Multiple sequence alignment - TraesCS2A01G301000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G301000 chr2A 100.000 3237 0 0 1 3237 516309911 516306675 0.000000e+00 5978.0
1 TraesCS2A01G301000 chr2D 97.137 2026 37 8 452 2473 382129428 382127420 0.000000e+00 3400.0
2 TraesCS2A01G301000 chr2D 90.503 358 19 8 2879 3221 490798234 490798591 2.940000e-125 459.0
3 TraesCS2A01G301000 chr2D 95.522 201 7 2 3038 3237 382069411 382069212 1.450000e-83 320.0
4 TraesCS2A01G301000 chr2D 90.840 131 12 0 2879 3009 609554990 609555120 3.320000e-40 176.0
5 TraesCS2A01G301000 chr2D 96.875 32 1 0 2436 2467 11788739 11788708 2.000000e-03 54.7
6 TraesCS2A01G301000 chr2B 95.141 1873 49 12 452 2318 452913289 452911453 0.000000e+00 2916.0
7 TraesCS2A01G301000 chr2B 89.366 489 47 3 2530 3017 452910177 452909693 7.680000e-171 610.0
8 TraesCS2A01G301000 chr2B 94.500 200 11 0 3038 3237 452797479 452797280 3.140000e-80 309.0
9 TraesCS2A01G301000 chr2B 97.238 181 5 0 2293 2473 452911449 452911269 1.130000e-79 307.0
10 TraesCS2A01G301000 chr7D 92.493 373 13 8 2880 3237 563364812 563364440 1.330000e-143 520.0
11 TraesCS2A01G301000 chr7D 90.769 65 6 0 1210 1274 37234889 37234825 1.600000e-13 87.9
12 TraesCS2A01G301000 chr5B 90.909 374 19 1 2879 3237 611728724 611729097 3.750000e-134 488.0
13 TraesCS2A01G301000 chr6D 90.251 359 19 9 2879 3221 9012580 9012222 3.810000e-124 455.0
14 TraesCS2A01G301000 chr4D 89.218 371 11 9 2880 3235 223447589 223447233 1.380000e-118 436.0
15 TraesCS2A01G301000 chr7B 90.336 238 8 8 2904 3126 726100465 726100228 6.790000e-77 298.0
16 TraesCS2A01G301000 chr6B 93.299 194 13 0 3043 3236 712635557 712635364 1.470000e-73 287.0
17 TraesCS2A01G301000 chr6B 79.714 350 52 14 2540 2875 712636356 712636012 5.400000e-58 235.0
18 TraesCS2A01G301000 chr1B 93.023 129 9 0 3109 3237 231321570 231321698 4.260000e-44 189.0
19 TraesCS2A01G301000 chr1D 89.051 137 12 2 2874 3007 99647447 99647583 2.000000e-37 167.0
20 TraesCS2A01G301000 chr3D 90.789 76 7 0 2538 2613 581578736 581578811 5.710000e-18 102.0
21 TraesCS2A01G301000 chrUn 92.308 65 5 0 1210 1274 90726733 90726669 3.440000e-15 93.5
22 TraesCS2A01G301000 chrUn 92.308 65 5 0 1210 1274 90939278 90939214 3.440000e-15 93.5
23 TraesCS2A01G301000 chrUn 92.308 65 5 0 1210 1274 401026603 401026539 3.440000e-15 93.5
24 TraesCS2A01G301000 chr7A 92.308 65 5 0 1210 1274 36630004 36629940 3.440000e-15 93.5
25 TraesCS2A01G301000 chr4A 90.769 65 6 0 1210 1274 689137570 689137506 1.600000e-13 87.9
26 TraesCS2A01G301000 chr4A 90.769 65 6 0 1210 1274 689190418 689190354 1.600000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G301000 chr2A 516306675 516309911 3236 True 5978.000000 5978 100.0000 1 3237 1 chr2A.!!$R1 3236
1 TraesCS2A01G301000 chr2D 382127420 382129428 2008 True 3400.000000 3400 97.1370 452 2473 1 chr2D.!!$R3 2021
2 TraesCS2A01G301000 chr2B 452909693 452913289 3596 True 1277.666667 2916 93.9150 452 3017 3 chr2B.!!$R2 2565
3 TraesCS2A01G301000 chr6B 712635364 712636356 992 True 261.000000 287 86.5065 2540 3236 2 chr6B.!!$R1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 348 0.037303 CCTGACTGTCACAATGCCCT 59.963 55.0 6.36 0.0 0.00 5.19 F
432 433 0.249699 ATGTTGTCAGCGACCACGAA 60.250 50.0 6.30 0.0 42.66 3.85 F
433 434 0.249699 TGTTGTCAGCGACCACGAAT 60.250 50.0 6.30 0.0 42.66 3.34 F
809 811 0.390472 GGCTCCCTCAAACTCGTCAG 60.390 60.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 1781 1.199789 ACCACATGTTACTTGCATGCG 59.800 47.619 14.09 1.59 45.4 4.73 R
1804 1811 1.820519 GCTCCTGGATTGTTCATTGCA 59.179 47.619 0.00 0.00 0.0 4.08 R
2014 2021 3.704566 TGGCGAGGATGTTCTTGTAGTAT 59.295 43.478 0.00 0.00 0.0 2.12 R
2613 3685 1.145598 CCACATCTCATCTGCGCCT 59.854 57.895 4.18 0.00 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.668541 GTAGTTTGAGAGCTTGCATATGAA 57.331 37.500 6.97 0.00 0.00 2.57
24 25 7.076842 GTAGTTTGAGAGCTTGCATATGAAA 57.923 36.000 6.97 0.30 0.00 2.69
25 26 6.770746 AGTTTGAGAGCTTGCATATGAAAT 57.229 33.333 6.97 0.00 0.00 2.17
26 27 7.166691 AGTTTGAGAGCTTGCATATGAAATT 57.833 32.000 6.97 0.00 0.00 1.82
27 28 7.033791 AGTTTGAGAGCTTGCATATGAAATTG 58.966 34.615 6.97 0.00 0.00 2.32
28 29 6.519679 TTGAGAGCTTGCATATGAAATTGT 57.480 33.333 6.97 0.00 0.00 2.71
29 30 7.628769 TTGAGAGCTTGCATATGAAATTGTA 57.371 32.000 6.97 0.00 0.00 2.41
30 31 7.628769 TGAGAGCTTGCATATGAAATTGTAA 57.371 32.000 6.97 0.00 0.00 2.41
31 32 7.475015 TGAGAGCTTGCATATGAAATTGTAAC 58.525 34.615 6.97 0.00 0.00 2.50
32 33 7.337689 TGAGAGCTTGCATATGAAATTGTAACT 59.662 33.333 6.97 0.00 0.00 2.24
33 34 8.737168 AGAGCTTGCATATGAAATTGTAACTA 57.263 30.769 6.97 0.00 0.00 2.24
34 35 8.616076 AGAGCTTGCATATGAAATTGTAACTAC 58.384 33.333 6.97 0.00 0.00 2.73
35 36 7.707104 AGCTTGCATATGAAATTGTAACTACC 58.293 34.615 6.97 0.00 0.00 3.18
36 37 6.918022 GCTTGCATATGAAATTGTAACTACCC 59.082 38.462 6.97 0.00 0.00 3.69
37 38 7.416213 GCTTGCATATGAAATTGTAACTACCCA 60.416 37.037 6.97 0.00 0.00 4.51
38 39 7.328277 TGCATATGAAATTGTAACTACCCAC 57.672 36.000 6.97 0.00 0.00 4.61
39 40 6.887002 TGCATATGAAATTGTAACTACCCACA 59.113 34.615 6.97 0.00 0.00 4.17
40 41 7.559533 TGCATATGAAATTGTAACTACCCACAT 59.440 33.333 6.97 0.00 0.00 3.21
41 42 8.413229 GCATATGAAATTGTAACTACCCACATT 58.587 33.333 6.97 0.00 0.00 2.71
42 43 9.950680 CATATGAAATTGTAACTACCCACATTC 57.049 33.333 0.00 0.00 0.00 2.67
43 44 6.489127 TGAAATTGTAACTACCCACATTCG 57.511 37.500 0.00 0.00 0.00 3.34
44 45 5.998981 TGAAATTGTAACTACCCACATTCGT 59.001 36.000 0.00 0.00 0.00 3.85
45 46 6.487331 TGAAATTGTAACTACCCACATTCGTT 59.513 34.615 0.00 0.00 0.00 3.85
46 47 7.660617 TGAAATTGTAACTACCCACATTCGTTA 59.339 33.333 0.00 0.00 0.00 3.18
47 48 7.605410 AATTGTAACTACCCACATTCGTTAG 57.395 36.000 0.00 0.00 0.00 2.34
48 49 5.726980 TGTAACTACCCACATTCGTTAGT 57.273 39.130 0.00 0.00 0.00 2.24
49 50 6.832520 TGTAACTACCCACATTCGTTAGTA 57.167 37.500 0.00 0.00 0.00 1.82
50 51 6.620678 TGTAACTACCCACATTCGTTAGTAC 58.379 40.000 0.00 0.00 0.00 2.73
51 52 5.726980 AACTACCCACATTCGTTAGTACA 57.273 39.130 0.00 0.00 0.00 2.90
52 53 5.927281 ACTACCCACATTCGTTAGTACAT 57.073 39.130 0.00 0.00 0.00 2.29
53 54 6.290294 ACTACCCACATTCGTTAGTACATT 57.710 37.500 0.00 0.00 0.00 2.71
54 55 6.335777 ACTACCCACATTCGTTAGTACATTC 58.664 40.000 0.00 0.00 0.00 2.67
55 56 5.155278 ACCCACATTCGTTAGTACATTCA 57.845 39.130 0.00 0.00 0.00 2.57
56 57 4.933400 ACCCACATTCGTTAGTACATTCAC 59.067 41.667 0.00 0.00 0.00 3.18
57 58 4.032445 CCCACATTCGTTAGTACATTCACG 59.968 45.833 0.00 0.00 0.00 4.35
58 59 4.624024 CCACATTCGTTAGTACATTCACGT 59.376 41.667 0.00 0.00 34.24 4.49
59 60 5.119588 CCACATTCGTTAGTACATTCACGTT 59.880 40.000 0.00 0.00 34.24 3.99
60 61 6.007079 CACATTCGTTAGTACATTCACGTTG 58.993 40.000 0.00 3.71 34.24 4.10
61 62 5.119588 ACATTCGTTAGTACATTCACGTTGG 59.880 40.000 0.00 0.00 34.24 3.77
62 63 3.577667 TCGTTAGTACATTCACGTTGGG 58.422 45.455 0.00 0.00 34.24 4.12
63 64 3.255395 TCGTTAGTACATTCACGTTGGGA 59.745 43.478 0.00 0.00 34.24 4.37
64 65 3.989167 CGTTAGTACATTCACGTTGGGAA 59.011 43.478 0.00 0.00 0.00 3.97
65 66 4.448395 CGTTAGTACATTCACGTTGGGAAA 59.552 41.667 0.00 0.00 0.00 3.13
66 67 5.389098 CGTTAGTACATTCACGTTGGGAAAG 60.389 44.000 0.00 0.00 0.00 2.62
67 68 4.345859 AGTACATTCACGTTGGGAAAGA 57.654 40.909 0.00 0.00 0.00 2.52
68 69 4.906618 AGTACATTCACGTTGGGAAAGAT 58.093 39.130 0.00 0.00 0.00 2.40
69 70 4.695455 AGTACATTCACGTTGGGAAAGATG 59.305 41.667 0.00 0.00 0.00 2.90
70 71 3.750371 ACATTCACGTTGGGAAAGATGA 58.250 40.909 0.00 0.00 0.00 2.92
71 72 3.502211 ACATTCACGTTGGGAAAGATGAC 59.498 43.478 0.00 0.00 0.00 3.06
72 73 2.920724 TCACGTTGGGAAAGATGACA 57.079 45.000 0.00 0.00 0.00 3.58
73 74 3.417069 TCACGTTGGGAAAGATGACAT 57.583 42.857 0.00 0.00 0.00 3.06
74 75 3.334691 TCACGTTGGGAAAGATGACATC 58.665 45.455 7.39 7.39 0.00 3.06
75 76 2.420022 CACGTTGGGAAAGATGACATCC 59.580 50.000 11.92 0.00 0.00 3.51
76 77 2.305927 ACGTTGGGAAAGATGACATCCT 59.694 45.455 11.92 0.00 33.61 3.24
77 78 3.244911 ACGTTGGGAAAGATGACATCCTT 60.245 43.478 11.92 5.37 33.61 3.36
78 79 3.127548 CGTTGGGAAAGATGACATCCTTG 59.872 47.826 11.92 0.00 33.61 3.61
79 80 4.335416 GTTGGGAAAGATGACATCCTTGA 58.665 43.478 11.92 0.00 33.61 3.02
80 81 4.226427 TGGGAAAGATGACATCCTTGAG 57.774 45.455 11.92 0.00 33.61 3.02
81 82 3.054139 TGGGAAAGATGACATCCTTGAGG 60.054 47.826 11.92 0.00 33.61 3.86
82 83 3.054065 GGGAAAGATGACATCCTTGAGGT 60.054 47.826 11.92 0.00 36.34 3.85
83 84 3.944015 GGAAAGATGACATCCTTGAGGTG 59.056 47.826 11.92 0.00 36.34 4.00
84 85 4.566488 GGAAAGATGACATCCTTGAGGTGT 60.566 45.833 11.92 1.46 36.34 4.16
85 86 3.623906 AGATGACATCCTTGAGGTGTG 57.376 47.619 11.92 6.76 36.34 3.82
86 87 3.176411 AGATGACATCCTTGAGGTGTGA 58.824 45.455 11.92 3.30 36.34 3.58
87 88 3.584406 AGATGACATCCTTGAGGTGTGAA 59.416 43.478 11.92 1.08 36.34 3.18
