Multiple sequence alignment - TraesCS2A01G299400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G299400 chr2A 100.000 4508 0 0 1 4508 515291584 515296091 0.000000e+00 8325.0
1 TraesCS2A01G299400 chr2A 96.444 225 8 0 1 225 30311866 30311642 5.510000e-99 372.0
2 TraesCS2A01G299400 chr2B 94.517 2517 126 4 1008 3518 451413809 451416319 0.000000e+00 3873.0
3 TraesCS2A01G299400 chr2B 82.772 267 20 12 743 989 451413496 451413756 9.820000e-52 215.0
4 TraesCS2A01G299400 chr2D 91.993 2735 153 26 807 3518 380064910 380067601 0.000000e+00 3777.0
5 TraesCS2A01G299400 chr2D 94.574 516 22 2 2229 2741 380071502 380072014 0.000000e+00 793.0
6 TraesCS2A01G299400 chr2D 84.864 588 63 12 225 799 380064237 380064811 1.820000e-158 569.0
7 TraesCS2A01G299400 chr2D 96.104 231 9 0 1 231 366061350 366061120 1.180000e-100 377.0
8 TraesCS2A01G299400 chr2D 92.891 211 13 2 3516 3725 380068170 380068379 5.670000e-79 305.0
9 TraesCS2A01G299400 chr2D 90.830 229 12 4 3738 3966 380068469 380068688 9.480000e-77 298.0
10 TraesCS2A01G299400 chr2D 90.654 107 10 0 4049 4155 380068785 380068891 4.700000e-30 143.0
11 TraesCS2A01G299400 chr7A 96.104 231 8 1 1 230 68891746 68891516 4.260000e-100 375.0
12 TraesCS2A01G299400 chr7A 96.053 228 9 0 1 228 215187896 215187669 5.510000e-99 372.0
13 TraesCS2A01G299400 chr7A 95.833 48 2 0 1522 1569 652163873 652163920 1.340000e-10 78.7
14 TraesCS2A01G299400 chr7A 83.951 81 9 4 1491 1569 652286843 652286921 1.740000e-09 75.0
15 TraesCS2A01G299400 chr7A 100.000 32 0 0 2258 2289 625534073 625534042 4.870000e-05 60.2
16 TraesCS2A01G299400 chr4D 96.087 230 9 0 1 230 43651483 43651712 4.260000e-100 375.0
17 TraesCS2A01G299400 chr6A 96.053 228 9 0 1 228 297643963 297643736 5.510000e-99 372.0
18 TraesCS2A01G299400 chr6A 96.053 228 9 0 1 228 441830323 441830096 5.510000e-99 372.0
19 TraesCS2A01G299400 chr5A 96.053 228 9 0 1 228 366030581 366030808 5.510000e-99 372.0
20 TraesCS2A01G299400 chr5A 93.023 43 3 0 1539 1581 554062621 554062579 3.760000e-06 63.9
21 TraesCS2A01G299400 chr1A 96.444 225 8 0 1 225 354954525 354954301 5.510000e-99 372.0
22 TraesCS2A01G299400 chr7B 82.418 91 16 0 1522 1612 616749473 616749383 3.740000e-11 80.5
23 TraesCS2A01G299400 chr7B 93.617 47 3 0 1523 1569 617557508 617557462 2.250000e-08 71.3
24 TraesCS2A01G299400 chr7B 97.059 34 1 0 716 749 714311696 714311663 1.750000e-04 58.4
25 TraesCS2A01G299400 chr7D 93.750 48 3 0 1522 1569 565617826 565617873 6.260000e-09 73.1
26 TraesCS2A01G299400 chr5D 93.023 43 3 0 1539 1581 438546934 438546892 3.760000e-06 63.9
27 TraesCS2A01G299400 chr3B 94.872 39 1 1 714 752 730035683 730035720 4.870000e-05 60.2
28 TraesCS2A01G299400 chr3D 92.308 39 2 1 714 752 142421564 142421527 2.000000e-03 54.7
29 TraesCS2A01G299400 chr1D 100.000 28 0 0 713 740 269518870 269518897 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G299400 chr2A 515291584 515296091 4507 False 8325.000000 8325 100.000000 1 4508 1 chr2A.!!$F1 4507
1 TraesCS2A01G299400 chr2B 451413496 451416319 2823 False 2044.000000 3873 88.644500 743 3518 2 chr2B.!!$F1 2775
2 TraesCS2A01G299400 chr2D 380064237 380072014 7777 False 980.833333 3777 90.967667 225 4155 6 chr2D.!!$F1 3930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 585 0.397114 TCGCCATGCCTCTCCTTCTA 60.397 55.0 0.00 0.0 0.00 2.10 F
577 586 0.683973 CGCCATGCCTCTCCTTCTAT 59.316 55.0 0.00 0.0 0.00 1.98 F
583 595 0.684535 GCCTCTCCTTCTATGCTCCC 59.315 60.0 0.00 0.0 0.00 4.30 F
1460 1631 0.730265 GACGTCACAGCCAACAACAA 59.270 50.0 11.55 0.0 0.00 2.83 F
2331 2502 0.174162 GGCATGGTGGATTGCTGAAC 59.826 55.0 0.00 0.0 38.88 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1537 1708 1.078848 GGTCGAAGCTCTGCCACAT 60.079 57.895 0.00 0.0 0.00 3.21 R
2097 2268 1.141657 AGCTGAGTGTTCCTTCTGCAA 59.858 47.619 6.22 0.0 0.00 4.08 R
2190 2361 1.417517 CCGTGGGGGTTATAGGGTAAC 59.582 57.143 0.00 0.0 0.00 2.50 R
2793 2967 0.249868 TCTTGTCGCCCTCACAACAG 60.250 55.000 0.00 0.0 30.49 3.16 R
3997 4820 0.100325 TCTGCTGTTTTGGTGTTGCG 59.900 50.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.503714 GGATTGGTTCCTATCCTTCACA 57.496 45.455 19.71 0.00 41.78 3.58
53 54 5.053978 GGATTGGTTCCTATCCTTCACAT 57.946 43.478 19.71 0.00 41.78 3.21
54 55 5.449553 GGATTGGTTCCTATCCTTCACATT 58.550 41.667 19.71 0.00 41.78 2.71
55 56 5.893824 GGATTGGTTCCTATCCTTCACATTT 59.106 40.000 19.71 0.00 41.78 2.32
56 57 6.039829 GGATTGGTTCCTATCCTTCACATTTC 59.960 42.308 19.71 0.00 41.78 2.17
57 58 5.512942 TGGTTCCTATCCTTCACATTTCA 57.487 39.130 0.00 0.00 0.00 2.69
58 59 6.078456 TGGTTCCTATCCTTCACATTTCAT 57.922 37.500 0.00 0.00 0.00 2.57
59 60 7.206789 TGGTTCCTATCCTTCACATTTCATA 57.793 36.000 0.00 0.00 0.00 2.15
60 61 7.282585 TGGTTCCTATCCTTCACATTTCATAG 58.717 38.462 0.00 0.00 0.00 2.23
61 62 6.712547 GGTTCCTATCCTTCACATTTCATAGG 59.287 42.308 0.00 0.00 35.93 2.57
62 63 7.420214 GGTTCCTATCCTTCACATTTCATAGGA 60.420 40.741 2.01 2.01 39.98 2.94
63 64 7.690454 TCCTATCCTTCACATTTCATAGGAA 57.310 36.000 3.47 0.00 39.17 3.36
64 65 8.101309 TCCTATCCTTCACATTTCATAGGAAA 57.899 34.615 4.85 4.85 46.36 3.13
65 66 8.556589 TCCTATCCTTCACATTTCATAGGAAAA 58.443 33.333 6.65 0.00 45.52 2.29
66 67 9.359653 CCTATCCTTCACATTTCATAGGAAAAT 57.640 33.333 6.65 0.00 45.52 1.82
84 85 8.512966 AGGAAAATAAAAATGAGCCTAGACTC 57.487 34.615 0.00 0.00 37.19 3.36
128 129 5.356882 TCAACCAAATGACATCTCGTTTC 57.643 39.130 0.00 0.00 33.97 2.78
129 130 5.063204 TCAACCAAATGACATCTCGTTTCT 58.937 37.500 0.00 0.00 33.97 2.52
130 131 5.530915 TCAACCAAATGACATCTCGTTTCTT 59.469 36.000 0.00 0.00 33.97 2.52
131 132 6.708502 TCAACCAAATGACATCTCGTTTCTTA 59.291 34.615 0.00 0.00 33.97 2.10
132 133 7.390440 TCAACCAAATGACATCTCGTTTCTTAT 59.610 33.333 0.00 0.00 33.97 1.73
