Multiple sequence alignment - TraesCS2A01G300400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G300400 chr2A 100.000 4549 0 0 1 4549 516097556 516093008 0.000000e+00 8401.0
1 TraesCS2A01G300400 chr2A 90.442 3055 220 27 505 3502 514859202 514862241 0.000000e+00 3958.0
2 TraesCS2A01G300400 chr2A 90.972 432 31 6 3904 4330 66766593 66766165 3.950000e-160 575.0
3 TraesCS2A01G300400 chr2A 93.981 216 8 5 4336 4549 66765584 66765372 5.680000e-84 322.0
4 TraesCS2A01G300400 chr2A 90.698 43 2 2 76 116 516097385 516097343 6.360000e-04 56.5
5 TraesCS2A01G300400 chr2A 90.698 43 2 2 172 214 516097481 516097441 6.360000e-04 56.5
6 TraesCS2A01G300400 chr2D 93.640 3192 152 23 741 3903 380690683 380687514 0.000000e+00 4723.0
7 TraesCS2A01G300400 chr2D 90.895 3251 229 26 624 3826 379857853 379861084 0.000000e+00 4301.0
8 TraesCS2A01G300400 chr2D 90.286 175 16 1 138 312 380691160 380690987 1.270000e-55 228.0
9 TraesCS2A01G300400 chr2D 81.633 245 19 9 500 743 380690939 380690720 3.620000e-41 180.0
10 TraesCS2A01G300400 chr2B 91.103 2911 198 23 649 3502 451124622 451127528 0.000000e+00 3884.0
11 TraesCS2A01G300400 chr2B 95.870 2252 91 2 984 3234 451925260 451923010 0.000000e+00 3642.0
12 TraesCS2A01G300400 chr2B 92.166 651 44 7 3903 4549 714126076 714125429 0.000000e+00 913.0
13 TraesCS2A01G300400 chr2B 88.485 495 31 4 3354 3823 451905353 451904860 3.950000e-160 575.0
14 TraesCS2A01G300400 chr2B 91.690 361 12 6 2 359 451954792 451954447 6.840000e-133 484.0
15 TraesCS2A01G300400 chr2B 95.565 248 11 0 745 992 451929911 451929664 9.170000e-107 398.0
16 TraesCS2A01G300400 chr2B 94.118 255 11 1 497 751 451930339 451930089 7.140000e-103 385.0
17 TraesCS2A01G300400 chr2B 74.769 864 195 19 2512 3362 9145181 9146034 2.590000e-97 366.0
18 TraesCS2A01G300400 chr2B 97.241 145 4 0 3221 3365 451915890 451915746 3.510000e-61 246.0
19 TraesCS2A01G300400 chr2B 96.694 121 4 0 378 498 692166866 692166746 7.720000e-48 202.0
20 TraesCS2A01G300400 chr2B 96.694 121 3 1 378 498 788660478 788660359 2.780000e-47 200.0
21 TraesCS2A01G300400 chr2B 87.121 132 13 3 500 631 451122322 451122449 3.670000e-31 147.0
22 TraesCS2A01G300400 chr2B 94.030 67 0 1 3837 3903 451899726 451899664 1.040000e-16 99.0
23 TraesCS2A01G300400 chr2B 97.561 41 1 0 345 385 451930376 451930336 2.270000e-08 71.3
24 TraesCS2A01G300400 chr2B 93.023 43 1 2 172 214 451954717 451954677 1.370000e-05 62.1
25 TraesCS2A01G300400 chr1B 90.076 655 52 11 3904 4549 555846336 555846986 0.000000e+00 837.0
26 TraesCS2A01G300400 chr1B 97.561 123 3 0 378 500 137651558 137651680 1.280000e-50 211.0
27 TraesCS2A01G300400 chr5B 90.993 433 31 7 3904 4330 341552429 341552859 1.100000e-160 577.0
28 TraesCS2A01G300400 chr5B 94.037 218 7 6 4336 4549 38725658 38725443 4.390000e-85 326.0
29 TraesCS2A01G300400 chr5B 93.548 217 8 6 4336 4549 341553436 341553649 7.340000e-83 318.0
30 TraesCS2A01G300400 chr5B 91.667 144 10 2 360 503 653004759 653004900 9.980000e-47 198.0
31 TraesCS2A01G300400 chr5D 90.951 431 34 5 3903 4330 43071888 43071460 3.950000e-160 575.0
32 TraesCS2A01G300400 chr5D 93.119 218 9 6 4336 4549 43070880 43070665 9.500000e-82 315.0
33 TraesCS2A01G300400 chr5D 96.000 125 5 0 382 506 532749819 532749695 2.150000e-48 204.0
34 TraesCS2A01G300400 chr1A 87.500 424 33 11 3904 4324 53021496 53021090 5.330000e-129 472.0
35 TraesCS2A01G300400 chr1A 91.705 217 13 5 4336 4549 53020317 53020103 3.440000e-76 296.0
36 TraesCS2A01G300400 chr1D 89.835 364 29 5 3966 4324 425050245 425049885 1.150000e-125 460.0
37 TraesCS2A01G300400 chr1D 75.921 353 56 16 3980 4315 360093074 360092734 2.190000e-33 154.0
38 TraesCS2A01G300400 chr5A 91.549 284 15 5 4052 4330 705958717 705958438 2.570000e-102 383.0
39 TraesCS2A01G300400 chr5A 95.238 126 6 0 381 506 706439027 706438902 2.780000e-47 200.0
40 TraesCS2A01G300400 chr3B 89.259 270 26 3 3957 4225 58022202 58022469 7.290000e-88 335.0
41 TraesCS2A01G300400 chr3B 93.519 216 10 4 4336 4549 58024815 58025028 7.340000e-83 318.0
42 TraesCS2A01G300400 chr3B 95.968 124 5 0 380 503 98078006 98078129 7.720000e-48 202.0
43 TraesCS2A01G300400 chr3B 95.122 123 6 0 381 503 755450321 755450199 1.290000e-45 195.0
44 TraesCS2A01G300400 chr6A 91.705 217 13 5 4336 4549 8744792 8744578 3.440000e-76 296.0
45 TraesCS2A01G300400 chr6A 77.103 428 79 17 3904 4324 472353093 472352678 3.540000e-56 230.0
46 TraesCS2A01G300400 chr6B 77.397 438 78 19 3895 4324 61208190 61208614 1.640000e-59 241.0
47 TraesCS2A01G300400 chr6D 95.968 124 5 0 379 502 293082485 293082608 7.720000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G300400 chr2A 516093008 516097556 4548 True 2838.000000 8401 93.798667 1 4549 3 chr2A.!!$R2 4548
1 TraesCS2A01G300400 chr2A 514859202 514862241 3039 False 3958.000000 3958 90.442000 505 3502 1 chr2A.!!$F1 2997
2 TraesCS2A01G300400 chr2A 66765372 66766593 1221 True 448.500000 575 92.476500 3904 4549 2 chr2A.!!$R1 645
3 TraesCS2A01G300400 chr2D 379857853 379861084 3231 False 4301.000000 4301 90.895000 624 3826 1 chr2D.!!$F1 3202
4 TraesCS2A01G300400 chr2D 380687514 380691160 3646 True 1710.333333 4723 88.519667 138 3903 3 chr2D.!!$R1 3765
5 TraesCS2A01G300400 chr2B 451923010 451925260 2250 True 3642.000000 3642 95.870000 984 3234 1 chr2B.!!$R4 2250
6 TraesCS2A01G300400 chr2B 451122322 451127528 5206 False 2015.500000 3884 89.112000 500 3502 2 chr2B.!!$F2 3002