88 89 4.226846 AGATGACATCCTTGAGGTGTGAAT 59.773 41.667 11.92 4.63 36.34 2.57
89 90 5.426509 AGATGACATCCTTGAGGTGTGAATA 59.573 40.000 11.92 0.00 36.34 1.75
90 91 5.089970 TGACATCCTTGAGGTGTGAATAG 57.910 43.478 9.11 0.00 36.34 1.73
91 92 4.777366 TGACATCCTTGAGGTGTGAATAGA 59.223 41.667 9.11 0.00 36.34 1.98
92 93 5.426509 TGACATCCTTGAGGTGTGAATAGAT 59.573 40.000 9.11 0.00 36.34 1.98
93 94 6.611236 TGACATCCTTGAGGTGTGAATAGATA 59.389 38.462 9.11 0.00 36.34 1.98
94 95 6.821388 ACATCCTTGAGGTGTGAATAGATAC 58.179 40.000 10.58 0.00 36.34 2.24
95 96 5.515797 TCCTTGAGGTGTGAATAGATACG 57.484 43.478 0.00 0.00 36.34 3.06
96 97 4.051922 CCTTGAGGTGTGAATAGATACGC 58.948 47.826 0.00 0.00 0.00 4.42
97 98 4.441495 CCTTGAGGTGTGAATAGATACGCA 60.441 45.833 0.00 0.00 0.00 5.24
98 99 4.729227 TGAGGTGTGAATAGATACGCAA 57.271 40.909 0.00 0.00 0.00 4.85
99 100 5.079689 TGAGGTGTGAATAGATACGCAAA 57.920 39.130 0.00 0.00 0.00 3.68
100 101 5.483811 TGAGGTGTGAATAGATACGCAAAA 58.516 37.500 0.00 0.00 0.00 2.44
101 102 5.935206 TGAGGTGTGAATAGATACGCAAAAA 59.065 36.000 0.00 0.00 0.00 1.94
102 103 6.597672 TGAGGTGTGAATAGATACGCAAAAAT 59.402 34.615 0.00 0.00 0.00 1.82
103 104 7.766738 TGAGGTGTGAATAGATACGCAAAAATA 59.233 33.333 0.00 0.00 0.00 1.40
104 105 8.142994 AGGTGTGAATAGATACGCAAAAATAG 57.857 34.615 0.00 0.00 0.00 1.73
105 106 7.226720 AGGTGTGAATAGATACGCAAAAATAGG 59.773 37.037 0.00 0.00 0.00 2.57
106 107 7.225931 GGTGTGAATAGATACGCAAAAATAGGA 59.774 37.037 0.00 0.00 0.00 2.94
107 108 8.609176 GTGTGAATAGATACGCAAAAATAGGAA 58.391 33.333 0.00 0.00 0.00 3.36
108 109 9.337396 TGTGAATAGATACGCAAAAATAGGAAT 57.663 29.630 0.00 0.00 0.00 3.01
109 110 9.599322 GTGAATAGATACGCAAAAATAGGAATG 57.401 33.333 0.00 0.00 0.00 2.67
110 111 9.554395 TGAATAGATACGCAAAAATAGGAATGA 57.446 29.630 0.00 0.00 0.00 2.57
128 129 8.893563 AGGAATGAAATATTTAAACCCACTGA 57.106 30.769 0.00 0.00 0.00 3.41
129 130 9.492730 AGGAATGAAATATTTAAACCCACTGAT 57.507 29.630 0.00 0.00 0.00 2.90
130 131 9.533253 GGAATGAAATATTTAAACCCACTGATG 57.467 33.333 0.00 0.00 0.00 3.07
134 135 9.527157 TGAAATATTTAAACCCACTGATGAAGA 57.473 29.630 0.00 0.00 0.00 2.87
139 140 7.921786 TTTAAACCCACTGATGAAGATACTG 57.078 36.000 0.00 0.00 0.00 2.74
140 141 5.505181 AAACCCACTGATGAAGATACTGT 57.495 39.130 0.00 0.00 0.00 3.55
141 142 4.478206 ACCCACTGATGAAGATACTGTG 57.522 45.455 0.00 0.00 34.77 3.66
142 143 4.096681 ACCCACTGATGAAGATACTGTGA 58.903 43.478 0.00 0.00 36.22 3.58
143 144 4.161189 ACCCACTGATGAAGATACTGTGAG 59.839 45.833 0.00 0.00 36.22 3.51
144 145 4.442612 CCCACTGATGAAGATACTGTGAGG 60.443 50.000 0.00 0.00 36.22 3.86
145 146 4.161189 CCACTGATGAAGATACTGTGAGGT 59.839 45.833 0.00 0.00 36.22 3.85
146 147 5.337894 CCACTGATGAAGATACTGTGAGGTT 60.338 44.000 0.00 0.00 36.22 3.50
147 148 6.169094 CACTGATGAAGATACTGTGAGGTTT 58.831 40.000 0.00 0.00 36.22 3.27
148 149 7.323420 CACTGATGAAGATACTGTGAGGTTTA 58.677 38.462 0.00 0.00 36.22 2.01
149 150 7.984050 CACTGATGAAGATACTGTGAGGTTTAT 59.016 37.037 0.00 0.00 36.22 1.40
150 151 7.984050 ACTGATGAAGATACTGTGAGGTTTATG 59.016 37.037 0.00 0.00 0.00 1.90
151 152 7.275183 TGATGAAGATACTGTGAGGTTTATGG 58.725 38.462 0.00 0.00 0.00 2.74
152 153 5.428253 TGAAGATACTGTGAGGTTTATGGC 58.572 41.667 0.00 0.00 0.00 4.40
153 154 5.189736 TGAAGATACTGTGAGGTTTATGGCT 59.810 40.000 0.00 0.00 0.00 4.75
154 155 6.382859 TGAAGATACTGTGAGGTTTATGGCTA 59.617 38.462 0.00 0.00 0.00 3.93
155 156 7.071196 TGAAGATACTGTGAGGTTTATGGCTAT 59.929 37.037 0.00 0.00 0.00 2.97
156 157 8.492415 AAGATACTGTGAGGTTTATGGCTATA 57.508 34.615 0.00 0.00 0.00 1.31
157 158 8.128322 AGATACTGTGAGGTTTATGGCTATAG 57.872 38.462 0.00 0.00 0.00 1.31
158 159 5.552870 ACTGTGAGGTTTATGGCTATAGG 57.447 43.478 1.04 0.00 0.00 2.57
159 160 4.969359 ACTGTGAGGTTTATGGCTATAGGT 59.031 41.667 1.04 0.00 0.00 3.08
160 161 5.163301 ACTGTGAGGTTTATGGCTATAGGTG 60.163 44.000 1.04 0.00 0.00 4.00
161 162 4.966168 TGTGAGGTTTATGGCTATAGGTGA 59.034 41.667 1.04 0.00 0.00 4.02
162 163 5.427157 TGTGAGGTTTATGGCTATAGGTGAA 59.573 40.000 1.04 0.00 0.00 3.18
163 164 5.992217 GTGAGGTTTATGGCTATAGGTGAAG 59.008 44.000 1.04 0.00 0.00 3.02
164 165 4.974399 AGGTTTATGGCTATAGGTGAAGC 58.026 43.478 1.04 0.00 38.03 3.86
165 166 3.746492 GGTTTATGGCTATAGGTGAAGCG 59.254 47.826 1.04 0.00 39.71 4.68
166 167 3.678056 TTATGGCTATAGGTGAAGCGG 57.322 47.619 1.04 0.00 39.71 5.52
167 168 0.687354 ATGGCTATAGGTGAAGCGGG 59.313 55.000 1.04 0.00 39.71 6.13
168 169 1.301795 GGCTATAGGTGAAGCGGGC 60.302 63.158 1.04 0.00 39.71 6.13
169 170 1.664965 GCTATAGGTGAAGCGGGCG 60.665 63.158 1.04 0.00 0.00 6.13
170 171 1.006102 CTATAGGTGAAGCGGGCGG 60.006 63.158 0.00 0.00 0.00 6.13
171 172 1.745320 CTATAGGTGAAGCGGGCGGT 61.745 60.000 0.00 0.00 0.00 5.68
172 173 1.332144 TATAGGTGAAGCGGGCGGTT 61.332 55.000 0.00 0.00 38.65 4.44
173 174 2.869503 ATAGGTGAAGCGGGCGGTTG 62.870 60.000 0.00 0.00 35.84 3.77
184 185 2.440065 GCGGTTGGCCATGGATGA 60.440 61.111 18.40 0.00 34.80 2.92
185 186 1.829533 GCGGTTGGCCATGGATGAT 60.830 57.895 18.40 0.00 34.80 2.45
186 187 2.035421 CGGTTGGCCATGGATGATG 58.965 57.895 18.40 0.00 34.09 3.07
187 188 0.752743 CGGTTGGCCATGGATGATGT 60.753 55.000 18.40 0.00 34.09 3.06
188 189 0.748450 GGTTGGCCATGGATGATGTG 59.252 55.000 18.40 0.00 34.09 3.21
189 190 0.748450 GTTGGCCATGGATGATGTGG 59.252 55.000 18.40 0.00 36.09 4.17
190 191 0.335705 TTGGCCATGGATGATGTGGT 59.664 50.000 18.40 0.00 35.44 4.16
191 192 0.106569 TGGCCATGGATGATGTGGTC 60.107 55.000 18.40 0.00 38.11 4.02
192 193 0.825010 GGCCATGGATGATGTGGTCC 60.825 60.000 18.40 0.00 35.44 4.46
201 202 5.517924 TGGATGATGTGGTCCATTAATTGT 58.482 37.500 0.00 0.00 39.51 2.71
202 203 6.667661 TGGATGATGTGGTCCATTAATTGTA 58.332 36.000 0.00 0.00 39.51 2.41
203 204 7.296856 TGGATGATGTGGTCCATTAATTGTAT 58.703 34.615 0.00 0.00 39.51 2.29
204 205 7.231115 TGGATGATGTGGTCCATTAATTGTATG 59.769 37.037 0.00 0.00 39.51 2.39
205 206 6.389830 TGATGTGGTCCATTAATTGTATGC 57.610 37.500 0.00 0.00 32.56 3.14
206 207 5.890419 TGATGTGGTCCATTAATTGTATGCA 59.110 36.000 0.00 0.00 32.56 3.96
207 208 6.550481 TGATGTGGTCCATTAATTGTATGCAT 59.450 34.615 3.79 3.79 32.56 3.96
208 209 6.788598 TGTGGTCCATTAATTGTATGCATT 57.211 33.333 3.54 0.00 0.00 3.56
209 210 7.888250 TGTGGTCCATTAATTGTATGCATTA 57.112 32.000 3.54 0.00 0.00 1.90
210 211 8.298729 TGTGGTCCATTAATTGTATGCATTAA 57.701 30.769 3.54 0.98 0.00 1.40
211 212 8.753133 TGTGGTCCATTAATTGTATGCATTAAA 58.247 29.630 3.54 0.00 0.00 1.52
212 213 9.030301 GTGGTCCATTAATTGTATGCATTAAAC 57.970 33.333 3.54 0.00 0.00 2.01
213 214 8.753133 TGGTCCATTAATTGTATGCATTAAACA 58.247 29.630 3.54 0.00 0.00 2.83
214 215 9.762933 GGTCCATTAATTGTATGCATTAAACAT 57.237 29.630 3.54 0.00 0.00 2.71
216 217 9.761504 TCCATTAATTGTATGCATTAAACATGG 57.238 29.630 3.54 7.83 0.00 3.66
217 218 9.761504 CCATTAATTGTATGCATTAAACATGGA 57.238 29.630 3.54 0.00 0.00 3.41
222 223 8.931385 ATTGTATGCATTAAACATGGAAGAAC 57.069 30.769 3.54 0.00 0.00 3.01
223 224 7.459795 TGTATGCATTAAACATGGAAGAACA 57.540 32.000 3.54 0.00 0.00 3.18
224 225 7.890515 TGTATGCATTAAACATGGAAGAACAA 58.109 30.769 3.54 0.00 0.00 2.83
225 226 8.530311 TGTATGCATTAAACATGGAAGAACAAT 58.470 29.630 3.54 0.00 0.00 2.71
226 227 9.023967 GTATGCATTAAACATGGAAGAACAATC 57.976 33.333 3.54 0.00 0.00 2.67
227 228 6.397272 TGCATTAAACATGGAAGAACAATCC 58.603 36.000 0.00 0.00 37.48 3.01
228 229 6.211184 TGCATTAAACATGGAAGAACAATCCT 59.789 34.615 0.00 0.00 37.85 3.24
229 230 7.395772 TGCATTAAACATGGAAGAACAATCCTA 59.604 33.333 0.00 0.00 37.85 2.94
230 231 7.702348 GCATTAAACATGGAAGAACAATCCTAC 59.298 37.037 0.00 0.00 37.85 3.18
231 232 8.739039 CATTAAACATGGAAGAACAATCCTACA 58.261 33.333 0.00 0.00 37.85 2.74
232 233 8.877864 TTAAACATGGAAGAACAATCCTACAT 57.122 30.769 0.00 0.00 37.85 2.29
233 234 7.396540 AAACATGGAAGAACAATCCTACATC 57.603 36.000 0.00 0.00 37.85 3.06
234 235 6.065976 ACATGGAAGAACAATCCTACATCA 57.934 37.500 0.00 0.00 37.85 3.07
235 236 6.666678 ACATGGAAGAACAATCCTACATCAT 58.333 36.000 0.00 0.00 37.85 2.45
236 237 7.805163 ACATGGAAGAACAATCCTACATCATA 58.195 34.615 0.00 0.00 37.85 2.15
237 238 8.443176 ACATGGAAGAACAATCCTACATCATAT 58.557 33.333 0.00 0.00 37.85 1.78
238 239 9.948964 CATGGAAGAACAATCCTACATCATATA 57.051 33.333 0.00 0.00 37.85 0.86
246 247 9.896645 AACAATCCTACATCATATATCATGGAC 57.103 33.333 1.41 0.00 0.00 4.02
247 248 9.050154 ACAATCCTACATCATATATCATGGACA 57.950 33.333 1.41 0.00 0.00 4.02
248 249 9.895138 CAATCCTACATCATATATCATGGACAA 57.105 33.333 1.41 0.00 0.00 3.18
260 261 7.905604 ATATCATGGACAATACATACAACCG 57.094 36.000 0.00 0.00 0.00 4.44
261 262 5.092554 TCATGGACAATACATACAACCGT 57.907 39.130 0.00 0.00 0.00 4.83
262 263 4.873259 TCATGGACAATACATACAACCGTG 59.127 41.667 0.00 0.00 35.20 4.94
263 264 4.274602 TGGACAATACATACAACCGTGT 57.725 40.909 0.00 0.00 42.09 4.49