133 134 7.687941 ACCAAATGACATCTCGTTTCTTATT 57.312 32.000 0.00 0.00 33.97 1.40
134 135 7.752695 ACCAAATGACATCTCGTTTCTTATTC 58.247 34.615 0.00 0.00 33.97 1.75
135 136 7.148239 ACCAAATGACATCTCGTTTCTTATTCC 60.148 37.037 0.00 0.00 33.97 3.01
136 137 7.066284 CCAAATGACATCTCGTTTCTTATTCCT 59.934 37.037 0.00 0.00 33.97 3.36
137 138 9.098355 CAAATGACATCTCGTTTCTTATTCCTA 57.902 33.333 0.00 0.00 33.97 2.94
138 139 8.649973 AATGACATCTCGTTTCTTATTCCTAC 57.350 34.615 0.00 0.00 0.00 3.18
139 140 7.406031 TGACATCTCGTTTCTTATTCCTACT 57.594 36.000 0.00 0.00 0.00 2.57
140 141 7.481642 TGACATCTCGTTTCTTATTCCTACTC 58.518 38.462 0.00 0.00 0.00 2.59
141 142 7.122204 TGACATCTCGTTTCTTATTCCTACTCA 59.878 37.037 0.00 0.00 0.00 3.41
142 143 8.012957 ACATCTCGTTTCTTATTCCTACTCAT 57.987 34.615 0.00 0.00 0.00 2.90
143 144 9.132923 ACATCTCGTTTCTTATTCCTACTCATA 57.867 33.333 0.00 0.00 0.00 2.15
144 145 9.619316 CATCTCGTTTCTTATTCCTACTCATAG 57.381 37.037 0.00 0.00 0.00 2.23
161 162 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
162 163 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
163 164 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
168 169 7.901029 AGGATTTGAGATACATGTCATATCGT 58.099 34.615 0.00 3.62 38.50 3.73
169 170 8.370940 AGGATTTGAGATACATGTCATATCGTT 58.629 33.333 0.00 0.00 38.50 3.85
170 171 8.993121 GGATTTGAGATACATGTCATATCGTTT 58.007 33.333 0.00 0.00 38.50 3.60
172 173 7.946655 TTGAGATACATGTCATATCGTTTCC 57.053 36.000 0.00 0.00 34.74 3.13
173 174 7.290110 TGAGATACATGTCATATCGTTTCCT 57.710 36.000 0.00 0.00 34.74 3.36
174 175 8.404107 TGAGATACATGTCATATCGTTTCCTA 57.596 34.615 0.00 0.00 34.74 2.94
175 176 9.025041 TGAGATACATGTCATATCGTTTCCTAT 57.975 33.333 0.00 0.00 34.74 2.57
205 206 8.763984 TTCCTATTCCTACGATAATCCTATCC 57.236 38.462 0.00 0.00 31.68 2.59
206 207 8.115490 TCCTATTCCTACGATAATCCTATCCT 57.885 38.462 0.00 0.00 31.68 3.24
207 208 9.234086 TCCTATTCCTACGATAATCCTATCCTA 57.766 37.037 0.00 0.00 31.68 2.94
211 212 9.937876 ATTCCTACGATAATCCTATCCTATGAA 57.062 33.333 0.00 0.00 31.68 2.57
212 213 8.749026 TCCTACGATAATCCTATCCTATGAAC 57.251 38.462 0.00 0.00 31.68 3.18
213 214 7.778853 TCCTACGATAATCCTATCCTATGAACC 59.221 40.741 0.00 0.00 31.68 3.62
214 215 7.560262 CCTACGATAATCCTATCCTATGAACCA 59.440 40.741 0.00 0.00 31.68 3.67
215 216 7.792364 ACGATAATCCTATCCTATGAACCAA 57.208 36.000 0.00 0.00 31.68 3.67
216 217 8.202461 ACGATAATCCTATCCTATGAACCAAA 57.798 34.615 0.00 0.00 31.68 3.28
217 218 8.656806 ACGATAATCCTATCCTATGAACCAAAA 58.343 33.333 0.00 0.00 31.68 2.44
218 219 9.155975 CGATAATCCTATCCTATGAACCAAAAG 57.844 37.037 0.00 0.00 31.68 2.27
221 222 6.500589 TCCTATCCTATGAACCAAAAGAGG 57.499 41.667 0.00 0.00 0.00 3.69
222 223 5.066593 CCTATCCTATGAACCAAAAGAGGC 58.933 45.833 0.00 0.00 0.00 4.70
223 224 3.366052 TCCTATGAACCAAAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
227 228 5.014755 TCCTATGAACCAAAAGAGGCCTAAA 59.985 40.000 4.42 0.00 0.00 1.85
274 278 6.964807 TTAGTAGCCTCGGTTGTCATATTA 57.035 37.500 0.00 0.00 0.00 0.98
275 279 5.864418 AGTAGCCTCGGTTGTCATATTAA 57.136 39.130 0.00 0.00 0.00 1.40
278 282 6.706270 AGTAGCCTCGGTTGTCATATTAATTG 59.294 38.462 0.00 0.00 0.00 2.32
344 349 3.849574 TGTCATATTCTCCCCTTTGACCA 59.150 43.478 0.00 0.00 34.11 4.02
352 357 3.117322 TCTCCCCTTTGACCATTGTTCAA 60.117 43.478 0.00 0.00 0.00 2.69
405 410 4.723248 GCAACTTAGTAATGCCACTTCAC 58.277 43.478 0.00 0.00 34.03 3.18
407 412 5.048713 GCAACTTAGTAATGCCACTTCACTT 60.049 40.000 0.00 0.00 34.03 3.16
414 419 1.967319 TGCCACTTCACTTCCTTGAC 58.033 50.000 0.00 0.00 0.00 3.18
416 421 1.202818 GCCACTTCACTTCCTTGACCT 60.203 52.381 0.00 0.00 0.00 3.85
422 427 4.884164 ACTTCACTTCCTTGACCTTTCTTG 59.116 41.667 0.00 0.00 0.00 3.02
423 428 4.771114 TCACTTCCTTGACCTTTCTTGA 57.229 40.909 0.00 0.00 0.00 3.02
427 432 2.418669 TCCTTGACCTTTCTTGAGGGT 58.581 47.619 0.00 0.00 41.31 4.34
431 436 4.038042 CCTTGACCTTTCTTGAGGGTTTTC 59.962 45.833 0.00 0.00 41.31 2.29
454 459 3.209410 CCCTATTCTTGTGGCTAAGCTG 58.791 50.000 0.00 0.00 0.00 4.24
509 518 2.004583 TATTTCAACGTGAGCTCCCG 57.995 50.000 17.36 17.36 0.00 5.14
519 528 1.218316 GAGCTCCCGGATGTTTCGT 59.782 57.895 0.73 0.00 0.00 3.85
520 529 1.079127 AGCTCCCGGATGTTTCGTG 60.079 57.895 0.73 0.00 0.00 4.35
540 549 1.966451 CCCAGACACCGCTTTGACC 60.966 63.158 0.00 0.00 0.00 4.02
562 571 2.023414 AACACCTCGTTCACTCGCCA 62.023 55.000 0.00 0.00 29.27 5.69
573 582 1.992277 ACTCGCCATGCCTCTCCTT 60.992 57.895 0.00 0.00 0.00 3.36
576 585 0.397114 TCGCCATGCCTCTCCTTCTA 60.397 55.000 0.00 0.00 0.00 2.10
577 586 0.683973 CGCCATGCCTCTCCTTCTAT 59.316 55.000 0.00 0.00 0.00 1.98
578 587 1.607509 CGCCATGCCTCTCCTTCTATG 60.608 57.143 0.00 0.00 0.00 2.23
579 588 1.881498 GCCATGCCTCTCCTTCTATGC 60.881 57.143 0.00 0.00 0.00 3.14
583 595 0.684535 GCCTCTCCTTCTATGCTCCC 59.315 60.000 0.00 0.00 0.00 4.30
603 615 1.754621 TCGAGCTCCGCCAAGAGAT 60.755 57.895 8.47 0.00 35.82 2.75
615 627 1.081892 CAAGAGATGGACAAGCCGTG 58.918 55.000 0.00 0.00 40.66 4.94
621 633 2.749621 AGATGGACAAGCCGTGAAATTC 59.250 45.455 0.00 0.00 40.66 2.17
623 635 2.582052 TGGACAAGCCGTGAAATTCTT 58.418 42.857 0.00 0.00 40.66 2.52
654 666 2.682836 TGACGTCGAGATTCATTGCAA 58.317 42.857 11.62 0.00 0.00 4.08
659 671 3.482598 CGTCGAGATTCATTGCAAGACAC 60.483 47.826 4.94 0.00 0.00 3.67
710 722 2.742589 GGTCACCATCGGAGAAAAGTTC 59.257 50.000 0.00 0.00 43.58 3.01
715 727 4.010349 ACCATCGGAGAAAAGTTCCATTC 58.990 43.478 0.00 0.00 43.58 2.67
725 737 4.846168 AAAGTTCCATTCTACTCCCTCC 57.154 45.455 0.00 0.00 0.00 4.30
739 751 9.866655 TTCTACTCCCTCCGTAACTAAATATAA 57.133 33.333 0.00 0.00 0.00 0.98
834 944 5.290158 CACGGTATAAACGCAGATGTTTACT 59.710 40.000 1.58 0.00 44.51 2.24
835 945 5.290158 ACGGTATAAACGCAGATGTTTACTG 59.710 40.000 1.58 0.00 44.51 2.74