7 TraesCS2A01G300400 chr2B 714125429 714126076 647 True 913.000000 913 92.166000 3903 4549 1 chr2B.!!$R6 646
8 TraesCS2A01G300400 chr2B 9145181 9146034 853 False 366.000000 366 74.769000 2512 3362 1 chr2B.!!$F1 850
9 TraesCS2A01G300400 chr2B 451929664 451930376 712 True 284.766667 398 95.748000 345 992 3 chr2B.!!$R8 647
10 TraesCS2A01G300400 chr1B 555846336 555846986 650 False 837.000000 837 90.076000 3904 4549 1 chr1B.!!$F2 645
11 TraesCS2A01G300400 chr5B 341552429 341553649 1220 False 447.500000 577 92.270500 3904 4549 2 chr5B.!!$F2 645
12 TraesCS2A01G300400 chr5D 43070665 43071888 1223 True 445.000000 575 92.035000 3903 4549 2 chr5D.!!$R2 646
13 TraesCS2A01G300400 chr1A 53020103 53021496 1393 True 384.000000 472 89.602500 3904 4549 2 chr1A.!!$R1 645
14 TraesCS2A01G300400 chr3B 58022202 58025028 2826 False 326.500000 335 91.389000 3957 4549 2 chr3B.!!$F2 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 404 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17 F
403 407 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
496 500 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 F
1614 4027 0.462581 TGATTGACCGAGCTCATGGC 60.463 55.000 15.40 6.85 42.19 4.40 F
2250 4664 1.604755 ACCGACAGTCGATGCTCTATC 59.395 52.381 24.88 0.00 43.74 2.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 4017 0.108138 ACAGTAACGGCCATGAGCTC 60.108 55.000 6.82 6.82 43.05 4.09 R
1675 4088 0.260816 TCCCCGCTAGACCAGTATGT 59.739 55.000 0.00 0.00 0.00 2.29 R
2284 4701 1.067846 TGTGTCCGTAGTGTCAGCATC 60.068 52.381 0.00 0.00 0.00 3.91 R
2614 5034 1.621317 TGCCATTGTAACCGAGTCAGA 59.379 47.619 0.00 0.00 0.00 3.27 R
4025 6475 1.198867 GCCAAACGTGCACATGATACA 59.801 47.619 18.64 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.798223 TGAAAATTCAGAGTCCACGCG 59.202 47.619 3.53 3.53 32.50 6.01
25 26 1.798813 GAAAATTCAGAGTCCACGCGT 59.201 47.619 5.58 5.58 0.00 6.01
26 27 1.878953 AAATTCAGAGTCCACGCGTT 58.121 45.000 10.22 0.00 0.00 4.84
27 28 1.878953 AATTCAGAGTCCACGCGTTT 58.121 45.000 10.22 0.00 0.00 3.60
28 29 1.878953 ATTCAGAGTCCACGCGTTTT 58.121 45.000 10.22 0.00 0.00 2.43
29 30 0.934496 TTCAGAGTCCACGCGTTTTG 59.066 50.000 10.22 0.00 0.00 2.44
30 31 0.878523 TCAGAGTCCACGCGTTTTGG 60.879 55.000 10.22 8.81 35.18 3.28
31 32 0.878523 CAGAGTCCACGCGTTTTGGA 60.879 55.000 10.22 11.61 41.06 3.53
45 46 2.941064 GTTTTGGACGGTAATCTAGCCC 59.059 50.000 0.00 0.00 0.00 5.19
46 47 1.868713 TTGGACGGTAATCTAGCCCA 58.131 50.000 0.00 0.00 0.00 5.36
47 48 1.117150 TGGACGGTAATCTAGCCCAC 58.883 55.000 0.00 0.00 0.00 4.61
48 49 0.391966 GGACGGTAATCTAGCCCACC 59.608 60.000 0.00 0.00 0.00 4.61
49 50 1.411041 GACGGTAATCTAGCCCACCT 58.589 55.000 5.34 0.00 0.00 4.00
50 51 1.068741 GACGGTAATCTAGCCCACCTG 59.931 57.143 5.34 2.69 0.00 4.00
51 52 1.120530 CGGTAATCTAGCCCACCTGT 58.879 55.000 5.34 0.00 0.00 4.00
52 53 1.485066 CGGTAATCTAGCCCACCTGTT 59.515 52.381 5.34 0.00 0.00 3.16
53 54 2.741878 CGGTAATCTAGCCCACCTGTTG 60.742 54.545 5.34 0.00 0.00 3.33
54 55 2.238898 GGTAATCTAGCCCACCTGTTGT 59.761 50.000 0.00 0.00 0.00 3.32
55 56 3.453353 GGTAATCTAGCCCACCTGTTGTA 59.547 47.826 0.00 0.00 0.00 2.41
56 57 3.914426 AATCTAGCCCACCTGTTGTAG 57.086 47.619 0.00 0.00 0.00 2.74
57 58 2.320681 TCTAGCCCACCTGTTGTAGT 57.679 50.000 0.00 0.00 0.00 2.73
58 59 2.616524 TCTAGCCCACCTGTTGTAGTT 58.383 47.619 0.00 0.00 0.00 2.24
59 60 2.976882 TCTAGCCCACCTGTTGTAGTTT 59.023 45.455 0.00 0.00 0.00 2.66
60 61 4.161876 TCTAGCCCACCTGTTGTAGTTTA 58.838 43.478 0.00 0.00 0.00 2.01
61 62 3.136009 AGCCCACCTGTTGTAGTTTAC 57.864 47.619 0.00 0.00 0.00 2.01
62 63 2.709397 AGCCCACCTGTTGTAGTTTACT 59.291 45.455 0.00 0.00 0.00 2.24
63 64 3.905591 AGCCCACCTGTTGTAGTTTACTA 59.094 43.478 0.00 0.00 0.00 1.82
64 65 4.020485 AGCCCACCTGTTGTAGTTTACTAG 60.020 45.833 0.00 0.00 0.00 2.57
65 66 4.262765 GCCCACCTGTTGTAGTTTACTAGT 60.263 45.833 0.00 0.00 0.00 2.57
66 67 5.744007 GCCCACCTGTTGTAGTTTACTAGTT 60.744 44.000 0.00 0.00 0.00 2.24
67 68 6.293698 CCCACCTGTTGTAGTTTACTAGTTT 58.706 40.000 0.00 0.00 0.00 2.66
68 69 6.426025 CCCACCTGTTGTAGTTTACTAGTTTC 59.574 42.308 0.00 0.00 0.00 2.78
69 70 6.987992 CCACCTGTTGTAGTTTACTAGTTTCA 59.012 38.462 0.00 0.00 0.00 2.69
70 71 7.170998 CCACCTGTTGTAGTTTACTAGTTTCAG 59.829 40.741 0.00 0.00 0.00 3.02
71 72 7.924412 CACCTGTTGTAGTTTACTAGTTTCAGA 59.076 37.037 0.00 0.00 0.00 3.27
72 73 8.648693 ACCTGTTGTAGTTTACTAGTTTCAGAT 58.351 33.333 0.00 0.00 0.00 2.90
73 74 9.141400 CCTGTTGTAGTTTACTAGTTTCAGATC 57.859 37.037 0.00 0.00 0.00 2.75
74 75 8.738199 TGTTGTAGTTTACTAGTTTCAGATCG 57.262 34.615 0.00 0.00 0.00 3.69
75 76 7.327761 TGTTGTAGTTTACTAGTTTCAGATCGC 59.672 37.037 0.00 0.00 0.00 4.58
76 77 7.154435 TGTAGTTTACTAGTTTCAGATCGCT 57.846 36.000 0.00 0.00 0.00 4.93
77 78 7.600065 TGTAGTTTACTAGTTTCAGATCGCTT 58.400 34.615 0.00 0.00 0.00 4.68
78 79 8.086522 TGTAGTTTACTAGTTTCAGATCGCTTT 58.913 33.333 0.00 0.00 0.00 3.51
79 80 9.565213 GTAGTTTACTAGTTTCAGATCGCTTTA 57.435 33.333 0.00 0.00 0.00 1.85
80 81 8.463456 AGTTTACTAGTTTCAGATCGCTTTAC 57.537 34.615 0.00 0.00 0.00 2.01
81 82 8.305317 AGTTTACTAGTTTCAGATCGCTTTACT 58.695 33.333 0.00 0.00 0.00 2.24
82 83 8.923683 GTTTACTAGTTTCAGATCGCTTTACTT 58.076 33.333 0.00 0.00 0.00 2.24
83 84 9.485206 TTTACTAGTTTCAGATCGCTTTACTTT 57.515 29.630 0.00 0.00 0.00 2.66
84 85 7.583860 ACTAGTTTCAGATCGCTTTACTTTC 57.416 36.000 0.00 0.00 0.00 2.62
