Multiple sequence alignment - TraesCS2A01G300300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G300300 chr2A 100.000 3648 0 0 1 3648 516023495 516027142 0.000000e+00 6737.0
1 TraesCS2A01G300300 chr2A 91.477 176 14 1 2989 3164 161284584 161284758 1.310000e-59 241.0
2 TraesCS2A01G300300 chr2A 92.771 166 12 0 2989 3154 772325367 772325532 1.310000e-59 241.0
3 TraesCS2A01G300300 chr2A 90.533 169 15 1 2987 3154 24647972 24647804 4.740000e-54 222.0
4 TraesCS2A01G300300 chr2A 90.533 169 15 1 2987 3154 24676038 24675870 4.740000e-54 222.0
5 TraesCS2A01G300300 chr2A 90.533 169 15 1 2987 3154 24689786 24689618 4.740000e-54 222.0
6 TraesCS2A01G300300 chr2A 90.533 169 15 1 2987 3154 25660872 25661040 4.740000e-54 222.0
7 TraesCS2A01G300300 chr2B 90.036 2740 148 54 13 2700 451889307 451891973 0.000000e+00 3432.0
8 TraesCS2A01G300300 chr2B 91.250 400 26 2 3258 3648 451892140 451892539 1.490000e-148 536.0
9 TraesCS2A01G300300 chr2B 90.476 105 8 2 2885 2989 451891965 451892067 1.770000e-28 137.0
10 TraesCS2A01G300300 chr2D 95.859 966 36 2 1737 2698 380577853 380578818 0.000000e+00 1559.0
11 TraesCS2A01G300300 chr2D 86.406 868 48 29 423 1249 380576510 380577348 0.000000e+00 885.0
12 TraesCS2A01G300300 chr2D 95.810 358 15 0 1321 1678 380577393 380577750 2.440000e-161 579.0
13 TraesCS2A01G300300 chr2D 89.418 378 26 2 1 377 380575914 380576278 7.140000e-127 464.0
14 TraesCS2A01G300300 chr2D 91.925 322 22 2 3258 3575 380578977 380579298 7.190000e-122 448.0
15 TraesCS2A01G300300 chr2D 92.553 94 7 0 3152 3245 380578900 380578993 6.350000e-28 135.0
16 TraesCS2A01G300300 chr4A 86.128 1175 102 30 1526 2662 35151509 35152660 0.000000e+00 1210.0
17 TraesCS2A01G300300 chr4A 91.866 209 14 3 2685 2891 519575474 519575681 4.610000e-74 289.0
18 TraesCS2A01G300300 chr4A 92.537 201 14 1 2693 2893 544173346 544173545 1.660000e-73 287.0
19 TraesCS2A01G300300 chr4A 92.771 166 12 0 2989 3154 66896643 66896478 1.310000e-59 241.0
20 TraesCS2A01G300300 chr4D 85.947 1167 116 23 1526 2664 433699906 433701052 0.000000e+00 1203.0
21 TraesCS2A01G300300 chr4D 92.611 203 14 1 2694 2896 62231214 62231415 1.280000e-74 291.0
22 TraesCS2A01G300300 chr4D 88.235 153 11 7 1340 1492 433699677 433699822 3.740000e-40 176.0
23 TraesCS2A01G300300 chr4B 85.873 1168 115 25 1526 2662 532255836 532256984 0.000000e+00 1197.0
24 TraesCS2A01G300300 chr6A 93.171 205 12 2 2697 2899 36704441 36704645 2.130000e-77 300.0
25 TraesCS2A01G300300 chr6A 94.681 188 10 0 2699 2886 7988457 7988644 3.560000e-75 292.0
26 TraesCS2A01G300300 chr6A 89.535 172 16 2 2985 3154 607993028 607993199 2.210000e-52 217.0
27 TraesCS2A01G300300 chr5A 92.718 206 14 1 2690 2895 475465617 475465413 2.750000e-76 296.0
28 TraesCS2A01G300300 chr3A 93.814 194 10 2 2700 2893 11688674 11688865 1.280000e-74 291.0
29 TraesCS2A01G300300 chr3A 93.814 194 10 2 2700 2893 11714009 11714200 1.280000e-74 291.0
30 TraesCS2A01G300300 chr7A 92.233 206 12 4 2690 2893 116619315 116619518 4.610000e-74 289.0
31 TraesCS2A01G300300 chrUn 90.533 169 15 1 2987 3154 417217029 417217197 4.740000e-54 222.0
32 TraesCS2A01G300300 chrUn 96.970 33 0 1 2515 2547 241922805 241922836 2.000000e-03 54.7
33 TraesCS2A01G300300 chr1A 78.182 275 54 6 21 292 4688829 4689100 1.740000e-38 171.0
34 TraesCS2A01G300300 chr1D 79.828 233 42 5 24 253 4989583 4989353 8.100000e-37 165.0
35 TraesCS2A01G300300 chr7B 96.970 33 0 1 2515 2547 654493528 654493497 2.000000e-03 54.7
36 TraesCS2A01G300300 chr7B 96.970 33 0 1 2515 2547 654507667 654507636 2.000000e-03 54.7
37 TraesCS2A01G300300 chr7B 96.970 33 0 1 2515 2547 654697193 654697162 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G300300 chr2A 516023495 516027142 3647 False 6737.000000 6737 100.000000 1 3648 1 chr2A.!!$F3 3647
1 TraesCS2A01G300300 chr2B 451889307 451892539 3232 False 1368.333333 3432 90.587333 13 3648 3 chr2B.!!$F1 3635
2 TraesCS2A01G300300 chr2D 380575914 380579298 3384 False 678.333333 1559 91.995167 1 3575 6 chr2D.!!$F1 3574
3 TraesCS2A01G300300 chr4A 35151509 35152660 1151 False 1210.000000 1210 86.128000 1526 2662 1 chr4A.!!$F1 1136
4 TraesCS2A01G300300 chr4D 433699677 433701052 1375 False 689.500000 1203 87.091000 1340 2664 2 chr4D.!!$F2 1324
5 TraesCS2A01G300300 chr4B 532255836 532256984 1148 False 1197.000000 1197 85.873000 1526 2662 1 chr4B.!!$F1 1136

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 773 0.581529 TTGACTTGCGCTGACTTTCG 59.418 50.0 9.73 0.0 0.00 3.46 F
1299 1532 0.103208 GATAGCCAGTGACGAGTGGG 59.897 60.0 0.00 0.0 42.43 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 2740 0.248661 CTCATGACCGCGACGAAGAT 60.249 55.0 8.23 0.00 0.00 2.40 R
2864 3276 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.0 18.92 18.25 46.66 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.555069 CGTGATCGTACACAACATGATCATG 60.555 44.000 29.95 29.95 45.45 3.07
148 150 3.550678 GGCGTACCTAAAGATTGAAGACG 59.449 47.826 0.00 0.00 0.00 4.18
171 173 4.914983 AGAGCTCCAATGATCAACTGAAA 58.085 39.130 10.93 0.00 0.00 2.69
407 588 7.553881 ACCACATTATAGTGACTGTTATTGC 57.446 36.000 1.74 0.00 42.05 3.56
408 589 7.109501 ACCACATTATAGTGACTGTTATTGCA 58.890 34.615 1.74 0.00 42.05 4.08
413 594 7.980742 TTATAGTGACTGTTATTGCACGTAG 57.019 36.000 0.00 0.00 36.43 3.51
414 595 2.993899 AGTGACTGTTATTGCACGTAGC 59.006 45.455 0.00 0.00 45.96 3.58
415 596 2.093783 GTGACTGTTATTGCACGTAGCC 59.906 50.000 7.38 0.00 44.83 3.93
416 597 2.289133 TGACTGTTATTGCACGTAGCCA 60.289 45.455 7.38 0.00 44.83 4.75
417 598 2.936498 GACTGTTATTGCACGTAGCCAT 59.064 45.455 7.38 5.06 44.83 4.40
420 601 2.093181 TGTTATTGCACGTAGCCATCCT 60.093 45.455 7.38 0.00 44.83 3.24
427 615 1.931172 CACGTAGCCATCCTTTAACCG 59.069 52.381 0.00 0.00 0.00 4.44
445 633 5.446143 AACCGTCAAAACATTATGAAGCA 57.554 34.783 0.00 0.00 0.00 3.91
515 703 2.260844 TGTTTGTCTTGCCCTCTCTG 57.739 50.000 0.00 0.00 0.00 3.35
541 729 2.922758 GCGTATATGGCAGAGTTCCTCG 60.923 54.545 0.00 0.00 35.36 4.63
557 745 3.963665 TCCTCGTGTCAAAATTTTGCAG 58.036 40.909 23.36 16.67 38.05 4.41
564 752 4.032786 GTGTCAAAATTTTGCAGTCACCAC 59.967 41.667 23.36 14.77 38.05 4.16
585 773 0.581529 TTGACTTGCGCTGACTTTCG 59.418 50.000 9.73 0.00 0.00 3.46
592 780 4.344865 GCTGACTTTCGGCCCCCA 62.345 66.667 0.00 0.00 42.80 4.96
594 782 1.000896 CTGACTTTCGGCCCCCATT 60.001 57.895 0.00 0.00 0.00 3.16
595 783 1.304052 TGACTTTCGGCCCCCATTG 60.304 57.895 0.00 0.00 0.00 2.82
596 784 1.001393 GACTTTCGGCCCCCATTGA 60.001 57.895 0.00 0.00 0.00 2.57
597 785 0.610785 GACTTTCGGCCCCCATTGAA 60.611 55.000 0.00 0.00 0.00 2.69
598 786 0.611896 ACTTTCGGCCCCCATTGAAG 60.612 55.000 0.00 0.00 0.00 3.02
