAATG 57.557 33.333 0.00 0.00 0.00 1.90
4452 4714 6.894103 AGTAATGGCTCTTTTTCTGATCCAAT 59.106 34.615 0.00 0.00 34.07 3.16
4453 4715 5.593679 ATGGCTCTTTTTCTGATCCAATG 57.406 39.130 0.00 0.00 34.07 2.82
4735 4999 2.898729 ACGGTCCATGATTCAGCTAG 57.101 50.000 0.00 0.00 0.00 3.42
4741 5005 2.773661 TCCATGATTCAGCTAGAAGGCA 59.226 45.455 0.00 0.00 40.15 4.75
4773 5037 1.065031 CAATCTTCGCAAAACCGCCG 61.065 55.000 0.00 0.00 0.00 6.46
4822 5116 7.108841 ACTCCTATGTAGATTTGAAGCGTTA 57.891 36.000 0.00 0.00 0.00 3.18
4837 5131 7.350744 TGAAGCGTTATAAGGTGGTATTCTA 57.649 36.000 7.00 0.00 0.00 2.10
4838 5132 7.784037 TGAAGCGTTATAAGGTGGTATTCTAA 58.216 34.615 7.00 0.00 0.00 2.10
4897 5191 7.363268 GGTGTAAGGCATCATCAATTCTTCTTT 60.363 37.037 0.00 0.00 0.00 2.52
4901 5195 7.419711 AGGCATCATCAATTCTTCTTTCATT 57.580 32.000 0.00 0.00 0.00 2.57
4902 5196 7.265673 AGGCATCATCAATTCTTCTTTCATTG 58.734 34.615 0.00 0.00 0.00 2.82
4996 5290 8.670521 ATTTTCAGGTTAGAATCAAATTCCCT 57.329 30.769 0.00 0.00 40.13 4.20
4998 5292 8.491045 TTTCAGGTTAGAATCAAATTCCCTTT 57.509 30.769 0.00 0.00 40.13 3.11
5000 5294 9.594936 TTCAGGTTAGAATCAAATTCCCTTTTA 57.405 29.630 0.00 0.00 40.13 1.52
5001 5295 9.243105 TCAGGTTAGAATCAAATTCCCTTTTAG 57.757 33.333 0.00 0.00 40.13 1.85
5003 5297 7.124298 AGGTTAGAATCAAATTCCCTTTTAGGC 59.876 37.037 0.00 0.00 40.13 3.93
5025 5319 2.255316 AGGTTTGCGAAAAACAACACG 58.745 42.857 6.70 0.00 32.04 4.49
5040 5334 1.675552 ACACGAAGGGTTTTGTCCAG 58.324 50.000 0.00 0.00 0.00 3.86
5096 5402 3.004315 AGCGGACAAAATCGACATTGTTT 59.996 39.130 16.20 0.00 39.73 2.83
5125 5431 1.146263 CACCTACGGATGCCCCTTC 59.854 63.158 0.00 0.00 0.00 3.46
5127 5433 0.620700 ACCTACGGATGCCCCTTCTT 60.621 55.000 0.00 0.00 0.00 2.52
5140 5446 3.502595 GCCCCTTCTTGTTGAGTTCTTAC 59.497 47.826 0.00 0.00 0.00 2.34
5153 5459 4.337274 TGAGTTCTTACGATCGCCTATTCA 59.663 41.667 16.60 8.01 0.00 2.57
5160 5466 1.269102 CGATCGCCTATTCACCTTCGT 60.269 52.381 0.26 0.00 0.00 3.85
5166 5472 2.872858 GCCTATTCACCTTCGTGGATTC 59.127 50.000 4.38 0.00 39.14 2.52
5167 5473 3.432326 GCCTATTCACCTTCGTGGATTCT 60.432 47.826 4.38 0.00 39.14 2.40
5196 5502 0.829990 CTTCTTCTCTCCCTGGCCTC 59.170 60.000 3.32 0.00 0.00 4.70
5200 5506 0.710588 TTCTCTCCCTGGCCTCAGTA 59.289 55.000 3.32 0.00 39.31 2.74
5234 5540 1.974957 TGTGCCGTATATACCATGGCT 59.025 47.619 22.87 1.51 45.90 4.75
5236 5542 3.056393 TGTGCCGTATATACCATGGCTAC 60.056 47.826 22.87 19.41 45.90 3.58
5255 5574 1.533469 CGTCCGAAACTGACCCTCCT 61.533 60.000 0.00 0.00 0.00 3.69
5264 5583 4.716977 GACCCTCCTGACCCCCGT 62.717 72.222 0.00 0.00 0.00 5.28
5322 5765 3.737172 GATGCGCGGTGGTTGCTT 61.737 61.111 8.83 0.00 0.00 3.91
5391 5834 2.015227 AAGGCAACCGTTGTGCTTGG 62.015 55.000 12.77 0.00 37.17 3.61
5444 5887 2.934887 CACATGGTGGATCTTGCCATA 58.065 47.619 13.16 0.00 40.68 2.74
5446 5889 1.884579 CATGGTGGATCTTGCCATAGC 59.115 52.381 13.16 0.00 40.68 2.97
5453 5896 2.301296 GGATCTTGCCATAGCTGCTCTA 59.699 50.000 4.91 0.00 40.80 2.43
5460 5903 1.242989 CATAGCTGCTCTAGGCTCGA 58.757 55.000 4.91 0.00 42.39 4.04
5482 5925 2.267192 GGGTTTGGACCTAGGTTCTCT 58.733 52.381 21.31 0.00 45.75 3.10