85 86 5.864628 AGTTTCAGATCGCTTTACTTTCC 57.135 39.130 0.00 0.00 0.00 3.13
86 87 5.552178 AGTTTCAGATCGCTTTACTTTCCT 58.448 37.500 0.00 0.00 0.00 3.36
87 88 5.409826 AGTTTCAGATCGCTTTACTTTCCTG 59.590 40.000 0.00 0.00 0.00 3.86
88 89 4.801330 TCAGATCGCTTTACTTTCCTGA 57.199 40.909 0.00 0.00 0.00 3.86
89 90 5.147330 TCAGATCGCTTTACTTTCCTGAA 57.853 39.130 0.00 0.00 0.00 3.02
90 91 5.171476 TCAGATCGCTTTACTTTCCTGAAG 58.829 41.667 0.00 0.00 41.32 3.02
91 92 5.047306 TCAGATCGCTTTACTTTCCTGAAGA 60.047 40.000 0.00 0.00 38.77 2.87
92 93 5.814705 CAGATCGCTTTACTTTCCTGAAGAT 59.185 40.000 0.00 0.00 38.77 2.40
93 94 6.314896 CAGATCGCTTTACTTTCCTGAAGATT 59.685 38.462 0.00 0.00 38.77 2.40
94 95 5.862924 TCGCTTTACTTTCCTGAAGATTG 57.137 39.130 0.00 0.00 38.77 2.67
95 96 5.547465 TCGCTTTACTTTCCTGAAGATTGA 58.453 37.500 0.00 0.00 38.77 2.57
96 97 5.995282 TCGCTTTACTTTCCTGAAGATTGAA 59.005 36.000 0.00 0.00 38.77 2.69
97 98 6.655003 TCGCTTTACTTTCCTGAAGATTGAAT 59.345 34.615 0.00 0.00 38.77 2.57
98 99 6.744537 CGCTTTACTTTCCTGAAGATTGAATG 59.255 38.462 0.00 0.00 38.77 2.67
99 100 6.529477 GCTTTACTTTCCTGAAGATTGAATGC 59.471 38.462 0.00 0.00 38.77 3.56
100 101 4.691860 ACTTTCCTGAAGATTGAATGCG 57.308 40.909 0.00 0.00 38.77 4.73
101 102 4.326826 ACTTTCCTGAAGATTGAATGCGA 58.673 39.130 0.00 0.00 38.77 5.10
102 103 4.394300 ACTTTCCTGAAGATTGAATGCGAG 59.606 41.667 0.00 0.00 38.77 5.03
103 104 2.910199 TCCTGAAGATTGAATGCGAGG 58.090 47.619 0.00 0.00 0.00 4.63
104 105 1.332997 CCTGAAGATTGAATGCGAGGC 59.667 52.381 0.00 0.00 0.00 4.70
105 106 2.286872 CTGAAGATTGAATGCGAGGCT 58.713 47.619 0.00 0.00 0.00 4.58
106 107 2.681848 CTGAAGATTGAATGCGAGGCTT 59.318 45.455 0.00 0.00 0.00 4.35
107 108 3.084039 TGAAGATTGAATGCGAGGCTTT 58.916 40.909 0.00 0.00 0.00 3.51
108 109 3.119743 TGAAGATTGAATGCGAGGCTTTG 60.120 43.478 0.00 0.00 0.00 2.77
109 110 2.715046 AGATTGAATGCGAGGCTTTGA 58.285 42.857 0.00 0.00 0.00 2.69
110 111 2.681848 AGATTGAATGCGAGGCTTTGAG 59.318 45.455 0.00 0.00 0.00 3.02
111 112 1.896220 TTGAATGCGAGGCTTTGAGT 58.104 45.000 0.00 0.00 0.00 3.41
112 113 1.442769 TGAATGCGAGGCTTTGAGTC 58.557 50.000 0.00 0.00 0.00 3.36
113 114 0.729690 GAATGCGAGGCTTTGAGTCC 59.270 55.000 0.00 0.00 0.00 3.85
114 115 0.326264 AATGCGAGGCTTTGAGTCCT 59.674 50.000 0.00 0.00 34.90 3.85
115 116 0.392193 ATGCGAGGCTTTGAGTCCTG 60.392 55.000 0.00 0.00 31.71 3.86
116 117 1.743252 GCGAGGCTTTGAGTCCTGG 60.743 63.158 0.00 0.00 31.71 4.45
117 118 1.975327 CGAGGCTTTGAGTCCTGGA 59.025 57.895 0.00 0.00 31.71 3.86
118 119 0.390472 CGAGGCTTTGAGTCCTGGAC 60.390 60.000 19.20 19.20 31.71 4.02
119 120 0.035915 GAGGCTTTGAGTCCTGGACC 60.036 60.000 22.81 14.59 32.18 4.46
120 121 0.474660 AGGCTTTGAGTCCTGGACCT 60.475 55.000 22.81 8.53 32.18 3.85
121 122 0.322008 GGCTTTGAGTCCTGGACCTG 60.322 60.000 22.81 9.89 32.18 4.00
122 123 0.322008 GCTTTGAGTCCTGGACCTGG 60.322 60.000 22.81 11.18 32.18 4.45
123 124 1.352083 CTTTGAGTCCTGGACCTGGA 58.648 55.000 22.81 15.82 32.18 3.86
124 125 1.277557 CTTTGAGTCCTGGACCTGGAG 59.722 57.143 22.81 12.34 32.29 3.86
125 126 0.191064 TTGAGTCCTGGACCTGGAGT 59.809 55.000 23.97 23.97 37.75 3.85
126 127 1.081481 TGAGTCCTGGACCTGGAGTA 58.919 55.000 23.83 12.08 35.70 2.59
127 128 1.006043 TGAGTCCTGGACCTGGAGTAG 59.994 57.143 23.83 0.00 35.70 2.57
128 129 1.006162 GAGTCCTGGACCTGGAGTAGT 59.994 57.143 23.83 8.96 35.70 2.73
129 130 2.241685 GAGTCCTGGACCTGGAGTAGTA 59.758 54.545 23.83 0.00 35.70 1.82
130 131 2.025131 AGTCCTGGACCTGGAGTAGTAC 60.025 54.545 22.82 10.48 34.18 2.73
131 132 1.287146 TCCTGGACCTGGAGTAGTACC 59.713 57.143 15.82 0.00 0.00 3.34
132 133 1.390565 CTGGACCTGGAGTAGTACCG 58.609 60.000 0.00 0.00 0.00 4.02
133 134 0.994247 TGGACCTGGAGTAGTACCGA 59.006 55.000 0.00 0.00 0.00 4.69
134 135 1.064906 TGGACCTGGAGTAGTACCGAG 60.065 57.143 0.00 0.00 0.00 4.63
135 136 1.677942 GACCTGGAGTAGTACCGAGG 58.322 60.000 0.00 14.23 34.39 4.63
136 137 0.258194 ACCTGGAGTAGTACCGAGGG 59.742 60.000 17.77 10.01 33.35 4.30
157 158 3.193691 GGGTGTCTTCTCTGAAGATTCGA 59.806 47.826 12.32 0.00 0.00 3.71
158 159 4.170256 GGTGTCTTCTCTGAAGATTCGAC 58.830 47.826 12.32 7.76 0.00 4.20
161 162 4.170256 GTCTTCTCTGAAGATTCGACCAC 58.830 47.826 12.32 0.00 0.00 4.16
165 166 4.498241 TCTCTGAAGATTCGACCACATTG 58.502 43.478 0.00 0.00 0.00 2.82
166 167 3.002791 TCTGAAGATTCGACCACATTGC 58.997 45.455 0.00 0.00 0.00 3.56
187 188 8.655092 CATTGCTTTACTTCTACTTCTCTGAAG 58.345 37.037 5.85 5.85 41.87 3.02
199 200 4.869297 ACTTCTCTGAAGATTGAATGCGAG 59.131 41.667 13.42 0.00 0.00 5.03
207 208 2.681848 AGATTGAATGCGAGGCTTTGAG 59.318 45.455 0.00 0.00 0.00 3.02
220 221 2.614987 GGCTTTGAGTCACTGAGCTGAT 60.615 50.000 17.17 0.00 33.96 2.90
225 226 2.497675 TGAGTCACTGAGCTGATTACCC 59.502 50.000 0.00 0.00 0.00 3.69
226 227 1.834263 AGTCACTGAGCTGATTACCCC 59.166 52.381 0.00 0.00 0.00 4.95
228 229 0.179073 CACTGAGCTGATTACCCCGG 60.179 60.000 0.00 0.00 0.00 5.73
230 231 2.111251 GAGCTGATTACCCCGGCC 59.889 66.667 0.00 0.00 36.61 6.13
231 232 3.477578 GAGCTGATTACCCCGGCCC 62.478 68.421 0.00 0.00 36.61 5.80
254 255 0.178873 AGGCCTGGACCTGGAGTTTA 60.179 55.000 21.06 0.00 39.13 2.01
270 271 9.574458 CCTGGAGTTTATGTAATATAGATGACG 57.426 37.037 0.00 0.00 0.00 4.35
309 310 6.489700 TGTTTGAATTGTTCTGCTAAGATGGA 59.510 34.615 0.00 0.00 30.72 3.41
310 311 7.177216 TGTTTGAATTGTTCTGCTAAGATGGAT 59.823 33.333 0.00 0.00 30.72 3.41
311 312 7.707624 TTGAATTGTTCTGCTAAGATGGATT 57.292 32.000 0.00 0.00 30.72 3.01