264 265 3.997681 TGGACAATACATACAACCGTGTG 59.002 43.478 0.00 0.00 38.82 3.82
265 266 4.247258 GGACAATACATACAACCGTGTGA 58.753 43.478 0.00 0.00 38.82 3.58
266 267 4.873827 GGACAATACATACAACCGTGTGAT 59.126 41.667 0.00 0.00 38.82 3.06
267 268 5.220586 GGACAATACATACAACCGTGTGATG 60.221 44.000 0.00 0.00 38.82 3.07
268 269 5.483811 ACAATACATACAACCGTGTGATGA 58.516 37.500 0.00 0.00 38.82 2.92
269 270 6.112734 ACAATACATACAACCGTGTGATGAT 58.887 36.000 0.00 0.00 38.82 2.45
270 271 6.257849 ACAATACATACAACCGTGTGATGATC 59.742 38.462 0.00 0.00 38.82 2.92
271 272 4.471904 ACATACAACCGTGTGATGATCT 57.528 40.909 0.00 0.00 38.82 2.75
272 273 5.592104 ACATACAACCGTGTGATGATCTA 57.408 39.130 0.00 0.00 38.82 1.98
273 274 5.972935 ACATACAACCGTGTGATGATCTAA 58.027 37.500 0.00 0.00 38.82 2.10
274 275 5.810587 ACATACAACCGTGTGATGATCTAAC 59.189 40.000 0.00 0.00 38.82 2.34
275 276 3.596214 ACAACCGTGTGATGATCTAACC 58.404 45.455 0.00 0.00 36.31 2.85
276 277 3.007506 ACAACCGTGTGATGATCTAACCA 59.992 43.478 0.00 0.00 36.31 3.67
277 278 4.191544 CAACCGTGTGATGATCTAACCAT 58.808 43.478 0.00 0.00 0.00 3.55
278 279 4.060038 ACCGTGTGATGATCTAACCATC 57.940 45.455 0.00 0.00 40.48 3.51
279 280 3.450817 ACCGTGTGATGATCTAACCATCA 59.549 43.478 0.00 0.00 45.58 3.07
286 287 6.160576 TGATGATCTAACCATCATTGTCGA 57.839 37.500 0.00 0.00 43.67 4.20
287 288 6.581712 TGATGATCTAACCATCATTGTCGAA 58.418 36.000 0.00 0.00 43.67 3.71
288 289 6.703165 TGATGATCTAACCATCATTGTCGAAG 59.297 38.462 0.00 0.00 43.67 3.79
289 290 4.811024 TGATCTAACCATCATTGTCGAAGC 59.189 41.667 0.00 0.00 0.00 3.86
290 291 4.200838 TCTAACCATCATTGTCGAAGCA 57.799 40.909 0.00 0.00 0.00 3.91
291 292 4.183865 TCTAACCATCATTGTCGAAGCAG 58.816 43.478 0.00 0.00 0.00 4.24
292 293 2.479566 ACCATCATTGTCGAAGCAGT 57.520 45.000 0.00 0.00 0.00 4.40
293 294 2.783135 ACCATCATTGTCGAAGCAGTT 58.217 42.857 0.00 0.00 0.00 3.16
294 295 2.485426 ACCATCATTGTCGAAGCAGTTG 59.515 45.455 0.00 0.00 0.00 3.16
295 296 2.159476 CCATCATTGTCGAAGCAGTTGG 60.159 50.000 0.00 0.00 0.00 3.77
296 297 2.542020 TCATTGTCGAAGCAGTTGGA 57.458 45.000 0.00 0.00 0.00 3.53
297 298 3.057969 TCATTGTCGAAGCAGTTGGAT 57.942 42.857 0.00 0.00 0.00 3.41
298 299 3.002791 TCATTGTCGAAGCAGTTGGATC 58.997 45.455 0.00 0.00 0.00 3.36
299 300 2.839486 TTGTCGAAGCAGTTGGATCT 57.161 45.000 0.00 0.00 0.00 2.75
300 301 2.084610 TGTCGAAGCAGTTGGATCTG 57.915 50.000 0.00 0.00 38.35 2.90
301 302 1.344438 TGTCGAAGCAGTTGGATCTGT 59.656 47.619 0.00 0.00 37.70 3.41
302 303 1.728971 GTCGAAGCAGTTGGATCTGTG 59.271 52.381 0.00 0.00 37.70 3.66
303 304 1.081892 CGAAGCAGTTGGATCTGTGG 58.918 55.000 0.00 0.00 37.70 4.17
304 305 1.338105 CGAAGCAGTTGGATCTGTGGA 60.338 52.381 0.00 0.00 37.70 4.02
305 306 2.679059 CGAAGCAGTTGGATCTGTGGAT 60.679 50.000 0.00 0.00 37.70 3.41
306 307 3.350833 GAAGCAGTTGGATCTGTGGATT 58.649 45.455 0.00 0.00 37.70 3.01
307 308 3.446442 AGCAGTTGGATCTGTGGATTT 57.554 42.857 0.00 0.00 37.70 2.17
308 309 3.087031 AGCAGTTGGATCTGTGGATTTG 58.913 45.455 0.00 0.00 37.70 2.32
309 310 2.165030 GCAGTTGGATCTGTGGATTTGG 59.835 50.000 0.00 0.00 37.70 3.28
310 311 2.165030 CAGTTGGATCTGTGGATTTGGC 59.835 50.000 0.00 0.00 31.46 4.52
311 312 2.170166 GTTGGATCTGTGGATTTGGCA 58.830 47.619 0.00 0.00 31.46 4.92
312 313 2.762327 GTTGGATCTGTGGATTTGGCAT 59.238 45.455 0.00 0.00 31.46 4.40
313 314 3.104519 TGGATCTGTGGATTTGGCATT 57.895 42.857 0.00 0.00 31.46 3.56
314 315 3.443052 TGGATCTGTGGATTTGGCATTT 58.557 40.909 0.00 0.00 31.46 2.32
315 316 3.196039 TGGATCTGTGGATTTGGCATTTG 59.804 43.478 0.00 0.00 31.46 2.32
316 317 2.747396 TCTGTGGATTTGGCATTTGC 57.253 45.000 0.00 0.00 41.14 3.68
317 318 1.969208 TCTGTGGATTTGGCATTTGCA 59.031 42.857 4.74 0.00 44.36 4.08
318 319 2.070783 CTGTGGATTTGGCATTTGCAC 58.929 47.619 12.76 12.76 44.36 4.57
319 320 1.693062 TGTGGATTTGGCATTTGCACT 59.307 42.857 18.00 0.00 44.36 4.40
320 321 2.104451 TGTGGATTTGGCATTTGCACTT 59.896 40.909 18.00 0.00 44.36 3.16
321 322 3.140623 GTGGATTTGGCATTTGCACTTT 58.859 40.909 12.49 0.00 44.36 2.66
322 323 3.058777 GTGGATTTGGCATTTGCACTTTG 60.059 43.478 12.49 0.00 44.36 2.77
323 324 3.181457 TGGATTTGGCATTTGCACTTTGA 60.181 39.130 4.74 0.00 44.36 2.69
324 325 3.814283 GGATTTGGCATTTGCACTTTGAA 59.186 39.130 4.74 0.00 44.36 2.69
325 326 4.275443 GGATTTGGCATTTGCACTTTGAAA 59.725 37.500 4.74 0.00 44.36 2.69
326 327 5.048573 GGATTTGGCATTTGCACTTTGAAAT 60.049 36.000 4.74 0.00 44.36 2.17
327 328 4.815040 TTGGCATTTGCACTTTGAAATG 57.185 36.364 4.74 0.00 44.36 2.32
331 332 4.398549 CATTTGCACTTTGAAATGCCTG 57.601 40.909 8.92 3.02 41.33 4.85
332 333 3.815856 TTTGCACTTTGAAATGCCTGA 57.184 38.095 8.92 0.00 41.33 3.86
333 334 2.798976 TGCACTTTGAAATGCCTGAC 57.201 45.000 8.92 0.00 41.33 3.51
334 335 2.309613 TGCACTTTGAAATGCCTGACT 58.690 42.857 8.92 0.00 41.33 3.41
335 336 2.034939 TGCACTTTGAAATGCCTGACTG 59.965 45.455 8.92 0.00 41.33 3.51
336 337 2.035066 GCACTTTGAAATGCCTGACTGT 59.965 45.455 2.34 0.00 35.73 3.55
337 338 3.854784 GCACTTTGAAATGCCTGACTGTC 60.855 47.826 0.00 0.00 35.73 3.51
338 339 3.316029 CACTTTGAAATGCCTGACTGTCA 59.684 43.478 10.50 10.50 0.00 3.58
339 340 3.316308 ACTTTGAAATGCCTGACTGTCAC 59.684 43.478 6.36 0.00 0.00 3.67
340 341 2.636647 TGAAATGCCTGACTGTCACA 57.363 45.000 6.36 4.96 0.00 3.58
341 342 2.929641 TGAAATGCCTGACTGTCACAA 58.070 42.857 6.36 0.00 0.00 3.33
342 343 3.489355 TGAAATGCCTGACTGTCACAAT 58.511 40.909 6.36 0.00 0.00 2.71
343 344 3.253921 TGAAATGCCTGACTGTCACAATG 59.746 43.478 6.36 0.00 0.00 2.82
344 345 1.171308 ATGCCTGACTGTCACAATGC 58.829 50.000 6.36 7.96 0.00 3.56
345 346 0.890542 TGCCTGACTGTCACAATGCC 60.891 55.000 6.36 0.00 0.00 4.40
346 347 1.589716 GCCTGACTGTCACAATGCCC 61.590 60.000 6.36 0.00 0.00 5.36
347 348 0.037303 CCTGACTGTCACAATGCCCT 59.963 55.000 6.36 0.00 0.00 5.19
348 349 1.446907 CTGACTGTCACAATGCCCTC 58.553 55.000 6.36 0.00 0.00 4.30
349 350 0.764271 TGACTGTCACAATGCCCTCA 59.236 50.000 6.36 0.00 0.00 3.86
350 351 1.352017 TGACTGTCACAATGCCCTCAT 59.648 47.619 6.36 0.00 33.53 2.90
351 352 2.224843 TGACTGTCACAATGCCCTCATT 60.225 45.455 6.36 0.00 43.31 2.57
357 358 4.664062 AATGCCCTCATTGTCCCG 57.336 55.556 0.00 0.00 41.12 5.14
358 359 1.754234 AATGCCCTCATTGTCCCGC 60.754 57.895 0.00 0.00 41.12 6.13
359 360 4.776322 TGCCCTCATTGTCCCGCG 62.776 66.667 0.00 0.00 0.00 6.46
361 362 3.781307 CCCTCATTGTCCCGCGGA 61.781 66.667 30.73 10.38 0.00 5.54
370 371 4.670199 TCCCGCGGACATCTCTTA 57.330 55.556 30.73 0.00 0.00 2.10
371 372 2.112898 TCCCGCGGACATCTCTTAC 58.887 57.895 30.73 0.00 0.00 2.34
372 373 0.681887 TCCCGCGGACATCTCTTACA 60.682 55.000 30.73 0.00 0.00 2.41
373 374 0.389391 CCCGCGGACATCTCTTACAT 59.611 55.000 30.73 0.00 0.00 2.29
374 375 1.202533 CCCGCGGACATCTCTTACATT 60.203 52.381 30.73 0.00 0.00 2.71
375 376 2.550978 CCGCGGACATCTCTTACATTT 58.449 47.619 24.07 0.00 0.00 2.32
376 377 3.491964 CCCGCGGACATCTCTTACATTTA 60.492 47.826 30.73 0.00 0.00 1.40
377 378 4.116961 CCGCGGACATCTCTTACATTTAA 58.883 43.478 24.07 0.00 0.00 1.52
378 379 4.569162 CCGCGGACATCTCTTACATTTAAA 59.431 41.667 24.07 0.00 0.00 1.52
379 380 5.064198 CCGCGGACATCTCTTACATTTAAAA 59.936 40.000 24.07 0.00 0.00 1.52
380 381 6.185399 CGCGGACATCTCTTACATTTAAAAG 58.815 40.000 0.00 0.00 0.00 2.27
381 382 6.487103 GCGGACATCTCTTACATTTAAAAGG 58.513 40.000 0.00 0.00 0.00 3.11
382 383 6.487103 CGGACATCTCTTACATTTAAAAGGC 58.513 40.000 0.00 0.00 0.00 4.35
383 384 6.316390 CGGACATCTCTTACATTTAAAAGGCT 59.684 38.462 0.00 0.00 0.00 4.58
384 385 7.148239 CGGACATCTCTTACATTTAAAAGGCTT 60.148 37.037 0.00 0.00 0.00 4.35
385 386 7.970614 GGACATCTCTTACATTTAAAAGGCTTG 59.029 37.037 0.00 0.00 0.00 4.01
386 387 7.315890 ACATCTCTTACATTTAAAAGGCTTGC 58.684 34.615 0.00 0.00 0.00 4.01
387 388 7.177392 ACATCTCTTACATTTAAAAGGCTTGCT 59.823 33.333 0.00 0.00 0.00 3.91
388 389 8.677300 CATCTCTTACATTTAAAAGGCTTGCTA 58.323 33.333 0.00 0.00 0.00 3.49
389 390 8.040716 TCTCTTACATTTAAAAGGCTTGCTAC 57.959 34.615 0.00 0.00 0.00 3.58
390 391 7.883311 TCTCTTACATTTAAAAGGCTTGCTACT 59.117 33.333 0.00 0.00 0.00 2.57
391 392 7.816640 TCTTACATTTAAAAGGCTTGCTACTG 58.183 34.615 0.00 0.00 0.00 2.74
392 393 5.391312 ACATTTAAAAGGCTTGCTACTGG 57.609 39.130 0.00 0.00 0.00 4.00
393 394 4.832823 ACATTTAAAAGGCTTGCTACTGGT 59.167 37.500 0.00 0.00 0.00 4.00
394 395 5.048013 ACATTTAAAAGGCTTGCTACTGGTC 60.048 40.000 0.00 0.00 0.00 4.02
395 396 2.656947 AAAAGGCTTGCTACTGGTCA 57.343 45.000 0.00 0.00 0.00 4.02
396 397 2.656947 AAAGGCTTGCTACTGGTCAA 57.343 45.000 0.00 0.00 0.00 3.18
397 398 2.191128 AAGGCTTGCTACTGGTCAAG 57.809 50.000 0.00 0.00 41.79 3.02
402 403 2.771089 CTTGCTACTGGTCAAGCTTCA 58.229 47.619 0.00 0.00 39.53 3.02
403 404 2.169832 TGCTACTGGTCAAGCTTCAC 57.830 50.000 0.00 0.00 39.53 3.18
404 405 1.416030 TGCTACTGGTCAAGCTTCACA 59.584 47.619 1.96 0.00 39.53 3.58
405 406 2.038952 TGCTACTGGTCAAGCTTCACAT 59.961 45.455 1.96 0.00 39.53 3.21