891 1014 3.599285 TTCCGCGAACAGCCCGAAT 62.599 57.895 8.23 0.00 44.76 3.34
925 1048 1.802337 GCCAACCCTCGTTTTCACCC 61.802 60.000 0.00 0.00 0.00 4.61
945 1068 4.708421 ACCCATGAAGTCAATCCTCAAATG 59.292 41.667 0.00 0.00 0.00 2.32
947 1070 5.597182 CCCATGAAGTCAATCCTCAAATGAT 59.403 40.000 0.00 0.00 0.00 2.45
948 1071 6.461092 CCCATGAAGTCAATCCTCAAATGATG 60.461 42.308 0.00 0.00 0.00 3.07
949 1072 6.320418 CCATGAAGTCAATCCTCAAATGATGA 59.680 38.462 0.00 0.00 36.38 2.92
950 1073 7.014326 CCATGAAGTCAATCCTCAAATGATGAT 59.986 37.037 0.00 0.00 37.44 2.45
970 1093 4.693566 TGATTTACACTCGTTCCAACCATC 59.306 41.667 0.00 0.00 0.00 3.51
971 1094 2.357327 TACACTCGTTCCAACCATCG 57.643 50.000 0.00 0.00 0.00 3.84
989 1114 6.106673 ACCATCGATTATTCAAAGACTCGTT 58.893 36.000 0.00 0.00 0.00 3.85
990 1115 6.594159 ACCATCGATTATTCAAAGACTCGTTT 59.406 34.615 0.00 0.00 0.00 3.60
991 1116 7.119262 ACCATCGATTATTCAAAGACTCGTTTT 59.881 33.333 0.00 0.00 0.00 2.43
994 1119 7.507304 TCGATTATTCAAAGACTCGTTTTCAC 58.493 34.615 0.00 0.00 0.00 3.18
996 1121 6.928979 TTATTCAAAGACTCGTTTTCACCA 57.071 33.333 0.00 0.00 0.00 4.17
997 1122 5.828299 ATTCAAAGACTCGTTTTCACCAA 57.172 34.783 0.00 0.00 0.00 3.67
1024 1183 4.090588 TCCCGCGTCCCATTGACC 62.091 66.667 4.92 0.00 41.18 4.02
1026 1185 2.359354 CCGCGTCCCATTGACCAA 60.359 61.111 4.92 0.00 41.18 3.67
1077 1242 4.598894 CTCGCCATGCCTCTCCCG 62.599 72.222 0.00 0.00 0.00 5.14
1286 1451 0.921896 ACTCAGCTGGGCATATGGTT 59.078 50.000 15.27 0.00 0.00 3.67
1287 1452 1.133976 ACTCAGCTGGGCATATGGTTC 60.134 52.381 15.27 0.00 0.00 3.62
1288 1453 0.918258 TCAGCTGGGCATATGGTTCA 59.082 50.000 15.13 0.00 0.00 3.18
1289 1454 1.134007 TCAGCTGGGCATATGGTTCAG 60.134 52.381 15.13 0.00 0.00 3.02
1290 1455 2.036236 GCTGGGCATATGGTTCAGC 58.964 57.895 4.56 0.00 42.89 4.26
1291 1456 1.458639 GCTGGGCATATGGTTCAGCC 61.459 60.000 4.56 0.00 43.36 4.85
1458 1629 1.275657 CGACGTCACAGCCAACAAC 59.724 57.895 17.16 0.00 0.00 3.32
1459 1630 1.425267 CGACGTCACAGCCAACAACA 61.425 55.000 17.16 0.00 0.00 3.33
1460 1631 0.730265 GACGTCACAGCCAACAACAA 59.270 50.000 11.55 0.00 0.00 2.83
1471 1642 2.615869 CCAACAACAACAACAACAGGG 58.384 47.619 0.00 0.00 0.00 4.45
1537 1708 4.351938 CCAACGCCTCCGACGTGA 62.352 66.667 0.00 0.00 44.30 4.35
1714 1885 1.448540 GTCCAGATGCTGTGGGACG 60.449 63.158 0.00 0.00 40.29 4.79
1755 1926 4.754667 GGGGAGTGGAACGGCGAC 62.755 72.222 16.62 7.14 45.86 5.19
1775 1946 4.069232 CTTCAGCTCGGTGCCGGA 62.069 66.667 5.05 0.00 44.23 5.14
1806 1977 1.832912 CCACCTGATAGGCTCCACC 59.167 63.158 0.00 0.00 39.63 4.61
1860 2031 2.027625 CCACCTGCTCGACGAAACC 61.028 63.158 0.00 0.00 0.00 3.27
1903 2074 2.119611 TGTCCGGGCAGAGGAAGA 59.880 61.111 3.51 0.00 39.84 2.87
1906 2077 2.203126 CCGGGCAGAGGAAGATGC 60.203 66.667 0.00 0.00 41.80 3.91
1910 2081 1.606531 GGCAGAGGAAGATGCTGGT 59.393 57.895 0.00 0.00 42.19 4.00
1917 2088 0.747283 GGAAGATGCTGGTCTGGCAG 60.747 60.000 8.58 8.58 43.15 4.85
1920 2091 0.987081 AGATGCTGGTCTGGCAGGAT 60.987 55.000 15.73 0.00 43.15 3.24
1960 2131 1.909781 GTCTACGTCCACCCCACCA 60.910 63.158 0.00 0.00 0.00 4.17
1962 2133 2.924101 TACGTCCACCCCACCACC 60.924 66.667 0.00 0.00 0.00 4.61
2079 2250 1.065126 CCTGAGGATTGGGACCTTGAC 60.065 57.143 0.00 0.00 37.93 3.18
2193 2364 3.395702 ATGCCGGCCGTCAGGTTA 61.396 61.111 26.77 0.73 40.50 2.85
2202 2373 2.224137 GGCCGTCAGGTTACCCTATAAC 60.224 54.545 0.00 0.00 39.89 1.89
2209 2380 1.417517 GGTTACCCTATAACCCCCACG 59.582 57.143 4.75 0.00 40.71 4.94
2292 2463 1.477700 TGCACTGCATATTCCTTTGGC 59.522 47.619 0.00 0.00 31.71 4.52
2331 2502 0.174162 GGCATGGTGGATTGCTGAAC 59.826 55.000 0.00 0.00 38.88 3.18
2360 2534 0.379669 CGCCAGATTGATGGTGCTTC 59.620 55.000 0.00 0.00 43.47 3.86
2361 2535 1.760192 GCCAGATTGATGGTGCTTCT 58.240 50.000 0.00 0.00 42.75 2.85
2362 2536 2.097825 GCCAGATTGATGGTGCTTCTT 58.902 47.619 0.00 0.00 42.75 2.52
2450 2624 7.817418 ACAACAGTGTAGTTATCATTTTGGT 57.183 32.000 0.00 0.00 35.72 3.67
2480 2654 1.898574 CAGGCCTCAACGCTTTGGT 60.899 57.895 0.00 0.00 33.06 3.67
2494 2668 3.306166 CGCTTTGGTTATCTTGGTACTCG 59.694 47.826 0.00 0.00 0.00 4.18
2501 2675 4.278058 GTTATCTTGGTACTCGTCGTAGC 58.722 47.826 8.97 8.97 44.77 3.58
2544 2718 6.475402 GGAACAAAAGGTACAGTGAAACATTG 59.525 38.462 0.00 4.63 41.43 2.82
2619 2793 3.254060 GCGTGCAACTAGAGATTTCTCA 58.746 45.455 10.07 0.00 39.24 3.27
2664 2838 1.226746 GTTCTGTGTTCAAGGGGTCG 58.773 55.000 0.00 0.00 0.00 4.79
2688 2862 5.061064 GCTAAATGATTCGACCACTATAGCG 59.939 44.000 0.00 0.00 0.00 4.26
2793 2967 8.888716 ACAAATTTAGTCAAAATGGTTGGTTTC 58.111 29.630 0.00 0.00 37.85 2.78
2841 3015 2.546368 TGTCTACGAACACATGCCAAAC 59.454 45.455 0.00 0.00 0.00 2.93
2881 3055 0.595095 GTTCAGGAGCAGTGCCAAAG 59.405 55.000 12.58 0.00 0.00 2.77
2976 3150 3.722147 CCTGGACTACATCATACACTGC 58.278 50.000 0.00 0.00 0.00 4.40
3036 3210 2.461903 GTTCCTAAGATCGCCGACTTC 58.538 52.381 5.45 0.00 0.00 3.01
3135 3309 0.257039 AATGGATCAGTGGAGTGGCC 59.743 55.000 0.00 0.00 37.10 5.36
3192 3366 3.834813 TGGTGCTACTGGAGATCATATCC 59.165 47.826 0.00 0.00 37.35 2.59
3212 3386 1.153901 GGAGGATGAACGCGAACGA 60.154 57.895 15.93 0.00 43.93 3.85
3259 3433 4.405358 GCATTGTTTATTTCCCCATCCAGA 59.595 41.667 0.00 0.00 0.00 3.86
3285 3459 0.799393 GCAAGCTTCTCGAGGGAAAC 59.201 55.000 13.56 0.00 0.00 2.78
3324 3498 5.820947 GGATGATAGGTTAAACGGTGATGTT 59.179 40.000 0.00 0.00 0.00 2.71
3507 3681 1.066645 TCACACTCAGCATGCACCTAG 60.067 52.381 21.98 13.13 34.76 3.02
3521 4266 2.106332 CTAGCCTGGTAACCGCGG 59.894 66.667 26.86 26.86 36.06 6.46
3582 4328 6.782494 ACATATATGTCCATGTACCAGTCTCA 59.218 38.462 12.75 0.00 35.87 3.27
3596 4342 1.202698 AGTCTCAAAGAAGCCAAGCGT 60.203 47.619 0.00 0.00 0.00 5.07