5509 5952 3.110178 CGACGTCCTTCCCGTTGC 61.110 66.667 10.58 0.00 38.92 4.17
5510 5953 2.029964 GACGTCCTTCCCGTTGCA 59.970 61.111 3.51 0.00 38.92 4.08
5511 5954 2.027625 GACGTCCTTCCCGTTGCAG 61.028 63.158 3.51 0.00 38.92 4.41
5512 5955 3.423154 CGTCCTTCCCGTTGCAGC 61.423 66.667 0.00 0.00 0.00 5.25
5514 5957 2.035442 GTCCTTCCCGTTGCAGCTC 61.035 63.158 0.00 0.00 0.00 4.09
5515 5958 2.747855 CCTTCCCGTTGCAGCTCC 60.748 66.667 0.00 0.00 0.00 4.70
5539 5982 2.771943 CCCTGGTGTTCTGGAAGCTATA 59.228 50.000 0.00 0.00 36.68 1.31
5548 5991 2.698797 TCTGGAAGCTATACCCTTTCCG 59.301 50.000 0.00 0.00 0.00 4.30
5567 6010 2.968206 CTTCCTTGGCTTGCTGGC 59.032 61.111 0.00 0.00 42.18 4.85
5582 6025 3.880846 GGCATCTTGGCGGCTTCG 61.881 66.667 11.43 0.00 31.79 3.79
5605 6048 4.040217 GGCATCATCAGTCCAGATCTTAGT 59.960 45.833 0.00 0.00 0.00 2.24
5611 6054 6.211384 TCATCAGTCCAGATCTTAGTTTGTCA 59.789 38.462 0.00 0.00 0.00 3.58
5624 6067 2.129607 GTTTGTCAATGTTGCCAGCTG 58.870 47.619 6.78 6.78 0.00 4.24
5627 6070 0.953727 GTCAATGTTGCCAGCTGTCA 59.046 50.000 13.81 2.11 0.00 3.58
5632 6075 0.534877 TGTTGCCAGCTGTCATCGTT 60.535 50.000 13.81 0.00 0.00 3.85
5637 6080 0.994995 CCAGCTGTCATCGTTTCTCG 59.005 55.000 13.81 0.00 41.41 4.04
5653 6096 2.447443 TCTCGTGTGTTGGCTCTCTAT 58.553 47.619 0.00 0.00 0.00 1.98
5658 6101 2.093764 GTGTGTTGGCTCTCTATGCTCT 60.094 50.000 0.00 0.00 0.00 4.09
5666 6109 2.458951 CTCTCTATGCTCTGTTGTCGC 58.541 52.381 0.00 0.00 0.00 5.19
5691 6134 0.033503 CAACCCTAACCATCACCCCC 60.034 60.000 0.00 0.00 0.00 5.40
5693 6136 0.726366 ACCCTAACCATCACCCCCTA 59.274 55.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.892130 ATAAGGACCAAATAATCCGAATAGATC 57.108 33.333 0.00 0.00 40.20 2.75
2 3 8.876181 TGATAAGGACCAAATAATCCGAATAGA 58.124 33.333 0.00 0.00 40.20 1.98
3 4 9.672673 ATGATAAGGACCAAATAATCCGAATAG 57.327 33.333 0.00 0.00 40.20 1.73
5 6 9.672673 CTATGATAAGGACCAAATAATCCGAAT 57.327 33.333 0.00 0.00 40.20 3.34
6 7 8.100791 CCTATGATAAGGACCAAATAATCCGAA 58.899 37.037 0.00 0.00 40.20 4.30
8 9 6.316390 GCCTATGATAAGGACCAAATAATCCG 59.684 42.308 0.00 0.00 40.20 4.18
13 14 9.784376 AGTATAGCCTATGATAAGGACCAAATA 57.216 33.333 0.00 0.00 39.15 1.40
14 15 8.686739 AGTATAGCCTATGATAAGGACCAAAT 57.313 34.615 0.00 0.00 39.15 2.32
15 16 7.180408 GGAGTATAGCCTATGATAAGGACCAAA 59.820 40.741 0.00 0.00 39.15 3.28
16 17 6.668283 GGAGTATAGCCTATGATAAGGACCAA 59.332 42.308 0.00 0.00 39.15 3.67
17 18 6.195700 GGAGTATAGCCTATGATAAGGACCA 58.804 44.000 0.00 0.00 39.15 4.02
18 19 5.299782 CGGAGTATAGCCTATGATAAGGACC 59.700 48.000 0.00 0.00 39.15 4.46
19 20 5.299782 CCGGAGTATAGCCTATGATAAGGAC 59.700 48.000 0.00 0.00 39.15 3.85
20 21 5.044328 ACCGGAGTATAGCCTATGATAAGGA 60.044 44.000 9.46 0.00 39.15 3.36
21 22 5.067936 CACCGGAGTATAGCCTATGATAAGG 59.932 48.000 9.46 0.00 39.87 2.69
22 23 5.652891 ACACCGGAGTATAGCCTATGATAAG 59.347 44.000 9.46 0.00 0.00 1.73
23 24 5.577100 ACACCGGAGTATAGCCTATGATAA 58.423 41.667 9.46 0.00 0.00 1.75
24 25 5.045066 AGACACCGGAGTATAGCCTATGATA 60.045 44.000 9.46 0.00 0.00 2.15
25 26 4.017808 GACACCGGAGTATAGCCTATGAT 58.982 47.826 9.46 0.00 0.00 2.45