406 407 3.077359 GCTACTGGTCAAGCTTCACATT 58.923 45.455 1.96 0.00 35.80 2.71
407 408 3.120060 GCTACTGGTCAAGCTTCACATTG 60.120 47.826 1.96 0.00 35.80 2.82
408 409 1.610522 ACTGGTCAAGCTTCACATTGC 59.389 47.619 1.96 0.00 0.00 3.56
409 410 1.610038 CTGGTCAAGCTTCACATTGCA 59.390 47.619 1.96 0.00 0.00 4.08
410 411 2.030371 TGGTCAAGCTTCACATTGCAA 58.970 42.857 1.96 0.00 0.00 4.08
411 412 2.223782 TGGTCAAGCTTCACATTGCAAC 60.224 45.455 0.00 0.00 0.00 4.17
412 413 2.035066 GGTCAAGCTTCACATTGCAACT 59.965 45.455 0.00 0.00 0.00 3.16
413 414 3.253188 GGTCAAGCTTCACATTGCAACTA 59.747 43.478 0.00 0.00 0.00 2.24
414 415 4.082571 GGTCAAGCTTCACATTGCAACTAT 60.083 41.667 0.00 0.00 0.00 2.12
415 416 4.855388 GTCAAGCTTCACATTGCAACTATG 59.145 41.667 0.00 0.00 0.00 2.23
416 417 4.520111 TCAAGCTTCACATTGCAACTATGT 59.480 37.500 0.00 0.00 36.70 2.29
417 418 5.009911 TCAAGCTTCACATTGCAACTATGTT 59.990 36.000 0.00 0.00 34.11 2.71
418 419 4.801891 AGCTTCACATTGCAACTATGTTG 58.198 39.130 0.00 6.12 34.11 3.33
419 420 4.279169 AGCTTCACATTGCAACTATGTTGT 59.721 37.500 0.00 0.00 34.11 3.32
420 421 4.618489 GCTTCACATTGCAACTATGTTGTC 59.382 41.667 0.00 5.46 34.11 3.18
421 422 5.761003 CTTCACATTGCAACTATGTTGTCA 58.239 37.500 0.00 7.58 34.11 3.58
422 423 5.361135 TCACATTGCAACTATGTTGTCAG 57.639 39.130 0.00 0.00 34.11 3.51
423 424 3.916172 CACATTGCAACTATGTTGTCAGC 59.084 43.478 0.00 0.00 34.11 4.26
424 425 2.967459 TTGCAACTATGTTGTCAGCG 57.033 45.000 11.35 0.00 0.00 5.18
425 426 2.162319 TGCAACTATGTTGTCAGCGA 57.838 45.000 11.35 0.00 0.00 4.93
426 427 1.798223 TGCAACTATGTTGTCAGCGAC 59.202 47.619 11.35 2.32 0.00 5.19
427 428 1.128692 GCAACTATGTTGTCAGCGACC 59.871 52.381 11.35 0.00 0.00 4.79
428 429 2.412870 CAACTATGTTGTCAGCGACCA 58.587 47.619 6.30 0.00 0.00 4.02
429 430 2.080286 ACTATGTTGTCAGCGACCAC 57.920 50.000 6.30 6.21 0.00 4.16
430 431 0.992072 CTATGTTGTCAGCGACCACG 59.008 55.000 6.30 0.00 42.93 4.94
431 432 0.599060 TATGTTGTCAGCGACCACGA 59.401 50.000 6.30 0.00 42.66 4.35
432 433 0.249699 ATGTTGTCAGCGACCACGAA 60.250 50.000 6.30 0.00 42.66 3.85
433 434 0.249699 TGTTGTCAGCGACCACGAAT 60.250 50.000 6.30 0.00 42.66 3.34
434 435 1.000052 TGTTGTCAGCGACCACGAATA 60.000 47.619 6.30 0.00 42.66 1.75
435 436 1.389106 GTTGTCAGCGACCACGAATAC 59.611 52.381 6.30 0.00 42.66 1.89
436 437 0.599060 TGTCAGCGACCACGAATACA 59.401 50.000 6.30 0.00 42.66 2.29
437 438 1.000052 TGTCAGCGACCACGAATACAA 60.000 47.619 6.30 0.00 42.66 2.41
438 439 1.389106 GTCAGCGACCACGAATACAAC 59.611 52.381 0.00 0.00 42.66 3.32
439 440 1.000052 TCAGCGACCACGAATACAACA 60.000 47.619 0.00 0.00 42.66 3.33
440 441 1.999735 CAGCGACCACGAATACAACAT 59.000 47.619 0.00 0.00 42.66 2.71
441 442 3.119424 TCAGCGACCACGAATACAACATA 60.119 43.478 0.00 0.00 42.66 2.29
442 443 3.242944 CAGCGACCACGAATACAACATAG 59.757 47.826 0.00 0.00 42.66 2.23
443 444 3.129813 AGCGACCACGAATACAACATAGA 59.870 43.478 0.00 0.00 42.66 1.98
444 445 3.242248 GCGACCACGAATACAACATAGAC 59.758 47.826 0.00 0.00 42.66 2.59
445 446 4.669318 CGACCACGAATACAACATAGACT 58.331 43.478 0.00 0.00 42.66 3.24
446 447 5.731406 GCGACCACGAATACAACATAGACTA 60.731 44.000 0.00 0.00 42.66 2.59
447 448 5.680229 CGACCACGAATACAACATAGACTAC 59.320 44.000 0.00 0.00 42.66 2.73
448 449 6.457934 CGACCACGAATACAACATAGACTACT 60.458 42.308 0.00 0.00 42.66 2.57
449 450 7.254556 CGACCACGAATACAACATAGACTACTA 60.255 40.741 0.00 0.00 42.66 1.82
450 451 7.928103 ACCACGAATACAACATAGACTACTAG 58.072 38.462 0.00 0.00 31.78 2.57
461 463 7.283625 ACATAGACTACTAGCTTGAAGATGG 57.716 40.000 1.04 0.00 31.78 3.51
473 475 6.127793 AGCTTGAAGATGGCATCTATTCTTT 58.872 36.000 29.02 13.38 39.08 2.52
477 479 7.991084 TGAAGATGGCATCTATTCTTTATGG 57.009 36.000 29.02 0.00 39.08 2.74
483 485 5.015072 TGGCATCTATTCTTTATGGGGCATA 59.985 40.000 0.00 0.00 0.00 3.14
502 504 7.043565 GGGCATATTTGTGAAGACAATTCAAT 58.956 34.615 0.00 0.00 41.77 2.57
538 540 3.211045 GGTTCTTCCAACAGTTGTAGCA 58.789 45.455 12.42 0.00 35.97 3.49
613 615 0.761187 CTAGCTGCCATGCTAAGGGA 59.239 55.000 0.00 0.00 43.84 4.20
614 616 0.469917 TAGCTGCCATGCTAAGGGAC 59.530 55.000 0.00 0.00 41.89 4.46
615 617 1.277580 AGCTGCCATGCTAAGGGACT 61.278 55.000 0.00 0.00 42.10 3.85
701 703 2.928116 GTCTTCTTATGTACGTGTGCCC 59.072 50.000 0.00 0.00 0.00 5.36
809 811 0.390472 GGCTCCCTCAAACTCGTCAG 60.390 60.000 0.00 0.00 0.00 3.51
1462 1464 1.214923 TGGTATGCAGCAATCCATCCA 59.785 47.619 15.30 8.15 0.00 3.41
1799 1806 5.334319 CATGCAAGTAACATGTGGTGTATG 58.666 41.667 0.00 7.01 41.14 2.39
1800 1807 3.190327 TGCAAGTAACATGTGGTGTATGC 59.810 43.478 0.00 6.87 41.14 3.14
1801 1808 3.190327 GCAAGTAACATGTGGTGTATGCA 59.810 43.478 0.00 0.00 41.14 3.96
1802 1809 4.320861 GCAAGTAACATGTGGTGTATGCAA 60.321 41.667 0.00 0.00 41.14 4.08
1803 1810 5.767269 CAAGTAACATGTGGTGTATGCAAA 58.233 37.500 0.00 0.00 41.14 3.68
1804 1811 6.389091 CAAGTAACATGTGGTGTATGCAAAT 58.611 36.000 0.00 0.00 41.14 2.32
2500 2676 7.446106 TTCTACAACATATACCCCATCTGTT 57.554 36.000 0.00 0.00 35.06 3.16
2519 2696 8.875168 CATCTGTTTTAAGATATACTCCCTCCT 58.125 37.037 0.00 0.00 35.09 3.69
2536 2713 9.225682 ACTCCCTCCTTTTCTAATTATATGACA 57.774 33.333 0.00 0.00 0.00 3.58
2544 2721 9.855361 CTTTTCTAATTATATGACAGCGAAGTG 57.145 33.333 0.00 0.00 0.00 3.16
2546 2723 7.930513 TCTAATTATATGACAGCGAAGTGTG 57.069 36.000 0.00 0.00 0.00 3.82
2548 2725 8.626526 TCTAATTATATGACAGCGAAGTGTGTA 58.373 33.333 0.00 0.00 0.00 2.90
2577 3649 4.183865 ACGCTGATTCGATGAAAATCTGA 58.816 39.130 5.42 0.00 35.35 3.27
2585 3657 7.809331 TGATTCGATGAAAATCTGAAAACTTGG 59.191 33.333 0.00 0.00 34.80 3.61
2613 3685 6.007936 CAATCCGTTGGATCTTTAACACAA 57.992 37.500 0.00 0.00 42.27 3.33
2627 3699 0.251354 ACACAAGGCGCAGATGAGAT 59.749 50.000 10.83 0.00 0.00 2.75
2686 3760 8.766492 TTTATATAATCCCCTGTCTTACCCAT 57.234 34.615 0.00 0.00 0.00 4.00
2705 3779 6.963117 CCCATGGGGTAGGAAATAATACTA 57.037 41.667 24.53 0.00 38.25 1.82
2732 3806 4.704540 ACAATTTCGCCTTATCCATTGTCA 59.295 37.500 0.00 0.00 30.75 3.58
2741 3827 1.635817 ATCCATTGTCACCTCCCCGG 61.636 60.000 0.00 0.00 39.35 5.73
2954 4473 5.210715 CAGTGCAAGAATCTTGTTTCTCAC 58.789 41.667 22.28 19.41 34.89 3.51
2978 4497 3.735746 GCATGTTGTTTGCTCCAGTTTAC 59.264 43.478 0.00 0.00 37.14 2.01
2996 4515 7.549134 CCAGTTTACTGCATAGAAGTGATGTTA 59.451 37.037 4.34 0.00 42.47 2.41
3007 4526 9.241317 CATAGAAGTGATGTTAAAATCATTGCC 57.759 33.333 11.51 4.17 38.76 4.52
3018 4537 9.941325 TGTTAAAATCATTGCCTGAATATTTGT 57.059 25.926 0.00 0.00 37.44 2.83
3022 4541 9.590451 AAAATCATTGCCTGAATATTTGTACTG 57.410 29.630 0.00 0.00 37.44 2.74
3023 4542 8.523915 AATCATTGCCTGAATATTTGTACTGA 57.476 30.769 0.00 0.00 37.44 3.41
3024 4543 7.936496 TCATTGCCTGAATATTTGTACTGAA 57.064 32.000 0.00 0.00 0.00 3.02
3025 4544 7.988737 TCATTGCCTGAATATTTGTACTGAAG 58.011 34.615 0.00 0.00 0.00 3.02
3026 4545 5.818136 TGCCTGAATATTTGTACTGAAGC 57.182 39.130 0.00 0.00 0.00 3.86
3027 4546 5.500234 TGCCTGAATATTTGTACTGAAGCT 58.500 37.500 0.00 0.00 0.00 3.74
3028 4547 5.355071 TGCCTGAATATTTGTACTGAAGCTG 59.645 40.000 0.00 0.00 0.00 4.24
3029 4548 5.586243 GCCTGAATATTTGTACTGAAGCTGA 59.414 40.000 0.00 0.00 0.00 4.26
3030 4549 6.457528 GCCTGAATATTTGTACTGAAGCTGAC 60.458 42.308 0.00 0.00 0.00 3.51
3031 4550 6.820656 CCTGAATATTTGTACTGAAGCTGACT 59.179 38.462 0.00 0.00 0.00 3.41
3032 4551 7.335422 CCTGAATATTTGTACTGAAGCTGACTT 59.665 37.037 0.00 0.00 39.43 3.01
3033 4552 8.032952 TGAATATTTGTACTGAAGCTGACTTG 57.967 34.615 0.00 0.00 35.82 3.16
3034 4553 7.661437 TGAATATTTGTACTGAAGCTGACTTGT 59.339 33.333 0.00 0.00 35.82 3.16
3035 4554 7.986085 ATATTTGTACTGAAGCTGACTTGTT 57.014 32.000 0.00 0.00 35.82 2.83
3036 4555 5.484173 TTTGTACTGAAGCTGACTTGTTG 57.516 39.130 0.00 0.00 35.82 3.33
3037 4556 3.466836 TGTACTGAAGCTGACTTGTTGG 58.533 45.455 0.00 0.00 35.82 3.77
3038 4557 3.133901 TGTACTGAAGCTGACTTGTTGGA 59.866 43.478 0.00 0.00 35.82 3.53
3039 4558 3.498774 ACTGAAGCTGACTTGTTGGAT 57.501 42.857 0.00 0.00 35.82 3.41
3040 4559 3.144506 ACTGAAGCTGACTTGTTGGATG 58.855 45.455 0.00 0.00 35.82 3.51
3041 4560 1.881973 TGAAGCTGACTTGTTGGATGC 59.118 47.619 0.00 0.00 35.82 3.91
3042 4561 1.881973 GAAGCTGACTTGTTGGATGCA 59.118 47.619 0.00 0.00 35.82 3.96
3043 4562 2.211250 AGCTGACTTGTTGGATGCAT 57.789 45.000 0.00 0.00 0.00 3.96
3044 4563 2.522185 AGCTGACTTGTTGGATGCATT 58.478 42.857 0.00 0.00 0.00 3.56
3052 4571 6.433716 TGACTTGTTGGATGCATTTTAGATGA 59.566 34.615 0.00 0.00 0.00 2.92
3076 4595 4.749099 CCTTGTATCTCTGAATAGCTGTGC 59.251 45.833 0.00 0.00 0.00 4.57
3078 4597 4.941657 TGTATCTCTGAATAGCTGTGCAG 58.058 43.478 12.21 12.21 0.00 4.41
3124 4643 8.919777 AACTGTTCCTTTTTACTAGCTACAAT 57.080 30.769 0.00 0.00 0.00 2.71
3142 4661 4.711399 ACAATTAGACGGGGTAATAAGCC 58.289 43.478 0.00 0.00 42.94 4.35
3148 4667 1.064979 ACGGGGTAATAAGCCACAAGG 60.065 52.381 0.00 0.00 45.66 3.61