600 788 4.794648 TCGGCCCCCATTGAAGCG 62.795 66.667 0.00 0.00 0.00 4.68
601 789 4.794648 CGGCCCCCATTGAAGCGA 62.795 66.667 0.00 0.00 0.00 4.93
648 841 7.276438 GCCCTTGAAGCTTATTTTACATTTCTG 59.724 37.037 0.00 0.00 0.00 3.02
710 903 1.070577 CAGCTTTCCAAGACGACGTTG 60.071 52.381 0.13 0.00 0.00 4.10
779 982 1.336702 CGCTATGATCTGAGGTCAGCC 60.337 57.143 0.52 0.00 43.46 4.85
827 1030 0.726827 CGGATTCCATCGGTGTTGTG 59.273 55.000 3.09 0.00 0.00 3.33
828 1031 1.821216 GGATTCCATCGGTGTTGTGT 58.179 50.000 0.00 0.00 0.00 3.72
829 1032 2.159382 GGATTCCATCGGTGTTGTGTT 58.841 47.619 0.00 0.00 0.00 3.32
830 1033 2.095263 GGATTCCATCGGTGTTGTGTTG 60.095 50.000 0.00 0.00 0.00 3.33
831 1034 2.045561 TTCCATCGGTGTTGTGTTGT 57.954 45.000 0.00 0.00 0.00 3.32
841 1044 1.615883 TGTTGTGTTGTTGTTGCAGGT 59.384 42.857 0.00 0.00 0.00 4.00
842 1045 2.036475 TGTTGTGTTGTTGTTGCAGGTT 59.964 40.909 0.00 0.00 0.00 3.50
843 1046 2.360553 TGTGTTGTTGTTGCAGGTTG 57.639 45.000 0.00 0.00 0.00 3.77
844 1047 0.998669 GTGTTGTTGTTGCAGGTTGC 59.001 50.000 0.00 0.00 45.29 4.17
854 1057 4.263572 CAGGTTGCGGGACACCCA 62.264 66.667 7.62 0.00 45.83 4.51
855 1058 3.256960 AGGTTGCGGGACACCCAT 61.257 61.111 7.62 0.00 45.83 4.00
856 1059 2.750237 GGTTGCGGGACACCCATC 60.750 66.667 7.62 0.00 45.83 3.51
857 1060 2.351276 GTTGCGGGACACCCATCT 59.649 61.111 7.62 0.00 45.83 2.90
901 1104 1.776662 TGGCTAACATCGCTAGGAGT 58.223 50.000 0.00 0.00 0.00 3.85
903 1106 2.885266 TGGCTAACATCGCTAGGAGTAG 59.115 50.000 0.00 0.00 0.00 2.57
904 1107 2.229302 GGCTAACATCGCTAGGAGTAGG 59.771 54.545 0.00 0.00 0.00 3.18
905 1108 3.147629 GCTAACATCGCTAGGAGTAGGA 58.852 50.000 0.00 0.00 0.00 2.94
911 1114 1.775459 TCGCTAGGAGTAGGAGGACAT 59.225 52.381 0.00 0.00 0.00 3.06
918 1121 7.389330 CGCTAGGAGTAGGAGGACATATATATG 59.611 44.444 19.21 19.21 39.55 1.78
922 1125 6.041069 GGAGTAGGAGGACATATATATGCACC 59.959 46.154 20.46 21.31 37.19 5.01
927 1130 7.883823 AGGAGGACATATATATGCACCTACTA 58.116 38.462 31.75 0.00 44.89 1.82
942 1149 6.209986 TGCACCTACTACTACTTGTGTACATT 59.790 38.462 0.00 0.00 0.00 2.71
943 1150 6.750963 GCACCTACTACTACTTGTGTACATTC 59.249 42.308 0.00 0.00 0.00 2.67
944 1151 7.362747 GCACCTACTACTACTTGTGTACATTCT 60.363 40.741 0.00 0.00 0.00 2.40
945 1152 8.182881 CACCTACTACTACTTGTGTACATTCTC 58.817 40.741 0.00 0.00 0.00 2.87
946 1153 7.065563 ACCTACTACTACTTGTGTACATTCTCG 59.934 40.741 0.00 0.00 0.00 4.04
947 1154 6.814506 ACTACTACTTGTGTACATTCTCGT 57.185 37.500 0.00 0.00 0.00 4.18
948 1155 6.609533 ACTACTACTTGTGTACATTCTCGTG 58.390 40.000 0.00 0.00 0.00 4.35
949 1156 4.235360 ACTACTTGTGTACATTCTCGTGC 58.765 43.478 0.00 0.00 0.00 5.34
950 1157 3.106242 ACTTGTGTACATTCTCGTGCA 57.894 42.857 0.00 0.00 0.00 4.57
969 1176 2.494445 CTGGTCGGACGCATGCTA 59.506 61.111 17.13 0.00 0.00 3.49
971 1178 2.284798 CTGGTCGGACGCATGCTAGT 62.285 60.000 17.13 7.07 0.00 2.57
1104 1336 2.614520 CCTGCAGATCTTCATCAAGCTG 59.385 50.000 17.39 0.00 34.85 4.24
1292 1525 2.898705 CCTCACAAGATAGCCAGTGAC 58.101 52.381 0.00 0.00 36.20 3.67
1299 1532 0.103208 GATAGCCAGTGACGAGTGGG 59.897 60.000 0.00 0.00 42.43 4.61
1481 1732 2.992593 TGGCGACCATGTTAGCAAATA 58.007 42.857 0.00 0.00 0.00 1.40
1517 1768 6.925718 TGTGTTTGTGTTTTGTTCTTTGATCA 59.074 30.769 0.00 0.00 0.00 2.92
1519 1770 7.739911 GTGTTTGTGTTTTGTTCTTTGATCAAC 59.260 33.333 7.89 0.00 0.00 3.18
1542 1860 4.497006 CCGAAGAAATGCAGAATCACCATC 60.497 45.833 0.00 0.00 0.00 3.51
1587 1905 1.710013 TCAAGCTCACGAATTCGACC 58.290 50.000 33.05 16.88 43.02 4.79
1608 1926 1.508545 CATCGTCACGGCTCTCAGT 59.491 57.895 0.00 0.00 0.00 3.41
1700 2029 5.012239 TCTCATTTTCTTTCTGGATGGTGG 58.988 41.667 0.00 0.00 0.00 4.61
1701 2030 4.739793 TCATTTTCTTTCTGGATGGTGGT 58.260 39.130 0.00 0.00 0.00 4.16
1702 2031 4.766891 TCATTTTCTTTCTGGATGGTGGTC 59.233 41.667 0.00 0.00 0.00 4.02
1703 2032 4.453480 TTTTCTTTCTGGATGGTGGTCT 57.547 40.909 0.00 0.00 0.00 3.85
1704 2033 5.576563 TTTTCTTTCTGGATGGTGGTCTA 57.423 39.130 0.00 0.00 0.00 2.59
1705 2034 4.553330 TTCTTTCTGGATGGTGGTCTAC 57.447 45.455 0.00 0.00 0.00 2.59
1706 2035 3.791320 TCTTTCTGGATGGTGGTCTACT 58.209 45.455 0.00 0.00 0.00 2.57
1709 2038 2.739943 TCTGGATGGTGGTCTACTCTG 58.260 52.381 0.00 0.00 0.00 3.35
2179 2559 3.381212 CGGCGTACGCGGTAATCG 61.381 66.667 32.22 24.85 43.06 3.34
2190 2570 1.227853 GGTAATCGGGCGGCTGATT 60.228 57.895 38.10 38.10 38.34 2.57
2209 2593 0.464373 TGATCGGCCATTGCTTCCTC 60.464 55.000 2.24 0.00 37.74 3.71
2238 2622 3.231734 CCACGTTTCTCATGGCTGA 57.768 52.632 0.00 0.00 0.00 4.26
2241 2625 2.096496 CCACGTTTCTCATGGCTGATTC 59.904 50.000 0.00 0.00 0.00 2.52
2242 2626 2.096496 CACGTTTCTCATGGCTGATTCC 59.904 50.000 0.00 0.00 0.00 3.01
2353 2740 2.456577 TGTTCGGACCTCTCATCATCA 58.543 47.619 0.00 0.00 0.00 3.07
2440 2830 1.737838 TTAACTCGCATGCCTTGAGG 58.262 50.000 20.64 4.17 34.03 3.86
2680 3092 7.645058 AAATAAGATCATGGGTACACTTTGG 57.355 36.000 0.00 0.00 0.00 3.28
2691 3103 3.821033 GGTACACTTTGGCAGTCAAGATT 59.179 43.478 4.50 0.00 36.62 2.40
2692 3104 4.278419 GGTACACTTTGGCAGTCAAGATTT 59.722 41.667 4.50 0.00 36.62 2.17
2693 3105 5.221244 GGTACACTTTGGCAGTCAAGATTTT 60.221 40.000 4.50 0.00 36.62 1.82
2694 3106 4.936891 ACACTTTGGCAGTCAAGATTTTC 58.063 39.130 4.50 0.00 36.62 2.29
2695 3107 4.646492 ACACTTTGGCAGTCAAGATTTTCT 59.354 37.500 4.50 0.00 36.62 2.52
2696 3108 5.127682 ACACTTTGGCAGTCAAGATTTTCTT 59.872 36.000 4.50 0.00 32.55 2.52
2697 3109 6.044682 CACTTTGGCAGTCAAGATTTTCTTT 58.955 36.000 4.50 0.00 30.68 2.52
2698 3110 7.147915 ACACTTTGGCAGTCAAGATTTTCTTTA 60.148 33.333 4.50 0.00 30.68 1.85
2699 3111 7.869429 CACTTTGGCAGTCAAGATTTTCTTTAT 59.131 33.333 4.50 0.00 30.68 1.40
2700 3112 8.084684 ACTTTGGCAGTCAAGATTTTCTTTATC 58.915 33.333 4.50 0.00 33.78 1.75
2701 3113 7.523293 TTGGCAGTCAAGATTTTCTTTATCA 57.477 32.000 0.00 0.00 33.78 2.15
2702 3114 7.149569 TGGCAGTCAAGATTTTCTTTATCAG 57.850 36.000 0.00 0.00 33.78 2.90
2703 3115 6.716628 TGGCAGTCAAGATTTTCTTTATCAGT 59.283 34.615 0.00 0.00 33.78 3.41
2704 3116 7.231317 TGGCAGTCAAGATTTTCTTTATCAGTT 59.769 33.333 0.00 0.00 33.78 3.16
2705 3117 8.084684 GGCAGTCAAGATTTTCTTTATCAGTTT 58.915 33.333 0.00 0.00 33.78 2.66
2706 3118 9.468532 GCAGTCAAGATTTTCTTTATCAGTTTT 57.531 29.630 0.00 0.00 33.78 2.43
2708 3120 9.468532 AGTCAAGATTTTCTTTATCAGTTTTGC 57.531 29.630 0.00 0.00 33.78 3.68
2709 3121 9.468532 GTCAAGATTTTCTTTATCAGTTTTGCT 57.531 29.630 0.00 0.00 33.78 3.91
2740 3152 6.625362 CATCTAGATGTGCCATAAGTATCGT 58.375 40.000 22.42 0.00 34.23 3.73
2741 3153 7.762382 CATCTAGATGTGCCATAAGTATCGTA 58.238 38.462 22.42 0.00 34.23 3.43
2742 3154 7.142306 TCTAGATGTGCCATAAGTATCGTAC 57.858 40.000 0.00 0.00 0.00 3.67
2743 3155 5.784578 AGATGTGCCATAAGTATCGTACA 57.215 39.130 0.00 0.00 0.00 2.90