26 27 3.074094 AGACACCGGAGTATAGCCTATGA 59.926 47.826 9.46 0.00 0.00 2.15
27 28 3.422796 AGACACCGGAGTATAGCCTATG 58.577 50.000 9.46 0.00 0.00 2.23
28 29 3.810721 AGACACCGGAGTATAGCCTAT 57.189 47.619 9.46 0.00 0.00 2.57
29 30 3.589951 AAGACACCGGAGTATAGCCTA 57.410 47.619 9.46 0.00 0.00 3.93
30 31 2.456073 AAGACACCGGAGTATAGCCT 57.544 50.000 9.46 0.00 0.00 4.58
31 32 3.195661 CAAAAGACACCGGAGTATAGCC 58.804 50.000 9.46 0.00 0.00 3.93
32 33 3.858247 ACAAAAGACACCGGAGTATAGC 58.142 45.455 9.46 0.00 0.00 2.97
33 34 5.347907 GTGAACAAAAGACACCGGAGTATAG 59.652 44.000 9.46 0.00 0.00 1.31
34 35 5.011329 AGTGAACAAAAGACACCGGAGTATA 59.989 40.000 9.46 0.00 35.47 1.47
35 36 4.062991 GTGAACAAAAGACACCGGAGTAT 58.937 43.478 9.46 0.00 0.00 2.12
36 37 3.133362 AGTGAACAAAAGACACCGGAGTA 59.867 43.478 9.46 0.00 35.47 2.59
37 38 2.093128 AGTGAACAAAAGACACCGGAGT 60.093 45.455 9.46 6.23 35.47 3.85
38 39 2.287915 CAGTGAACAAAAGACACCGGAG 59.712 50.000 9.46 1.26 35.47 4.63
39 40 2.285083 CAGTGAACAAAAGACACCGGA 58.715 47.619 9.46 0.00 35.47 5.14
40 41 1.268539 GCAGTGAACAAAAGACACCGG 60.269 52.381 0.00 0.00 35.47 5.28
41 42 1.268539 GGCAGTGAACAAAAGACACCG 60.269 52.381 0.00 0.00 35.47 4.94
42 43 1.067060 GGGCAGTGAACAAAAGACACC 59.933 52.381 0.00 0.00 35.47 4.16
43 44 2.024414 AGGGCAGTGAACAAAAGACAC 58.976 47.619 0.00 0.00 35.15 3.67
44 45 2.435372 AGGGCAGTGAACAAAAGACA 57.565 45.000 0.00 0.00 0.00 3.41
45 46 2.814336 CCTAGGGCAGTGAACAAAAGAC 59.186 50.000 0.00 0.00 0.00 3.01
46 47 2.224769 CCCTAGGGCAGTGAACAAAAGA 60.225 50.000 16.90 0.00 0.00 2.52
47 48 2.162681 CCCTAGGGCAGTGAACAAAAG 58.837 52.381 16.90 0.00 0.00 2.27
48 49 1.777878 TCCCTAGGGCAGTGAACAAAA 59.222 47.619 24.42 0.00 34.68 2.44
49 50 1.351017 CTCCCTAGGGCAGTGAACAAA 59.649 52.381 24.42 0.11 34.68 2.83
50 51 0.984230 CTCCCTAGGGCAGTGAACAA 59.016 55.000 24.42 0.93 34.68 2.83
51 52 0.909610 CCTCCCTAGGGCAGTGAACA 60.910 60.000 24.42 1.74 39.48 3.18
52 53 1.908483 CCTCCCTAGGGCAGTGAAC 59.092 63.158 24.42 0.00 39.48 3.18
53 54 4.480480 CCTCCCTAGGGCAGTGAA 57.520 61.111 24.42 3.40 39.48 3.18
62 63 4.345854 AGTGACAGAGTTTACCTCCCTAG 58.654 47.826 0.00 0.00 41.47 3.02
63 64 4.399483 AGTGACAGAGTTTACCTCCCTA 57.601 45.455 0.00 0.00 41.47 3.53
64 65 3.261818 AGTGACAGAGTTTACCTCCCT 57.738 47.619 0.00 0.00 41.47 4.20
65 66 5.046520 ACATTAGTGACAGAGTTTACCTCCC 60.047 44.000 0.00 0.00 41.47 4.30
66 67 6.038997 ACATTAGTGACAGAGTTTACCTCC 57.961 41.667 0.00 0.00 41.47 4.30
67 68 7.964604 AAACATTAGTGACAGAGTTTACCTC 57.035 36.000 0.00 0.00 40.80 3.85
68 69 9.490379 CTAAAACATTAGTGACAGAGTTTACCT 57.510 33.333 0.00 0.00 0.00 3.08
69 70 8.228464 GCTAAAACATTAGTGACAGAGTTTACC 58.772 37.037 0.00 0.00 0.00 2.85
70 71 8.989980 AGCTAAAACATTAGTGACAGAGTTTAC 58.010 33.333 0.00 0.00 0.00 2.01
72 73 9.209175 CTAGCTAAAACATTAGTGACAGAGTTT 57.791 33.333 0.00 0.00 0.00 2.66
73 74 7.819900 CCTAGCTAAAACATTAGTGACAGAGTT 59.180 37.037 0.00 0.00 0.00 3.01
74 75 7.324178 CCTAGCTAAAACATTAGTGACAGAGT 58.676 38.462 0.00 0.00 0.00 3.24
75 76 6.256757 GCCTAGCTAAAACATTAGTGACAGAG 59.743 42.308 0.00 0.00 0.00 3.35
76 77 6.070767 AGCCTAGCTAAAACATTAGTGACAGA 60.071 38.462 0.00 0.00 36.99 3.41