312 313 7.707624 TGAATTGTTCTGCTAAGATGGATTT 57.292 32.000 0.00 0.00 30.72 2.17
313 314 8.125978 TGAATTGTTCTGCTAAGATGGATTTT 57.874 30.769 0.00 0.00 30.72 1.82
314 315 8.030692 TGAATTGTTCTGCTAAGATGGATTTTG 58.969 33.333 0.00 0.00 30.72 2.44
315 316 6.899393 TTGTTCTGCTAAGATGGATTTTGT 57.101 33.333 0.00 0.00 30.72 2.83
316 317 6.899393 TGTTCTGCTAAGATGGATTTTGTT 57.101 33.333 0.00 0.00 30.72 2.83
317 318 6.913170 TGTTCTGCTAAGATGGATTTTGTTC 58.087 36.000 0.00 0.00 30.72 3.18
318 319 6.489700 TGTTCTGCTAAGATGGATTTTGTTCA 59.510 34.615 0.00 0.00 30.72 3.18
319 320 7.014134 TGTTCTGCTAAGATGGATTTTGTTCAA 59.986 33.333 0.00 0.00 30.72 2.69
320 321 7.149569 TCTGCTAAGATGGATTTTGTTCAAG 57.850 36.000 0.00 0.00 0.00 3.02
321 322 5.713025 TGCTAAGATGGATTTTGTTCAAGC 58.287 37.500 0.00 0.00 0.00 4.01
322 323 5.243507 TGCTAAGATGGATTTTGTTCAAGCA 59.756 36.000 0.00 0.00 33.07 3.91
323 324 6.158598 GCTAAGATGGATTTTGTTCAAGCAA 58.841 36.000 0.00 0.00 0.00 3.91
324 325 6.815142 GCTAAGATGGATTTTGTTCAAGCAAT 59.185 34.615 0.00 0.00 0.00 3.56
325 326 7.332678 GCTAAGATGGATTTTGTTCAAGCAATT 59.667 33.333 0.00 0.00 0.00 2.32
326 327 9.211485 CTAAGATGGATTTTGTTCAAGCAATTT 57.789 29.630 0.00 0.00 0.00 1.82
327 328 8.454570 AAGATGGATTTTGTTCAAGCAATTTT 57.545 26.923 0.00 0.00 0.00 1.82
328 329 8.454570 AGATGGATTTTGTTCAAGCAATTTTT 57.545 26.923 0.00 0.00 0.00 1.94
386 390 9.422681 TGCCCTATGAATATAAGATACTACTCC 57.577 37.037 0.00 0.00 0.00 3.85
387 391 8.862085 GCCCTATGAATATAAGATACTACTCCC 58.138 40.741 0.00 0.00 0.00 4.30
391 395 8.754991 ATGAATATAAGATACTACTCCCTCCG 57.245 38.462 0.00 0.00 0.00 4.63
392 396 7.696981 TGAATATAAGATACTACTCCCTCCGT 58.303 38.462 0.00 0.00 0.00 4.69
393 397 7.828223 TGAATATAAGATACTACTCCCTCCGTC 59.172 40.741 0.00 0.00 0.00 4.79
394 398 2.955342 AGATACTACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
395 399 1.072015 AGATACTACTCCCTCCGTCCG 59.928 57.143 0.00 0.00 0.00 4.79
396 400 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
397 401 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
398 402 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
399 403 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
400 404 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
401 405 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
402 406 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
403 407 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
404 408 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
405 409 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
406 410 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
407 411 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
408 412 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
409 413 2.299582 TCCGTCCGGAAATACTTGTCAA 59.700 45.455 5.23 0.00 42.05 3.18
410 414 2.414138 CCGTCCGGAAATACTTGTCAAC 59.586 50.000 5.23 0.00 37.50 3.18
411 415 3.061322 CGTCCGGAAATACTTGTCAACA 58.939 45.455 5.23 0.00 0.00 3.33
412 416 3.495377 CGTCCGGAAATACTTGTCAACAA 59.505 43.478 5.23 0.00 0.00 2.83
413 417 4.024725 CGTCCGGAAATACTTGTCAACAAA 60.025 41.667 5.23 0.00 35.15 2.83
414 418 5.504337 CGTCCGGAAATACTTGTCAACAAAA 60.504 40.000 5.23 0.00 35.15 2.44
415 419 6.443792 GTCCGGAAATACTTGTCAACAAAAT 58.556 36.000 5.23 0.00 35.15 1.82
416 420 6.362283 GTCCGGAAATACTTGTCAACAAAATG 59.638 38.462 5.23 0.00 35.15 2.32
417 421 6.039941 TCCGGAAATACTTGTCAACAAAATGT 59.960 34.615 0.00 0.00 35.15 2.71
418 422 7.228906 TCCGGAAATACTTGTCAACAAAATGTA 59.771 33.333 0.00 0.00 35.15 2.29
419 423 8.026607 CCGGAAATACTTGTCAACAAAATGTAT 58.973 33.333 0.00 0.00 35.15 2.29
420 424 8.849490 CGGAAATACTTGTCAACAAAATGTATG 58.151 33.333 6.90 0.00 35.15 2.39
421 425 9.906660 GGAAATACTTGTCAACAAAATGTATGA 57.093 29.630 6.90 0.00 35.15 2.15
427 431 9.044150 ACTTGTCAACAAAATGTATGAAAATGG 57.956 29.630 0.00 0.00 35.15 3.16
428 432 9.258826 CTTGTCAACAAAATGTATGAAAATGGA 57.741 29.630 0.00 0.00 35.15 3.41
429 433 9.775854 TTGTCAACAAAATGTATGAAAATGGAT 57.224 25.926 0.00 0.00 32.11 3.41
430 434 9.205719 TGTCAACAAAATGTATGAAAATGGATG 57.794 29.630 0.00 0.00 0.00 3.51
431 435 9.206870 GTCAACAAAATGTATGAAAATGGATGT 57.793 29.630 0.00 0.00 0.00 3.06
473 477 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
474 478 9.498176 CATCTAGATACATCCATTTCAATGACA 57.502 33.333 4.54 0.00 38.70 3.58
476 480 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
477 481 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
479 483 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
483 487 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
484 488 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
485 489 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
486 490 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
487 491 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
488 492 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
489 493 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
490 494 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
491 495 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
492 496 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
493 497 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
494 498 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
495 499 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
496 500 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