3597 4343 1.195674 GTCTCAAAGAAGCCAAGCGTC 59.804 52.381 0.00 0.00 37.32 5.19
3598 4344 0.164647 CTCAAAGAAGCCAAGCGTCG 59.835 55.000 0.00 0.00 41.56 5.12
3599 4345 0.531974 TCAAAGAAGCCAAGCGTCGT 60.532 50.000 0.00 0.00 41.56 4.34
3600 4346 0.384725 CAAAGAAGCCAAGCGTCGTG 60.385 55.000 0.00 0.00 41.56 4.35
3614 4360 4.351938 CGTGCCTGTCGTTCCGGA 62.352 66.667 0.00 0.00 0.00 5.14
3617 4363 3.119096 GCCTGTCGTTCCGGAAGC 61.119 66.667 19.50 12.84 0.00 3.86
3655 4401 1.598130 AAGTGGTTGGCGAGCTGAC 60.598 57.895 5.40 0.00 0.00 3.51
3664 4410 2.103042 GCGAGCTGACATGGTGTCC 61.103 63.158 7.55 0.00 46.40 4.02
3669 4415 2.048597 TGACATGGTGTCCGTCGC 60.049 61.111 7.55 0.00 46.40 5.19
3686 4432 1.501337 CGCAGCAGAGCTTGTCACAA 61.501 55.000 0.00 0.00 36.40 3.33
3706 4452 3.802948 ACGATGTGTAGGTGGAAGATC 57.197 47.619 0.00 0.00 0.00 2.75
3707 4453 3.096852 ACGATGTGTAGGTGGAAGATCA 58.903 45.455 0.00 0.00 0.00 2.92
3725 4471 3.980646 TCACGGTGAAAACAAAGATGG 57.019 42.857 8.68 0.00 0.00 3.51
3727 4473 2.360801 CACGGTGAAAACAAAGATGGGT 59.639 45.455 0.74 0.00 0.00 4.51
3729 4475 4.036971 CACGGTGAAAACAAAGATGGGTAA 59.963 41.667 0.74 0.00 0.00 2.85
3733 4479 6.460399 CGGTGAAAACAAAGATGGGTAAAAGA 60.460 38.462 0.00 0.00 0.00 2.52
3734 4480 7.441836 GGTGAAAACAAAGATGGGTAAAAGAT 58.558 34.615 0.00 0.00 0.00 2.40
3736 4482 7.926018 GTGAAAACAAAGATGGGTAAAAGATGT 59.074 33.333 0.00 0.00 0.00 3.06
3782 4605 8.971073 CATCAAATTAACTAGTGGAGGGAAAAT 58.029 33.333 0.00 0.00 0.00 1.82
3802 4625 7.255451 GGAAAATATGTTCCAATGGCGATCTAA 60.255 37.037 18.45 0.00 45.57 2.10
3805 4628 3.531538 TGTTCCAATGGCGATCTAAGAC 58.468 45.455 0.00 0.00 0.00 3.01
3809 4632 1.068588 CAATGGCGATCTAAGACCGGA 59.931 52.381 9.46 0.00 0.00 5.14
3853 4676 1.597797 CTGCACGACCAATGGGCATT 61.598 55.000 5.73 0.00 37.90 3.56
3854 4677 0.322906 TGCACGACCAATGGGCATTA 60.323 50.000 5.73 0.00 37.90 1.90
3857 4680 1.815613 CACGACCAATGGGCATTACAA 59.184 47.619 5.73 0.00 37.90 2.41
3862 4685 1.134175 CCAATGGGCATTACAACGACC 59.866 52.381 0.00 0.00 0.00 4.79
3863 4686 1.091537 AATGGGCATTACAACGACCG 58.908 50.000 0.00 0.00 0.00 4.79
3864 4687 0.250793 ATGGGCATTACAACGACCGA 59.749 50.000 0.00 0.00 0.00 4.69
3865 4688 0.671163 TGGGCATTACAACGACCGAC 60.671 55.000 0.00 0.00 0.00 4.79
3890 4713 6.183360 CGTCGTCTCGTCTTCCTAGAATATAG 60.183 46.154 0.00 0.00 30.65 1.31
3899 4722 9.709495 CGTCTTCCTAGAATATAGTACTACTGT 57.291 37.037 4.31 0.00 30.65 3.55
3938 4761 9.883142 AATAATTTTTGTTTGACAGTTTCCTGA 57.117 25.926 0.00 0.00 41.50 3.86
3939 4762 9.883142 ATAATTTTTGTTTGACAGTTTCCTGAA 57.117 25.926 0.00 0.00 41.50 3.02
3961 4784 9.831737 CTGAATGAACCTAAAATAAGTTGACAG 57.168 33.333 0.00 0.00 0.00 3.51
3966 4789 5.321927 ACCTAAAATAAGTTGACAGTGGGG 58.678 41.667 0.00 0.00 0.00 4.96
3967 4790 4.157840 CCTAAAATAAGTTGACAGTGGGGC 59.842 45.833 0.00 0.00 0.00 5.80
3968 4791 2.969821 AATAAGTTGACAGTGGGGCA 57.030 45.000 0.00 0.00 0.00 5.36
3969 4792 2.200373 ATAAGTTGACAGTGGGGCAC 57.800 50.000 0.00 0.00 34.10 5.01
3970 4793 0.250124 TAAGTTGACAGTGGGGCACG 60.250 55.000 0.00 0.00 39.64 5.34
3971 4794 2.958578 AAGTTGACAGTGGGGCACGG 62.959 60.000 0.00 0.00 39.64 4.94
3972 4795 4.947147 TTGACAGTGGGGCACGGC 62.947 66.667 0.00 0.00 39.64 5.68
3982 4805 4.090057 GGCACGGCGCAAGAACTC 62.090 66.667 10.83 0.00 45.17 3.01
3983 4806 3.345808 GCACGGCGCAAGAACTCA 61.346 61.111 10.83 0.00 41.79 3.41
3984 4807 2.892334 GCACGGCGCAAGAACTCAA 61.892 57.895 10.83 0.00 41.79 3.02
3985 4808 1.205064 CACGGCGCAAGAACTCAAG 59.795 57.895 10.83 0.00 43.02 3.02
3986 4809 1.227556 ACGGCGCAAGAACTCAAGT 60.228 52.632 10.83 0.00 43.02 3.16
3987 4810 1.205064 CGGCGCAAGAACTCAAGTG 59.795 57.895 10.83 0.00 43.02 3.16
3988 4811 1.221466 CGGCGCAAGAACTCAAGTGA 61.221 55.000 10.83 0.00 43.02 3.41
3989 4812 1.160137 GGCGCAAGAACTCAAGTGAT 58.840 50.000 10.83 0.00 43.02 3.06
3990 4813 1.129437 GGCGCAAGAACTCAAGTGATC 59.871 52.381 10.83 0.00 43.02 2.92
3991 4814 2.072298 GCGCAAGAACTCAAGTGATCT 58.928 47.619 0.30 0.00 43.02 2.75
3992 4815 2.159734 GCGCAAGAACTCAAGTGATCTG 60.160 50.000 0.30 0.00 43.02 2.90
3993 4816 2.159734 CGCAAGAACTCAAGTGATCTGC 60.160 50.000 0.00 0.00 43.02 4.26
3994 4817 3.072944 GCAAGAACTCAAGTGATCTGCT 58.927 45.455 0.00 0.00 0.00 4.24
3995 4818 3.120269 GCAAGAACTCAAGTGATCTGCTG 60.120 47.826 0.00 0.00 0.00 4.41
3996 4819 3.331478 AGAACTCAAGTGATCTGCTGG 57.669 47.619 0.00 0.00 0.00 4.85
3997 4820 1.736681 GAACTCAAGTGATCTGCTGGC 59.263 52.381 0.00 0.00 0.00 4.85
3998 4821 0.390866 ACTCAAGTGATCTGCTGGCG 60.391 55.000 0.00 0.00 0.00 5.69
4008 4831 3.143515 TGCTGGCGCAACACCAAA 61.144 55.556 10.83 0.00 44.62 3.28
4021 4844 2.017049 ACACCAAAACAGCAGAGACAC 58.983 47.619 0.00 0.00 0.00 3.67
4022 4845 1.334869 CACCAAAACAGCAGAGACACC 59.665 52.381 0.00 0.00 0.00 4.16
4024 4847 1.334869 CCAAAACAGCAGAGACACCAC 59.665 52.381 0.00 0.00 0.00 4.16
4027 4850 0.107456 AACAGCAGAGACACCACCAG 59.893 55.000 0.00 0.00 0.00 4.00
4028 4851 0.760567 ACAGCAGAGACACCACCAGA 60.761 55.000 0.00 0.00 0.00 3.86
4029 4852 0.612229 CAGCAGAGACACCACCAGAT 59.388 55.000 0.00 0.00 0.00 2.90
4030 4853 1.002888 CAGCAGAGACACCACCAGATT 59.997 52.381 0.00 0.00 0.00 2.40
4031 4854 1.002888 AGCAGAGACACCACCAGATTG 59.997 52.381 0.00 0.00 0.00 2.67
4033 4856 2.355513 GCAGAGACACCACCAGATTGAT 60.356 50.000 0.00 0.00 0.00 2.57
4034 4857 3.268330 CAGAGACACCACCAGATTGATG 58.732 50.000 0.00 0.00 0.00 3.07
4035 4858 2.909006 AGAGACACCACCAGATTGATGT 59.091 45.455 0.00 0.00 0.00 3.06
4036 4859 4.081476 CAGAGACACCACCAGATTGATGTA 60.081 45.833 0.00 0.00 0.00 2.29
4037 4860 4.161189 AGAGACACCACCAGATTGATGTAG 59.839 45.833 0.00 0.00 0.00 2.74
4038 4861 4.096681 AGACACCACCAGATTGATGTAGA 58.903 43.478 0.00 0.00 0.00 2.59
4039 4862 4.161189 AGACACCACCAGATTGATGTAGAG 59.839 45.833 0.00 0.00 0.00 2.43