77 78 6.109359 AGCCTAGCTAAAACATTAGTGACAG 58.891 40.000 0.00 0.00 36.99 3.51
78 79 6.049955 AGCCTAGCTAAAACATTAGTGACA 57.950 37.500 0.00 0.00 36.99 3.58
79 80 7.701809 CTAGCCTAGCTAAAACATTAGTGAC 57.298 40.000 0.00 0.00 40.82 3.67
95 96 1.173444 ATCCGACACCGCTAGCCTAG 61.173 60.000 9.66 0.38 0.00 3.02
96 97 1.152819 ATCCGACACCGCTAGCCTA 60.153 57.895 9.66 0.00 0.00 3.93
97 98 2.442272 ATCCGACACCGCTAGCCT 60.442 61.111 9.66 0.00 0.00 4.58
98 99 2.027751 GATCCGACACCGCTAGCC 59.972 66.667 9.66 0.00 0.00 3.93
99 100 2.027751 GGATCCGACACCGCTAGC 59.972 66.667 4.06 4.06 0.00 3.42
100 101 1.065928 GTGGATCCGACACCGCTAG 59.934 63.158 7.39 0.00 34.33 3.42
101 102 3.203442 GTGGATCCGACACCGCTA 58.797 61.111 7.39 0.00 34.33 4.26
106 107 1.221021 GGGAAGGTGGATCCGACAC 59.779 63.158 7.39 0.00 41.99 3.67
107 108 1.080354 AGGGAAGGTGGATCCGACA 59.920 57.895 7.39 0.00 41.99 4.35
108 109 1.265454 ACAGGGAAGGTGGATCCGAC 61.265 60.000 7.39 6.53 41.99 4.79
109 110 1.080354 ACAGGGAAGGTGGATCCGA 59.920 57.895 7.39 0.00 41.99 4.55
110 111 1.221840 CACAGGGAAGGTGGATCCG 59.778 63.158 7.39 0.00 41.99 4.18
123 124 0.962356 GTGGCTCATCAACCCACAGG 60.962 60.000 4.29 0.00 46.38 4.00
124 125 2.559785 GTGGCTCATCAACCCACAG 58.440 57.895 4.29 0.00 46.38 3.66
125 126 4.819783 GTGGCTCATCAACCCACA 57.180 55.556 4.29 0.00 46.38 4.17
126 127 2.040544 CGGTGGCTCATCAACCCAC 61.041 63.158 0.54 0.54 46.40 4.61
127 128 2.350895 CGGTGGCTCATCAACCCA 59.649 61.111 0.00 0.00 0.00 4.51
128 129 2.438434 CCGGTGGCTCATCAACCC 60.438 66.667 0.00 0.00 0.00 4.11
129 130 3.134127 GCCGGTGGCTCATCAACC 61.134 66.667 1.90 0.00 46.69 3.77
139 140 3.584834 CCTTCAAAATAAAAGCCGGTGG 58.415 45.455 1.90 0.00 0.00 4.61
140 141 3.006430 ACCCTTCAAAATAAAAGCCGGTG 59.994 43.478 1.90 0.00 0.00 4.94
141 142 3.236047 ACCCTTCAAAATAAAAGCCGGT 58.764 40.909 1.90 0.00 0.00 5.28
142 143 3.953712 ACCCTTCAAAATAAAAGCCGG 57.046 42.857 0.00 0.00 0.00 6.13
143 144 4.450757 CCAAACCCTTCAAAATAAAAGCCG 59.549 41.667 0.00 0.00 0.00 5.52
144 145 5.238432 CACCAAACCCTTCAAAATAAAAGCC 59.762 40.000 0.00 0.00 0.00 4.35
145 146 5.238432 CCACCAAACCCTTCAAAATAAAAGC 59.762 40.000 0.00 0.00 0.00 3.51
146 147 6.481976 GTCCACCAAACCCTTCAAAATAAAAG 59.518 38.462 0.00 0.00 0.00 2.27
147 148 6.350103 GTCCACCAAACCCTTCAAAATAAAA 58.650 36.000 0.00 0.00 0.00 1.52
148 149 5.452077 CGTCCACCAAACCCTTCAAAATAAA 60.452 40.000 0.00 0.00 0.00 1.40
149 150 4.038162 CGTCCACCAAACCCTTCAAAATAA 59.962 41.667 0.00 0.00 0.00 1.40
150 151 3.570550 CGTCCACCAAACCCTTCAAAATA 59.429 43.478 0.00 0.00 0.00 1.40
151 152 2.364002 CGTCCACCAAACCCTTCAAAAT 59.636 45.455 0.00 0.00 0.00 1.82
152 153 1.751924 CGTCCACCAAACCCTTCAAAA 59.248 47.619 0.00 0.00 0.00 2.44
153 154 1.064611 TCGTCCACCAAACCCTTCAAA 60.065 47.619 0.00 0.00 0.00 2.69
154 155 0.547075 TCGTCCACCAAACCCTTCAA 59.453 50.000 0.00 0.00 0.00 2.69
155 156 0.768622 ATCGTCCACCAAACCCTTCA 59.231 50.000 0.00 0.00 0.00 3.02
156 157 1.165270 CATCGTCCACCAAACCCTTC 58.835 55.000 0.00 0.00 0.00 3.46
157 158 0.476771 ACATCGTCCACCAAACCCTT 59.523 50.000 0.00 0.00 0.00 3.95
158 159 1.354101 TACATCGTCCACCAAACCCT 58.646 50.000 0.00 0.00 0.00 4.34