497 501 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
498 502 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
556 560 0.743097 GAGGGCAATGCATTCTGGTC 59.257 55.000 9.53 0.00 0.00 4.02
644 766 7.653647 GCAGTATAGTGCTAGTGATCTTTACT 58.346 38.462 22.76 0.00 40.54 2.24
645 767 8.784994 GCAGTATAGTGCTAGTGATCTTTACTA 58.215 37.037 22.76 0.00 40.54 1.82
809 3197 3.055819 TGCTGATAGAACCTGACCACTTC 60.056 47.826 0.00 0.00 0.00 3.01
956 3351 8.657387 TCCATTTTCCACCATGTCTAATTTTA 57.343 30.769 0.00 0.00 0.00 1.52
1084 3497 7.612633 TGTTACTTCTTGGACTTGTTTTTACCT 59.387 33.333 0.00 0.00 0.00 3.08
1134 3547 2.283101 TCCATTGCACCTGGCCAC 60.283 61.111 0.00 0.00 43.89 5.01
1318 3731 4.928263 TGATTATCCAATCACACAACCCA 58.072 39.130 0.00 0.00 44.44 4.51
1375 3788 4.686972 TCTTGTCATCTTAGATCAAGCCG 58.313 43.478 14.92 0.00 36.47 5.52
1397 3810 4.452455 CGCCAATTCCATAATCTGGTCTAC 59.548 45.833 0.00 0.00 46.08 2.59
1604 4017 3.563808 TCCAACAAGAACTTGATTGACCG 59.436 43.478 19.35 8.78 42.93 4.79
1614 4027 0.462581 TGATTGACCGAGCTCATGGC 60.463 55.000 15.40 6.85 42.19 4.40
1675 4088 3.950397 ACGCCTTTGAACTCATCCATAA 58.050 40.909 0.00 0.00 0.00 1.90
2127 4541 7.824779 ACTGATAAATTCTACTCCTTGTCCAAC 59.175 37.037 0.00 0.00 0.00 3.77
2204 4618 2.031333 GTGCAGAAGTTTGCCTGAGAAG 60.031 50.000 0.00 0.00 43.43 2.85
2250 4664 1.604755 ACCGACAGTCGATGCTCTATC 59.395 52.381 24.88 0.00 43.74 2.08
2284 4701 6.391227 AACTCCTCAATGTAAAACAACAGG 57.609 37.500 0.00 0.00 31.70 4.00
2298 4715 1.995484 CAACAGGATGCTGACACTACG 59.005 52.381 22.24 0.00 42.53 3.51
2614 5034 4.558226 TCTGTGTTCAAGGCATATCTGT 57.442 40.909 0.00 0.00 0.00 3.41
2692 5112 0.325296 ATTCAGGGCCGAGGTGACTA 60.325 55.000 0.00 0.00 44.43 2.59
2817 5237 8.202811 TCTCTTGACATCCATCTATTTCAGAAG 58.797 37.037 0.00 0.00 36.67 2.85
3088 5514 0.676782 AAGCGGGGTTGCTATCACAC 60.677 55.000 0.00 0.00 46.60 3.82
3292 5718 0.331954 TCTAGAGGAGGCTGAACGGT 59.668 55.000 0.00 0.00 0.00 4.83
3351 5777 1.904990 TTGATCGGCCGACAATGGGA 61.905 55.000 33.75 12.01 0.00 4.37
3364 5790 2.878406 ACAATGGGAGAAGTTGTTCGTG 59.122 45.455 0.00 0.00 37.79 4.35
3419 5845 3.264450 CCCATTCCAAGACTACTTCAGGT 59.736 47.826 0.00 0.00 33.70 4.00
3420 5846 4.263506 CCCATTCCAAGACTACTTCAGGTT 60.264 45.833 0.00 0.00 33.70 3.50
3502 5950 8.233190 GGCATACATAAGAAGCAAACATCTATC 58.767 37.037 0.00 0.00 0.00 2.08
3503 5951 8.997323 GCATACATAAGAAGCAAACATCTATCT 58.003 33.333 0.00 0.00 0.00 1.98
3578 6026 6.974622 CCCAATAGCTGTGTAATTTAAGCTTG 59.025 38.462 9.86 1.62 43.33 4.01
3626 6074 6.680874 TCAGTCTAGTCGTTCTAATCTTCC 57.319 41.667 0.00 0.00 0.00 3.46
3627 6075 6.178324 TCAGTCTAGTCGTTCTAATCTTCCA 58.822 40.000 0.00 0.00 0.00 3.53
3672 6121 0.753262 AGTTCAGTGCGACCTCTTGT 59.247 50.000 0.00 0.00 0.00 3.16
3674 6123 2.563179 AGTTCAGTGCGACCTCTTGTAT 59.437 45.455 0.00 0.00 0.00 2.29
3702 6151 7.887996 TGATTTTGTCAATGCAAAGGAATAC 57.112 32.000 0.00 0.00 39.20 1.89
3703 6152 7.440198 TGATTTTGTCAATGCAAAGGAATACA 58.560 30.769 0.00 0.00 39.20 2.29
3716 6165 6.347644 GCAAAGGAATACATTTTTGTTCTGGC 60.348 38.462 0.00 0.00 34.04 4.85
3745 6194 0.463654 TGCTTTGCTTCGTGGTGACT 60.464 50.000 0.00 0.00 0.00 3.41
3768 6217 2.807967 TGTTCGCTTCTTCACTGGAATG 59.192 45.455 0.00 0.00 31.34 2.67
3835 6284 2.364324 TGACAGTTAGTGGTCACTGGAC 59.636 50.000 13.32 11.27 44.12 4.02
3888 6337 7.011994 TGCTAATGATTTGGATGGAACCATAT 58.988 34.615 6.31 0.00 39.82 1.78
3889 6338 8.169393 TGCTAATGATTTGGATGGAACCATATA 58.831 33.333 6.31 0.00 39.82 0.86
3890 6339 9.193806 GCTAATGATTTGGATGGAACCATATAT 57.806 33.333 6.31 0.00 39.82 0.86
4009 6458 8.092068 TCATCTAACTTGTCTTTCCGTTCATAA 58.908 33.333 0.00 0.00 0.00 1.90
4025 6475 6.237313 GTTCATAAACGGTGCTTTTCTACT 57.763 37.500 0.00 0.00 0.00 2.57
4040 6490 4.450082 TTCTACTGTATCATGTGCACGT 57.550 40.909 13.13 9.52 0.00 4.49
4048 6498 1.528129 TCATGTGCACGTTTGGCATA 58.472 45.000 9.37 0.24 44.11 3.14
4206 6663 2.878406 CAGGATTCAAACACACGACCTT 59.122 45.455 0.00 0.00 0.00 3.50
4215 6672 6.693466 TCAAACACACGACCTTCTATGATTA 58.307 36.000 0.00 0.00 0.00 1.75
4324 8439 8.610035 AGTTAAAGTAGAAACCAAACGAGAAAG 58.390 33.333 0.00 0.00 0.00 2.62
4325 8440 5.419760 AAGTAGAAACCAAACGAGAAAGC 57.580 39.130 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.798223 CGCGTGGACTCTGAATTTTCA 59.202 47.619 0.00 0.00 35.57 2.69
6 7 1.878953 ACGCGTGGACTCTGAATTTT 58.121 45.000 12.93 0.00 0.00 1.82
7 8 1.878953 AACGCGTGGACTCTGAATTT 58.121 45.000 14.98 0.00 0.00 1.82
8 9 1.878953 AAACGCGTGGACTCTGAATT 58.121 45.000 14.98 0.00 0.00 2.17
9 10 1.531149 CAAAACGCGTGGACTCTGAAT 59.469 47.619 14.98 0.00 0.00 2.57
10 11 0.934496 CAAAACGCGTGGACTCTGAA 59.066 50.000 14.98 0.00 0.00 3.02
11 12 0.878523 CCAAAACGCGTGGACTCTGA 60.879 55.000 14.98 0.00 38.54 3.27
12 13 0.878523 TCCAAAACGCGTGGACTCTG 60.879 55.000 14.98 3.98 40.33 3.35
13 14 1.444250 TCCAAAACGCGTGGACTCT 59.556 52.632 14.98 0.00 40.33 3.24
14 15 4.036977 TCCAAAACGCGTGGACTC 57.963 55.556 14.98 0.00 40.33 3.36
24 25 2.941064 GGGCTAGATTACCGTCCAAAAC 59.059 50.000 0.00 0.00 0.00 2.43
25 26 2.572556 TGGGCTAGATTACCGTCCAAAA 59.427 45.455 0.00 0.00 0.00 2.44
26 27 2.093341 GTGGGCTAGATTACCGTCCAAA 60.093 50.000 0.00 0.00 0.00 3.28
27 28 1.483415 GTGGGCTAGATTACCGTCCAA 59.517 52.381 0.00 0.00 0.00 3.53
28 29 1.117150 GTGGGCTAGATTACCGTCCA 58.883 55.000 0.00 0.00 0.00 4.02
29 30 0.391966 GGTGGGCTAGATTACCGTCC 59.608 60.000 0.00 0.00 0.00 4.79