2744 3156 6.346477 AGATGTGCCATAAGTATCGTACAT 57.654 37.500 0.61 0.61 34.18 2.29
2745 3157 6.390721 AGATGTGCCATAAGTATCGTACATC 58.609 40.000 14.71 14.71 42.52 3.06
2746 3158 5.784578 TGTGCCATAAGTATCGTACATCT 57.215 39.130 0.00 0.00 0.00 2.90
2747 3159 6.887626 TGTGCCATAAGTATCGTACATCTA 57.112 37.500 0.00 0.00 0.00 1.98
2748 3160 7.279750 TGTGCCATAAGTATCGTACATCTAA 57.720 36.000 0.00 0.00 0.00 2.10
2749 3161 7.368059 TGTGCCATAAGTATCGTACATCTAAG 58.632 38.462 0.00 0.00 0.00 2.18
2750 3162 7.013942 TGTGCCATAAGTATCGTACATCTAAGT 59.986 37.037 0.00 0.00 0.00 2.24
2751 3163 7.537991 GTGCCATAAGTATCGTACATCTAAGTC 59.462 40.741 0.00 0.00 0.00 3.01
2752 3164 7.028361 GCCATAAGTATCGTACATCTAAGTCC 58.972 42.308 0.00 0.00 0.00 3.85
2753 3165 7.094291 GCCATAAGTATCGTACATCTAAGTCCT 60.094 40.741 0.00 0.00 0.00 3.85
2754 3166 9.445878 CCATAAGTATCGTACATCTAAGTCCTA 57.554 37.037 0.00 0.00 0.00 2.94
2763 3175 9.734984 TCGTACATCTAAGTCCTATATCATTGA 57.265 33.333 0.00 0.00 0.00 2.57
2794 3206 9.396022 ACATTAAGATTCGTGTGGATATTTTCT 57.604 29.630 0.00 0.00 0.00 2.52
2799 3211 8.567285 AGATTCGTGTGGATATTTTCTTTTCT 57.433 30.769 0.00 0.00 0.00 2.52
2800 3212 9.014297 AGATTCGTGTGGATATTTTCTTTTCTT 57.986 29.630 0.00 0.00 0.00 2.52
2801 3213 9.626045 GATTCGTGTGGATATTTTCTTTTCTTT 57.374 29.630 0.00 0.00 0.00 2.52
2802 3214 9.981114 ATTCGTGTGGATATTTTCTTTTCTTTT 57.019 25.926 0.00 0.00 0.00 2.27
2803 3215 9.810545 TTCGTGTGGATATTTTCTTTTCTTTTT 57.189 25.926 0.00 0.00 0.00 1.94
2824 3236 6.966435 TTTTTCTTTTCCTCTTTGTGCTTG 57.034 33.333 0.00 0.00 0.00 4.01
2825 3237 5.913137 TTTCTTTTCCTCTTTGTGCTTGA 57.087 34.783 0.00 0.00 0.00 3.02
2826 3238 6.469782 TTTCTTTTCCTCTTTGTGCTTGAT 57.530 33.333 0.00 0.00 0.00 2.57
2827 3239 6.469782 TTCTTTTCCTCTTTGTGCTTGATT 57.530 33.333 0.00 0.00 0.00 2.57
2828 3240 6.076981 TCTTTTCCTCTTTGTGCTTGATTC 57.923 37.500 0.00 0.00 0.00 2.52
2829 3241 5.593909 TCTTTTCCTCTTTGTGCTTGATTCA 59.406 36.000 0.00 0.00 0.00 2.57
2830 3242 4.836125 TTCCTCTTTGTGCTTGATTCAC 57.164 40.909 0.00 0.00 35.14 3.18
2831 3243 4.090761 TCCTCTTTGTGCTTGATTCACT 57.909 40.909 0.00 0.00 35.58 3.41
2832 3244 4.067896 TCCTCTTTGTGCTTGATTCACTC 58.932 43.478 0.00 0.00 35.58 3.51
2833 3245 3.817084 CCTCTTTGTGCTTGATTCACTCA 59.183 43.478 0.00 0.00 35.58 3.41
2834 3246 4.320057 CCTCTTTGTGCTTGATTCACTCAC 60.320 45.833 9.39 9.39 35.58 3.51
2835 3247 4.454678 TCTTTGTGCTTGATTCACTCACT 58.545 39.130 14.71 0.00 35.58 3.41
2836 3248 4.883585 TCTTTGTGCTTGATTCACTCACTT 59.116 37.500 14.71 0.00 35.58 3.16
2837 3249 6.054941 TCTTTGTGCTTGATTCACTCACTTA 58.945 36.000 14.71 4.85 35.58 2.24
2838 3250 6.712095 TCTTTGTGCTTGATTCACTCACTTAT 59.288 34.615 14.71 0.00 35.58 1.73
2839 3251 7.877612 TCTTTGTGCTTGATTCACTCACTTATA 59.122 33.333 14.71 0.00 35.58 0.98
2840 3252 8.565896 TTTGTGCTTGATTCACTCACTTATAT 57.434 30.769 14.71 0.00 35.58 0.86
2841 3253 7.543947 TGTGCTTGATTCACTCACTTATATG 57.456 36.000 14.71 0.00 35.58 1.78
2842 3254 7.105588 TGTGCTTGATTCACTCACTTATATGT 58.894 34.615 14.71 0.00 35.58 2.29
2843 3255 7.064966 TGTGCTTGATTCACTCACTTATATGTG 59.935 37.037 11.58 11.58 35.58 3.21
2844 3256 6.037500 TGCTTGATTCACTCACTTATATGTGC 59.962 38.462 12.71 0.19 37.81 4.57
2845 3257 6.037500 GCTTGATTCACTCACTTATATGTGCA 59.962 38.462 12.71 2.45 37.81 4.57
2846 3258 7.414429 GCTTGATTCACTCACTTATATGTGCAA 60.414 37.037 12.71 8.81 37.81 4.08
2847 3259 8.510243 TTGATTCACTCACTTATATGTGCAAT 57.490 30.769 12.71 8.51 37.81 3.56
2848 3260 9.612066 TTGATTCACTCACTTATATGTGCAATA 57.388 29.630 12.71 0.00 37.81 1.90
2849 3261 9.612066 TGATTCACTCACTTATATGTGCAATAA 57.388 29.630 12.71 6.45 37.81 1.40
2850 3262 9.869844 GATTCACTCACTTATATGTGCAATAAC 57.130 33.333 12.71 0.93 37.81 1.89
2851 3263 9.618890 ATTCACTCACTTATATGTGCAATAACT 57.381 29.630 12.71 0.00 37.81 2.24
2853 3265 9.750125 TCACTCACTTATATGTGCAATAACTAG 57.250 33.333 12.71 6.21 37.81 2.57
2854 3266 9.750125 CACTCACTTATATGTGCAATAACTAGA 57.250 33.333 12.71 0.00 37.81 2.43
2855 3267 9.973450 ACTCACTTATATGTGCAATAACTAGAG 57.027 33.333 12.71 5.07 37.81 2.43
2856 3268 8.818141 TCACTTATATGTGCAATAACTAGAGC 57.182 34.615 12.71 0.00 37.81 4.09
2857 3269 8.421002 TCACTTATATGTGCAATAACTAGAGCA 58.579 33.333 12.71 0.00 37.81 4.26
2879 3291 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
2883 3295 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
2911 3323 8.970859 TCTTTATTTCAAAATGGAGGCAAAAA 57.029 26.923 0.00 0.00 0.00 1.94
2925 3337 2.478831 GCAAAAATTTTGCCTCGTCCA 58.521 42.857 27.56 0.00 39.38 4.02
2926 3338 2.220824 GCAAAAATTTTGCCTCGTCCAC 59.779 45.455 27.56 2.28 39.38 4.02
2927 3339 3.716601 CAAAAATTTTGCCTCGTCCACT 58.283 40.909 3.73 0.00 0.00 4.00
2928 3340 4.794655 GCAAAAATTTTGCCTCGTCCACTA 60.795 41.667 27.56 0.00 39.38 2.74
2929 3341 5.285651 CAAAAATTTTGCCTCGTCCACTAA 58.714 37.500 3.73 0.00 0.00 2.24
2930 3342 5.722021 AAAATTTTGCCTCGTCCACTAAT 57.278 34.783 1.75 0.00 0.00 1.73
2931 3343 5.722021 AAATTTTGCCTCGTCCACTAATT 57.278 34.783 0.00 0.00 0.00 1.40
2932 3344 4.701956 ATTTTGCCTCGTCCACTAATTG 57.298 40.909 0.00 0.00 0.00 2.32
2933 3345 2.851263 TTGCCTCGTCCACTAATTGT 57.149 45.000 0.00 0.00 0.00 2.71
2934 3346 2.380084 TGCCTCGTCCACTAATTGTC 57.620 50.000 0.00 0.00 0.00 3.18
2942 3365 6.183360 CCTCGTCCACTAATTGTCCACTAATA 60.183 42.308 0.00 0.00 0.00 0.98
2975 3398 8.836959 GAGTGGCTCGGTTAATTAATTAAAAG 57.163 34.615 19.67 17.15 34.36 2.27
2977 3400 9.016438 AGTGGCTCGGTTAATTAATTAAAAGAA 57.984 29.630 19.67 7.50 34.36 2.52
2978 3401 9.069078 GTGGCTCGGTTAATTAATTAAAAGAAC 57.931 33.333 19.67 15.96 34.36 3.01
2979 3402 8.794553 TGGCTCGGTTAATTAATTAAAAGAACA 58.205 29.630 19.67 17.65 34.36 3.18
2981 3404 9.285770 GCTCGGTTAATTAATTAAAAGAACAGG 57.714 33.333 19.67 11.73 34.36 4.00
3003 3426 9.908152 ACAGGTGAAAACATAGTTTTAAATAGC 57.092 29.630 7.75 5.57 0.00 2.97
3004 3427 9.353999 CAGGTGAAAACATAGTTTTAAATAGCC 57.646 33.333 7.75 0.00 0.00 3.93
3005 3428 8.241367 AGGTGAAAACATAGTTTTAAATAGCCG 58.759 33.333 7.75 0.00 0.00 5.52
3006 3429 7.486870 GGTGAAAACATAGTTTTAAATAGCCGG 59.513 37.037 7.75 0.00 0.00 6.13
3007 3430 7.008901 GTGAAAACATAGTTTTAAATAGCCGGC 59.991 37.037 21.89 21.89 0.00 6.13
3008 3431 6.769134 AAACATAGTTTTAAATAGCCGGCT 57.231 33.333 34.85 34.85 0.00 5.52
3009 3432 7.868906 AAACATAGTTTTAAATAGCCGGCTA 57.131 32.000 36.88 36.88 0.00 3.93
3010 3433 8.459911 AAACATAGTTTTAAATAGCCGGCTAT 57.540 30.769 37.79 37.79 40.63 2.97
3011 3434 9.563748 AAACATAGTTTTAAATAGCCGGCTATA 57.436 29.630 41.53 28.18 38.20 1.31
3012 3435 8.773404 ACATAGTTTTAAATAGCCGGCTATAG 57.227 34.615 41.53 23.83 38.20 1.31
3013 3436 7.333672 ACATAGTTTTAAATAGCCGGCTATAGC 59.666 37.037 41.53 29.09 38.20 2.97
3026 3449 3.889520 GCTATAGCCCCGTTATAGCTT 57.110 47.619 14.13 0.00 45.36 3.74