4040 4863 3.840666 ACACCACCAGATTGATGTAGAGT 59.159 43.478 0.00 0.00 0.00 3.24
4042 4865 5.221925 ACACCACCAGATTGATGTAGAGTTT 60.222 40.000 0.00 0.00 0.00 2.66
4044 4867 7.050377 CACCACCAGATTGATGTAGAGTTTAT 58.950 38.462 0.00 0.00 0.00 1.40
4046 4869 8.768397 ACCACCAGATTGATGTAGAGTTTATTA 58.232 33.333 0.00 0.00 0.00 0.98
4047 4870 9.046296 CCACCAGATTGATGTAGAGTTTATTAC 57.954 37.037 0.00 0.00 0.00 1.89
4048 4871 8.755941 CACCAGATTGATGTAGAGTTTATTACG 58.244 37.037 0.00 0.00 0.00 3.18
4049 4872 8.475639 ACCAGATTGATGTAGAGTTTATTACGT 58.524 33.333 0.00 0.00 0.00 3.57
4050 4873 9.961265 CCAGATTGATGTAGAGTTTATTACGTA 57.039 33.333 0.00 0.00 0.00 3.57
4082 4952 7.050377 TGAATTTAACAAACTGAAAATGGGCA 58.950 30.769 0.00 0.00 0.00 5.36
4098 4968 2.875933 TGGGCAAGTTTTGAGACTAACG 59.124 45.455 0.00 0.00 0.00 3.18
4099 4969 2.225727 GGGCAAGTTTTGAGACTAACGG 59.774 50.000 0.00 0.00 0.00 4.44
4131 5001 6.072508 GCTATTGATTGTCTTTTGAGTGGACA 60.073 38.462 0.00 0.00 38.07 4.02
4139 5009 6.822442 TGTCTTTTGAGTGGACATGTTACTA 58.178 36.000 14.40 1.06 35.44 1.82
4141 5011 6.929606 GTCTTTTGAGTGGACATGTTACTACT 59.070 38.462 14.40 9.41 0.00 2.57
4143 5013 8.812972 TCTTTTGAGTGGACATGTTACTACTAT 58.187 33.333 14.40 0.00 0.00 2.12
4144 5014 8.997621 TTTTGAGTGGACATGTTACTACTATC 57.002 34.615 14.40 5.49 0.00 2.08
4148 5018 7.396339 TGAGTGGACATGTTACTACTATCAGTT 59.604 37.037 14.40 0.00 0.00 3.16
4320 7397 8.947055 AATGTTGCAGAGTTTTAAAATCTGTT 57.053 26.923 27.87 15.86 41.99 3.16
4321 7398 8.947055 ATGTTGCAGAGTTTTAAAATCTGTTT 57.053 26.923 27.87 11.89 41.99 2.83
4323 7400 9.515020 TGTTGCAGAGTTTTAAAATCTGTTTAG 57.485 29.630 27.87 10.03 41.99 1.85
4324 7401 9.516314 GTTGCAGAGTTTTAAAATCTGTTTAGT 57.484 29.630 27.87 0.00 41.99 2.24
4325 7402 9.515020 TTGCAGAGTTTTAAAATCTGTTTAGTG 57.485 29.630 27.87 9.57 41.99 2.74
4326 7403 8.898761 TGCAGAGTTTTAAAATCTGTTTAGTGA 58.101 29.630 27.87 8.33 41.99 3.41
4341 7418 9.430623 TCTGTTTAGTGAATTACGAAATGATCA 57.569 29.630 0.00 0.00 36.50 2.92
4343 7420 9.986833 TGTTTAGTGAATTACGAAATGATCATG 57.013 29.630 9.46 0.00 36.50 3.07
4423 7500 9.804758 AAAAATATTCACCAACTGTAAAAACGA 57.195 25.926 0.00 0.00 0.00 3.85
4424 7501 9.974980 AAAATATTCACCAACTGTAAAAACGAT 57.025 25.926 0.00 0.00 0.00 3.73
4426 7503 6.627395 ATTCACCAACTGTAAAAACGATGA 57.373 33.333 0.00 0.00 0.00 2.92
4427 7504 5.666969 TCACCAACTGTAAAAACGATGAG 57.333 39.130 0.00 0.00 0.00 2.90
4428 7505 5.361427 TCACCAACTGTAAAAACGATGAGA 58.639 37.500 0.00 0.00 0.00 3.27
4430 7507 6.485313 TCACCAACTGTAAAAACGATGAGATT 59.515 34.615 0.00 0.00 0.00 2.40
4431 7508 7.012894 TCACCAACTGTAAAAACGATGAGATTT 59.987 33.333 0.00 0.00 0.00 2.17
4434 7511 9.840427 CCAACTGTAAAAACGATGAGATTTAAT 57.160 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.603201 TGAAATGTGAAGGATAGGAACCAATC 59.397 38.462 0.00 0.00 0.00 2.67
33 34 6.493166 TGAAATGTGAAGGATAGGAACCAAT 58.507 36.000 0.00 0.00 0.00 3.16
34 35 5.886609 TGAAATGTGAAGGATAGGAACCAA 58.113 37.500 0.00 0.00 0.00 3.67
35 36 5.512942 TGAAATGTGAAGGATAGGAACCA 57.487 39.130 0.00 0.00 0.00 3.67
36 37 6.712547 CCTATGAAATGTGAAGGATAGGAACC 59.287 42.308 0.00 0.00 36.16 3.62
37 38 7.509546 TCCTATGAAATGTGAAGGATAGGAAC 58.490 38.462 0.00 0.00 38.86 3.62
38 39 7.690454 TCCTATGAAATGTGAAGGATAGGAA 57.310 36.000 0.00 0.00 38.86 3.36
39 40 7.690454 TTCCTATGAAATGTGAAGGATAGGA 57.310 36.000 0.00 0.00 39.66 2.94
40 41 8.752005 TTTTCCTATGAAATGTGAAGGATAGG 57.248 34.615 0.00 0.00 40.08 2.57
58 59 9.614792 GAGTCTAGGCTCATTTTTATTTTCCTA 57.385 33.333 19.57 0.00 35.67 2.94
59 60 8.109634 TGAGTCTAGGCTCATTTTTATTTTCCT 58.890 33.333 23.07 0.00 40.23 3.36
60 61 8.281212 TGAGTCTAGGCTCATTTTTATTTTCC 57.719 34.615 23.07 0.00 40.23 3.13
63 64 9.466497 TCATTGAGTCTAGGCTCATTTTTATTT 57.534 29.630 26.91 3.37 43.99 1.40
64 65 9.466497 TTCATTGAGTCTAGGCTCATTTTTATT 57.534 29.630 26.91 4.66 43.99 1.40
65 66 9.466497 TTTCATTGAGTCTAGGCTCATTTTTAT 57.534 29.630 26.91 14.49 43.99 1.40
66 67 8.862325 TTTCATTGAGTCTAGGCTCATTTTTA 57.138 30.769 26.91 12.75 43.99 1.52
67 68 7.765695 TTTCATTGAGTCTAGGCTCATTTTT 57.234 32.000 26.91 10.30 43.99 1.94
68 69 7.765695 TTTTCATTGAGTCTAGGCTCATTTT 57.234 32.000 26.91 12.69 43.99 1.82
69 70 7.765695 TTTTTCATTGAGTCTAGGCTCATTT 57.234 32.000 26.91 15.12 43.99 2.32
105 106 4.749245 AACGAGATGTCATTTGGTTGAC 57.251 40.909 3.39 0.00 45.05 3.18
106 107 5.063204 AGAAACGAGATGTCATTTGGTTGA 58.937 37.500 4.80 0.00 0.00 3.18
107 108 5.362556 AGAAACGAGATGTCATTTGGTTG 57.637 39.130 4.80 0.00 0.00 3.77
108 109 7.687941 ATAAGAAACGAGATGTCATTTGGTT 57.312 32.000 0.00 0.00 0.00 3.67
109 110 7.148239 GGAATAAGAAACGAGATGTCATTTGGT 60.148 37.037 0.00 0.00 0.00 3.67
110 111 7.066284 AGGAATAAGAAACGAGATGTCATTTGG 59.934 37.037 0.00 0.00 0.00 3.28
111 112 7.978982 AGGAATAAGAAACGAGATGTCATTTG 58.021 34.615 0.00 0.00 0.00 2.32
112 113 9.099454 GTAGGAATAAGAAACGAGATGTCATTT 57.901 33.333 0.00 0.00 0.00 2.32
113 114 8.478877 AGTAGGAATAAGAAACGAGATGTCATT 58.521 33.333 0.00 0.00 0.00 2.57
114 115 8.012957 AGTAGGAATAAGAAACGAGATGTCAT 57.987 34.615 0.00 0.00 0.00 3.06
115 116 7.122204 TGAGTAGGAATAAGAAACGAGATGTCA 59.878 37.037 0.00 0.00 0.00 3.58
116 117 7.481642 TGAGTAGGAATAAGAAACGAGATGTC 58.518 38.462 0.00 0.00 0.00 3.06
117 118 7.406031 TGAGTAGGAATAAGAAACGAGATGT 57.594 36.000 0.00 0.00 0.00 3.06
118 119 9.619316 CTATGAGTAGGAATAAGAAACGAGATG 57.381 37.037 0.00 0.00 0.00 2.90
135 136 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
136 137 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
137 138 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
142 143 9.025041 ACGATATGACATGTATCTCAAATCCTA 57.975 33.333 0.00 0.00 0.00 2.94
143 144 7.901029 ACGATATGACATGTATCTCAAATCCT 58.099 34.615 0.00 0.00 0.00 3.24