30 31 1.068741 CAGGTGGGCTAGATTACCGTC 59.931 57.143 0.00 0.00 38.24 4.79
31 32 1.120530 CAGGTGGGCTAGATTACCGT 58.879 55.000 0.00 0.00 38.24 4.83
32 33 1.120530 ACAGGTGGGCTAGATTACCG 58.879 55.000 0.00 0.00 38.24 4.02
33 34 2.238898 ACAACAGGTGGGCTAGATTACC 59.761 50.000 0.00 0.00 0.00 2.85
34 35 3.629142 ACAACAGGTGGGCTAGATTAC 57.371 47.619 0.00 0.00 0.00 1.89
35 36 4.359105 ACTACAACAGGTGGGCTAGATTA 58.641 43.478 0.00 0.00 31.13 1.75
36 37 3.182152 ACTACAACAGGTGGGCTAGATT 58.818 45.455 0.00 0.00 31.13 2.40
37 38 2.834113 ACTACAACAGGTGGGCTAGAT 58.166 47.619 0.00 0.00 31.13 1.98
38 39 2.320681 ACTACAACAGGTGGGCTAGA 57.679 50.000 0.00 0.00 31.13 2.43
39 40 3.418684 AAACTACAACAGGTGGGCTAG 57.581 47.619 0.00 0.00 31.13 3.42
40 41 3.905591 AGTAAACTACAACAGGTGGGCTA 59.094 43.478 0.00 0.00 31.13 3.93
41 42 2.709397 AGTAAACTACAACAGGTGGGCT 59.291 45.455 0.00 0.00 31.13 5.19
42 43 3.136009 AGTAAACTACAACAGGTGGGC 57.864 47.619 0.00 0.00 31.13 5.36
43 44 5.479124 ACTAGTAAACTACAACAGGTGGG 57.521 43.478 0.00 0.00 31.13 4.61
44 45 6.987992 TGAAACTAGTAAACTACAACAGGTGG 59.012 38.462 0.00 0.00 0.00 4.61
45 46 7.924412 TCTGAAACTAGTAAACTACAACAGGTG 59.076 37.037 0.00 0.00 0.00 4.00
46 47 8.015185 TCTGAAACTAGTAAACTACAACAGGT 57.985 34.615 0.00 0.00 0.00 4.00
47 48 9.141400 GATCTGAAACTAGTAAACTACAACAGG 57.859 37.037 0.00 0.00 0.00 4.00
48 49 8.851416 CGATCTGAAACTAGTAAACTACAACAG 58.149 37.037 0.00 0.00 0.00 3.16
49 50 7.327761 GCGATCTGAAACTAGTAAACTACAACA 59.672 37.037 0.00 0.00 0.00 3.33
50 51 7.541437 AGCGATCTGAAACTAGTAAACTACAAC 59.459 37.037 0.00 0.00 0.00 3.32
51 52 7.600065 AGCGATCTGAAACTAGTAAACTACAA 58.400 34.615 0.00 0.00 0.00 2.41
52 53 7.154435 AGCGATCTGAAACTAGTAAACTACA 57.846 36.000 0.00 0.00 0.00 2.74
53 54 8.463456 AAAGCGATCTGAAACTAGTAAACTAC 57.537 34.615 0.00 0.00 0.00 2.73
54 55 9.565213 GTAAAGCGATCTGAAACTAGTAAACTA 57.435 33.333 0.00 0.00 0.00 2.24
55 56 8.305317 AGTAAAGCGATCTGAAACTAGTAAACT 58.695 33.333 0.00 0.00 0.00 2.66
56 57 8.463456 AGTAAAGCGATCTGAAACTAGTAAAC 57.537 34.615 0.00 0.00 0.00 2.01
57 58 9.485206 AAAGTAAAGCGATCTGAAACTAGTAAA 57.515 29.630 0.00 0.00 0.00 2.01
58 59 9.136952 GAAAGTAAAGCGATCTGAAACTAGTAA 57.863 33.333 0.00 0.00 0.00 2.24
59 60 7.758528 GGAAAGTAAAGCGATCTGAAACTAGTA 59.241 37.037 0.00 0.00 0.00 1.82
60 61 6.590677 GGAAAGTAAAGCGATCTGAAACTAGT 59.409 38.462 0.00 0.00 0.00 2.57
61 62 6.814146 AGGAAAGTAAAGCGATCTGAAACTAG 59.186 38.462 0.00 0.00 0.00 2.57
62 63 6.590292 CAGGAAAGTAAAGCGATCTGAAACTA 59.410 38.462 0.00 0.00 0.00 2.24
63 64 5.409826 CAGGAAAGTAAAGCGATCTGAAACT 59.590 40.000 0.00 0.00 0.00 2.66
64 65 5.408604 TCAGGAAAGTAAAGCGATCTGAAAC 59.591 40.000 0.00 0.00 0.00 2.78
65 66 5.547465 TCAGGAAAGTAAAGCGATCTGAAA 58.453 37.500 0.00 0.00 0.00 2.69
66 67 5.147330 TCAGGAAAGTAAAGCGATCTGAA 57.853 39.130 0.00 0.00 0.00 3.02
67 68 4.801330 TCAGGAAAGTAAAGCGATCTGA 57.199 40.909 0.00 0.00 0.00 3.27
68 69 5.171476 TCTTCAGGAAAGTAAAGCGATCTG 58.829 41.667 0.00 0.00 36.31 2.90
69 70 5.407407 TCTTCAGGAAAGTAAAGCGATCT 57.593 39.130 0.00 0.00 36.31 2.75
70 71 6.313905 TCAATCTTCAGGAAAGTAAAGCGATC 59.686 38.462 0.00 0.00 36.31 3.69
71 72 6.173339 TCAATCTTCAGGAAAGTAAAGCGAT 58.827 36.000 0.00 0.00 36.31 4.58
72 73 5.547465 TCAATCTTCAGGAAAGTAAAGCGA 58.453 37.500 0.00 0.00 36.31 4.93
73 74 5.862924 TCAATCTTCAGGAAAGTAAAGCG 57.137 39.130 0.00 0.00 36.31 4.68
74 75 6.529477 GCATTCAATCTTCAGGAAAGTAAAGC 59.471 38.462 0.00 0.00 36.31 3.51
75 76 6.744537 CGCATTCAATCTTCAGGAAAGTAAAG 59.255 38.462 0.00 0.00 36.31 1.85
76 77 6.429692 TCGCATTCAATCTTCAGGAAAGTAAA 59.570 34.615 0.00 0.00 36.31 2.01
77 78 5.937540 TCGCATTCAATCTTCAGGAAAGTAA 59.062 36.000 0.00 0.00 36.31 2.24
78 79 5.487433 TCGCATTCAATCTTCAGGAAAGTA 58.513 37.500 0.00 0.00 36.31 2.24
79 80 4.326826 TCGCATTCAATCTTCAGGAAAGT 58.673 39.130 0.00 0.00 36.31 2.66
80 81 4.201891 CCTCGCATTCAATCTTCAGGAAAG 60.202 45.833 0.00 0.00 36.22 2.62
81 82 3.691118 CCTCGCATTCAATCTTCAGGAAA 59.309 43.478 0.00 0.00 0.00 3.13
82 83 3.273434 CCTCGCATTCAATCTTCAGGAA 58.727 45.455 0.00 0.00 0.00 3.36
83 84 2.910199 CCTCGCATTCAATCTTCAGGA 58.090 47.619 0.00 0.00 0.00 3.86
84 85 1.332997 GCCTCGCATTCAATCTTCAGG 59.667 52.381 0.00 0.00 0.00 3.86
85 86 2.286872 AGCCTCGCATTCAATCTTCAG 58.713 47.619 0.00 0.00 0.00 3.02
86 87 2.408271 AGCCTCGCATTCAATCTTCA 57.592 45.000 0.00 0.00 0.00 3.02
87 88 3.127548 TCAAAGCCTCGCATTCAATCTTC 59.872 43.478 0.00 0.00 0.00 2.87
88 89 3.084039 TCAAAGCCTCGCATTCAATCTT 58.916 40.909 0.00 0.00 0.00 2.40
89 90 2.681848 CTCAAAGCCTCGCATTCAATCT 59.318 45.455 0.00 0.00 0.00 2.40
90 91 2.421424 ACTCAAAGCCTCGCATTCAATC 59.579 45.455 0.00 0.00 0.00 2.67
91 92 2.421424 GACTCAAAGCCTCGCATTCAAT 59.579 45.455 0.00 0.00 0.00 2.57
92 93 1.806542 GACTCAAAGCCTCGCATTCAA 59.193 47.619 0.00 0.00 0.00 2.69
93 94 1.442769 GACTCAAAGCCTCGCATTCA 58.557 50.000 0.00 0.00 0.00 2.57
94 95 0.729690 GGACTCAAAGCCTCGCATTC 59.270 55.000 0.00 0.00 0.00 2.67
95 96 0.326264 AGGACTCAAAGCCTCGCATT 59.674 50.000 0.00 0.00 0.00 3.56
96 97 0.392193 CAGGACTCAAAGCCTCGCAT 60.392 55.000 0.00 0.00 30.41 4.73
97 98 1.004560 CAGGACTCAAAGCCTCGCA 60.005 57.895 0.00 0.00 30.41 5.10
98 99 1.743252 CCAGGACTCAAAGCCTCGC 60.743 63.158 0.00 0.00 30.41 5.03
99 100 0.390472 GTCCAGGACTCAAAGCCTCG 60.390 60.000 12.94 0.00 30.41 4.63
100 101 0.035915 GGTCCAGGACTCAAAGCCTC 60.036 60.000 19.57 0.00 32.47 4.70
101 102 0.474660 AGGTCCAGGACTCAAAGCCT 60.475 55.000 19.57 3.00 32.47 4.58