3027 3450 3.783191 GCTATAGCCCCGTTATAGCTTC 58.217 50.000 14.13 0.00 45.36 3.86
3028 3451 3.734293 GCTATAGCCCCGTTATAGCTTCG 60.734 52.174 14.13 0.00 45.36 3.79
3029 3452 0.316204 TAGCCCCGTTATAGCTTCGC 59.684 55.000 0.00 0.00 38.06 4.70
3030 3453 1.069258 GCCCCGTTATAGCTTCGCT 59.931 57.895 0.00 0.00 43.41 4.93
3031 3454 0.316204 GCCCCGTTATAGCTTCGCTA 59.684 55.000 0.00 0.00 45.55 4.26
3044 3467 5.073311 AGCTTCGCTATAACTGTTTGAGA 57.927 39.130 0.00 0.00 36.99 3.27
3045 3468 5.479306 AGCTTCGCTATAACTGTTTGAGAA 58.521 37.500 0.00 3.19 36.99 2.87
3046 3469 6.109359 AGCTTCGCTATAACTGTTTGAGAAT 58.891 36.000 0.00 0.00 36.99 2.40
3047 3470 6.036517 AGCTTCGCTATAACTGTTTGAGAATG 59.963 38.462 0.00 0.88 36.99 2.67
3048 3471 6.183360 GCTTCGCTATAACTGTTTGAGAATGT 60.183 38.462 0.00 0.00 0.00 2.71
3049 3472 7.624344 GCTTCGCTATAACTGTTTGAGAATGTT 60.624 37.037 0.00 0.00 0.00 2.71
3050 3473 7.060600 TCGCTATAACTGTTTGAGAATGTTG 57.939 36.000 0.00 0.00 0.00 3.33
3051 3474 5.734498 CGCTATAACTGTTTGAGAATGTTGC 59.266 40.000 0.00 0.00 0.00 4.17
3052 3475 6.030228 GCTATAACTGTTTGAGAATGTTGCC 58.970 40.000 0.00 0.00 0.00 4.52
3053 3476 3.354089 AACTGTTTGAGAATGTTGCCG 57.646 42.857 0.00 0.00 0.00 5.69
3054 3477 1.001378 ACTGTTTGAGAATGTTGCCGC 60.001 47.619 0.00 0.00 0.00 6.53
3055 3478 1.267806 CTGTTTGAGAATGTTGCCGCT 59.732 47.619 0.00 0.00 0.00 5.52
3056 3479 2.483877 CTGTTTGAGAATGTTGCCGCTA 59.516 45.455 0.00 0.00 0.00 4.26
3057 3480 2.881513 TGTTTGAGAATGTTGCCGCTAA 59.118 40.909 0.00 0.00 0.00 3.09
3058 3481 3.316588 TGTTTGAGAATGTTGCCGCTAAA 59.683 39.130 0.00 0.00 0.00 1.85
3059 3482 4.022416 TGTTTGAGAATGTTGCCGCTAAAT 60.022 37.500 0.00 0.00 0.00 1.40
3060 3483 3.763097 TGAGAATGTTGCCGCTAAATG 57.237 42.857 0.00 0.00 0.00 2.32
3061 3484 3.342719 TGAGAATGTTGCCGCTAAATGA 58.657 40.909 0.00 0.00 0.00 2.57
3062 3485 3.947196 TGAGAATGTTGCCGCTAAATGAT 59.053 39.130 0.00 0.00 0.00 2.45
3063 3486 4.398988 TGAGAATGTTGCCGCTAAATGATT 59.601 37.500 0.00 0.00 0.00 2.57
3064 3487 5.105797 TGAGAATGTTGCCGCTAAATGATTT 60.106 36.000 0.00 0.00 0.00 2.17
3065 3488 5.343249 AGAATGTTGCCGCTAAATGATTTC 58.657 37.500 0.00 0.00 0.00 2.17
3066 3489 4.717233 ATGTTGCCGCTAAATGATTTCA 57.283 36.364 0.00 0.00 0.00 2.69
3067 3490 4.717233 TGTTGCCGCTAAATGATTTCAT 57.283 36.364 0.00 0.00 38.41 2.57
3068 3491 4.422840 TGTTGCCGCTAAATGATTTCATG 58.577 39.130 0.00 0.00 36.56 3.07
3069 3492 3.082698 TGCCGCTAAATGATTTCATGC 57.917 42.857 0.00 0.00 36.56 4.06
3070 3493 2.426381 TGCCGCTAAATGATTTCATGCA 59.574 40.909 0.00 0.00 36.56 3.96
3071 3494 2.791004 GCCGCTAAATGATTTCATGCAC 59.209 45.455 0.00 0.00 36.56 4.57
3072 3495 3.734597 GCCGCTAAATGATTTCATGCACA 60.735 43.478 0.00 0.00 36.56 4.57
3073 3496 3.792956 CCGCTAAATGATTTCATGCACAC 59.207 43.478 0.00 0.00 36.56 3.82
3074 3497 4.439153 CCGCTAAATGATTTCATGCACACT 60.439 41.667 0.00 0.00 36.56 3.55
3075 3498 5.097529 CGCTAAATGATTTCATGCACACTT 58.902 37.500 0.00 0.00 36.56 3.16
3076 3499 5.574055 CGCTAAATGATTTCATGCACACTTT 59.426 36.000 0.00 0.00 36.56 2.66
3077 3500 6.453265 CGCTAAATGATTTCATGCACACTTTG 60.453 38.462 0.00 0.00 36.56 2.77
3087 3510 0.028110 GCACACTTTGCCGCTATAGC 59.972 55.000 15.09 15.09 46.63 2.97
3088 3511 0.657840 CACACTTTGCCGCTATAGCC 59.342 55.000 19.00 6.59 37.91 3.93
3089 3512 0.463833 ACACTTTGCCGCTATAGCCC 60.464 55.000 19.00 10.69 37.91 5.19
3090 3513 1.227556 ACTTTGCCGCTATAGCCCG 60.228 57.895 19.00 10.31 37.91 6.13
3091 3514 2.590575 TTTGCCGCTATAGCCCGC 60.591 61.111 19.00 19.41 37.91 6.13
3092 3515 4.619227 TTGCCGCTATAGCCCGCC 62.619 66.667 22.28 9.38 37.91 6.13
3094 3517 4.394712 GCCGCTATAGCCCGCCAT 62.395 66.667 19.00 0.00 37.91 4.40
3095 3518 3.014085 GCCGCTATAGCCCGCCATA 62.014 63.158 19.00 0.00 37.91 2.74
3096 3519 1.141881 CCGCTATAGCCCGCCATAG 59.858 63.158 19.00 2.25 37.91 2.23
3097 3520 1.519455 CGCTATAGCCCGCCATAGC 60.519 63.158 19.00 14.71 44.02 2.97
3098 3521 1.153349 GCTATAGCCCGCCATAGCC 60.153 63.158 14.13 0.12 42.44 3.93
3099 3522 1.522569 CTATAGCCCGCCATAGCCC 59.477 63.158 0.00 0.00 34.57 5.19
3100 3523 1.229368 TATAGCCCGCCATAGCCCA 60.229 57.895 0.00 0.00 34.57 5.36
3101 3524 1.264749 TATAGCCCGCCATAGCCCAG 61.265 60.000 0.00 0.00 34.57 4.45
3104 3527 3.241530 CCCGCCATAGCCCAGCTA 61.242 66.667 0.00 0.00 45.55 3.32
3126 3549 6.856426 GCTATAGCTATTTTTAAAGGTTGCCG 59.144 38.462 17.75 0.00 38.21 5.69
3127 3550 3.845178 AGCTATTTTTAAAGGTTGCCGC 58.155 40.909 0.00 0.00 0.00 6.53
3128 3551 3.509967 AGCTATTTTTAAAGGTTGCCGCT 59.490 39.130 0.00 0.00 0.00 5.52
3129 3552 4.703093 AGCTATTTTTAAAGGTTGCCGCTA 59.297 37.500 0.00 0.00 0.00 4.26
3130 3553 5.184287 AGCTATTTTTAAAGGTTGCCGCTAA 59.816 36.000 0.00 0.00 0.00 3.09
3131 3554 5.865013 GCTATTTTTAAAGGTTGCCGCTAAA 59.135 36.000 0.00 0.00 0.00 1.85
3132 3555 6.533723 GCTATTTTTAAAGGTTGCCGCTAAAT 59.466 34.615 0.00 0.00 0.00 1.40
3133 3556 6.720012 ATTTTTAAAGGTTGCCGCTAAATG 57.280 33.333 0.00 0.00 0.00 2.32
3134 3557 4.857509 TTTAAAGGTTGCCGCTAAATGT 57.142 36.364 0.00 0.00 0.00 2.71
3135 3558 4.428615 TTAAAGGTTGCCGCTAAATGTC 57.571 40.909 0.00 0.00 0.00 3.06
3136 3559 1.904287 AAGGTTGCCGCTAAATGTCA 58.096 45.000 0.00 0.00 0.00 3.58
3137 3560 2.128771 AGGTTGCCGCTAAATGTCAT 57.871 45.000 0.00 0.00 0.00 3.06
3138 3561 3.275617 AGGTTGCCGCTAAATGTCATA 57.724 42.857 0.00 0.00 0.00 2.15
3139 3562 3.206150 AGGTTGCCGCTAAATGTCATAG 58.794 45.455 0.00 0.00 0.00 2.23
3140 3563 2.287009 GGTTGCCGCTAAATGTCATAGC 60.287 50.000 0.00 0.00 41.85 2.97
3141 3564 1.593196 TGCCGCTAAATGTCATAGCC 58.407 50.000 2.63 0.00 42.18 3.93
3142 3565 0.875059 GCCGCTAAATGTCATAGCCC 59.125 55.000 2.63 0.00 42.18 5.19
3143 3566 1.148310 CCGCTAAATGTCATAGCCCG 58.852 55.000 2.63 0.00 42.18 6.13
3144 3567 0.512952 CGCTAAATGTCATAGCCCGC 59.487 55.000 2.63 0.00 42.18 6.13
3145 3568 1.873903 CGCTAAATGTCATAGCCCGCT 60.874 52.381 2.63 0.00 42.18 5.52
3146 3569 2.609491 CGCTAAATGTCATAGCCCGCTA 60.609 50.000 0.00 0.00 42.18 4.26
3147 3570 3.600388 GCTAAATGTCATAGCCCGCTAT 58.400 45.455 3.31 3.31 39.87 2.97
3148 3571 4.003648 GCTAAATGTCATAGCCCGCTATT 58.996 43.478 6.48 0.00 39.87 1.73
3149 3572 4.455877 GCTAAATGTCATAGCCCGCTATTT 59.544 41.667 6.48 3.52 39.87 1.40
3150 3573 5.642063 GCTAAATGTCATAGCCCGCTATTTA 59.358 40.000 6.48 4.42 39.87 1.40
3179 3602 9.520515 AACCTTCACAAATTTATCTACTCATGT 57.479 29.630 0.00 0.00 0.00 3.21
3197 3620 4.634883 TCATGTGAACTACTCTCGGACTAC 59.365 45.833 0.00 0.00 0.00 2.73
3238 3661 8.902806 TCCAACAAACACATCCAATATAGAATC 58.097 33.333 0.00 0.00 0.00 2.52
3239 3662 8.685427 CCAACAAACACATCCAATATAGAATCA 58.315 33.333 0.00 0.00 0.00 2.57
3242 3665 9.071276 ACAAACACATCCAATATAGAATCATCC 57.929 33.333 0.00 0.00 0.00 3.51