3162 4681 3.579151 GCCACAAGGGGTTAATTGGTTAA 59.421 43.478 0.00 0.00 37.04 2.01
3166 4685 6.212589 CCACAAGGGGTTAATTGGTTAATTCT 59.787 38.462 0.00 0.00 37.64 2.40
3167 4686 7.096551 CACAAGGGGTTAATTGGTTAATTCTG 58.903 38.462 0.00 0.00 37.64 3.02
3181 4700 6.015519 TGGTTAATTCTGATTCCTGTTGGTTG 60.016 38.462 0.00 0.00 34.23 3.77
3183 4702 7.175990 GGTTAATTCTGATTCCTGTTGGTTGTA 59.824 37.037 0.00 0.00 34.23 2.41
3236 4755 3.248024 AGACTGAGGATGTTAACCACCA 58.752 45.455 16.69 3.17 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.668541 TTCATATGCAAGCTCTCAAACTAC 57.331 37.500 0.00 0.00 0.00 2.73
1 2 7.870509 ATTTCATATGCAAGCTCTCAAACTA 57.129 32.000 0.00 0.00 0.00 2.24
2 3 6.770746 ATTTCATATGCAAGCTCTCAAACT 57.229 33.333 0.00 0.00 0.00 2.66
3 4 6.810182 ACAATTTCATATGCAAGCTCTCAAAC 59.190 34.615 0.00 0.00 0.00 2.93
4 5 6.927416 ACAATTTCATATGCAAGCTCTCAAA 58.073 32.000 0.00 0.00 0.00 2.69
5 6 6.519679 ACAATTTCATATGCAAGCTCTCAA 57.480 33.333 0.00 0.00 0.00 3.02
6 7 7.337689 AGTTACAATTTCATATGCAAGCTCTCA 59.662 33.333 0.00 0.00 0.00 3.27
7 8 7.701445 AGTTACAATTTCATATGCAAGCTCTC 58.299 34.615 0.00 0.00 0.00 3.20
8 9 7.636150 AGTTACAATTTCATATGCAAGCTCT 57.364 32.000 0.00 0.00 0.00 4.09
9 10 7.857885 GGTAGTTACAATTTCATATGCAAGCTC 59.142 37.037 0.00 0.00 0.00 4.09
10 11 7.201821 GGGTAGTTACAATTTCATATGCAAGCT 60.202 37.037 0.00 0.00 0.00 3.74
11 12 6.918022 GGGTAGTTACAATTTCATATGCAAGC 59.082 38.462 0.00 0.00 0.00 4.01
12 13 7.915397 GTGGGTAGTTACAATTTCATATGCAAG 59.085 37.037 0.00 0.00 0.00 4.01
13 14 7.394641 TGTGGGTAGTTACAATTTCATATGCAA 59.605 33.333 0.00 0.00 0.00 4.08
14 15 6.887002 TGTGGGTAGTTACAATTTCATATGCA 59.113 34.615 0.00 0.00 0.00 3.96
15 16 7.328277 TGTGGGTAGTTACAATTTCATATGC 57.672 36.000 0.00 0.00 0.00 3.14
16 17 9.950680 GAATGTGGGTAGTTACAATTTCATATG 57.049 33.333 0.00 0.00 0.00 1.78
17 18 8.836413 CGAATGTGGGTAGTTACAATTTCATAT 58.164 33.333 0.00 0.00 0.00 1.78
18 19 7.825270 ACGAATGTGGGTAGTTACAATTTCATA 59.175 33.333 0.00 0.00 0.00 2.15
19 20 6.657541 ACGAATGTGGGTAGTTACAATTTCAT 59.342 34.615 0.00 0.00 0.00 2.57
20 21 5.998981 ACGAATGTGGGTAGTTACAATTTCA 59.001 36.000 0.00 0.00 0.00 2.69
21 22 6.490566 ACGAATGTGGGTAGTTACAATTTC 57.509 37.500 0.00 0.00 0.00 2.17
22 23 6.887626 AACGAATGTGGGTAGTTACAATTT 57.112 33.333 0.00 0.00 0.00 1.82
23 24 7.163441 ACTAACGAATGTGGGTAGTTACAATT 58.837 34.615 0.00 0.00 0.00 2.32
24 25 6.704310 ACTAACGAATGTGGGTAGTTACAAT 58.296 36.000 0.00 0.00 0.00 2.71
25 26 6.100404 ACTAACGAATGTGGGTAGTTACAA 57.900 37.500 0.00 0.00 0.00 2.41
26 27 5.726980 ACTAACGAATGTGGGTAGTTACA 57.273 39.130 0.00 0.00 0.00 2.41
27 28 6.620678 TGTACTAACGAATGTGGGTAGTTAC 58.379 40.000 0.00 0.00 0.00 2.50
28 29 6.832520 TGTACTAACGAATGTGGGTAGTTA 57.167 37.500 0.00 0.00 0.00 2.24
29 30 5.726980 TGTACTAACGAATGTGGGTAGTT 57.273 39.130 0.00 0.00 0.00 2.24
30 31 5.927281 ATGTACTAACGAATGTGGGTAGT 57.073 39.130 0.00 0.00 0.00 2.73
31 32 6.255020 GTGAATGTACTAACGAATGTGGGTAG 59.745 42.308 0.00 0.00 0.00 3.18
32 33 6.101332 GTGAATGTACTAACGAATGTGGGTA 58.899 40.000 0.00 0.00 0.00 3.69
33 34 4.933400 GTGAATGTACTAACGAATGTGGGT 59.067 41.667 0.00 0.00 0.00 4.51
34 35 4.032445 CGTGAATGTACTAACGAATGTGGG 59.968 45.833 0.00 0.00 38.27 4.61
35 36 4.624024 ACGTGAATGTACTAACGAATGTGG 59.376 41.667 14.13 0.00 39.27 4.17
36 37 5.756950 ACGTGAATGTACTAACGAATGTG 57.243 39.130 14.13 0.00 39.27 3.21
37 38 5.119588 CCAACGTGAATGTACTAACGAATGT 59.880 40.000 14.13 0.00 39.27 2.71
38 39 5.445407 CCCAACGTGAATGTACTAACGAATG 60.445 44.000 14.13 11.98 39.27 2.67
39 40 4.628333 CCCAACGTGAATGTACTAACGAAT 59.372 41.667 14.13 3.70 39.27 3.34
40 41 3.989167 CCCAACGTGAATGTACTAACGAA 59.011 43.478 14.13 0.00 39.27 3.85
41 42 3.255395 TCCCAACGTGAATGTACTAACGA 59.745 43.478 14.13 0.00 39.27 3.85
42 43 3.577667 TCCCAACGTGAATGTACTAACG 58.422 45.455 0.00 1.75 41.64 3.18
43 44 5.697633 TCTTTCCCAACGTGAATGTACTAAC 59.302 40.000 0.00 0.00 0.00 2.34
44 45 5.856156 TCTTTCCCAACGTGAATGTACTAA 58.144 37.500 0.00 0.00 0.00 2.24
45 46 5.471556 TCTTTCCCAACGTGAATGTACTA 57.528 39.130 0.00 0.00 0.00 1.82
46 47 4.345859 TCTTTCCCAACGTGAATGTACT 57.654 40.909 0.00 0.00 0.00 2.73
47 48 4.693566 TCATCTTTCCCAACGTGAATGTAC 59.306 41.667 0.00 0.00 0.00 2.90
48 49 4.693566 GTCATCTTTCCCAACGTGAATGTA 59.306 41.667 0.00 0.00 0.00 2.29
49 50 3.502211 GTCATCTTTCCCAACGTGAATGT 59.498 43.478 0.00 0.00 0.00 2.71
50 51 3.501828 TGTCATCTTTCCCAACGTGAATG 59.498 43.478 0.00 0.00 0.00 2.67
51 52 3.750371 TGTCATCTTTCCCAACGTGAAT 58.250 40.909 0.00 0.00 0.00 2.57
52 53 3.201353 TGTCATCTTTCCCAACGTGAA 57.799 42.857 0.00 0.00 0.00 3.18
53 54 2.920724 TGTCATCTTTCCCAACGTGA 57.079 45.000 0.00 0.00 0.00 4.35
54 55 2.420022 GGATGTCATCTTTCCCAACGTG 59.580 50.000 12.54 0.00 0.00 4.49
55 56 2.305927 AGGATGTCATCTTTCCCAACGT 59.694 45.455 12.54 0.00 0.00 3.99
56 57 2.991250 AGGATGTCATCTTTCCCAACG 58.009 47.619 12.54 0.00 0.00 4.10
57 58 4.335416 TCAAGGATGTCATCTTTCCCAAC 58.665 43.478 12.54 0.00 0.00 3.77
58 59 4.568380 CCTCAAGGATGTCATCTTTCCCAA 60.568 45.833 12.54 0.00 37.39 4.12
59 60 3.054139 CCTCAAGGATGTCATCTTTCCCA 60.054 47.826 12.54 0.00 37.39 4.37
60 61 3.054065 ACCTCAAGGATGTCATCTTTCCC 60.054 47.826 12.54 0.00 38.94 3.97
61 62 3.944015 CACCTCAAGGATGTCATCTTTCC 59.056 47.826 12.54 0.00 38.94 3.13
62 63 4.394300 CACACCTCAAGGATGTCATCTTTC 59.606 45.833 12.54 0.00 38.94 2.62
63 64 4.042062 TCACACCTCAAGGATGTCATCTTT 59.958 41.667 12.54 8.51 38.94 2.52
64 65 3.584406 TCACACCTCAAGGATGTCATCTT 59.416 43.478 12.54 1.90 38.94 2.40
65 66 3.176411 TCACACCTCAAGGATGTCATCT 58.824 45.455 12.54 0.00 38.94 2.90
66 67 3.616956 TCACACCTCAAGGATGTCATC 57.383 47.619 4.06 4.06 38.94 2.92
67 68 4.581309 ATTCACACCTCAAGGATGTCAT 57.419 40.909 2.30 0.00 38.94 3.06
68 69 4.777366 TCTATTCACACCTCAAGGATGTCA 59.223 41.667 2.30 0.00 38.94 3.58
69 70 5.344743 TCTATTCACACCTCAAGGATGTC 57.655 43.478 2.30 0.00 38.94 3.06
70 71 5.965033 ATCTATTCACACCTCAAGGATGT 57.035 39.130 2.30 1.06 38.94 3.06
71 72 5.923114 CGTATCTATTCACACCTCAAGGATG 59.077 44.000 2.30 1.13 38.94 3.51
72 73 5.509840 GCGTATCTATTCACACCTCAAGGAT 60.510 44.000 2.30 0.00 38.94 3.24
73 74 4.202121 GCGTATCTATTCACACCTCAAGGA 60.202 45.833 2.30 0.00 38.94 3.36
74 75 4.051922 GCGTATCTATTCACACCTCAAGG 58.948 47.826 0.00 0.00 42.17 3.61
75 76 4.682787 TGCGTATCTATTCACACCTCAAG 58.317 43.478 0.00 0.00 0.00 3.02
76 77 4.729227 TGCGTATCTATTCACACCTCAA 57.271 40.909 0.00 0.00 0.00 3.02
77 78 4.729227 TTGCGTATCTATTCACACCTCA 57.271 40.909 0.00 0.00 0.00 3.86
78 79 6.417191 TTTTTGCGTATCTATTCACACCTC 57.583 37.500 0.00 0.00 0.00 3.85
79 80 7.226720 CCTATTTTTGCGTATCTATTCACACCT 59.773 37.037 0.00 0.00 0.00 4.00
80 81 7.225931 TCCTATTTTTGCGTATCTATTCACACC 59.774 37.037 0.00 0.00 0.00 4.16
81 82 8.138365 TCCTATTTTTGCGTATCTATTCACAC 57.862 34.615 0.00 0.00 0.00 3.82
82 83 8.725405 TTCCTATTTTTGCGTATCTATTCACA 57.275 30.769 0.00 0.00 0.00 3.58
83 84 9.599322 CATTCCTATTTTTGCGTATCTATTCAC 57.401 33.333 0.00 0.00 0.00 3.18
84 85 9.554395 TCATTCCTATTTTTGCGTATCTATTCA 57.446 29.630 0.00 0.00 0.00 2.57
102 103 9.983024 TCAGTGGGTTTAAATATTTCATTCCTA 57.017 29.630 3.39 0.00 0.00 2.94
103 104 8.893563 TCAGTGGGTTTAAATATTTCATTCCT 57.106 30.769 3.39 0.00 0.00 3.36
104 105 9.533253 CATCAGTGGGTTTAAATATTTCATTCC 57.467 33.333 3.39 4.13 0.00 3.01
108 109 9.527157 TCTTCATCAGTGGGTTTAAATATTTCA 57.473 29.630 3.39 0.00 0.00 2.69
113 114 9.613428 CAGTATCTTCATCAGTGGGTTTAAATA 57.387 33.333 0.00 0.00 0.00 1.40
114 115 8.109634 ACAGTATCTTCATCAGTGGGTTTAAAT 58.890 33.333 0.00 0.00 0.00 1.40
115 116 7.390440 CACAGTATCTTCATCAGTGGGTTTAAA 59.610 37.037 0.00 0.00 0.00 1.52
116 117 6.878923 CACAGTATCTTCATCAGTGGGTTTAA 59.121 38.462 0.00 0.00 0.00 1.52
117 118 6.212589 TCACAGTATCTTCATCAGTGGGTTTA 59.787 38.462 0.00 0.00 0.00 2.01
118 119 5.013079 TCACAGTATCTTCATCAGTGGGTTT 59.987 40.000 0.00 0.00 0.00 3.27
119 120 4.532126 TCACAGTATCTTCATCAGTGGGTT 59.468 41.667 0.00 0.00 0.00 4.11
120 121 4.096681 TCACAGTATCTTCATCAGTGGGT 58.903 43.478 0.00 0.00 0.00 4.51
121 122 4.442612 CCTCACAGTATCTTCATCAGTGGG 60.443 50.000 0.00 0.00 0.00 4.61
122 123 4.161189 ACCTCACAGTATCTTCATCAGTGG 59.839 45.833 0.00 0.00 0.00 4.00
123 124 5.336150 ACCTCACAGTATCTTCATCAGTG 57.664 43.478 0.00 0.00 0.00 3.66
124 125 6.365970 AAACCTCACAGTATCTTCATCAGT 57.634 37.500 0.00 0.00 0.00 3.41
125 126 7.440556 CCATAAACCTCACAGTATCTTCATCAG 59.559 40.741 0.00 0.00 0.00 2.90
126 127 7.275183 CCATAAACCTCACAGTATCTTCATCA 58.725 38.462 0.00 0.00 0.00 3.07
127 128 6.203723 GCCATAAACCTCACAGTATCTTCATC 59.796 42.308 0.00 0.00 0.00 2.92
128 129 6.058183 GCCATAAACCTCACAGTATCTTCAT 58.942 40.000 0.00 0.00 0.00 2.57
129 130 5.189736 AGCCATAAACCTCACAGTATCTTCA 59.810 40.000 0.00 0.00 0.00 3.02
130 131 5.675538 AGCCATAAACCTCACAGTATCTTC 58.324 41.667 0.00 0.00 0.00 2.87