102 103 0.322008 CAGGTCCAGGACTCAAAGCC 60.322 60.000 19.57 0.38 32.47 4.35
103 104 0.322008 CCAGGTCCAGGACTCAAAGC 60.322 60.000 19.57 1.26 32.47 3.51
104 105 1.277557 CTCCAGGTCCAGGACTCAAAG 59.722 57.143 19.57 8.57 32.47 2.77
105 106 1.352083 CTCCAGGTCCAGGACTCAAA 58.648 55.000 19.57 2.69 32.47 2.69
106 107 0.191064 ACTCCAGGTCCAGGACTCAA 59.809 55.000 19.57 2.34 32.47 3.02
107 108 1.006043 CTACTCCAGGTCCAGGACTCA 59.994 57.143 19.57 0.29 32.47 3.41
108 109 1.006162 ACTACTCCAGGTCCAGGACTC 59.994 57.143 19.57 9.54 32.47 3.36
109 110 1.085715 ACTACTCCAGGTCCAGGACT 58.914 55.000 19.57 2.67 32.47 3.85
110 111 2.377073 GTACTACTCCAGGTCCAGGAC 58.623 57.143 11.70 11.70 0.00 3.85
111 112 1.287146 GGTACTACTCCAGGTCCAGGA 59.713 57.143 2.52 2.52 0.00 3.86
112 113 1.777941 GGTACTACTCCAGGTCCAGG 58.222 60.000 0.00 0.00 0.00 4.45
113 114 1.064906 TCGGTACTACTCCAGGTCCAG 60.065 57.143 0.00 0.00 0.00 3.86
114 115 0.994247 TCGGTACTACTCCAGGTCCA 59.006 55.000 0.00 0.00 0.00 4.02
115 116 1.677942 CTCGGTACTACTCCAGGTCC 58.322 60.000 0.00 0.00 0.00 4.46
116 117 1.677942 CCTCGGTACTACTCCAGGTC 58.322 60.000 0.00 0.00 0.00 3.85
117 118 0.258194 CCCTCGGTACTACTCCAGGT 59.742 60.000 0.00 0.00 0.00 4.00
118 119 0.467659 CCCCTCGGTACTACTCCAGG 60.468 65.000 0.00 0.00 0.00 4.45
119 120 0.258194 ACCCCTCGGTACTACTCCAG 59.742 60.000 0.00 0.00 42.18 3.86
120 121 0.033796 CACCCCTCGGTACTACTCCA 60.034 60.000 0.00 0.00 42.04 3.86
121 122 0.033699 ACACCCCTCGGTACTACTCC 60.034 60.000 0.00 0.00 42.04 3.85
122 123 1.064832 AGACACCCCTCGGTACTACTC 60.065 57.143 0.00 0.00 42.04 2.59
123 124 0.998145 AGACACCCCTCGGTACTACT 59.002 55.000 0.00 0.00 42.04 2.57
124 125 1.747924 GAAGACACCCCTCGGTACTAC 59.252 57.143 0.00 0.00 42.04 2.73
125 126 1.637553 AGAAGACACCCCTCGGTACTA 59.362 52.381 0.00 0.00 42.04 1.82
126 127 0.408700 AGAAGACACCCCTCGGTACT 59.591 55.000 0.00 0.00 42.04 2.73
127 128 0.816373 GAGAAGACACCCCTCGGTAC 59.184 60.000 0.00 0.00 42.04 3.34
128 129 0.702902 AGAGAAGACACCCCTCGGTA 59.297 55.000 0.00 0.00 42.04 4.02
129 130 0.900647 CAGAGAAGACACCCCTCGGT 60.901 60.000 0.00 0.00 46.31 4.69
130 131 0.612174 TCAGAGAAGACACCCCTCGG 60.612 60.000 0.00 0.00 32.52 4.63
131 132 1.203523 CTTCAGAGAAGACACCCCTCG 59.796 57.143 0.52 0.00 32.52 4.63
132 133 2.530701 TCTTCAGAGAAGACACCCCTC 58.469 52.381 5.41 0.00 0.00 4.30
133 134 2.704190 TCTTCAGAGAAGACACCCCT 57.296 50.000 5.41 0.00 0.00 4.79
134 135 3.677424 CGAATCTTCAGAGAAGACACCCC 60.677 52.174 11.28 0.39 35.07 4.95
135 136 3.193691 TCGAATCTTCAGAGAAGACACCC 59.806 47.826 11.28 1.85 35.07 4.61
136 137 4.170256 GTCGAATCTTCAGAGAAGACACC 58.830 47.826 11.28 3.93 36.14 4.16
157 158 6.534634 AGAAGTAGAAGTAAAGCAATGTGGT 58.465 36.000 0.00 0.00 0.00 4.16
158 159 6.876257 AGAGAAGTAGAAGTAAAGCAATGTGG 59.124 38.462 0.00 0.00 0.00 4.17
161 162 8.539770 TTCAGAGAAGTAGAAGTAAAGCAATG 57.460 34.615 0.00 0.00 0.00 2.82
165 166 8.868916 CAATCTTCAGAGAAGTAGAAGTAAAGC 58.131 37.037 6.65 0.00 39.69 3.51
187 188 2.421424 ACTCAAAGCCTCGCATTCAATC 59.579 45.455 0.00 0.00 0.00 2.67
199 200 1.155042 CAGCTCAGTGACTCAAAGCC 58.845 55.000 7.34 0.00 33.43 4.35
207 208 1.471676 CGGGGTAATCAGCTCAGTGAC 60.472 57.143 0.00 0.00 0.00 3.67
247 248 9.570488 GTCCGTCATCTATATTACATAAACTCC 57.430 37.037 0.00 0.00 0.00 3.85
254 255 7.400339 AGAATGGGTCCGTCATCTATATTACAT 59.600 37.037 0.00 0.00 0.00 2.29
270 271 6.015434 ACAATTCAAACAACTAGAATGGGTCC 60.015 38.462 0.00 0.00 32.69 4.46
384 388 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
385 389 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
386 390 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
387 391 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
388 392 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
389 393 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
390 394 3.061322 TGTTGACAAGTATTTCCGGACG 58.939 45.455 1.83 0.00 0.00 4.79
391 395 5.427036 TTTGTTGACAAGTATTTCCGGAC 57.573 39.130 1.83 0.00 37.15 4.79
392 396 6.039941 ACATTTTGTTGACAAGTATTTCCGGA 59.960 34.615 0.00 0.00 37.15 5.14
393 397 6.212955 ACATTTTGTTGACAAGTATTTCCGG 58.787 36.000 0.00 0.00 37.15 5.14
394 398 8.849490 CATACATTTTGTTGACAAGTATTTCCG 58.151 33.333 0.00 0.00 37.15 4.30
395 399 9.906660 TCATACATTTTGTTGACAAGTATTTCC 57.093 29.630 0.00 0.00 37.15 3.13
401 405 9.044150 CCATTTTCATACATTTTGTTGACAAGT 57.956 29.630 0.00 0.00 37.15 3.16
402 406 9.258826 TCCATTTTCATACATTTTGTTGACAAG 57.741 29.630 0.00 0.00 37.15 3.16
403 407 9.775854 ATCCATTTTCATACATTTTGTTGACAA 57.224 25.926 0.00 0.00 0.00 3.18
404 408 9.205719 CATCCATTTTCATACATTTTGTTGACA 57.794 29.630 0.00 0.00 0.00 3.58
405 409 9.206870 ACATCCATTTTCATACATTTTGTTGAC 57.793 29.630 0.00 0.00 0.00 3.18
447 451 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
448 452 9.498176 TGTCATTGAAATGGATGTATCTAGATG 57.502 33.333 15.79 0.00 37.03 2.90
450 454 9.551734 CTTGTCATTGAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 37.03 2.43
451 455 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
453 457 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
457 461 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
458 462 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
459 463 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
460 464 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
461 465 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