3243 3666 9.070179 CAAACACATCCAATATAGAATCATCCA 57.930 33.333 0.00 0.00 0.00 3.41
3244 3667 9.818270 AAACACATCCAATATAGAATCATCCAT 57.182 29.630 0.00 0.00 0.00 3.41
3245 3668 9.818270 AACACATCCAATATAGAATCATCCATT 57.182 29.630 0.00 0.00 0.00 3.16
3246 3669 9.458727 ACACATCCAATATAGAATCATCCATTC 57.541 33.333 0.00 0.00 41.37 2.67
3247 3670 8.900781 CACATCCAATATAGAATCATCCATTCC 58.099 37.037 0.00 0.00 41.94 3.01
3248 3671 8.843773 ACATCCAATATAGAATCATCCATTCCT 58.156 33.333 0.00 0.00 41.94 3.36
3249 3672 9.121658 CATCCAATATAGAATCATCCATTCCTG 57.878 37.037 0.00 0.00 41.94 3.86
3250 3673 7.114754 TCCAATATAGAATCATCCATTCCTGC 58.885 38.462 0.00 0.00 41.94 4.85
3251 3674 6.888088 CCAATATAGAATCATCCATTCCTGCA 59.112 38.462 0.00 0.00 41.94 4.41
3252 3675 7.395206 CCAATATAGAATCATCCATTCCTGCAA 59.605 37.037 0.00 0.00 41.94 4.08
3253 3676 8.799367 CAATATAGAATCATCCATTCCTGCAAA 58.201 33.333 0.00 0.00 41.94 3.68
3254 3677 8.945195 ATATAGAATCATCCATTCCTGCAAAA 57.055 30.769 0.00 0.00 41.94 2.44
3255 3678 5.593679 AGAATCATCCATTCCTGCAAAAG 57.406 39.130 0.00 0.00 41.94 2.27
3256 3679 5.266788 AGAATCATCCATTCCTGCAAAAGA 58.733 37.500 0.00 0.00 41.94 2.52
3257 3680 5.718130 AGAATCATCCATTCCTGCAAAAGAA 59.282 36.000 0.00 0.00 41.94 2.52
3258 3681 6.211986 AGAATCATCCATTCCTGCAAAAGAAA 59.788 34.615 0.00 0.00 41.94 2.52
3259 3682 5.804944 TCATCCATTCCTGCAAAAGAAAA 57.195 34.783 0.00 0.00 0.00 2.29
3260 3683 6.172136 TCATCCATTCCTGCAAAAGAAAAA 57.828 33.333 0.00 0.00 0.00 1.94
3261 3684 6.771573 TCATCCATTCCTGCAAAAGAAAAAT 58.228 32.000 0.00 0.00 0.00 1.82
3262 3685 7.905265 TCATCCATTCCTGCAAAAGAAAAATA 58.095 30.769 0.00 0.00 0.00 1.40
3263 3686 8.036575 TCATCCATTCCTGCAAAAGAAAAATAG 58.963 33.333 0.00 0.00 0.00 1.73
3264 3687 7.537596 TCCATTCCTGCAAAAGAAAAATAGA 57.462 32.000 0.00 0.00 0.00 1.98
3265 3688 7.961351 TCCATTCCTGCAAAAGAAAAATAGAA 58.039 30.769 0.00 0.00 0.00 2.10
3266 3689 8.596293 TCCATTCCTGCAAAAGAAAAATAGAAT 58.404 29.630 0.00 0.00 0.00 2.40
3301 3724 5.375417 TGGATCACAACATCACAAATGAC 57.625 39.130 0.00 0.00 37.79 3.06
3347 3770 9.413048 ACTTTAGAAGAATCTAACGACAAAGAG 57.587 33.333 8.52 0.67 45.52 2.85
3386 3811 3.838120 TCACGATTGCAGTCTAGACAAG 58.162 45.455 24.44 16.74 0.00 3.16
3392 3817 5.230936 CGATTGCAGTCTAGACAAGTGTATG 59.769 44.000 24.44 12.81 0.00 2.39
3460 3885 8.623903 CCATTGCACTTGCTAAATATCTTCTTA 58.376 33.333 2.33 0.00 42.66 2.10
3483 3908 6.327386 AGGATTTTAGATTTAGGGTGAGCA 57.673 37.500 0.00 0.00 0.00 4.26
3529 3962 3.543665 GATGCCTTCTGCTTCAAGAGAT 58.456 45.455 0.00 0.00 42.25 2.75
3580 4015 7.765307 TCCAAGTTAGTTAGGTATACGACAAG 58.235 38.462 0.00 0.00 0.00 3.16
3589 4024 4.279145 AGGTATACGACAAGTCAGATGGT 58.721 43.478 0.72 0.00 0.00 3.55
3599 4034 2.964740 AGTCAGATGGTGAACATGTCG 58.035 47.619 0.00 0.00 40.72 4.35
3600 4035 1.394917 GTCAGATGGTGAACATGTCGC 59.605 52.381 0.00 0.00 40.72 5.19
3605 4040 0.678950 TGGTGAACATGTCGCTGAGA 59.321 50.000 0.00 0.00 36.92 3.27
3621 4056 1.146358 GAGATTACGCACCGGCACTC 61.146 60.000 0.00 0.00 41.24 3.51
3622 4057 2.125269 ATTACGCACCGGCACTCC 60.125 61.111 0.00 0.00 41.24 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.857093 TGATCATGTTGTGTACGATCACG 59.143 43.478 0.00 0.00 38.00 4.35
19 20 3.211865 CCTCTCAACCACCATGATCATG 58.788 50.000 25.97 25.97 38.51 3.07
28 29 1.202818 GGCATATCCCTCTCAACCACC 60.203 57.143 0.00 0.00 0.00 4.61
88 89 1.891919 GTTTGTGTGCCTGCGAGGA 60.892 57.895 6.40 0.00 37.67 3.71
89 90 2.639286 GTTTGTGTGCCTGCGAGG 59.361 61.111 0.00 0.00 38.80 4.63
148 150 4.134379 TCAGTTGATCATTGGAGCTCTC 57.866 45.455 14.64 4.40 0.00 3.20
171 173 7.289549 TGTCAATGATACTCAATGAGATCCTCT 59.710 37.037 18.20 0.00 37.01 3.69
262 264 4.513198 ACACAACAAATAATCCAACCGG 57.487 40.909 0.00 0.00 0.00 5.28
393 574 2.993899 GCTACGTGCAATAACAGTCACT 59.006 45.455 0.00 0.00 42.31 3.41
400 581 2.561569 AGGATGGCTACGTGCAATAAC 58.438 47.619 0.00 0.00 45.15 1.89
402 583 3.275617 AAAGGATGGCTACGTGCAATA 57.724 42.857 0.00 0.00 45.15 1.90
403 584 2.128771 AAAGGATGGCTACGTGCAAT 57.871 45.000 0.00 0.00 45.15 3.56
404 585 2.745281 GTTAAAGGATGGCTACGTGCAA 59.255 45.455 0.00 0.00 45.15 4.08
406 587 1.669265 GGTTAAAGGATGGCTACGTGC 59.331 52.381 0.00 0.00 41.94 5.34
407 588 1.931172 CGGTTAAAGGATGGCTACGTG 59.069 52.381 0.00 0.00 0.00 4.49
408 589 1.551883 ACGGTTAAAGGATGGCTACGT 59.448 47.619 0.00 0.00 0.00 3.57
413 594 3.004944 TGTTTTGACGGTTAAAGGATGGC 59.995 43.478 0.00 0.00 0.00 4.40
414 595 4.839668 TGTTTTGACGGTTAAAGGATGG 57.160 40.909 0.00 0.00 0.00 3.51
415 596 8.240682 TCATAATGTTTTGACGGTTAAAGGATG 58.759 33.333 0.00 1.33 0.00 3.51
416 597 8.343168 TCATAATGTTTTGACGGTTAAAGGAT 57.657 30.769 0.00 0.00 0.00 3.24
417 598 7.747155 TCATAATGTTTTGACGGTTAAAGGA 57.253 32.000 0.00 0.00 0.00 3.36
420 601 7.380065 GTGCTTCATAATGTTTTGACGGTTAAA 59.620 33.333 0.00 0.00 0.00 1.52
427 615 4.475944 AGCGTGCTTCATAATGTTTTGAC 58.524 39.130 0.00 0.00 0.00 3.18
445 633 4.280174 ACCTCCATAACGTATATGAAGCGT 59.720 41.667 15.10 6.10 40.81 5.07
515 703 4.083802 GGAACTCTGCCATATACGCAATTC 60.084 45.833 0.00 3.39 35.40 2.17
541 729 4.032786 GTGGTGACTGCAAAATTTTGACAC 59.967 41.667 30.40 27.00 40.55 3.67
557 745 0.317020 GCGCAAGTCAAAGTGGTGAC 60.317 55.000 0.30 0.00 46.90 3.67
564 752 2.644078 GAAAGTCAGCGCAAGTCAAAG 58.356 47.619 11.47 0.00 41.68 2.77
585 773 1.948721 CTTTCGCTTCAATGGGGGCC 61.949 60.000 0.00 0.00 0.00 5.80
590 778 1.593070 CGATCGCTTTCGCTTCAATGG 60.593 52.381 0.26 0.00 35.26 3.16
592 780 1.359848 ACGATCGCTTTCGCTTCAAT 58.640 45.000 16.60 0.00 42.82 2.57
594 782 1.126113 GAAACGATCGCTTTCGCTTCA 59.874 47.619 16.60 0.00 41.48 3.02
595 783 1.390463 AGAAACGATCGCTTTCGCTTC 59.610 47.619 24.22 11.20 41.92 3.86
596 784 1.429463 AGAAACGATCGCTTTCGCTT 58.571 45.000 24.22 13.22 42.82 4.68
597 785 1.429463 AAGAAACGATCGCTTTCGCT 58.571 45.000 24.22 17.69 42.82 4.93
598 786 1.898709 CAAAGAAACGATCGCTTTCGC 59.101 47.619 24.22 12.16 42.82 4.70
600 788 4.128554 TCACAAAGAAACGATCGCTTTC 57.871 40.909 23.68 23.68 30.00 2.62
601 789 3.607078 GCTCACAAAGAAACGATCGCTTT 60.607 43.478 16.60 13.70 32.46 3.51
648 841 3.813529 ATTCGTAGCAAGCAAGAACAC 57.186 42.857 0.00 0.00 0.00 3.32
779 982 1.214062 GACAGAGGAGCGGTGACAG 59.786 63.158 0.00 0.00 0.00 3.51
827 1030 1.145162 CCGCAACCTGCAACAACAAC 61.145 55.000 0.00 0.00 45.36 3.32
828 1031 1.140589 CCGCAACCTGCAACAACAA 59.859 52.632 0.00 0.00 45.36 2.83
829 1032 2.780094 CCCGCAACCTGCAACAACA 61.780 57.895 0.00 0.00 45.36 3.33
830 1033 2.027460 CCCGCAACCTGCAACAAC 59.973 61.111 0.00 0.00 45.36 3.32
831 1034 2.124109 TCCCGCAACCTGCAACAA 60.124 55.556 0.00 0.00 45.36 2.83
845 1048 2.998949 GGGTGAGATGGGTGTCCC 59.001 66.667 0.00 0.00 45.71 4.46
846 1049 1.550130 TTCGGGTGAGATGGGTGTCC 61.550 60.000 0.00 0.00 0.00 4.02