131 132 5.700402 AGCCATAAACCTCACAGTATCTT 57.300 39.130 0.00 0.00 0.00 2.40
132 133 7.179338 CCTATAGCCATAAACCTCACAGTATCT 59.821 40.741 0.00 0.00 0.00 1.98
133 134 7.038941 ACCTATAGCCATAAACCTCACAGTATC 60.039 40.741 0.00 0.00 0.00 2.24
134 135 6.787957 ACCTATAGCCATAAACCTCACAGTAT 59.212 38.462 0.00 0.00 0.00 2.12
135 136 6.041637 CACCTATAGCCATAAACCTCACAGTA 59.958 42.308 0.00 0.00 0.00 2.74
136 137 4.969359 ACCTATAGCCATAAACCTCACAGT 59.031 41.667 0.00 0.00 0.00 3.55
137 138 5.070446 TCACCTATAGCCATAAACCTCACAG 59.930 44.000 0.00 0.00 0.00 3.66
138 139 4.966168 TCACCTATAGCCATAAACCTCACA 59.034 41.667 0.00 0.00 0.00 3.58
139 140 5.546621 TCACCTATAGCCATAAACCTCAC 57.453 43.478 0.00 0.00 0.00 3.51
140 141 5.454755 GCTTCACCTATAGCCATAAACCTCA 60.455 44.000 0.00 0.00 0.00 3.86
141 142 4.998033 GCTTCACCTATAGCCATAAACCTC 59.002 45.833 0.00 0.00 0.00 3.85
142 143 4.503296 CGCTTCACCTATAGCCATAAACCT 60.503 45.833 0.00 0.00 33.86 3.50
143 144 3.746492 CGCTTCACCTATAGCCATAAACC 59.254 47.826 0.00 0.00 33.86 3.27
144 145 3.746492 CCGCTTCACCTATAGCCATAAAC 59.254 47.826 0.00 0.00 33.86 2.01
145 146 3.244422 CCCGCTTCACCTATAGCCATAAA 60.244 47.826 0.00 0.00 33.86 1.40
146 147 2.301870 CCCGCTTCACCTATAGCCATAA 59.698 50.000 0.00 0.00 33.86 1.90
147 148 1.899814 CCCGCTTCACCTATAGCCATA 59.100 52.381 0.00 0.00 33.86 2.74
148 149 0.687354 CCCGCTTCACCTATAGCCAT 59.313 55.000 0.00 0.00 33.86 4.40
149 150 2.040009 GCCCGCTTCACCTATAGCCA 62.040 60.000 0.00 0.00 33.86 4.75
150 151 1.301795 GCCCGCTTCACCTATAGCC 60.302 63.158 0.00 0.00 33.86 3.93
151 152 1.664965 CGCCCGCTTCACCTATAGC 60.665 63.158 0.00 0.00 0.00 2.97
152 153 1.006102 CCGCCCGCTTCACCTATAG 60.006 63.158 0.00 0.00 0.00 1.31
153 154 1.332144 AACCGCCCGCTTCACCTATA 61.332 55.000 0.00 0.00 0.00 1.31
154 155 2.666098 AACCGCCCGCTTCACCTAT 61.666 57.895 0.00 0.00 0.00 2.57
155 156 3.315949 AACCGCCCGCTTCACCTA 61.316 61.111 0.00 0.00 0.00 3.08
167 168 1.829533 ATCATCCATGGCCAACCGC 60.830 57.895 10.96 0.00 39.70 5.68
168 169 0.752743 ACATCATCCATGGCCAACCG 60.753 55.000 10.96 0.33 39.70 4.44
169 170 0.748450 CACATCATCCATGGCCAACC 59.252 55.000 10.96 0.00 36.72 3.77
170 171 0.748450 CCACATCATCCATGGCCAAC 59.252 55.000 10.96 0.00 36.72 3.77
171 172 0.335705 ACCACATCATCCATGGCCAA 59.664 50.000 10.96 0.00 36.96 4.52
172 173 0.106569 GACCACATCATCCATGGCCA 60.107 55.000 8.56 8.56 36.96 5.36
173 174 0.825010 GGACCACATCATCCATGGCC 60.825 60.000 6.96 0.00 36.96 5.36
174 175 0.106569 TGGACCACATCATCCATGGC 60.107 55.000 6.96 0.00 40.17 4.40
179 180 7.596494 CATACAATTAATGGACCACATCATCC 58.404 38.462 0.00 0.00 39.40 3.51
180 181 7.086376 GCATACAATTAATGGACCACATCATC 58.914 38.462 0.00 0.00 39.40 2.92
181 182 6.550481 TGCATACAATTAATGGACCACATCAT 59.450 34.615 0.00 0.00 39.40 2.45
182 183 5.890419 TGCATACAATTAATGGACCACATCA 59.110 36.000 0.00 0.00 39.40 3.07
183 184 6.389830 TGCATACAATTAATGGACCACATC 57.610 37.500 0.00 0.00 39.40 3.06
184 185 6.982160 ATGCATACAATTAATGGACCACAT 57.018 33.333 0.00 0.00 43.07 3.21
185 186 6.788598 AATGCATACAATTAATGGACCACA 57.211 33.333 0.00 0.00 0.00 4.17
186 187 9.030301 GTTTAATGCATACAATTAATGGACCAC 57.970 33.333 0.00 0.00 0.00 4.16
187 188 8.753133 TGTTTAATGCATACAATTAATGGACCA 58.247 29.630 0.00 0.00 0.00 4.02
188 189 9.762933 ATGTTTAATGCATACAATTAATGGACC 57.237 29.630 0.00 0.00 0.00 4.46
190 191 9.761504 CCATGTTTAATGCATACAATTAATGGA 57.238 29.630 0.00 0.59 0.00 3.41
191 192 9.761504 TCCATGTTTAATGCATACAATTAATGG 57.238 29.630 0.00 5.54 0.00 3.16
196 197 9.369904 GTTCTTCCATGTTTAATGCATACAATT 57.630 29.630 0.00 0.00 0.00 2.32
197 198 8.530311 TGTTCTTCCATGTTTAATGCATACAAT 58.470 29.630 0.00 0.00 0.00 2.71
198 199 7.890515 TGTTCTTCCATGTTTAATGCATACAA 58.109 30.769 0.00 0.00 0.00 2.41
199 200 7.459795 TGTTCTTCCATGTTTAATGCATACA 57.540 32.000 0.00 0.48 0.00 2.29
200 201 8.931385 ATTGTTCTTCCATGTTTAATGCATAC 57.069 30.769 0.00 0.00 0.00 2.39
201 202 8.196771 GGATTGTTCTTCCATGTTTAATGCATA 58.803 33.333 0.00 0.00 33.21 3.14
202 203 7.043565 GGATTGTTCTTCCATGTTTAATGCAT 58.956 34.615 0.00 0.00 33.21 3.96
203 204 6.211184 AGGATTGTTCTTCCATGTTTAATGCA 59.789 34.615 0.00 0.00 35.59 3.96
204 205 6.633856 AGGATTGTTCTTCCATGTTTAATGC 58.366 36.000 0.00 0.00 35.59 3.56
205 206 8.739039 TGTAGGATTGTTCTTCCATGTTTAATG 58.261 33.333 0.00 0.00 35.59 1.90
206 207 8.877864 TGTAGGATTGTTCTTCCATGTTTAAT 57.122 30.769 0.00 0.00 35.59 1.40
207 208 8.877864 ATGTAGGATTGTTCTTCCATGTTTAA 57.122 30.769 0.00 0.00 35.59 1.52
208 209 8.106462 TGATGTAGGATTGTTCTTCCATGTTTA 58.894 33.333 0.00 0.00 35.59 2.01
209 210 6.947733 TGATGTAGGATTGTTCTTCCATGTTT 59.052 34.615 0.00 0.00 35.59 2.83
210 211 6.484288 TGATGTAGGATTGTTCTTCCATGTT 58.516 36.000 0.00 0.00 35.59 2.71
211 212 6.065976 TGATGTAGGATTGTTCTTCCATGT 57.934 37.500 0.00 0.00 35.59 3.21
212 213 8.859236 ATATGATGTAGGATTGTTCTTCCATG 57.141 34.615 0.00 0.00 35.59 3.66
220 221 9.896645 GTCCATGATATATGATGTAGGATTGTT 57.103 33.333 10.72 0.00 0.00 2.83
221 222 9.050154 TGTCCATGATATATGATGTAGGATTGT 57.950 33.333 10.72 0.00 0.00 2.71
222 223 9.895138 TTGTCCATGATATATGATGTAGGATTG 57.105 33.333 10.72 0.00 0.00 2.67
234 235 9.599866 CGGTTGTATGTATTGTCCATGATATAT 57.400 33.333 0.00 0.00 0.00 0.86
235 236 8.590204 ACGGTTGTATGTATTGTCCATGATATA 58.410 33.333 0.00 0.00 0.00 0.86
236 237 7.387673 CACGGTTGTATGTATTGTCCATGATAT 59.612 37.037 0.00 0.00 0.00 1.63
237 238 6.704050 CACGGTTGTATGTATTGTCCATGATA 59.296 38.462 0.00 0.00 0.00 2.15
238 239 5.527214 CACGGTTGTATGTATTGTCCATGAT 59.473 40.000 0.00 0.00 0.00 2.45
239 240 4.873259 CACGGTTGTATGTATTGTCCATGA 59.127 41.667 0.00 0.00 0.00 3.07
240 241 4.634004 ACACGGTTGTATGTATTGTCCATG 59.366 41.667 0.00 0.00 32.60 3.66
241 242 4.634004 CACACGGTTGTATGTATTGTCCAT 59.366 41.667 0.00 0.00 33.30 3.41
242 243 3.997681 CACACGGTTGTATGTATTGTCCA 59.002 43.478 0.00 0.00 33.30 4.02
243 244 4.247258 TCACACGGTTGTATGTATTGTCC 58.753 43.478 0.00 0.00 33.30 4.02
244 245 5.579119 TCATCACACGGTTGTATGTATTGTC 59.421 40.000 0.00 0.00 33.30 3.18
245 246 5.483811 TCATCACACGGTTGTATGTATTGT 58.516 37.500 0.00 0.00 33.30 2.71
246 247 6.479990 AGATCATCACACGGTTGTATGTATTG 59.520 38.462 0.00 0.00 33.30 1.90
247 248 6.582636 AGATCATCACACGGTTGTATGTATT 58.417 36.000 0.00 0.00 33.30 1.89
248 249 6.161855 AGATCATCACACGGTTGTATGTAT 57.838 37.500 0.00 0.00 33.30 2.29
249 250 5.592104 AGATCATCACACGGTTGTATGTA 57.408 39.130 0.00 0.00 33.30 2.29
250 251 4.471904 AGATCATCACACGGTTGTATGT 57.528 40.909 0.00 0.00 33.30 2.29
251 252 5.234329 GGTTAGATCATCACACGGTTGTATG 59.766 44.000 0.00 0.00 33.30 2.39
252 253 5.105106 TGGTTAGATCATCACACGGTTGTAT 60.105 40.000 0.00 0.00 33.30 2.29
253 254 4.221041 TGGTTAGATCATCACACGGTTGTA 59.779 41.667 0.00 0.00 33.30 2.41
254 255 3.007506 TGGTTAGATCATCACACGGTTGT 59.992 43.478 0.00 0.00 35.84 3.32
255 256 3.595173 TGGTTAGATCATCACACGGTTG 58.405 45.455 0.00 0.00 0.00 3.77
256 257 3.973206 TGGTTAGATCATCACACGGTT 57.027 42.857 0.00 0.00 0.00 4.44
257 258 3.450817 TGATGGTTAGATCATCACACGGT 59.549 43.478 0.00 0.00 43.98 4.83
258 259 4.058721 TGATGGTTAGATCATCACACGG 57.941 45.455 0.00 0.00 43.98 4.94
264 265 6.347240 GCTTCGACAATGATGGTTAGATCATC 60.347 42.308 0.00 0.00 41.35 2.92
265 266 5.468072 GCTTCGACAATGATGGTTAGATCAT 59.532 40.000 0.00 0.00 43.58 2.45
266 267 4.811024 GCTTCGACAATGATGGTTAGATCA 59.189 41.667 0.00 0.00 36.78 2.92
267 268 4.811024 TGCTTCGACAATGATGGTTAGATC 59.189 41.667 0.00 0.00 0.00 2.75
268 269 4.769688 TGCTTCGACAATGATGGTTAGAT 58.230 39.130 0.00 0.00 0.00 1.98
269 270 4.183865 CTGCTTCGACAATGATGGTTAGA 58.816 43.478 0.00 0.00 0.00 2.10
270 271 3.935203 ACTGCTTCGACAATGATGGTTAG 59.065 43.478 0.00 0.00 0.00 2.34
271 272 3.937814 ACTGCTTCGACAATGATGGTTA 58.062 40.909 0.00 0.00 0.00 2.85
272 273 2.783135 ACTGCTTCGACAATGATGGTT 58.217 42.857 0.00 0.00 0.00 3.67
273 274 2.479566 ACTGCTTCGACAATGATGGT 57.520 45.000 0.00 0.00 0.00 3.55
274 275 2.159476 CCAACTGCTTCGACAATGATGG 60.159 50.000 0.00 0.00 0.00 3.51
275 276 2.743664 TCCAACTGCTTCGACAATGATG 59.256 45.455 0.00 0.00 0.00 3.07
276 277 3.057969 TCCAACTGCTTCGACAATGAT 57.942 42.857 0.00 0.00 0.00 2.45
277 278 2.542020 TCCAACTGCTTCGACAATGA 57.458 45.000 0.00 0.00 0.00 2.57
278 279 3.005554 AGATCCAACTGCTTCGACAATG 58.994 45.455 0.00 0.00 0.00 2.82
279 280 3.005554 CAGATCCAACTGCTTCGACAAT 58.994 45.455 0.00 0.00 0.00 2.71
280 281 2.224281 ACAGATCCAACTGCTTCGACAA 60.224 45.455 0.00 0.00 41.06 3.18
281 282 1.344438 ACAGATCCAACTGCTTCGACA 59.656 47.619 0.00 0.00 41.06 4.35
282 283 1.728971 CACAGATCCAACTGCTTCGAC 59.271 52.381 0.00 0.00 41.06 4.20
283 284 1.338105 CCACAGATCCAACTGCTTCGA 60.338 52.381 0.00 0.00 41.06 3.71
284 285 1.081892 CCACAGATCCAACTGCTTCG 58.918 55.000 0.00 0.00 41.06 3.79
285 286 2.479566 TCCACAGATCCAACTGCTTC 57.520 50.000 0.00 0.00 41.06 3.86