144 145 8.539770 AACGATATGACATGTATCTCAAATCC 57.460 34.615 0.00 0.00 0.00 3.01
146 147 8.993121 GGAAACGATATGACATGTATCTCAAAT 58.007 33.333 0.00 0.00 0.00 2.32
147 148 8.204160 AGGAAACGATATGACATGTATCTCAAA 58.796 33.333 0.00 0.00 0.00 2.69
148 149 7.726216 AGGAAACGATATGACATGTATCTCAA 58.274 34.615 0.00 0.00 0.00 3.02
149 150 7.290110 AGGAAACGATATGACATGTATCTCA 57.710 36.000 0.00 0.00 0.00 3.27
179 180 9.369672 GGATAGGATTATCGTAGGAATAGGAAT 57.630 37.037 1.23 0.00 37.20 3.01
180 181 8.566979 AGGATAGGATTATCGTAGGAATAGGAA 58.433 37.037 1.23 0.00 37.20 3.36
181 182 8.115490 AGGATAGGATTATCGTAGGAATAGGA 57.885 38.462 1.23 0.00 37.20 2.94
185 186 9.937876 TTCATAGGATAGGATTATCGTAGGAAT 57.062 33.333 14.87 0.00 44.20 3.01
186 187 9.186837 GTTCATAGGATAGGATTATCGTAGGAA 57.813 37.037 14.87 14.87 45.40 3.36
187 188 7.778853 GGTTCATAGGATAGGATTATCGTAGGA 59.221 40.741 7.24 7.24 41.67 2.94
188 189 7.560262 TGGTTCATAGGATAGGATTATCGTAGG 59.440 40.741 1.23 3.78 39.00 3.18
189 190 8.521170 TGGTTCATAGGATAGGATTATCGTAG 57.479 38.462 1.23 0.00 39.00 3.51
190 191 8.888836 TTGGTTCATAGGATAGGATTATCGTA 57.111 34.615 0.00 0.00 39.58 3.43
191 192 7.792364 TTGGTTCATAGGATAGGATTATCGT 57.208 36.000 0.00 0.00 37.20 3.73
192 193 9.155975 CTTTTGGTTCATAGGATAGGATTATCG 57.844 37.037 0.00 0.00 37.20 2.92
195 196 8.660435 CCTCTTTTGGTTCATAGGATAGGATTA 58.340 37.037 0.00 0.00 28.27 1.75
196 197 7.521669 CCTCTTTTGGTTCATAGGATAGGATT 58.478 38.462 0.00 0.00 28.27 3.01
197 198 6.466470 GCCTCTTTTGGTTCATAGGATAGGAT 60.466 42.308 0.00 0.00 28.27 3.24
198 199 5.163195 GCCTCTTTTGGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
199 200 5.066593 GCCTCTTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
200 201 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
201 202 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
202 203 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
203 204 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
204 205 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
205 206 7.993183 TCTATTTAGGCCTCTTTTGGTTCATAG 59.007 37.037 9.68 1.81 0.00 2.23
206 207 7.773690 GTCTATTTAGGCCTCTTTTGGTTCATA 59.226 37.037 9.68 0.00 0.00 2.15
207 208 6.603599 GTCTATTTAGGCCTCTTTTGGTTCAT 59.396 38.462 9.68 0.00 0.00 2.57
208 209 5.944007 GTCTATTTAGGCCTCTTTTGGTTCA 59.056 40.000 9.68 0.00 0.00 3.18
209 210 6.181190 AGTCTATTTAGGCCTCTTTTGGTTC 58.819 40.000 9.68 0.00 0.00 3.62
210 211 6.140968 AGTCTATTTAGGCCTCTTTTGGTT 57.859 37.500 9.68 0.00 0.00 3.67
211 212 5.780958 AGTCTATTTAGGCCTCTTTTGGT 57.219 39.130 9.68 0.00 0.00 3.67
212 213 5.358160 CCAAGTCTATTTAGGCCTCTTTTGG 59.642 44.000 9.68 9.69 0.00 3.28
213 214 5.946377 ACCAAGTCTATTTAGGCCTCTTTTG 59.054 40.000 9.68 4.19 0.00 2.44
214 215 6.140968 ACCAAGTCTATTTAGGCCTCTTTT 57.859 37.500 9.68 0.00 0.00 2.27
215 216 5.780958 ACCAAGTCTATTTAGGCCTCTTT 57.219 39.130 9.68 0.00 0.00 2.52
216 217 5.780958 AACCAAGTCTATTTAGGCCTCTT 57.219 39.130 9.68 0.56 0.00 2.85
217 218 6.615726 TGATAACCAAGTCTATTTAGGCCTCT 59.384 38.462 9.68 0.00 0.00 3.69
218 219 6.827727 TGATAACCAAGTCTATTTAGGCCTC 58.172 40.000 9.68 0.00 0.00 4.70
219 220 6.824958 TGATAACCAAGTCTATTTAGGCCT 57.175 37.500 11.78 11.78 0.00 5.19
220 221 9.740710 AATATGATAACCAAGTCTATTTAGGCC 57.259 33.333 0.00 0.00 0.00 5.19
253 254 5.864418 TTAATATGACAACCGAGGCTACT 57.136 39.130 0.00 0.00 0.00 2.57
274 278 9.427821 TTGTATACTAACCCCAATAATGCAATT 57.572 29.630 4.17 0.00 41.28 2.32
275 279 9.600432 ATTGTATACTAACCCCAATAATGCAAT 57.400 29.630 4.17 0.00 0.00 3.56
316 321 6.886459 TCAAAGGGGAGAATATGACAGAAAAG 59.114 38.462 0.00 0.00 0.00 2.27
325 330 5.203528 ACAATGGTCAAAGGGGAGAATATG 58.796 41.667 0.00 0.00 0.00 1.78
331 336 2.875296 TGAACAATGGTCAAAGGGGAG 58.125 47.619 0.00 0.00 0.00 4.30
352 357 7.122715 TGGCTACATGAATATGGTAAAAACCT 58.877 34.615 0.00 0.00 38.66 3.50
385 390 5.705905 GGAAGTGAAGTGGCATTACTAAGTT 59.294 40.000 0.00 0.00 0.00 2.66
400 405 5.126067 TCAAGAAAGGTCAAGGAAGTGAAG 58.874 41.667 0.00 0.00 0.00 3.02
405 410 3.181439 ACCCTCAAGAAAGGTCAAGGAAG 60.181 47.826 0.00 0.00 34.34 3.46
407 412 2.418669 ACCCTCAAGAAAGGTCAAGGA 58.581 47.619 0.00 0.00 34.34 3.36
414 419 2.628178 GGGTGAAAACCCTCAAGAAAGG 59.372 50.000 6.68 0.00 46.39 3.11
427 432 4.112634 AGCCACAAGAATAGGGTGAAAA 57.887 40.909 0.00 0.00 34.52 2.29
431 436 2.945668 GCTTAGCCACAAGAATAGGGTG 59.054 50.000 0.00 0.00 34.52 4.61
483 492 7.758076 CGGGAGCTCACGTTGAAATATTATATA 59.242 37.037 30.07 0.00 38.11 0.86
494 503 1.982395 ATCCGGGAGCTCACGTTGA 60.982 57.895 34.48 25.89 42.08 3.18
499 508 1.084370 CGAAACATCCGGGAGCTCAC 61.084 60.000 17.19 11.90 0.00 3.51
509 518 1.270625 TGTCTGGGACACGAAACATCC 60.271 52.381 0.00 0.00 37.67 3.51
519 528 1.227823 CAAAGCGGTGTCTGGGACA 60.228 57.895 0.00 0.00 40.50 4.02
520 529 1.070786 TCAAAGCGGTGTCTGGGAC 59.929 57.895 0.00 0.00 0.00 4.46
530 539 0.535102 AGGTGTTCAGGTCAAAGCGG 60.535 55.000 0.00 0.00 0.00 5.52
531 540 0.868406 GAGGTGTTCAGGTCAAAGCG 59.132 55.000 0.00 0.00 0.00 4.68
533 542 2.240493 ACGAGGTGTTCAGGTCAAAG 57.760 50.000 0.00 0.00 0.00 2.77
555 564 1.965754 GAAGGAGAGGCATGGCGAGT 61.966 60.000 14.30 1.90 0.00 4.18
556 565 1.227497 GAAGGAGAGGCATGGCGAG 60.227 63.158 14.30 0.00 0.00 5.03
558 567 0.683973 ATAGAAGGAGAGGCATGGCG 59.316 55.000 14.30 0.00 0.00 5.69
562 571 1.977129 GGAGCATAGAAGGAGAGGCAT 59.023 52.381 0.00 0.00 0.00 4.40
603 615 2.270352 AGAATTTCACGGCTTGTCCA 57.730 45.000 0.00 0.00 34.01 4.02
605 617 4.328983 TCGATAAGAATTTCACGGCTTGTC 59.671 41.667 0.00 0.00 0.00 3.18
615 627 7.178712 ACGTCATGGAATCGATAAGAATTTC 57.821 36.000 0.00 0.00 0.00 2.17
621 633 3.885358 TCGACGTCATGGAATCGATAAG 58.115 45.455 17.16 0.00 38.59 1.73
623 635 3.135994 TCTCGACGTCATGGAATCGATA 58.864 45.455 17.16 6.88 42.26 2.92