847 1050 0.323629 TTTCGGGTGAGATGGGTGTC 59.676 55.000 0.00 0.00 0.00 3.67
848 1051 0.768622 TTTTCGGGTGAGATGGGTGT 59.231 50.000 0.00 0.00 0.00 4.16
849 1052 1.165270 GTTTTCGGGTGAGATGGGTG 58.835 55.000 0.00 0.00 0.00 4.61
850 1053 0.768622 TGTTTTCGGGTGAGATGGGT 59.231 50.000 0.00 0.00 0.00 4.51
851 1054 1.812571 CTTGTTTTCGGGTGAGATGGG 59.187 52.381 0.00 0.00 0.00 4.00
852 1055 2.778299 TCTTGTTTTCGGGTGAGATGG 58.222 47.619 0.00 0.00 0.00 3.51
853 1056 4.275936 ACTTTCTTGTTTTCGGGTGAGATG 59.724 41.667 0.00 0.00 0.00 2.90
854 1057 4.275936 CACTTTCTTGTTTTCGGGTGAGAT 59.724 41.667 0.00 0.00 0.00 2.75
855 1058 3.625764 CACTTTCTTGTTTTCGGGTGAGA 59.374 43.478 0.00 0.00 0.00 3.27
856 1059 3.792124 GCACTTTCTTGTTTTCGGGTGAG 60.792 47.826 0.00 0.00 0.00 3.51
857 1060 2.098443 GCACTTTCTTGTTTTCGGGTGA 59.902 45.455 0.00 0.00 0.00 4.02
901 1104 7.883823 AGTAGGTGCATATATATGTCCTCCTA 58.116 38.462 28.21 23.09 39.20 2.94
903 1106 7.780745 AGTAGTAGGTGCATATATATGTCCTCC 59.219 40.741 28.21 22.26 39.20 4.30
904 1107 8.754991 AGTAGTAGGTGCATATATATGTCCTC 57.245 38.462 28.21 22.35 39.20 3.71
905 1108 9.629878 GTAGTAGTAGGTGCATATATATGTCCT 57.370 37.037 27.81 27.81 40.39 3.85
911 1114 9.803507 ACACAAGTAGTAGTAGGTGCATATATA 57.196 33.333 8.78 0.00 0.00 0.86
918 1121 5.633830 TGTACACAAGTAGTAGTAGGTGC 57.366 43.478 0.00 0.00 0.00 5.01
922 1125 7.903946 CACGAGAATGTACACAAGTAGTAGTAG 59.096 40.741 0.00 0.00 0.00 2.57
927 1130 4.235360 GCACGAGAATGTACACAAGTAGT 58.765 43.478 0.00 0.00 0.00 2.73
942 1149 4.056125 CCGACCAGCTGCACGAGA 62.056 66.667 24.66 0.00 0.00 4.04
943 1150 4.056125 TCCGACCAGCTGCACGAG 62.056 66.667 24.66 16.99 0.00 4.18
944 1151 4.357947 GTCCGACCAGCTGCACGA 62.358 66.667 24.66 9.03 0.00 4.35
949 1156 3.190849 CATGCGTCCGACCAGCTG 61.191 66.667 6.78 6.78 0.00 4.24
968 1175 5.048083 ACACCTTAATTACGTGGACGAACTA 60.048 40.000 6.12 0.00 43.02 2.24
969 1176 4.240096 CACCTTAATTACGTGGACGAACT 58.760 43.478 6.12 0.00 43.02 3.01
971 1178 4.255833 ACACCTTAATTACGTGGACGAA 57.744 40.909 6.12 0.00 43.02 3.85
1176 1408 1.762460 GATGAGGAAGGCGAGGGGA 60.762 63.158 0.00 0.00 0.00 4.81
1292 1525 1.337260 GCAGAGTATATGCCCCACTCG 60.337 57.143 0.00 0.00 42.80 4.18
1481 1732 3.153919 ACACAAACACAAAGTCCACAGT 58.846 40.909 0.00 0.00 0.00 3.55
1517 1768 3.191371 GGTGATTCTGCATTTCTTCGGTT 59.809 43.478 0.00 0.00 0.00 4.44
1519 1770 2.749076 TGGTGATTCTGCATTTCTTCGG 59.251 45.455 0.00 0.00 0.00 4.30
1587 1905 1.517257 GAGAGCCGTGACGATGGTG 60.517 63.158 6.54 0.00 0.00 4.17
1608 1926 3.013648 AGGTAGATTGAGGGGTGAGGTTA 59.986 47.826 0.00 0.00 0.00 2.85
1706 2035 1.070758 GCCTTTGAGTCTGTGACCAGA 59.929 52.381 0.00 0.00 45.44 3.86
1709 2038 0.606673 GGGCCTTTGAGTCTGTGACC 60.607 60.000 0.84 0.00 32.18 4.02
1722 2058 1.351076 CATTTTCCAAGTGGGGCCTT 58.649 50.000 0.84 0.00 37.22 4.35
2094 2474 3.763356 TGGATGCAGAGCGCGAGT 61.763 61.111 12.10 0.00 46.97 4.18
2121 2501 3.775654 CCGAGCCTCCAGTGGTCC 61.776 72.222 9.54 0.00 0.00 4.46
2179 2559 2.974698 CCGATCAATCAGCCGCCC 60.975 66.667 0.00 0.00 0.00 6.13
2190 2570 0.464373 GAGGAAGCAATGGCCGATCA 60.464 55.000 0.00 0.00 42.56 2.92
2200 2580 4.697756 CGGGCGTGGAGGAAGCAA 62.698 66.667 0.00 0.00 0.00 3.91
2235 2619 3.058155 CCTGGACGTACGATAGGAATCAG 60.058 52.174 24.41 14.74 43.77 2.90
2238 2622 2.236766 CCCTGGACGTACGATAGGAAT 58.763 52.381 24.41 0.00 43.77 3.01
2241 2625 2.260844 TACCCTGGACGTACGATAGG 57.739 55.000 24.41 22.65 43.77 2.57
2242 2626 2.414481 CGATACCCTGGACGTACGATAG 59.586 54.545 24.41 15.51 46.19 2.08
2353 2740 0.248661 CTCATGACCGCGACGAAGAT 60.249 55.000 8.23 0.00 0.00 2.40
2440 2830 1.527034 ACAGACACCACATGCATGTC 58.473 50.000 29.23 18.50 42.54 3.06
2629 3041 6.459670 TCAGATTATGCTTCACCGTTAGTA 57.540 37.500 0.00 0.00 0.00 1.82
2669 3081 2.846193 TCTTGACTGCCAAAGTGTACC 58.154 47.619 0.00 0.00 40.07 3.34
2680 3092 9.468532 AAAACTGATAAAGAAAATCTTGACTGC 57.531 29.630 0.00 0.00 36.71 4.40
2720 3132 7.393515 AGATGTACGATACTTATGGCACATCTA 59.606 37.037 18.45 0.00 45.50 1.98
2725 3137 7.368833 ACTTAGATGTACGATACTTATGGCAC 58.631 38.462 0.00 0.00 0.00 5.01
2726 3138 7.309012 GGACTTAGATGTACGATACTTATGGCA 60.309 40.741 0.00 0.00 0.00 4.92
2727 3139 7.028361 GGACTTAGATGTACGATACTTATGGC 58.972 42.308 0.00 0.00 0.00 4.40
2728 3140 8.338072 AGGACTTAGATGTACGATACTTATGG 57.662 38.462 0.00 0.00 0.00 2.74
2737 3149 9.734984 TCAATGATATAGGACTTAGATGTACGA 57.265 33.333 0.00 0.00 0.00 3.43
2768 3180 9.396022 AGAAAATATCCACACGAATCTTAATGT 57.604 29.630 0.00 0.00 0.00 2.71
2773 3185 9.014297 AGAAAAGAAAATATCCACACGAATCTT 57.986 29.630 0.00 0.00 0.00 2.40
2774 3186 8.567285 AGAAAAGAAAATATCCACACGAATCT 57.433 30.769 0.00 0.00 0.00 2.40
2775 3187 9.626045 AAAGAAAAGAAAATATCCACACGAATC 57.374 29.630 0.00 0.00 0.00 2.52
2776 3188 9.981114 AAAAGAAAAGAAAATATCCACACGAAT 57.019 25.926 0.00 0.00 0.00 3.34
2777 3189 9.810545 AAAAAGAAAAGAAAATATCCACACGAA 57.189 25.926 0.00 0.00 0.00 3.85
2801 3213 6.696411 TCAAGCACAAAGAGGAAAAGAAAAA 58.304 32.000 0.00 0.00 0.00 1.94
2802 3214 6.279513 TCAAGCACAAAGAGGAAAAGAAAA 57.720 33.333 0.00 0.00 0.00 2.29
2803 3215 5.913137 TCAAGCACAAAGAGGAAAAGAAA 57.087 34.783 0.00 0.00 0.00 2.52
2804 3216 6.096705 TGAATCAAGCACAAAGAGGAAAAGAA 59.903 34.615 0.00 0.00 0.00 2.52
2805 3217 5.593909 TGAATCAAGCACAAAGAGGAAAAGA 59.406 36.000 0.00 0.00 0.00 2.52
2806 3218 5.689068 GTGAATCAAGCACAAAGAGGAAAAG 59.311 40.000 0.00 0.00 36.31 2.27
2807 3219 5.360714 AGTGAATCAAGCACAAAGAGGAAAA 59.639 36.000 0.00 0.00 38.70 2.29
2808 3220 4.889409 AGTGAATCAAGCACAAAGAGGAAA 59.111 37.500 0.00 0.00 38.70 3.13
2809 3221 4.464008 AGTGAATCAAGCACAAAGAGGAA 58.536 39.130 0.00 0.00 38.70 3.36
2810 3222 4.067896 GAGTGAATCAAGCACAAAGAGGA 58.932 43.478 0.00 0.00 38.70 3.71
2811 3223 3.817084 TGAGTGAATCAAGCACAAAGAGG 59.183 43.478 0.00 0.00 38.70 3.69
2812 3224 4.514441 AGTGAGTGAATCAAGCACAAAGAG 59.486 41.667 15.75 0.00 40.43 2.85
2813 3225 4.454678 AGTGAGTGAATCAAGCACAAAGA 58.545 39.130 15.75 0.00 40.43 2.52
2814 3226 4.825546 AGTGAGTGAATCAAGCACAAAG 57.174 40.909 15.75 0.00 40.43 2.77
2815 3227 6.882610 ATAAGTGAGTGAATCAAGCACAAA 57.117 33.333 15.75 6.53 40.43 2.83
2816 3228 7.607607 ACATATAAGTGAGTGAATCAAGCACAA 59.392 33.333 15.75 6.80 40.43 3.33
2817 3229 7.064966 CACATATAAGTGAGTGAATCAAGCACA 59.935 37.037 15.75 1.10 42.05 4.57
2818 3230 7.404985 CACATATAAGTGAGTGAATCAAGCAC 58.595 38.462 1.81 8.20 42.05 4.40
2819 3231 6.037500 GCACATATAAGTGAGTGAATCAAGCA 59.962 38.462 12.15 0.00 42.05 3.91
2820 3232 6.037500 TGCACATATAAGTGAGTGAATCAAGC 59.962 38.462 12.15 0.00 42.05 4.01
2821 3233 7.543947 TGCACATATAAGTGAGTGAATCAAG 57.456 36.000 12.15 0.00 42.05 3.02
2822 3234 7.920160 TTGCACATATAAGTGAGTGAATCAA 57.080 32.000 12.15 2.34 42.05 2.57