286 287 3.446442 AATCCACAGATCCAACTGCTT 57.554 42.857 0.00 0.00 41.06 3.91
287 288 3.087031 CAAATCCACAGATCCAACTGCT 58.913 45.455 0.00 0.00 41.06 4.24
288 289 2.165030 CCAAATCCACAGATCCAACTGC 59.835 50.000 0.00 0.00 41.06 4.40
289 290 2.165030 GCCAAATCCACAGATCCAACTG 59.835 50.000 0.00 0.00 42.78 3.16
290 291 2.225091 TGCCAAATCCACAGATCCAACT 60.225 45.455 0.00 0.00 0.00 3.16
291 292 2.170166 TGCCAAATCCACAGATCCAAC 58.830 47.619 0.00 0.00 0.00 3.77
292 293 2.601240 TGCCAAATCCACAGATCCAA 57.399 45.000 0.00 0.00 0.00 3.53
293 294 2.832643 ATGCCAAATCCACAGATCCA 57.167 45.000 0.00 0.00 0.00 3.41
294 295 3.788937 CAAATGCCAAATCCACAGATCC 58.211 45.455 0.00 0.00 0.00 3.36
295 296 3.192466 GCAAATGCCAAATCCACAGATC 58.808 45.455 0.00 0.00 34.31 2.75
296 297 2.568062 TGCAAATGCCAAATCCACAGAT 59.432 40.909 2.46 0.00 41.18 2.90
297 298 1.969208 TGCAAATGCCAAATCCACAGA 59.031 42.857 2.46 0.00 41.18 3.41
298 299 2.070783 GTGCAAATGCCAAATCCACAG 58.929 47.619 2.46 0.00 41.18 3.66
299 300 1.693062 AGTGCAAATGCCAAATCCACA 59.307 42.857 2.46 0.00 41.18 4.17
300 301 2.460757 AGTGCAAATGCCAAATCCAC 57.539 45.000 2.46 0.00 41.18 4.02
301 302 3.139850 CAAAGTGCAAATGCCAAATCCA 58.860 40.909 2.46 0.00 41.18 3.41
302 303 3.401182 TCAAAGTGCAAATGCCAAATCC 58.599 40.909 2.46 0.00 41.18 3.01
303 304 5.421212 TTTCAAAGTGCAAATGCCAAATC 57.579 34.783 2.46 0.00 41.18 2.17
304 305 5.764131 CATTTCAAAGTGCAAATGCCAAAT 58.236 33.333 2.46 0.00 41.18 2.32
305 306 5.171147 CATTTCAAAGTGCAAATGCCAAA 57.829 34.783 2.46 0.00 41.18 3.28
306 307 4.815040 CATTTCAAAGTGCAAATGCCAA 57.185 36.364 2.46 0.00 41.18 4.52
310 311 4.059511 TCAGGCATTTCAAAGTGCAAATG 58.940 39.130 11.60 2.77 43.00 2.32
311 312 4.060205 GTCAGGCATTTCAAAGTGCAAAT 58.940 39.130 11.60 0.00 43.00 2.32
312 313 3.132646 AGTCAGGCATTTCAAAGTGCAAA 59.867 39.130 11.60 0.00 43.00 3.68
313 314 2.694628 AGTCAGGCATTTCAAAGTGCAA 59.305 40.909 11.60 0.00 43.00 4.08
314 315 2.034939 CAGTCAGGCATTTCAAAGTGCA 59.965 45.455 11.60 0.00 43.00 4.57
315 316 2.035066 ACAGTCAGGCATTTCAAAGTGC 59.965 45.455 1.93 1.93 40.55 4.40
316 317 3.316029 TGACAGTCAGGCATTTCAAAGTG 59.684 43.478 0.00 0.00 0.00 3.16
317 318 3.316308 GTGACAGTCAGGCATTTCAAAGT 59.684 43.478 2.53 0.00 37.77 2.66
318 319 3.316029 TGTGACAGTCAGGCATTTCAAAG 59.684 43.478 2.53 0.00 37.77 2.77
319 320 3.286353 TGTGACAGTCAGGCATTTCAAA 58.714 40.909 2.53 0.00 37.77 2.69
320 321 2.929641 TGTGACAGTCAGGCATTTCAA 58.070 42.857 2.53 0.00 37.77 2.69
321 322 2.636647 TGTGACAGTCAGGCATTTCA 57.363 45.000 2.53 0.00 37.77 2.69
322 323 3.829948 CATTGTGACAGTCAGGCATTTC 58.170 45.455 2.53 0.00 37.77 2.17
323 324 2.029649 GCATTGTGACAGTCAGGCATTT 60.030 45.455 2.53 0.00 37.77 2.32
324 325 1.542915 GCATTGTGACAGTCAGGCATT 59.457 47.619 2.53 0.00 37.77 3.56
325 326 1.171308 GCATTGTGACAGTCAGGCAT 58.829 50.000 2.53 0.00 37.77 4.40
326 327 0.890542 GGCATTGTGACAGTCAGGCA 60.891 55.000 2.53 0.00 0.00 4.75
327 328 1.589716 GGGCATTGTGACAGTCAGGC 61.590 60.000 2.53 4.48 0.00 4.85
328 329 0.037303 AGGGCATTGTGACAGTCAGG 59.963 55.000 2.53 0.00 0.00 3.86
329 330 1.271001 TGAGGGCATTGTGACAGTCAG 60.271 52.381 2.53 0.00 0.00 3.51
330 331 0.764271 TGAGGGCATTGTGACAGTCA 59.236 50.000 0.00 0.00 0.00 3.41
331 332 2.119801 ATGAGGGCATTGTGACAGTC 57.880 50.000 0.00 0.00 0.00 3.51
332 333 2.592102 AATGAGGGCATTGTGACAGT 57.408 45.000 0.00 0.00 42.91 3.55
340 341 1.754234 GCGGGACAATGAGGGCATT 60.754 57.895 0.00 0.00 45.33 3.56
341 342 2.124151 GCGGGACAATGAGGGCAT 60.124 61.111 0.00 0.00 35.92 4.40
342 343 4.776322 CGCGGGACAATGAGGGCA 62.776 66.667 0.00 0.00 0.00 5.36
344 345 3.781307 TCCGCGGGACAATGAGGG 61.781 66.667 27.83 0.00 0.00 4.30
353 354 0.681887 TGTAAGAGATGTCCGCGGGA 60.682 55.000 27.83 13.31 0.00 5.14
354 355 0.389391 ATGTAAGAGATGTCCGCGGG 59.611 55.000 27.83 6.80 0.00 6.13
355 356 2.225068 AATGTAAGAGATGTCCGCGG 57.775 50.000 22.12 22.12 0.00 6.46
356 357 5.712217 TTTAAATGTAAGAGATGTCCGCG 57.288 39.130 0.00 0.00 0.00 6.46
357 358 6.487103 CCTTTTAAATGTAAGAGATGTCCGC 58.513 40.000 0.00 0.00 0.00 5.54
358 359 6.316390 AGCCTTTTAAATGTAAGAGATGTCCG 59.684 38.462 0.00 0.00 0.00 4.79
359 360 7.631717 AGCCTTTTAAATGTAAGAGATGTCC 57.368 36.000 0.00 0.00 0.00 4.02
360 361 7.486232 GCAAGCCTTTTAAATGTAAGAGATGTC 59.514 37.037 0.00 0.00 0.00 3.06
361 362 7.177392 AGCAAGCCTTTTAAATGTAAGAGATGT 59.823 33.333 0.00 0.00 0.00 3.06
362 363 7.542025 AGCAAGCCTTTTAAATGTAAGAGATG 58.458 34.615 0.00 0.00 0.00 2.90
363 364 7.709149 AGCAAGCCTTTTAAATGTAAGAGAT 57.291 32.000 0.00 0.00 0.00 2.75
364 365 7.883311 AGTAGCAAGCCTTTTAAATGTAAGAGA 59.117 33.333 0.00 0.00 0.00 3.10
365 366 7.965107 CAGTAGCAAGCCTTTTAAATGTAAGAG 59.035 37.037 0.00 0.00 0.00 2.85
366 367 7.094377 CCAGTAGCAAGCCTTTTAAATGTAAGA 60.094 37.037 0.00 0.00 0.00 2.10
367 368 7.029563 CCAGTAGCAAGCCTTTTAAATGTAAG 58.970 38.462 0.00 0.00 0.00 2.34
368 369 6.492087 ACCAGTAGCAAGCCTTTTAAATGTAA 59.508 34.615 0.00 0.00 0.00 2.41
369 370 6.007703 ACCAGTAGCAAGCCTTTTAAATGTA 58.992 36.000 0.00 0.00 0.00 2.29
370 371 4.832823 ACCAGTAGCAAGCCTTTTAAATGT 59.167 37.500 0.00 0.00 0.00 2.71
371 372 5.048083 TGACCAGTAGCAAGCCTTTTAAATG 60.048 40.000 0.00 0.00 0.00 2.32
372 373 5.076873 TGACCAGTAGCAAGCCTTTTAAAT 58.923 37.500 0.00 0.00 0.00 1.40
373 374 4.465886 TGACCAGTAGCAAGCCTTTTAAA 58.534 39.130 0.00 0.00 0.00 1.52
374 375 4.093472 TGACCAGTAGCAAGCCTTTTAA 57.907 40.909 0.00 0.00 0.00 1.52
375 376 3.780804 TGACCAGTAGCAAGCCTTTTA 57.219 42.857 0.00 0.00 0.00 1.52
376 377 2.656947 TGACCAGTAGCAAGCCTTTT 57.343 45.000 0.00 0.00 0.00 2.27
377 378 2.508526 CTTGACCAGTAGCAAGCCTTT 58.491 47.619 0.00 0.00 35.59 3.11
378 379 2.191128 CTTGACCAGTAGCAAGCCTT 57.809 50.000 0.00 0.00 35.59 4.35
379 380 3.944476 CTTGACCAGTAGCAAGCCT 57.056 52.632 0.00 0.00 35.59 4.58
382 383 2.481952 GTGAAGCTTGACCAGTAGCAAG 59.518 50.000 2.10 0.00 43.26 4.01
383 384 2.158827 TGTGAAGCTTGACCAGTAGCAA 60.159 45.455 13.73 0.00 39.85 3.91
384 385 1.416030 TGTGAAGCTTGACCAGTAGCA 59.584 47.619 13.73 0.00 39.85 3.49
385 386 2.169832 TGTGAAGCTTGACCAGTAGC 57.830 50.000 13.73 0.00 37.66 3.58
386 387 3.120060 GCAATGTGAAGCTTGACCAGTAG 60.120 47.826 13.73 0.77 0.00 2.57
387 388 2.813754 GCAATGTGAAGCTTGACCAGTA 59.186 45.455 13.73 0.00 0.00 2.74
388 389 1.610522 GCAATGTGAAGCTTGACCAGT 59.389 47.619 13.73 0.00 0.00 4.00
389 390 1.610038 TGCAATGTGAAGCTTGACCAG 59.390 47.619 13.73 4.55 0.00 4.00
390 391 1.689984 TGCAATGTGAAGCTTGACCA 58.310 45.000 13.73 1.15 0.00 4.02
391 392 2.035066 AGTTGCAATGTGAAGCTTGACC 59.965 45.455 13.73 0.00 0.00 4.02
392 393 3.360249 AGTTGCAATGTGAAGCTTGAC 57.640 42.857 9.33 9.33 0.00 3.18
393 394 4.520111 ACATAGTTGCAATGTGAAGCTTGA 59.480 37.500 2.10 0.00 36.24 3.02
394 395 4.801891 ACATAGTTGCAATGTGAAGCTTG 58.198 39.130 2.10 0.00 36.24 4.01
395 396 5.221303 ACAACATAGTTGCAATGTGAAGCTT 60.221 36.000 0.59 0.00 37.62 3.74
396 397 4.279169 ACAACATAGTTGCAATGTGAAGCT 59.721 37.500 0.59 0.00 37.62 3.74
397 398 4.549458 ACAACATAGTTGCAATGTGAAGC 58.451 39.130 0.59 0.00 37.62 3.86
398 399 5.761003 TGACAACATAGTTGCAATGTGAAG 58.239 37.500 0.59 0.39 37.62 3.02
399 400 5.761003 CTGACAACATAGTTGCAATGTGAA 58.239 37.500 0.59 0.00 37.62 3.18
400 401 4.320421 GCTGACAACATAGTTGCAATGTGA 60.320 41.667 0.59 0.00 37.62 3.58
401 402 3.916172 GCTGACAACATAGTTGCAATGTG 59.084 43.478 0.59 4.77 37.62 3.21
402 403 3.365264 CGCTGACAACATAGTTGCAATGT 60.365 43.478 0.59 0.75 39.22 2.71
403 404 3.120234 TCGCTGACAACATAGTTGCAATG 60.120 43.478 0.59 0.00 0.00 2.82
404 405 3.073678 TCGCTGACAACATAGTTGCAAT 58.926 40.909 0.59 0.00 0.00 3.56
405 406 2.223144 GTCGCTGACAACATAGTTGCAA 59.777 45.455 9.60 0.00 32.09 4.08
406 407 1.798223 GTCGCTGACAACATAGTTGCA 59.202 47.619 9.60 7.94 32.09 4.08
407 408 1.128692 GGTCGCTGACAACATAGTTGC 59.871 52.381 9.60 4.11 33.68 4.17
408 409 2.157668 GTGGTCGCTGACAACATAGTTG 59.842 50.000 8.24 8.24 36.57 3.16
409 410 2.413837 GTGGTCGCTGACAACATAGTT 58.586 47.619 10.21 0.00 36.57 2.24
410 411 1.668919 CGTGGTCGCTGACAACATAGT 60.669 52.381 13.96 0.00 36.36 2.12
411 412 0.992072 CGTGGTCGCTGACAACATAG 59.008 55.000 13.96 0.00 36.36 2.23
412 413 0.599060 TCGTGGTCGCTGACAACATA 59.401 50.000 13.96 2.22 36.36 2.29
413 414 0.249699 TTCGTGGTCGCTGACAACAT 60.250 50.000 13.96 0.00 36.36 2.71
414 415 0.249699 ATTCGTGGTCGCTGACAACA 60.250 50.000 13.96 1.85 36.36 3.33
415 416 1.389106 GTATTCGTGGTCGCTGACAAC 59.611 52.381 10.14 8.17 33.48 3.32
416 417 1.000052 TGTATTCGTGGTCGCTGACAA 60.000 47.619 10.14 0.00 33.68 3.18
417 418 0.599060 TGTATTCGTGGTCGCTGACA 59.401 50.000 10.14 0.00 33.68 3.58
418 419 1.389106 GTTGTATTCGTGGTCGCTGAC 59.611 52.381 0.79 0.79 36.96 3.51
419 420 1.000052 TGTTGTATTCGTGGTCGCTGA 60.000 47.619 0.00 0.00 36.96 4.26
420 421 1.424403 TGTTGTATTCGTGGTCGCTG 58.576 50.000 0.00 0.00 36.96 5.18
421 422 2.380084 ATGTTGTATTCGTGGTCGCT 57.620 45.000 0.00 0.00 36.96 4.93