159 160 1.808343 GTTACATCGTCCACCAAACCC 59.192 52.381 0.00 0.00 0.00 4.11
160 161 2.224784 GTGTTACATCGTCCACCAAACC 59.775 50.000 0.00 0.00 0.00 3.27
161 162 3.135994 AGTGTTACATCGTCCACCAAAC 58.864 45.455 0.00 0.00 0.00 2.93
162 163 3.478857 AGTGTTACATCGTCCACCAAA 57.521 42.857 0.00 0.00 0.00 3.28
163 164 3.070446 AGAAGTGTTACATCGTCCACCAA 59.930 43.478 0.00 0.00 0.00 3.67
164 165 2.631062 AGAAGTGTTACATCGTCCACCA 59.369 45.455 0.00 0.00 0.00 4.17
165 166 3.314541 AGAAGTGTTACATCGTCCACC 57.685 47.619 0.00 0.00 0.00 4.61
166 167 4.748102 TCAAAGAAGTGTTACATCGTCCAC 59.252 41.667 0.00 0.00 0.00 4.02
167 168 4.951254 TCAAAGAAGTGTTACATCGTCCA 58.049 39.130 0.00 0.00 0.00 4.02
168 169 6.147164 TGAATCAAAGAAGTGTTACATCGTCC 59.853 38.462 0.00 0.00 0.00 4.79
169 170 7.117241 TGAATCAAAGAAGTGTTACATCGTC 57.883 36.000 0.00 0.00 0.00 4.20
170 171 7.490962 TTGAATCAAAGAAGTGTTACATCGT 57.509 32.000 0.00 0.00 0.00 3.73
177 178 9.822185 AAGCTTTTATTGAATCAAAGAAGTGTT 57.178 25.926 14.21 1.46 30.31 3.32
178 179 9.468532 GAAGCTTTTATTGAATCAAAGAAGTGT 57.531 29.630 14.21 0.00 30.31 3.55
179 180 8.919661 GGAAGCTTTTATTGAATCAAAGAAGTG 58.080 33.333 14.21 0.00 30.31 3.16
180 181 7.809806 CGGAAGCTTTTATTGAATCAAAGAAGT 59.190 33.333 14.21 0.64 30.31 3.01
181 182 8.023128 TCGGAAGCTTTTATTGAATCAAAGAAG 58.977 33.333 14.21 5.97 30.31 2.85
182 183 7.881142 TCGGAAGCTTTTATTGAATCAAAGAA 58.119 30.769 14.21 0.00 30.31 2.52
183 184 7.447374 TCGGAAGCTTTTATTGAATCAAAGA 57.553 32.000 14.21 0.00 30.31 2.52
184 185 7.809806 ACTTCGGAAGCTTTTATTGAATCAAAG 59.190 33.333 17.37 7.33 0.00 2.77
185 186 7.657336 ACTTCGGAAGCTTTTATTGAATCAAA 58.343 30.769 17.37 0.00 0.00 2.69
186 187 7.214467 ACTTCGGAAGCTTTTATTGAATCAA 57.786 32.000 17.37 0.00 0.00 2.57
187 188 6.817765 ACTTCGGAAGCTTTTATTGAATCA 57.182 33.333 17.37 0.00 0.00 2.57
188 189 7.807907 TGAAACTTCGGAAGCTTTTATTGAATC 59.192 33.333 17.37 4.62 0.00 2.52
189 190 7.657336 TGAAACTTCGGAAGCTTTTATTGAAT 58.343 30.769 17.37 0.00 0.00 2.57
190 191 7.033530 TGAAACTTCGGAAGCTTTTATTGAA 57.966 32.000 17.37 0.33 0.00 2.69
191 192 6.627395 TGAAACTTCGGAAGCTTTTATTGA 57.373 33.333 17.37 0.00 0.00 2.57
192 193 7.692908 TTTGAAACTTCGGAAGCTTTTATTG 57.307 32.000 17.37 0.00 0.00 1.90
193 194 8.710835 TTTTTGAAACTTCGGAAGCTTTTATT 57.289 26.923 17.37 0.69 0.00 1.40
250 251 4.584029 ATCAGCGTCAACTACAATTTCG 57.416 40.909 0.00 0.00 0.00 3.46
251 252 6.019479 CCTCTATCAGCGTCAACTACAATTTC 60.019 42.308 0.00 0.00 0.00 2.17
257 258 2.034812 CCCCTCTATCAGCGTCAACTAC 59.965 54.545 0.00 0.00 0.00 2.73
258 259 2.307768 CCCCTCTATCAGCGTCAACTA 58.692 52.381 0.00 0.00 0.00 2.24
271 272 4.039973 CGCAAGACATTAATACCCCCTCTA 59.960 45.833 0.00 0.00 43.02 2.43
317 318 7.725251 TCCTCAAAAGAAAAACTGCAATACAT 58.275 30.769 0.00 0.00 0.00 2.29
357 358 1.215655 GCCGCATTACGCCTACTCAG 61.216 60.000 0.00 0.00 41.76 3.35
372 373 2.097541 GTGATCGAAAACGTATAGCCGC 60.098 50.000 0.00 0.00 0.00 6.53
389 390 0.103208 GCTGTACGCCTGCTAGTGAT 59.897 55.000 0.00 0.00 35.32 3.06
411 412 2.509336 GTGGGAGATGGACGCGTG 60.509 66.667 20.70 0.00 0.00 5.34
727 729 4.960866 TGCTGCTGCTGGTGGTGG 62.961 66.667 17.00 0.00 40.48 4.61