2823 3235 9.612066 TTATTGCACATATAAGTGAGTGAATCA 57.388 29.630 12.15 0.00 42.05 2.57
2824 3236 9.869844 GTTATTGCACATATAAGTGAGTGAATC 57.130 33.333 12.15 0.00 42.05 2.52
2825 3237 9.618890 AGTTATTGCACATATAAGTGAGTGAAT 57.381 29.630 12.15 6.38 42.05 2.57
2827 3239 9.750125 CTAGTTATTGCACATATAAGTGAGTGA 57.250 33.333 12.15 0.00 42.05 3.41
2828 3240 9.750125 TCTAGTTATTGCACATATAAGTGAGTG 57.250 33.333 12.15 1.11 42.05 3.51
2829 3241 9.973450 CTCTAGTTATTGCACATATAAGTGAGT 57.027 33.333 12.15 0.00 42.05 3.41
2830 3242 8.920665 GCTCTAGTTATTGCACATATAAGTGAG 58.079 37.037 12.15 10.71 42.05 3.51
2831 3243 8.421002 TGCTCTAGTTATTGCACATATAAGTGA 58.579 33.333 12.15 0.00 42.05 3.41
2832 3244 8.593492 TGCTCTAGTTATTGCACATATAAGTG 57.407 34.615 3.71 3.71 42.37 3.16
2858 3270 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
2859 3271 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
2860 3272 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
2861 3273 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
2862 3274 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
2863 3275 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
2864 3276 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
2865 3277 0.547712 AGGGTGTGTCTAGGGCACAT 60.548 55.000 18.92 5.97 46.66 3.21
2866 3278 0.766674 AAGGGTGTGTCTAGGGCACA 60.767 55.000 14.22 14.22 43.60 4.57
2867 3279 0.400594 AAAGGGTGTGTCTAGGGCAC 59.599 55.000 10.20 10.20 37.37 5.01
2868 3280 0.690762 GAAAGGGTGTGTCTAGGGCA 59.309 55.000 0.00 0.00 0.00 5.36
2869 3281 0.984995 AGAAAGGGTGTGTCTAGGGC 59.015 55.000 0.00 0.00 0.00 5.19
2870 3282 3.790089 AAAGAAAGGGTGTGTCTAGGG 57.210 47.619 0.00 0.00 0.00 3.53
2871 3283 6.940298 TGAAATAAAGAAAGGGTGTGTCTAGG 59.060 38.462 0.00 0.00 0.00 3.02
2872 3284 7.979444 TGAAATAAAGAAAGGGTGTGTCTAG 57.021 36.000 0.00 0.00 0.00 2.43
2873 3285 8.754991 TTTGAAATAAAGAAAGGGTGTGTCTA 57.245 30.769 0.00 0.00 0.00 2.59
2874 3286 7.654022 TTTGAAATAAAGAAAGGGTGTGTCT 57.346 32.000 0.00 0.00 0.00 3.41
2875 3287 8.764287 CATTTTGAAATAAAGAAAGGGTGTGTC 58.236 33.333 0.00 0.00 0.00 3.67
2876 3288 7.714813 CCATTTTGAAATAAAGAAAGGGTGTGT 59.285 33.333 0.00 0.00 30.62 3.72
2877 3289 7.930865 TCCATTTTGAAATAAAGAAAGGGTGTG 59.069 33.333 0.00 0.00 35.22 3.82
2878 3290 8.028652 TCCATTTTGAAATAAAGAAAGGGTGT 57.971 30.769 0.00 0.00 35.22 4.16
2879 3291 7.603784 CCTCCATTTTGAAATAAAGAAAGGGTG 59.396 37.037 0.00 0.00 35.22 4.61
2880 3292 7.679783 CCTCCATTTTGAAATAAAGAAAGGGT 58.320 34.615 0.00 0.00 35.22 4.34
2881 3293 6.595326 GCCTCCATTTTGAAATAAAGAAAGGG 59.405 38.462 0.00 0.00 35.04 3.95
2882 3294 7.160726 TGCCTCCATTTTGAAATAAAGAAAGG 58.839 34.615 0.00 0.00 0.00 3.11
2883 3295 8.606040 TTGCCTCCATTTTGAAATAAAGAAAG 57.394 30.769 0.00 0.00 0.00 2.62
2911 3323 4.079253 ACAATTAGTGGACGAGGCAAAAT 58.921 39.130 0.00 0.00 0.00 1.82
2954 3377 9.285770 CTGTTCTTTTAATTAATTAACCGAGCC 57.714 33.333 18.16 12.13 32.42 4.70
2977 3400 9.908152 GCTATTTAAAACTATGTTTTCACCTGT 57.092 29.630 11.05 0.00 0.00 4.00
2978 3401 9.353999 GGCTATTTAAAACTATGTTTTCACCTG 57.646 33.333 11.05 3.80 0.00 4.00
2979 3402 8.241367 CGGCTATTTAAAACTATGTTTTCACCT 58.759 33.333 11.05 0.56 0.00 4.00
2981 3404 7.008901 GCCGGCTATTTAAAACTATGTTTTCAC 59.991 37.037 22.15 0.00 0.00 3.18
2982 3405 7.030768 GCCGGCTATTTAAAACTATGTTTTCA 58.969 34.615 22.15 0.00 0.00 2.69
2983 3406 7.255569 AGCCGGCTATTTAAAACTATGTTTTC 58.744 34.615 31.86 0.00 0.00 2.29
2984 3407 7.165460 AGCCGGCTATTTAAAACTATGTTTT 57.835 32.000 31.86 12.15 0.00 2.43
2985 3408 6.769134 AGCCGGCTATTTAAAACTATGTTT 57.231 33.333 31.86 0.00 0.00 2.83
2986 3409 9.216117 CTATAGCCGGCTATTTAAAACTATGTT 57.784 33.333 44.65 24.19 39.65 2.71
2987 3410 7.333672 GCTATAGCCGGCTATTTAAAACTATGT 59.666 37.037 44.65 24.60 39.65 2.29
2988 3411 7.685594 GCTATAGCCGGCTATTTAAAACTATG 58.314 38.462 44.65 24.19 39.65 2.23
2989 3412 7.845066 GCTATAGCCGGCTATTTAAAACTAT 57.155 36.000 44.65 26.21 39.65 2.12
3007 3430 4.030134 CGAAGCTATAACGGGGCTATAG 57.970 50.000 0.00 0.00 35.06 1.31
3024 3447 7.295952 ACATTCTCAAACAGTTATAGCGAAG 57.704 36.000 0.00 0.00 0.00 3.79
3025 3448 7.518161 CAACATTCTCAAACAGTTATAGCGAA 58.482 34.615 0.00 0.00 0.00 4.70
3026 3449 6.402118 GCAACATTCTCAAACAGTTATAGCGA 60.402 38.462 0.00 0.00 0.00 4.93
3027 3450 5.734498 GCAACATTCTCAAACAGTTATAGCG 59.266 40.000 0.00 0.00 0.00 4.26
3028 3451 6.030228 GGCAACATTCTCAAACAGTTATAGC 58.970 40.000 0.00 0.00 0.00 2.97
3029 3452 6.250819 CGGCAACATTCTCAAACAGTTATAG 58.749 40.000 0.00 0.00 0.00 1.31
3030 3453 5.391523 GCGGCAACATTCTCAAACAGTTATA 60.392 40.000 0.00 0.00 0.00 0.98
3031 3454 4.615912 GCGGCAACATTCTCAAACAGTTAT 60.616 41.667 0.00 0.00 0.00 1.89
3032 3455 3.304391 GCGGCAACATTCTCAAACAGTTA 60.304 43.478 0.00 0.00 0.00 2.24
3033 3456 2.543653 GCGGCAACATTCTCAAACAGTT 60.544 45.455 0.00 0.00 0.00 3.16
3034 3457 1.001378 GCGGCAACATTCTCAAACAGT 60.001 47.619 0.00 0.00 0.00 3.55
3035 3458 1.267806 AGCGGCAACATTCTCAAACAG 59.732 47.619 1.45 0.00 0.00 3.16
3036 3459 1.317613 AGCGGCAACATTCTCAAACA 58.682 45.000 1.45 0.00 0.00 2.83
3037 3460 3.552604 TTAGCGGCAACATTCTCAAAC 57.447 42.857 1.45 0.00 0.00 2.93
3038 3461 4.217334 TCATTTAGCGGCAACATTCTCAAA 59.783 37.500 1.45 0.00 0.00 2.69
3039 3462 3.755905 TCATTTAGCGGCAACATTCTCAA 59.244 39.130 1.45 0.00 0.00 3.02
3040 3463 3.342719 TCATTTAGCGGCAACATTCTCA 58.657 40.909 1.45 0.00 0.00 3.27
3041 3464 4.558538 ATCATTTAGCGGCAACATTCTC 57.441 40.909 1.45 0.00 0.00 2.87
3042 3465 4.989279 AATCATTTAGCGGCAACATTCT 57.011 36.364 1.45 0.00 0.00 2.40
3043 3466 5.101628 TGAAATCATTTAGCGGCAACATTC 58.898 37.500 1.45 0.00 0.00 2.67
3044 3467 5.070770 TGAAATCATTTAGCGGCAACATT 57.929 34.783 1.45 0.00 0.00 2.71
3045 3468 4.717233 TGAAATCATTTAGCGGCAACAT 57.283 36.364 1.45 0.00 0.00 2.71
3046 3469 4.422840 CATGAAATCATTTAGCGGCAACA 58.577 39.130 1.45 0.00 33.61 3.33
3047 3470 3.243643 GCATGAAATCATTTAGCGGCAAC 59.756 43.478 1.45 0.00 33.61 4.17
3048 3471 3.119209 TGCATGAAATCATTTAGCGGCAA 60.119 39.130 1.45 0.00 33.61 4.52
3049 3472 2.426381 TGCATGAAATCATTTAGCGGCA 59.574 40.909 1.45 0.00 33.61 5.69
3050 3473 2.791004 GTGCATGAAATCATTTAGCGGC 59.209 45.455 0.00 0.00 33.61 6.53
3051 3474 3.792956 GTGTGCATGAAATCATTTAGCGG 59.207 43.478 0.00 0.00 33.61 5.52
3052 3475 4.665212 AGTGTGCATGAAATCATTTAGCG 58.335 39.130 0.00 0.00 33.61 4.26
3053 3476 6.758149 CAAAGTGTGCATGAAATCATTTAGC 58.242 36.000 0.00 0.00 33.61 3.09
3068 3491 3.256570 GGCTATAGCGGCAAAGTGTGC 62.257 57.143 18.30 0.00 44.89 4.57
3069 3492 0.657840 GGCTATAGCGGCAAAGTGTG 59.342 55.000 18.30 0.00 43.26 3.82
3070 3493 0.463833 GGGCTATAGCGGCAAAGTGT 60.464 55.000 18.30 0.00 43.26 3.55