422 423 3.242248 GTCTATGTTGTATTCGTGGTCGC 59.758 47.826 0.00 0.00 36.96 5.19
423 424 4.669318 AGTCTATGTTGTATTCGTGGTCG 58.331 43.478 0.00 0.00 38.55 4.79
424 425 6.793349 AGTAGTCTATGTTGTATTCGTGGTC 58.207 40.000 0.00 0.00 0.00 4.02
425 426 6.770746 AGTAGTCTATGTTGTATTCGTGGT 57.229 37.500 0.00 0.00 0.00 4.16
426 427 6.856938 GCTAGTAGTCTATGTTGTATTCGTGG 59.143 42.308 0.00 0.00 0.00 4.94
427 428 7.640852 AGCTAGTAGTCTATGTTGTATTCGTG 58.359 38.462 0.00 0.00 0.00 4.35
428 429 7.804843 AGCTAGTAGTCTATGTTGTATTCGT 57.195 36.000 0.00 0.00 0.00 3.85
429 430 8.343366 TCAAGCTAGTAGTCTATGTTGTATTCG 58.657 37.037 0.00 0.00 0.00 3.34
432 433 9.409918 TCTTCAAGCTAGTAGTCTATGTTGTAT 57.590 33.333 0.00 0.00 0.00 2.29
433 434 8.803397 TCTTCAAGCTAGTAGTCTATGTTGTA 57.197 34.615 0.00 0.00 0.00 2.41
434 435 7.704578 TCTTCAAGCTAGTAGTCTATGTTGT 57.295 36.000 0.00 0.00 0.00 3.32
435 436 7.651304 CCATCTTCAAGCTAGTAGTCTATGTTG 59.349 40.741 0.00 0.00 0.00 3.33
436 437 7.685641 GCCATCTTCAAGCTAGTAGTCTATGTT 60.686 40.741 0.00 0.00 0.00 2.71
437 438 6.239176 GCCATCTTCAAGCTAGTAGTCTATGT 60.239 42.308 0.00 0.00 0.00 2.29
438 439 6.155827 GCCATCTTCAAGCTAGTAGTCTATG 58.844 44.000 0.00 0.00 0.00 2.23
439 440 5.835819 TGCCATCTTCAAGCTAGTAGTCTAT 59.164 40.000 0.00 0.00 0.00 1.98
440 441 5.201243 TGCCATCTTCAAGCTAGTAGTCTA 58.799 41.667 0.00 0.00 0.00 2.59
441 442 4.026744 TGCCATCTTCAAGCTAGTAGTCT 58.973 43.478 0.00 0.00 0.00 3.24
442 443 4.392921 TGCCATCTTCAAGCTAGTAGTC 57.607 45.455 0.00 0.00 0.00 2.59
443 444 4.653341 AGATGCCATCTTCAAGCTAGTAGT 59.347 41.667 0.08 0.00 35.76 2.73
444 445 5.212532 AGATGCCATCTTCAAGCTAGTAG 57.787 43.478 0.08 0.00 35.76 2.57
445 446 6.924913 ATAGATGCCATCTTCAAGCTAGTA 57.075 37.500 13.32 0.00 40.76 1.82
446 447 5.822132 ATAGATGCCATCTTCAAGCTAGT 57.178 39.130 13.32 0.00 40.76 2.57
447 448 6.465948 AGAATAGATGCCATCTTCAAGCTAG 58.534 40.000 13.32 0.00 40.76 3.42
448 449 6.430962 AGAATAGATGCCATCTTCAAGCTA 57.569 37.500 13.32 0.00 40.76 3.32
449 450 5.307544 AGAATAGATGCCATCTTCAAGCT 57.692 39.130 13.32 1.46 40.76 3.74
450 451 6.388435 AAAGAATAGATGCCATCTTCAAGC 57.612 37.500 13.32 0.00 40.76 4.01
461 463 7.651027 AATATGCCCCATAAAGAATAGATGC 57.349 36.000 0.00 0.00 29.74 3.91
473 475 5.122707 TGTCTTCACAAATATGCCCCATA 57.877 39.130 0.00 0.00 0.00 2.74
477 479 5.964758 TGAATTGTCTTCACAAATATGCCC 58.035 37.500 0.00 0.00 45.78 5.36
483 485 8.279970 TCGGATATTGAATTGTCTTCACAAAT 57.720 30.769 0.00 0.00 45.78 2.32
502 504 1.913419 AGAACCCTTGCCTTTCGGATA 59.087 47.619 0.00 0.00 0.00 2.59
507 509 1.995376 TGGAAGAACCCTTGCCTTTC 58.005 50.000 0.00 0.00 39.64 2.62
538 540 2.951642 CCGGCCTTGTTCAATATCACAT 59.048 45.455 0.00 0.00 0.00 3.21
701 703 1.673760 CACTTTGCACATTCGGTTCG 58.326 50.000 0.00 0.00 0.00 3.95
851 853 2.032054 CACACATATGCAACGGGATGAC 59.968 50.000 1.58 0.00 0.00 3.06
892 894 5.721960 TGAGGAGTTAAGAGGATTGCTTAGT 59.278 40.000 0.00 0.00 0.00 2.24
1218 1220 1.300931 GCAGTCGTGGAAGTGCAGA 60.301 57.895 0.00 0.00 43.64 4.26
1386 1388 4.664677 GCGCAGGAGACGGTGTGT 62.665 66.667 0.30 0.00 38.36 3.72
1462 1464 6.262049 TCACATTGTGTTGCTATTAGTGTGTT 59.738 34.615 16.06 0.00 36.66 3.32
1773 1780 1.467883 CCACATGTTACTTGCATGCGG 60.468 52.381 14.09 10.98 45.40 5.69
1774 1781 1.199789 ACCACATGTTACTTGCATGCG 59.800 47.619 14.09 1.59 45.40 4.73
1780 1787 5.369685 TTGCATACACCACATGTTACTTG 57.630 39.130 0.00 0.00 43.19 3.16
1799 1806 3.372822 CCTGGATTGTTCATTGCATTTGC 59.627 43.478 0.00 0.00 42.50 3.68
1800 1807 4.823157 TCCTGGATTGTTCATTGCATTTG 58.177 39.130 0.00 0.00 0.00 2.32
1801 1808 4.622220 GCTCCTGGATTGTTCATTGCATTT 60.622 41.667 0.00 0.00 0.00 2.32
1802 1809 3.118884 GCTCCTGGATTGTTCATTGCATT 60.119 43.478 0.00 0.00 0.00 3.56
1803 1810 2.429610 GCTCCTGGATTGTTCATTGCAT 59.570 45.455 0.00 0.00 0.00 3.96
1804 1811 1.820519 GCTCCTGGATTGTTCATTGCA 59.179 47.619 0.00 0.00 0.00 4.08
2014 2021 3.704566 TGGCGAGGATGTTCTTGTAGTAT 59.295 43.478 0.00 0.00 0.00 2.12
2491 2667 7.978925 AGGGAGTATATCTTAAAACAGATGGG 58.021 38.462 0.00 0.00 35.08 4.00
2519 2696 9.378551 ACACTTCGCTGTCATATAATTAGAAAA 57.621 29.630 0.00 0.00 0.00 2.29
2536 2713 2.538449 CGTTTTCACTACACACTTCGCT 59.462 45.455 0.00 0.00 0.00 4.93
2544 2721 3.427528 TCGAATCAGCGTTTTCACTACAC 59.572 43.478 0.00 0.00 0.00 2.90
2546 2723 4.326278 TCATCGAATCAGCGTTTTCACTAC 59.674 41.667 0.00 0.00 0.00 2.73
2548 2725 3.325870 TCATCGAATCAGCGTTTTCACT 58.674 40.909 0.00 0.00 0.00 3.41
2613 3685 1.145598 CCACATCTCATCTGCGCCT 59.854 57.895 4.18 0.00 0.00 5.52
2663 3735 6.676632 CCATGGGTAAGACAGGGGATTATATA 59.323 42.308 2.85 0.00 36.21 0.86
2670 3742 3.021356 CCATGGGTAAGACAGGGGA 57.979 57.895 2.85 0.00 36.21 4.81
2683 3757 6.718294 GGTAGTATTATTTCCTACCCCATGG 58.282 44.000 4.14 4.14 43.19 3.66
2699 3773 4.230745 AGGCGAAATTGTGGGTAGTATT 57.769 40.909 0.00 0.00 0.00 1.89
2700 3774 3.926058 AGGCGAAATTGTGGGTAGTAT 57.074 42.857 0.00 0.00 0.00 2.12
2701 3775 3.706600 AAGGCGAAATTGTGGGTAGTA 57.293 42.857 0.00 0.00 0.00 1.82
2702 3776 2.579410 AAGGCGAAATTGTGGGTAGT 57.421 45.000 0.00 0.00 0.00 2.73
2705 3779 2.291282 TGGATAAGGCGAAATTGTGGGT 60.291 45.455 0.00 0.00 0.00 4.51
2835 3921 1.226717 GCTCCGTCGTCTGTCATCC 60.227 63.158 0.00 0.00 0.00 3.51
2838 3924 3.733960 CGGCTCCGTCGTCTGTCA 61.734 66.667 0.00 0.00 34.35 3.58
2861 3947 6.479972 AATATTCTGAAGGTCATCACGGTA 57.520 37.500 0.00 0.00 0.00 4.02
2908 4427 2.857186 AACAAAATTCCACCATGGCC 57.143 45.000 13.04 0.00 37.47 5.36
2954 4473 0.387622 CTGGAGCAAACAACATGCCG 60.388 55.000 0.00 0.00 44.91 5.69
2996 4515 9.590451 CAGTACAAATATTCAGGCAATGATTTT 57.410 29.630 0.00 0.00 37.89 1.82
3007 4526 7.840342 AGTCAGCTTCAGTACAAATATTCAG 57.160 36.000 0.00 0.00 0.00 3.02
3017 4536 3.728845 TCCAACAAGTCAGCTTCAGTAC 58.271 45.455 0.00 0.00 31.49 2.73
3018 4537 4.318332 CATCCAACAAGTCAGCTTCAGTA 58.682 43.478 0.00 0.00 31.49 2.74
3019 4538 3.144506 CATCCAACAAGTCAGCTTCAGT 58.855 45.455 0.00 0.00 31.49 3.41
3020 4539 2.095364 GCATCCAACAAGTCAGCTTCAG 60.095 50.000 0.00 0.00 31.49 3.02
3021 4540 1.881973 GCATCCAACAAGTCAGCTTCA 59.118 47.619 0.00 0.00 31.49 3.02
3022 4541 1.881973 TGCATCCAACAAGTCAGCTTC 59.118 47.619 0.00 0.00 31.49 3.86
3023 4542 1.985473 TGCATCCAACAAGTCAGCTT 58.015 45.000 0.00 0.00 34.82 3.74
3024 4543 2.211250 ATGCATCCAACAAGTCAGCT 57.789 45.000 0.00 0.00 0.00 4.24
3025 4544 3.308438 AAATGCATCCAACAAGTCAGC 57.692 42.857 0.00 0.00 0.00 4.26
3026 4545 6.258230 TCTAAAATGCATCCAACAAGTCAG 57.742 37.500 0.00 0.00 0.00 3.51
3027 4546 6.433716 TCATCTAAAATGCATCCAACAAGTCA 59.566 34.615 0.00 0.00 0.00 3.41
3028 4547 6.749118 GTCATCTAAAATGCATCCAACAAGTC 59.251 38.462 0.00 0.00 0.00 3.01
3029 4548 6.350445 GGTCATCTAAAATGCATCCAACAAGT 60.350 38.462 0.00 0.00 0.00 3.16
3030 4549 6.038356 GGTCATCTAAAATGCATCCAACAAG 58.962 40.000 0.00 0.00 0.00 3.16
3031 4550 5.716228 AGGTCATCTAAAATGCATCCAACAA 59.284 36.000 0.00 0.00 0.00 2.83
3032 4551 5.263599 AGGTCATCTAAAATGCATCCAACA 58.736 37.500 0.00 0.00 0.00 3.33
3033 4552 5.841957 AGGTCATCTAAAATGCATCCAAC 57.158 39.130 0.00 0.00 0.00 3.77
3034 4553 5.716228 ACAAGGTCATCTAAAATGCATCCAA 59.284 36.000 0.00 0.00 0.00 3.53
3035 4554 5.263599 ACAAGGTCATCTAAAATGCATCCA 58.736 37.500 0.00 0.00 0.00 3.41
3036 4555 5.841957 ACAAGGTCATCTAAAATGCATCC 57.158 39.130 0.00 0.00 0.00 3.51
3037 4556 8.388484 AGATACAAGGTCATCTAAAATGCATC 57.612 34.615 0.00 0.00 29.66 3.91
3038 4557 8.216423 AGAGATACAAGGTCATCTAAAATGCAT 58.784 33.333 0.00 0.00 31.63 3.96
3039 4558 7.496920 CAGAGATACAAGGTCATCTAAAATGCA 59.503 37.037 0.00 0.00 31.63 3.96
3040 4559 7.712639 TCAGAGATACAAGGTCATCTAAAATGC 59.287 37.037 0.00 0.00 31.63 3.56
3041 4560 9.605275 TTCAGAGATACAAGGTCATCTAAAATG 57.395 33.333 0.00 0.00 31.63 2.32
3052 4571 5.683509 GCACAGCTATTCAGAGATACAAGGT 60.684 44.000 0.00 0.00 0.00 3.50
3070 4589 2.035066 AGAAACAACATTCCTGCACAGC 59.965 45.455 0.00 0.00 0.00 4.40
3076 4595 3.256383 TGCCATGAGAAACAACATTCCTG 59.744 43.478 0.00 0.00 0.00 3.86
3078 4597 3.940209 TGCCATGAGAAACAACATTCC 57.060 42.857 0.00 0.00 0.00 3.01
3124 4643 3.106054 TGTGGCTTATTACCCCGTCTAA 58.894 45.455 0.00 0.00 0.00 2.10
3129 4648 1.675552 CCTTGTGGCTTATTACCCCG 58.324 55.000 0.00 0.00 0.00 5.73
3142 4661 7.039363 TCAGAATTAACCAATTAACCCCTTGTG 60.039 37.037 0.00 0.00 34.44 3.33
3148 4667 8.197439 CAGGAATCAGAATTAACCAATTAACCC 58.803 37.037 0.00 0.00 34.44 4.11
3162 4681 4.702131 GCTACAACCAACAGGAATCAGAAT 59.298 41.667 0.00 0.00 0.00 2.40
3166 4685 3.072330 TCTGCTACAACCAACAGGAATCA 59.928 43.478 0.00 0.00 0.00 2.57
3167 4686 3.674997 TCTGCTACAACCAACAGGAATC 58.325 45.455 0.00 0.00 0.00 2.52
3181 4700 9.661886 TTCAGAGTTGACTAAGCCATCTGCTAC 62.662 44.444 0.00 0.00 40.81 3.58
3183 4702 7.030300 TTCAGAGTTGACTAAGCCATCTGCT 62.030 44.000 0.00 0.00 42.60 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.