676 688 1.644786 GGTGACCGCGCTGCTATTTT 61.645 55.000 5.56 0.00 0.00 1.82
686 698 2.829043 TTTCTCCGATGGTGACCGCG 62.829 60.000 9.35 9.35 0.00 6.46
687 699 0.672401 TTTTCTCCGATGGTGACCGC 60.672 55.000 0.00 0.00 0.00 5.68
688 700 1.337823 ACTTTTCTCCGATGGTGACCG 60.338 52.381 0.00 0.00 0.00 4.79
689 701 2.474410 ACTTTTCTCCGATGGTGACC 57.526 50.000 0.00 0.00 0.00 4.02
690 702 2.742589 GGAACTTTTCTCCGATGGTGAC 59.257 50.000 0.00 0.00 0.00 3.67
691 703 2.370519 TGGAACTTTTCTCCGATGGTGA 59.629 45.455 0.00 0.00 35.55 4.02
692 704 2.778299 TGGAACTTTTCTCCGATGGTG 58.222 47.619 0.00 0.00 35.55 4.17
710 722 3.297736 AGTTACGGAGGGAGTAGAATGG 58.702 50.000 0.00 0.00 0.00 3.16
715 727 8.738106 CCTTATATTTAGTTACGGAGGGAGTAG 58.262 40.741 0.00 0.00 0.00 2.57
823 933 3.303990 GGTGTGTGTGCAGTAAACATCTG 60.304 47.826 0.00 0.00 36.18 2.90
825 935 2.878406 AGGTGTGTGTGCAGTAAACATC 59.122 45.455 0.00 0.00 0.00 3.06
834 944 4.000325 GTGATAATGTAGGTGTGTGTGCA 59.000 43.478 0.00 0.00 0.00 4.57
835 945 4.000325 TGTGATAATGTAGGTGTGTGTGC 59.000 43.478 0.00 0.00 0.00 4.57
836 946 4.091365 CGTGTGATAATGTAGGTGTGTGTG 59.909 45.833 0.00 0.00 0.00 3.82
888 1011 3.502237 CAACTTGTGCTGCCCATTC 57.498 52.632 0.00 0.00 0.00 2.67
912 1035 2.484264 GACTTCATGGGTGAAAACGAGG 59.516 50.000 0.00 0.00 43.39 4.63
925 1048 7.329588 TCATCATTTGAGGATTGACTTCATG 57.670 36.000 0.00 0.00 34.68 3.07
945 1068 4.693566 TGGTTGGAACGAGTGTAAATCATC 59.306 41.667 0.00 0.00 0.00 2.92
947 1070 4.074627 TGGTTGGAACGAGTGTAAATCA 57.925 40.909 0.00 0.00 0.00 2.57
948 1071 4.201685 CGATGGTTGGAACGAGTGTAAATC 60.202 45.833 0.00 0.00 0.00 2.17
949 1072 3.682858 CGATGGTTGGAACGAGTGTAAAT 59.317 43.478 0.00 0.00 0.00 1.40
950 1073 3.061322 CGATGGTTGGAACGAGTGTAAA 58.939 45.455 0.00 0.00 0.00 2.01
970 1093 6.736853 GGTGAAAACGAGTCTTTGAATAATCG 59.263 38.462 0.00 0.00 36.32 3.34
971 1094 7.581476 TGGTGAAAACGAGTCTTTGAATAATC 58.419 34.615 0.00 0.00 0.00 1.75
989 1114 2.224769 GGGACAGACATCCTTGGTGAAA 60.225 50.000 0.00 0.00 38.95 2.69
990 1115 1.351017 GGGACAGACATCCTTGGTGAA 59.649 52.381 0.00 0.00 38.95 3.18
991 1116 0.984230 GGGACAGACATCCTTGGTGA 59.016 55.000 0.00 0.00 38.95 4.02
994 1119 1.450312 GCGGGACAGACATCCTTGG 60.450 63.158 0.00 0.00 38.95 3.61
996 1121 2.227089 GACGCGGGACAGACATCCTT 62.227 60.000 12.47 0.00 38.95 3.36
997 1122 2.680352 ACGCGGGACAGACATCCT 60.680 61.111 12.47 0.00 38.95 3.24
1024 1183 4.619227 AGGACGGTGCGTGGGTTG 62.619 66.667 0.00 0.00 41.37 3.77
1133 1298 2.188161 GGCGAGAGGGAGTAGGTCG 61.188 68.421 0.00 0.00 0.00 4.79
1137 1302 2.494530 GCCTGGCGAGAGGGAGTAG 61.495 68.421 1.35 0.00 33.17 2.57
1275 1440 0.183492 TGAGGCTGAACCATATGCCC 59.817 55.000 0.00 0.00 45.94 5.36
1286 1451 1.070786 GGAACACGGTTGAGGCTGA 59.929 57.895 0.00 0.00 0.00 4.26
1287 1452 1.966451 GGGAACACGGTTGAGGCTG 60.966 63.158 0.00 0.00 0.00 4.85
1288 1453 1.990160 TTGGGAACACGGTTGAGGCT 61.990 55.000 0.00 0.00 42.67 4.58
1289 1454 1.515521 CTTGGGAACACGGTTGAGGC 61.516 60.000 0.00 0.00 42.67 4.70
1290 1455 1.515521 GCTTGGGAACACGGTTGAGG 61.516 60.000 0.00 0.00 42.67 3.86
1291 1456 0.535102 AGCTTGGGAACACGGTTGAG 60.535 55.000 0.00 0.00 42.67 3.02
1362 1533 3.140225 GATCGTGAGCTCCGGGGAC 62.140 68.421 4.80 0.00 0.00 4.46
1436 1607 3.858868 TTGGCTGTGACGTCGGCTC 62.859 63.158 21.10 14.36 39.41 4.70
1458 1629 1.358759 GACCGCCCTGTTGTTGTTG 59.641 57.895 0.00 0.00 0.00 3.33
1459 1630 1.826487 GGACCGCCCTGTTGTTGTT 60.826 57.895 0.00 0.00 0.00 2.83
1460 1631 2.203294 GGACCGCCCTGTTGTTGT 60.203 61.111 0.00 0.00 0.00 3.32
1471 1642 2.726351 CCAGGAGAAGGAGGACCGC 61.726 68.421 0.00 0.00 41.83 5.68
1537 1708 1.078848 GGTCGAAGCTCTGCCACAT 60.079 57.895 0.00 0.00 0.00 3.21
1663 1834 1.449353 CCAGCTCCATGGAGTAGGC 59.551 63.158 36.32 25.69 43.57 3.93
1664 1835 2.049627 GCCCAGCTCCATGGAGTAGG 62.050 65.000 36.32 33.76 43.57 3.18
1714 1885 4.814294 CCAGTAGGGCACGGACGC 62.814 72.222 0.00 0.00 0.00 5.19
1725 1896 2.363795 TCCCCGCTGGACCAGTAG 60.364 66.667 22.58 16.11 38.61 2.57
1755 1926 4.504132 GGCACCGAGCTGAAGTAG 57.496 61.111 0.00 0.00 44.79 2.57
1860 2031 2.941064 CAGGAAGCTGTACATGGTGATG 59.059 50.000 0.00 0.00 35.49 3.07
1903 2074 1.226542 CATCCTGCCAGACCAGCAT 59.773 57.895 0.00 0.00 40.04 3.79
1928 2099 1.304713 TAGACCGTCACCCAGTCCC 60.305 63.158 0.40 0.00 0.00 4.46
1930 2101 1.505353 CGTAGACCGTCACCCAGTC 59.495 63.158 0.40 0.00 0.00 3.51
1948 2119 3.966543 CTGGGTGGTGGGGTGGAC 61.967 72.222 0.00 0.00 0.00 4.02
1949 2120 4.525028 ACTGGGTGGTGGGGTGGA 62.525 66.667 0.00 0.00 0.00 4.02
1982 2153 4.776322 CCGTGAATGGCCCGCAGA 62.776 66.667 0.00 0.00 0.00 4.26
2043 2214 2.741211 GGCGAACCCACGGAGAAC 60.741 66.667 0.00 0.00 0.00 3.01
2097 2268 1.141657 AGCTGAGTGTTCCTTCTGCAA 59.858 47.619 6.22 0.00 0.00 4.08
2103 2274 3.567164 CACAATTCAGCTGAGTGTTCCTT 59.433 43.478 24.81 7.69 0.00 3.36
2190 2361 1.417517 CCGTGGGGGTTATAGGGTAAC 59.582 57.143 0.00 0.00 0.00 2.50
2193 2364 2.074332 GCCGTGGGGGTTATAGGGT 61.074 63.158 0.00 0.00 38.44 4.34
2292 2463 2.079158 CACATAGAACAGCCACCACTG 58.921 52.381 0.00 0.00 43.59 3.66
2331 2502 3.529634 TCAATCTGGCGTTGTTTTACG 57.470 42.857 0.00 0.00 44.09 3.18
2342 2516 1.760192 AGAAGCACCATCAATCTGGC 58.240 50.000 0.00 0.00 40.15 4.85
2360 2534 3.197790 CGCCATCACCGCTGGAAG 61.198 66.667 1.50 0.00 35.70 3.46
2361 2535 2.739849 TTTCGCCATCACCGCTGGAA 62.740 55.000 1.50 0.00 35.70 3.53
2362 2536 2.535485 ATTTCGCCATCACCGCTGGA 62.535 55.000 1.50 0.00 35.70 3.86
2403 2577 4.592426 CGGGTCCGGAACTCTTTC 57.408 61.111 21.19 0.21 35.56 2.62
2480 2654 3.001634 CGCTACGACGAGTACCAAGATAA 59.998 47.826 0.00 0.00 34.06 1.75
2562 2736 2.886523 TCTGAATGAAACAAGCCCACTG 59.113 45.455 0.00 0.00 0.00 3.66
2619 2793 0.622665 CACCTGCCCCAATCTTCTCT 59.377 55.000 0.00 0.00 0.00 3.10