3071 3494 1.498865 CGGGCTATAGCGGCAAAGTG 61.499 60.000 18.30 0.00 43.26 3.16
3072 3495 1.227556 CGGGCTATAGCGGCAAAGT 60.228 57.895 18.30 0.00 43.26 2.66
3073 3496 2.607892 GCGGGCTATAGCGGCAAAG 61.608 63.158 25.69 12.53 43.26 2.77
3074 3497 2.590575 GCGGGCTATAGCGGCAAA 60.591 61.111 25.69 0.00 43.26 3.68
3075 3498 4.619227 GGCGGGCTATAGCGGCAA 62.619 66.667 29.19 0.00 43.26 4.52
3077 3500 2.907897 CTATGGCGGGCTATAGCGGC 62.908 65.000 23.73 23.73 43.26 6.53
3078 3501 1.141881 CTATGGCGGGCTATAGCGG 59.858 63.158 18.30 13.46 43.26 5.52
3079 3502 4.814900 CTATGGCGGGCTATAGCG 57.185 61.111 18.30 6.94 43.26 4.26
3081 3504 1.264749 TGGGCTATGGCGGGCTATAG 61.265 60.000 16.85 16.85 39.52 1.31
3082 3505 1.229368 TGGGCTATGGCGGGCTATA 60.229 57.895 2.38 0.00 39.81 1.31
3083 3506 2.529136 TGGGCTATGGCGGGCTAT 60.529 61.111 2.38 0.00 39.81 2.97
3084 3507 3.241530 CTGGGCTATGGCGGGCTA 61.242 66.667 2.38 0.00 39.81 3.93
3087 3510 3.241530 TAGCTGGGCTATGGCGGG 61.242 66.667 0.00 0.00 40.44 6.13
3101 3524 6.856426 CGGCAACCTTTAAAAATAGCTATAGC 59.144 38.462 17.33 17.33 42.49 2.97
3102 3525 6.856426 GCGGCAACCTTTAAAAATAGCTATAG 59.144 38.462 6.68 0.00 0.00 1.31
3103 3526 6.544564 AGCGGCAACCTTTAAAAATAGCTATA 59.455 34.615 6.68 0.00 0.00 1.31
3104 3527 5.359860 AGCGGCAACCTTTAAAAATAGCTAT 59.640 36.000 0.00 0.00 0.00 2.97
3105 3528 4.703093 AGCGGCAACCTTTAAAAATAGCTA 59.297 37.500 1.45 0.00 0.00 3.32
3106 3529 3.509967 AGCGGCAACCTTTAAAAATAGCT 59.490 39.130 1.45 0.00 0.00 3.32
3107 3530 3.845178 AGCGGCAACCTTTAAAAATAGC 58.155 40.909 1.45 0.00 0.00 2.97
3108 3531 7.544217 ACATTTAGCGGCAACCTTTAAAAATAG 59.456 33.333 1.45 0.00 0.00 1.73
3109 3532 7.379750 ACATTTAGCGGCAACCTTTAAAAATA 58.620 30.769 1.45 0.00 0.00 1.40
3110 3533 6.227522 ACATTTAGCGGCAACCTTTAAAAAT 58.772 32.000 1.45 0.00 0.00 1.82
3111 3534 5.602628 ACATTTAGCGGCAACCTTTAAAAA 58.397 33.333 1.45 0.00 0.00 1.94
3112 3535 5.203060 ACATTTAGCGGCAACCTTTAAAA 57.797 34.783 1.45 0.00 0.00 1.52
3113 3536 4.278669 TGACATTTAGCGGCAACCTTTAAA 59.721 37.500 1.45 0.00 0.00 1.52
3114 3537 3.821600 TGACATTTAGCGGCAACCTTTAA 59.178 39.130 1.45 0.00 0.00 1.52
3115 3538 3.413327 TGACATTTAGCGGCAACCTTTA 58.587 40.909 1.45 0.00 0.00 1.85
3116 3539 2.235016 TGACATTTAGCGGCAACCTTT 58.765 42.857 1.45 0.00 0.00 3.11
3117 3540 1.904287 TGACATTTAGCGGCAACCTT 58.096 45.000 1.45 0.00 0.00 3.50
3118 3541 2.128771 ATGACATTTAGCGGCAACCT 57.871 45.000 1.45 0.00 0.00 3.50
3119 3542 2.287009 GCTATGACATTTAGCGGCAACC 60.287 50.000 1.45 0.00 33.37 3.77
3120 3543 2.287009 GGCTATGACATTTAGCGGCAAC 60.287 50.000 1.45 0.00 42.41 4.17
3121 3544 1.946768 GGCTATGACATTTAGCGGCAA 59.053 47.619 1.45 0.00 42.41 4.52
3122 3545 1.593196 GGCTATGACATTTAGCGGCA 58.407 50.000 1.45 0.00 42.41 5.69
3123 3546 0.875059 GGGCTATGACATTTAGCGGC 59.125 55.000 4.50 0.00 42.41 6.53
3124 3547 1.148310 CGGGCTATGACATTTAGCGG 58.852 55.000 4.50 0.00 42.41 5.52
3125 3548 0.512952 GCGGGCTATGACATTTAGCG 59.487 55.000 4.50 0.00 42.41 4.26
3126 3549 1.884235 AGCGGGCTATGACATTTAGC 58.116 50.000 2.09 2.09 41.08 3.09
3127 3550 7.667043 TTAAATAGCGGGCTATGACATTTAG 57.333 36.000 13.53 0.00 39.03 1.85
3128 3551 8.453238 TTTTAAATAGCGGGCTATGACATTTA 57.547 30.769 13.53 7.51 39.03 1.40
3129 3552 6.952773 TTTAAATAGCGGGCTATGACATTT 57.047 33.333 13.53 8.39 39.03 2.32
3130 3553 6.952773 TTTTAAATAGCGGGCTATGACATT 57.047 33.333 13.53 7.15 39.03 2.71
3131 3554 6.238925 GGTTTTTAAATAGCGGGCTATGACAT 60.239 38.462 13.53 0.00 39.03 3.06
3132 3555 5.066764 GGTTTTTAAATAGCGGGCTATGACA 59.933 40.000 13.53 0.41 39.03 3.58
3133 3556 5.298527 AGGTTTTTAAATAGCGGGCTATGAC 59.701 40.000 13.53 6.52 39.03 3.06
3134 3557 5.442391 AGGTTTTTAAATAGCGGGCTATGA 58.558 37.500 13.53 3.16 39.03 2.15
3135 3558 5.767816 AGGTTTTTAAATAGCGGGCTATG 57.232 39.130 13.53 0.00 39.03 2.23
3136 3559 5.889289 TGAAGGTTTTTAAATAGCGGGCTAT 59.111 36.000 7.36 7.36 40.63 2.97
3137 3560 5.124297 GTGAAGGTTTTTAAATAGCGGGCTA 59.876 40.000 2.42 2.42 0.00 3.93
3138 3561 4.082408 GTGAAGGTTTTTAAATAGCGGGCT 60.082 41.667 0.00 0.00 0.00 5.19
3139 3562 4.171005 GTGAAGGTTTTTAAATAGCGGGC 58.829 43.478 2.81 0.00 0.00 6.13
3140 3563 5.379732 TGTGAAGGTTTTTAAATAGCGGG 57.620 39.130 2.81 0.00 0.00 6.13
3141 3564 7.883229 ATTTGTGAAGGTTTTTAAATAGCGG 57.117 32.000 2.81 0.00 0.00 5.52
3171 3594 4.634883 GTCCGAGAGTAGTTCACATGAGTA 59.365 45.833 0.00 0.00 0.00 2.59
3179 3602 3.599730 TCGTAGTCCGAGAGTAGTTCA 57.400 47.619 0.00 0.00 41.60 3.18
3189 3612 4.201657 TGATCCTGTAATTCGTAGTCCGA 58.798 43.478 0.00 0.00 45.66 4.55
3197 3620 6.128035 TGTTTGTTGGATGATCCTGTAATTCG 60.128 38.462 13.44 0.00 37.46 3.34
3238 3661 8.036575 TCTATTTTTCTTTTGCAGGAATGGATG 58.963 33.333 0.00 0.00 0.00 3.51
3239 3662 8.137745 TCTATTTTTCTTTTGCAGGAATGGAT 57.862 30.769 0.00 0.00 0.00 3.41
3240 3663 7.537596 TCTATTTTTCTTTTGCAGGAATGGA 57.462 32.000 0.00 0.00 0.00 3.41
3241 3664 8.782339 ATTCTATTTTTCTTTTGCAGGAATGG 57.218 30.769 0.00 0.00 0.00 3.16
3242 3665 9.426837 TGATTCTATTTTTCTTTTGCAGGAATG 57.573 29.630 0.00 0.00 0.00 2.67
3244 3667 9.643693 GATGATTCTATTTTTCTTTTGCAGGAA 57.356 29.630 0.00 0.00 0.00 3.36
3245 3668 8.253113 GGATGATTCTATTTTTCTTTTGCAGGA 58.747 33.333 0.00 0.00 0.00 3.86
3246 3669 8.036575 TGGATGATTCTATTTTTCTTTTGCAGG 58.963 33.333 0.00 0.00 0.00 4.85
3247 3670 8.991243 TGGATGATTCTATTTTTCTTTTGCAG 57.009 30.769 0.00 0.00 0.00 4.41
3255 3678 9.956720 CCAAGTGTATGGATGATTCTATTTTTC 57.043 33.333 0.00 0.00 43.54 2.29
3256 3679 9.699410 TCCAAGTGTATGGATGATTCTATTTTT 57.301 29.630 0.00 0.00 44.52 1.94
3282 3705 4.022068 GGGTGTCATTTGTGATGTTGTGAT 60.022 41.667 0.00 0.00 0.00 3.06
3301 3724 3.642503 TAGTGGGGCGTTGGGGTG 61.643 66.667 0.00 0.00 0.00 4.61
3347 3770 1.338484 TGAGCTGAGATGTGGCTGTTC 60.338 52.381 0.00 0.00 36.37 3.18
3392 3817 3.119352 GGGAAAACACAGATGCTTCCATC 60.119 47.826 9.67 0.00 46.61 3.51
3402 3827 4.693566 GTGACGATAATGGGAAAACACAGA 59.306 41.667 0.00 0.00 0.00 3.41
3460 3885 6.122964 GTGCTCACCCTAAATCTAAAATCCT 58.877 40.000 0.00 0.00 0.00 3.24
3483 3908 0.598065 GCAAATGCAAGAAGGACGGT 59.402 50.000 0.00 0.00 41.59 4.83
3580 4015 1.394917 GCGACATGTTCACCATCTGAC 59.605 52.381 0.00 0.00 0.00 3.51
3589 4024 3.179048 CGTAATCTCAGCGACATGTTCA 58.821 45.455 0.00 0.00 0.00 3.18
3599 4034 2.526120 GCCGGTGCGTAATCTCAGC 61.526 63.158 1.90 0.00 0.00 4.26
3600 4035 1.153647 TGCCGGTGCGTAATCTCAG 60.154 57.895 1.90 0.00 41.78 3.35
3605 4040 2.125269 GGAGTGCCGGTGCGTAAT 60.125 61.111 1.90 0.00 41.78 1.89
3621 4056 1.132262 GTGATATGTTGTTGTGGCCGG 59.868 52.381 0.00 0.00 0.00 6.13
3622 4057 1.132262 GGTGATATGTTGTTGTGGCCG 59.868 52.381 0.00 0.00 0.00 6.13
3623 4058 1.476488 GGGTGATATGTTGTTGTGGCC 59.524 52.381 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.