777 788 0.765510 GGAACTAGGGCATACCAGGG 59.234 60.000 0.00 0.00 43.89 4.45
996 1007 4.080356 TGAGCCAGCAGTAATACCATTTCT 60.080 41.667 0.00 0.00 0.00 2.52
997 1008 4.199310 TGAGCCAGCAGTAATACCATTTC 58.801 43.478 0.00 0.00 0.00 2.17
1219 1231 1.970917 GCACGATGCTTCCTTCCACG 61.971 60.000 0.00 0.00 40.96 4.94
1437 1449 2.851195 ACACTAACCTGGTTCTTGCAG 58.149 47.619 16.75 9.97 0.00 4.41
1474 1486 5.137551 ACCACCAATATGGCAATACCTAAC 58.862 41.667 0.00 0.00 44.33 2.34
1496 1508 3.630312 ACCAAACAATCACACAGTGGTAC 59.370 43.478 5.31 0.00 36.15 3.34
1553 1565 0.615331 CCTTCTTGCCAGTAGCTCCA 59.385 55.000 0.00 0.00 44.23 3.86
1666 1720 4.800023 TCGGAGTGATATAGAACCTCCAA 58.200 43.478 0.00 0.00 41.45 3.53
1667 1721 4.141228 ACTCGGAGTGATATAGAACCTCCA 60.141 45.833 10.41 0.00 41.45 3.86
1668 1722 4.400120 ACTCGGAGTGATATAGAACCTCC 58.600 47.826 10.41 0.00 38.65 4.30
1669 1723 5.531659 TGAACTCGGAGTGATATAGAACCTC 59.468 44.000 12.12 1.46 0.00 3.85
1670 1724 5.446860 TGAACTCGGAGTGATATAGAACCT 58.553 41.667 12.12 0.00 0.00 3.50
1671 1725 5.769484 TGAACTCGGAGTGATATAGAACC 57.231 43.478 12.12 0.00 0.00 3.62
1672 1726 7.382759 GGATTTGAACTCGGAGTGATATAGAAC 59.617 40.741 12.12 0.00 0.00 3.01
1673 1727 7.287927 AGGATTTGAACTCGGAGTGATATAGAA 59.712 37.037 12.12 1.30 0.00 2.10
1674 1728 6.778069 AGGATTTGAACTCGGAGTGATATAGA 59.222 38.462 12.12 0.00 0.00 1.98
1675 1729 6.865726 CAGGATTTGAACTCGGAGTGATATAG 59.134 42.308 12.12 0.00 0.00 1.31
1676 1730 6.738731 GCAGGATTTGAACTCGGAGTGATATA 60.739 42.308 12.12 0.00 0.00 0.86
1677 1731 5.605534 CAGGATTTGAACTCGGAGTGATAT 58.394 41.667 12.12 3.46 0.00 1.63
1678 1732 4.680708 GCAGGATTTGAACTCGGAGTGATA 60.681 45.833 12.12 0.00 0.00 2.15
1679 1733 3.866651 CAGGATTTGAACTCGGAGTGAT 58.133 45.455 12.12 4.06 0.00 3.06
1680 1734 2.612972 GCAGGATTTGAACTCGGAGTGA 60.613 50.000 12.12 0.00 0.00 3.41
1681 1735 1.734465 GCAGGATTTGAACTCGGAGTG 59.266 52.381 12.12 0.00 0.00 3.51
1682 1736 1.625818 AGCAGGATTTGAACTCGGAGT 59.374 47.619 4.45 4.45 0.00 3.85
1683 1737 2.393271 AGCAGGATTTGAACTCGGAG 57.607 50.000 2.83 2.83 0.00 4.63
1684 1738 2.093658 GGTAGCAGGATTTGAACTCGGA 60.094 50.000 0.00 0.00 0.00 4.55
1685 1739 2.280628 GGTAGCAGGATTTGAACTCGG 58.719 52.381 0.00 0.00 0.00 4.63
1686 1740 2.972625 TGGTAGCAGGATTTGAACTCG 58.027 47.619 0.00 0.00 0.00 4.18
1687 1741 5.904362 AATTGGTAGCAGGATTTGAACTC 57.096 39.130 0.00 0.00 0.00 3.01
1688 1742 8.903820 GTTATAATTGGTAGCAGGATTTGAACT 58.096 33.333 0.00 0.00 0.00 3.01
1689 1743 8.135529 GGTTATAATTGGTAGCAGGATTTGAAC 58.864 37.037 0.00 2.16 0.00 3.18
1690 1744 7.836685 TGGTTATAATTGGTAGCAGGATTTGAA 59.163 33.333 0.00 0.00 0.00 2.69
1691 1745 7.284489 GTGGTTATAATTGGTAGCAGGATTTGA 59.716 37.037 0.00 0.00 0.00 2.69
1692 1746 7.425606 GTGGTTATAATTGGTAGCAGGATTTG 58.574 38.462 0.00 0.00 0.00 2.32
1693 1747 6.262273 CGTGGTTATAATTGGTAGCAGGATTT 59.738 38.462 0.00 0.00 0.00 2.17
1694 1748 5.763204 CGTGGTTATAATTGGTAGCAGGATT 59.237 40.000 0.00 0.00 0.00 3.01
1695 1749 5.071250 TCGTGGTTATAATTGGTAGCAGGAT 59.929 40.000 0.00 0.00 30.80 3.24
1696 1750 4.406326 TCGTGGTTATAATTGGTAGCAGGA 59.594 41.667 0.00 0.00 32.58 3.86