462 466 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
463 467 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
464 468 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
465 469 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
466 470 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
467 471 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
468 472 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
469 473 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
470 474 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
471 475 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
472 476 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
473 477 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
474 478 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
475 479 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
476 480 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
477 481 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
478 482 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
479 483 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
480 484 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
481 485 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
482 486 0.107017 TTAGTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
483 487 1.978454 ATTAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
484 488 4.468713 ACTTATTAGTACTCCCTCCGTCC 58.531 47.826 0.00 0.00 31.21 4.79
485 489 5.591877 TCAACTTATTAGTACTCCCTCCGTC 59.408 44.000 0.00 0.00 33.17 4.79
486 490 5.513233 TCAACTTATTAGTACTCCCTCCGT 58.487 41.667 0.00 0.00 33.17 4.69
487 491 5.009811 CCTCAACTTATTAGTACTCCCTCCG 59.990 48.000 0.00 0.00 33.17 4.63
488 492 6.134754 TCCTCAACTTATTAGTACTCCCTCC 58.865 44.000 0.00 0.00 33.17 4.30
489 493 7.657023 TTCCTCAACTTATTAGTACTCCCTC 57.343 40.000 0.00 0.00 33.17 4.30
490 494 8.445361 TTTTCCTCAACTTATTAGTACTCCCT 57.555 34.615 0.00 0.00 33.17 4.20
556 560 1.524355 CGCGATGCCAACTATCTTGAG 59.476 52.381 0.00 0.00 0.00 3.02
631 635 8.616076 GCGGTAACTACTTAGTAAAGATCACTA 58.384 37.037 0.00 0.00 34.99 2.74
644 766 4.678840 GCCTTTGCTAGCGGTAACTACTTA 60.679 45.833 10.77 0.00 33.53 2.24
645 767 3.858247 CCTTTGCTAGCGGTAACTACTT 58.142 45.455 10.77 0.00 0.00 2.24
646 768 2.418334 GCCTTTGCTAGCGGTAACTACT 60.418 50.000 10.77 0.00 33.53 2.57
647 769 1.931841 GCCTTTGCTAGCGGTAACTAC 59.068 52.381 10.77 0.00 33.53 2.73
809 3197 1.210931 CTGCCAGCAAACGACCATG 59.789 57.895 0.00 0.00 0.00 3.66
956 3351 6.779860 AGGAAAACATAGTACAACACAGGAT 58.220 36.000 0.00 0.00 0.00 3.24
1004 3399 1.610522 GAAACAAGCTGCCATGAGTGT 59.389 47.619 9.67 0.00 0.00 3.55
1084 3497 3.877559 CAGAGGATGCAGGAATGTGTAA 58.122 45.455 0.00 0.00 0.00 2.41
1134 3547 1.278637 GACACCGCAAACAAGTCCG 59.721 57.895 0.00 0.00 0.00 4.79
1318 3731 8.934023 TGGGAAATTGTGAATCTAACTAAAGT 57.066 30.769 0.00 0.00 0.00 2.66
1397 3810 4.081862 TGTTGGTTCTGATACTAACTCCGG 60.082 45.833 0.00 0.00 39.42 5.14
1604 4017 0.108138 ACAGTAACGGCCATGAGCTC 60.108 55.000 6.82 6.82 43.05 4.09
1614 4027 6.628185 AGGAACTAACTCATAACAGTAACGG 58.372 40.000 0.00 0.00 36.02 4.44
1675 4088 0.260816 TCCCCGCTAGACCAGTATGT 59.739 55.000 0.00 0.00 0.00 2.29
1986 4399 4.428294 TCTTATGGAGAAGCCCTTCATG 57.572 45.455 10.37 0.00 41.22 3.07
2127 4541 2.163010 AGCATTCTGAGGCAATTTCACG 59.837 45.455 6.24 0.00 34.36 4.35
2266 4683 5.860182 CAGCATCCTGTTGTTTTACATTGAG 59.140 40.000 0.00 0.00 34.31 3.02
2267 4684 5.534278 TCAGCATCCTGTTGTTTTACATTGA 59.466 36.000 0.00 0.00 40.09 2.57
2268 4685 5.630680 GTCAGCATCCTGTTGTTTTACATTG 59.369 40.000 0.00 0.00 40.09 2.82
2284 4701 1.067846 TGTGTCCGTAGTGTCAGCATC 60.068 52.381 0.00 0.00 0.00 3.91
2298 4715 1.888512 ACTGCACCATCATTTGTGTCC 59.111 47.619 0.00 0.00 34.94 4.02
2497 4914 2.990066 ATTCCACCGTCTTGAGGATC 57.010 50.000 0.00 0.00 0.00 3.36
2614 5034 1.621317 TGCCATTGTAACCGAGTCAGA 59.379 47.619 0.00 0.00 0.00 3.27
2692 5112 5.364446 TGATATGTTGTATAACCCCGACTGT 59.636 40.000 0.00 0.00 35.92 3.55
3088 5514 2.482721 AGCCGTAAACATCGACTTTTGG 59.517 45.455 0.00 0.00 0.00 3.28
3351 5777 3.057174 CCTCTAGAGCACGAACAACTTCT 60.057 47.826 14.73 0.00 0.00 2.85
3364 5790 5.179452 AGATCAGATAGACCCTCTAGAGC 57.821 47.826 14.73 0.83 31.67 4.09
3626 6074 8.664798 TCTGACGAATTTTATTTCATACCTGTG 58.335 33.333 0.00 0.00 0.00 3.66
3627 6075 8.786826 TCTGACGAATTTTATTTCATACCTGT 57.213 30.769 0.00 0.00 0.00 4.00
3702 6151 3.655276 AGAGCAGCCAGAACAAAAATG 57.345 42.857 0.00 0.00 0.00 2.32
3703 6152 4.677673 AAAGAGCAGCCAGAACAAAAAT 57.322 36.364 0.00 0.00 0.00 1.82
3716 6165 2.470257 CGAAGCAAAGCAAAAAGAGCAG 59.530 45.455 0.00 0.00 0.00 4.24
3745 6194 2.912771 TCCAGTGAAGAAGCGAACAAA 58.087 42.857 0.00 0.00 0.00 2.83
3768 6217 4.598406 TCATGAAACGATGCACACATAC 57.402 40.909 0.00 0.00 36.35 2.39
4009 6458 4.890088 TGATACAGTAGAAAAGCACCGTT 58.110 39.130 0.00 0.00 0.00 4.44
4020 6470 4.450082 AACGTGCACATGATACAGTAGA 57.550 40.909 18.64 0.00 0.00 2.59
4025 6475 1.198867 GCCAAACGTGCACATGATACA 59.801 47.619 18.64 0.00 0.00 2.29
4147 6604 9.080915 GCACTTTTCATTCTATTTGAGGATTTC 57.919 33.333 0.00 0.00 0.00 2.17
4161 6618 2.223135 GCCGCTCTAGCACTTTTCATTC 60.223 50.000 2.44 0.00 42.21 2.67
4206 6663 6.038825 GCTATCTAAGCGAGGCTAATCATAGA 59.961 42.308 0.00 0.00 42.53 1.98
4409 9315 4.523083 ACGTACATTCATTGGGCACTAAT 58.477 39.130 0.00 0.00 41.23 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.