1697 1751 4.699637 TCGTGGTTATAATTGGTAGCAGG 58.300 43.478 0.00 0.00 0.00 4.85
1698 1752 6.671614 TTTCGTGGTTATAATTGGTAGCAG 57.328 37.500 0.00 0.00 0.00 4.24
1699 1753 7.633193 AATTTCGTGGTTATAATTGGTAGCA 57.367 32.000 0.00 0.00 0.00 3.49
1845 1899 6.999950 TCTAGCACAATTTACCACTAGTTCA 58.000 36.000 0.00 0.00 0.00 3.18
2050 2104 6.583806 GGATGTGAGCAGAACAAACATAAAAG 59.416 38.462 0.00 0.00 31.82 2.27
2487 2542 5.881447 TGCACGTACAATAACAAACTGTTT 58.119 33.333 0.00 0.00 41.45 2.83
2773 2829 4.638421 TGTCAAACCCTACTGTCAAAACTG 59.362 41.667 0.00 0.00 0.00 3.16
2805 2861 4.104102 TGGATGGTCAGAAAGGTAACAGTT 59.896 41.667 0.00 0.00 41.41 3.16
2813 2869 5.420104 AGCTTTAATTGGATGGTCAGAAAGG 59.580 40.000 0.00 0.00 0.00 3.11
3046 3106 2.511659 TGACTGGTTCGCTACACTACT 58.488 47.619 0.00 0.00 0.00 2.57
3140 3200 0.179189 GCACGCATTAGGCAAGTGTC 60.179 55.000 0.00 0.00 45.17 3.67
3155 3215 2.032054 ACATGACAGACAACAAAGCACG 59.968 45.455 0.00 0.00 0.00 5.34
3282 3342 5.390613 CATCGGTGTGTCAACTTTTATTCC 58.609 41.667 0.00 0.00 0.00 3.01
3347 3407 6.428083 TGTCCAGGTAAGTAAAATGACAGA 57.572 37.500 0.00 0.00 0.00 3.41
3350 3410 7.328493 GCAAATTGTCCAGGTAAGTAAAATGAC 59.672 37.037 0.00 0.00 0.00 3.06
3410 3470 7.551262 TCCAAGTAGCGAAAATTATCTAAGCAA 59.449 33.333 0.00 0.00 0.00 3.91
3465 3525 3.271225 TCTGGTGAGGTCTCTATTACCCA 59.729 47.826 0.00 0.00 37.77 4.51
3586 3846 6.068010 TCACTTATGGACAAGTTGATTTGGT 58.932 36.000 10.54 0.00 36.61 3.67
3613 3875 9.906660 ATATTTCAGCACTTCGAACAATAAAAA 57.093 25.926 0.00 0.00 0.00 1.94
3884 4146 4.332543 GGAATGCTTGTATGTTCGTCATCA 59.667 41.667 0.00 0.00 37.91 3.07
4122 4384 4.761739 AGAATATTGTGTGCCATATTCGGG 59.238 41.667 0.00 0.00 39.60 5.14
4133 4395 5.412286 TGTGGTGTCATCAGAATATTGTGTG 59.588 40.000 11.96 9.74 0.00 3.82
4134 4396 5.412594 GTGTGGTGTCATCAGAATATTGTGT 59.587 40.000 11.96 0.00 0.00 3.72
4375 4637 2.176889 TCAGGACTAGTGGGTTACTGC 58.823 52.381 0.00 0.00 40.65 4.40
4433 4695 4.437930 CGACATTGGATCAGAAAAAGAGCC 60.438 45.833 0.00 0.00 41.82 4.70
4452 4714 1.873903 GCTTCTTCACTTCCTGCGACA 60.874 52.381 0.00 0.00 0.00 4.35
4453 4715 0.793250 GCTTCTTCACTTCCTGCGAC 59.207 55.000 0.00 0.00 0.00 5.19
4735 4999 2.966309 CTTGCGAACCCGTGCCTTC 61.966 63.158 0.00 0.00 38.24 3.46
4741 5005 0.889186 AAGATTGCTTGCGAACCCGT 60.889 50.000 0.00 0.00 38.24 5.28
4773 5037 9.752961 GTATCTTCTATGGAGTTTCTAAGAACC 57.247 37.037 0.00 0.00 0.00 3.62
4837 5131 4.766891 CAGACTATGGGATGTGTTTTGGTT 59.233 41.667 0.00 0.00 0.00 3.67
4838 5132 4.042809 TCAGACTATGGGATGTGTTTTGGT 59.957 41.667 0.00 0.00 0.00 3.67
4843 5137 8.274322 TCAATTAATCAGACTATGGGATGTGTT 58.726 33.333 0.00 0.00 0.00 3.32
4897 5191 4.391830 GCAAACCAGACTCGAATACAATGA 59.608 41.667 0.00 0.00 0.00 2.57
4901 5195 3.678056 AGCAAACCAGACTCGAATACA 57.322 42.857 0.00 0.00 0.00 2.29
4902 5196 4.092091 CAGAAGCAAACCAGACTCGAATAC 59.908 45.833 0.00 0.00 0.00 1.89
5003 5297 3.481146 CGTGTTGTTTTTCGCAAACCTTG 60.481 43.478 7.37 0.00 0.00 3.61
5022 5316 1.873591 CTCTGGACAAAACCCTTCGTG 59.126 52.381 0.00 0.00 0.00 4.35
5025 5319 1.882623 CAGCTCTGGACAAAACCCTTC 59.117 52.381 0.00 0.00 0.00 3.46
5040 5334 0.173708 CTAACGACCCTGACCAGCTC 59.826 60.000 0.00 0.00 0.00 4.09
5083 5389 5.126067 CCCAGGATCTAAACAATGTCGATT 58.874 41.667 0.00 0.00 0.00 3.34
5096 5402 3.127099 CGTAGGTGCCCAGGATCTA 57.873 57.895 0.00 0.00 0.00 1.98
5118 5424 2.278332 AGAACTCAACAAGAAGGGGC 57.722 50.000 0.00 0.00 0.00 5.80
5140 5446 1.269102 ACGAAGGTGAATAGGCGATCG 60.269 52.381 11.69 11.69 35.36 3.69
5153 5459 1.893801 AGACGAAGAATCCACGAAGGT 59.106 47.619 0.00 0.00 39.02 3.50
5160 5466 2.828520 AGAAGAGCAGACGAAGAATCCA 59.171 45.455 0.00 0.00 0.00 3.41
5166 5472 3.427503 GGAGAGAAGAAGAGCAGACGAAG 60.428 52.174 0.00 0.00 0.00 3.79
5167 5473 2.490115 GGAGAGAAGAAGAGCAGACGAA 59.510 50.000 0.00 0.00 0.00 3.85
5196 5502 4.184629 GCACAAGTAGACCTCCATTACTG 58.815 47.826 0.00 0.00 0.00 2.74
5200 5506 1.066143 CGGCACAAGTAGACCTCCATT 60.066 52.381 0.00 0.00 0.00 3.16
5234 5540 0.883833 GAGGGTCAGTTTCGGACGTA 59.116 55.000 0.00 0.00 36.12 3.57
5236 5542 1.080025 GGAGGGTCAGTTTCGGACG 60.080 63.158 0.00 0.00 36.12 4.79
5322 5765 1.678728 GCCTATAGCACCAGCACACAA 60.679 52.381 0.00 0.00 45.49 3.33
5370 5813 2.627510 AAGCACAACGGTTGCCTTGC 62.628 55.000 20.20 20.55 32.95 4.01
5371 5814 0.871163 CAAGCACAACGGTTGCCTTG 60.871 55.000 26.26 26.26 45.41 3.61
5372 5815 1.437160 CAAGCACAACGGTTGCCTT 59.563 52.632 20.20 18.21 45.41 4.35
5373 5816 3.119193 CAAGCACAACGGTTGCCT 58.881 55.556 20.20 13.68 45.41 4.75
5391 5834 4.814294 CTAGACCCGCGCCACCAC 62.814 72.222 0.00 0.00 0.00 4.16
5403 5846 1.684734 TCGCCAAGGACCCCTAGAC 60.685 63.158 0.00 0.00 31.13 2.59
5453 5896 2.920912 TCCAAACCCGTCGAGCCT 60.921 61.111 0.00 0.00 0.00 4.58
5482 5925 1.203052 GAAGGACGTCGACAACCCATA 59.797 52.381 17.16 0.00 0.00 2.74
5509 5952 2.788191 GAACACCAGGGTCGGAGCTG 62.788 65.000 7.19 3.78 0.00 4.24
5510 5953 2.526873 AACACCAGGGTCGGAGCT 60.527 61.111 7.19 0.00 0.00 4.09
5511 5954 2.047179 GAACACCAGGGTCGGAGC 60.047 66.667 0.00 0.00 0.00 4.70
5512 5955 1.293498 CAGAACACCAGGGTCGGAG 59.707 63.158 0.00 0.00 0.00 4.63
5514 5957 1.764571 TTCCAGAACACCAGGGTCGG 61.765 60.000 0.00 0.00 0.00 4.79
5515 5958 0.320771 CTTCCAGAACACCAGGGTCG 60.321 60.000 0.00 0.00 0.00 4.79
5548 5991 2.643232 CCAGCAAGCCAAGGAAGCC 61.643 63.158 0.00 0.00 0.00 4.35
5567 6010 3.880846 GCCGAAGCCGCCAAGATG 61.881 66.667 0.00 0.00 0.00 2.90
5576 6019 1.162800 GGACTGATGATGCCGAAGCC 61.163 60.000 0.00 0.00 38.69 4.35
5582 6025 3.488778 AAGATCTGGACTGATGATGCC 57.511 47.619 0.00 0.00 0.00 4.40
5588 6031 6.611613 TGACAAACTAAGATCTGGACTGAT 57.388 37.500 0.00 0.00 0.00 2.90
5624 6067 2.096909 CCAACACACGAGAAACGATGAC 60.097 50.000 0.00 0.00 45.77 3.06
5627 6070 0.865769 GCCAACACACGAGAAACGAT 59.134 50.000 0.00 0.00 45.77 3.73
5632 6075 1.040646 AGAGAGCCAACACACGAGAA 58.959 50.000 0.00 0.00 0.00 2.87
5637 6080 2.093764 AGAGCATAGAGAGCCAACACAC 60.094 50.000 0.00 0.00 0.00 3.82
5653 6096 1.290324 GAGAGGCGACAACAGAGCA 59.710 57.895 0.00 0.00 0.00 4.26
5658 6101 1.070786 GGTTGGAGAGGCGACAACA 59.929 57.895 14.83 0.00 44.61 3.33
5666 6109 2.092914 GTGATGGTTAGGGTTGGAGAGG 60.093 54.545 0.00 0.00 0.00 3.69
5691 6134 2.907917 CGGAGGAGGGCGAGGTAG 60.908 72.222 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.