2664 2838 5.061064 CGCTATAGTGGTCGAATCATTTAGC 59.939 44.000 5.33 3.33 0.00 3.09
2688 2862 2.359848 ACAACCGTAAAGCCTTTTCACC 59.640 45.455 0.00 0.00 0.00 4.02
2727 2901 0.398318 AACTCACCTCAGCCCTGAAC 59.602 55.000 0.00 0.00 39.39 3.18
2793 2967 0.249868 TCTTGTCGCCCTCACAACAG 60.250 55.000 0.00 0.00 30.49 3.16
2841 3015 1.064166 AGATGGGCATCAAGGGAACTG 60.064 52.381 0.00 0.00 38.84 3.16
2881 3055 3.340814 TCTGGTTCTCCAATTCAGAGC 57.659 47.619 0.00 0.00 43.81 4.09
2907 3081 2.559440 CTGGCAACTCCAAGAGCTATC 58.441 52.381 0.00 0.00 46.01 2.08
2976 3150 5.985781 AGTATGTTTTGCGGCTTTATATCG 58.014 37.500 0.00 0.00 0.00 2.92
3036 3210 0.677731 TGAGAAGCTTTGCCATCCCG 60.678 55.000 0.00 0.00 0.00 5.14
3135 3309 0.374758 CATCGACTTTGGGCGTGATG 59.625 55.000 0.00 0.00 0.00 3.07
3192 3366 2.165301 GTTCGCGTTCATCCTCCCG 61.165 63.158 5.77 0.00 0.00 5.14
3212 3386 2.338015 CCACTGCTGCCGCATTCTT 61.338 57.895 2.34 0.00 46.74 2.52
3259 3433 3.503363 GAGAAGCTTGCGCGCCAT 61.503 61.111 30.77 9.95 42.32 4.40
3264 3438 3.191539 CCCTCGAGAAGCTTGCGC 61.192 66.667 15.71 0.00 0.00 6.09
3285 3459 0.926155 CATCCACGAAGCTCATGACG 59.074 55.000 0.00 0.00 0.00 4.35
3532 4277 2.126346 GGTGAATGCAAGCCACGC 60.126 61.111 0.00 0.00 0.00 5.34
3582 4328 1.941812 CACGACGCTTGGCTTCTTT 59.058 52.632 0.00 0.00 0.00 2.52
3655 4401 3.490759 GCTGCGACGGACACCATG 61.491 66.667 0.00 0.00 0.00 3.66
3664 4410 2.724708 GACAAGCTCTGCTGCGACG 61.725 63.158 0.00 0.00 39.62 5.12
3669 4415 0.234106 CGTTGTGACAAGCTCTGCTG 59.766 55.000 0.00 0.00 39.62 4.41
3686 4432 3.096852 TGATCTTCCACCTACACATCGT 58.903 45.455 0.00 0.00 0.00 3.73
3706 4452 2.360801 ACCCATCTTTGTTTTCACCGTG 59.639 45.455 0.00 0.00 0.00 4.94
3707 4453 2.661718 ACCCATCTTTGTTTTCACCGT 58.338 42.857 0.00 0.00 0.00 4.83
3725 4471 8.494016 ACTTGAATAGCTACACATCTTTTACC 57.506 34.615 0.00 0.00 0.00 2.85
3729 4475 8.936864 GTTGTACTTGAATAGCTACACATCTTT 58.063 33.333 0.00 0.00 0.00 2.52
3733 4479 6.707290 TGGTTGTACTTGAATAGCTACACAT 58.293 36.000 0.00 0.00 0.00 3.21
3734 4480 6.104146 TGGTTGTACTTGAATAGCTACACA 57.896 37.500 0.00 0.00 0.00 3.72
3736 4482 6.941857 TGATGGTTGTACTTGAATAGCTACA 58.058 36.000 0.00 0.00 0.00 2.74
3782 4605 5.297547 GTCTTAGATCGCCATTGGAACATA 58.702 41.667 6.95 0.00 39.30 2.29
3791 4614 1.273606 CATCCGGTCTTAGATCGCCAT 59.726 52.381 9.67 0.61 34.53 4.40
3802 4625 3.105283 AGTTAAGCCTAACATCCGGTCT 58.895 45.455 7.91 0.00 40.03 3.85
3805 4628 4.809426 CACTAAGTTAAGCCTAACATCCGG 59.191 45.833 7.91 0.00 40.03 5.14
3809 4632 6.763610 GCTCATCACTAAGTTAAGCCTAACAT 59.236 38.462 7.91 0.00 40.03 2.71
3865 4688 1.638133 TCTAGGAAGACGAGACGACG 58.362 55.000 0.00 0.00 39.31 5.12
3866 4689 5.927954 ATATTCTAGGAAGACGAGACGAC 57.072 43.478 0.00 0.00 0.00 4.34
3867 4690 6.757237 ACTATATTCTAGGAAGACGAGACGA 58.243 40.000 0.00 0.00 0.00 4.20
3868 4691 7.814107 AGTACTATATTCTAGGAAGACGAGACG 59.186 40.741 0.00 0.00 0.00 4.18
3936 4759 9.349713 ACTGTCAACTTATTTTAGGTTCATTCA 57.650 29.630 0.00 0.00 0.00 2.57
3937 4760 9.612620 CACTGTCAACTTATTTTAGGTTCATTC 57.387 33.333 0.00 0.00 0.00 2.67
3938 4761 8.576442 CCACTGTCAACTTATTTTAGGTTCATT 58.424 33.333 0.00 0.00 0.00 2.57
3939 4762 7.176690 CCCACTGTCAACTTATTTTAGGTTCAT 59.823 37.037 0.00 0.00 0.00 2.57
3966 4789 2.770587 CTTGAGTTCTTGCGCCGTGC 62.771 60.000 4.18 0.00 46.70 5.34
3967 4790 1.205064 CTTGAGTTCTTGCGCCGTG 59.795 57.895 4.18 0.00 0.00 4.94
3968 4791 1.227556 ACTTGAGTTCTTGCGCCGT 60.228 52.632 4.18 0.00 0.00 5.68
3969 4792 1.205064 CACTTGAGTTCTTGCGCCG 59.795 57.895 4.18 0.00 0.00 6.46
3970 4793 1.129437 GATCACTTGAGTTCTTGCGCC 59.871 52.381 4.18 0.00 0.00 6.53
3971 4794 2.072298 AGATCACTTGAGTTCTTGCGC 58.928 47.619 0.00 0.00 0.00 6.09
3972 4795 2.159734 GCAGATCACTTGAGTTCTTGCG 60.160 50.000 0.00 0.00 0.00 4.85
3973 4796 3.072944 AGCAGATCACTTGAGTTCTTGC 58.927 45.455 0.00 0.00 0.00 4.01
3974 4797 3.436015 CCAGCAGATCACTTGAGTTCTTG 59.564 47.826 0.00 0.00 0.00 3.02
3975 4798 3.672808 CCAGCAGATCACTTGAGTTCTT 58.327 45.455 0.00 0.00 0.00 2.52
3976 4799 2.614987 GCCAGCAGATCACTTGAGTTCT 60.615 50.000 0.00 0.00 0.00 3.01
3977 4800 1.736681 GCCAGCAGATCACTTGAGTTC 59.263 52.381 0.00 0.00 0.00 3.01
3978 4801 1.818642 GCCAGCAGATCACTTGAGTT 58.181 50.000 0.00 0.00 0.00 3.01
3979 4802 0.390866 CGCCAGCAGATCACTTGAGT 60.391 55.000 0.00 0.00 0.00 3.41
3980 4803 1.703438 GCGCCAGCAGATCACTTGAG 61.703 60.000 0.00 0.00 44.35 3.02
3981 4804 1.742880 GCGCCAGCAGATCACTTGA 60.743 57.895 0.00 0.00 44.35 3.02
3982 4805 2.789917 GCGCCAGCAGATCACTTG 59.210 61.111 0.00 0.00 44.35 3.16
3992 4815 2.105930 TTTTGGTGTTGCGCCAGC 59.894 55.556 4.18 6.95 45.18 4.85
3993 4816 0.871163 CTGTTTTGGTGTTGCGCCAG 60.871 55.000 4.18 0.00 45.18 4.85
3994 4817 1.140589 CTGTTTTGGTGTTGCGCCA 59.859 52.632 4.18 0.00 42.73 5.69
3995 4818 2.237066 GCTGTTTTGGTGTTGCGCC 61.237 57.895 4.18 0.00 34.12 6.53
3996 4819 1.481819 CTGCTGTTTTGGTGTTGCGC 61.482 55.000 0.00 0.00 0.00 6.09
3997 4820 0.100325 TCTGCTGTTTTGGTGTTGCG 59.900 50.000 0.00 0.00 0.00 4.85
3998 4821 1.405105 TCTCTGCTGTTTTGGTGTTGC 59.595 47.619 0.00 0.00 0.00 4.17
4008 4831 0.107456 CTGGTGGTGTCTCTGCTGTT 59.893 55.000 0.00 0.00 0.00 3.16
4021 4844 9.046296 GTAATAAACTCTACATCAATCTGGTGG 57.954 37.037 0.00 0.00 31.38 4.61
4022 4845 8.755941 CGTAATAAACTCTACATCAATCTGGTG 58.244 37.037 0.00 0.00 33.91 4.17
4024 4847 8.873215 ACGTAATAAACTCTACATCAATCTGG 57.127 34.615 0.00 0.00 0.00 3.86
4029 4852 9.793252 GGAAGTACGTAATAAACTCTACATCAA 57.207 33.333 0.00 0.00 0.00 2.57
4030 4853 8.408601 GGGAAGTACGTAATAAACTCTACATCA 58.591 37.037 0.00 0.00 0.00 3.07
4031 4854 8.628280 AGGGAAGTACGTAATAAACTCTACATC 58.372 37.037 0.00 0.00 0.00 3.06
4033 4856 7.611467 TCAGGGAAGTACGTAATAAACTCTACA 59.389 37.037 0.00 0.00 0.00 2.74
4034 4857 7.989826 TCAGGGAAGTACGTAATAAACTCTAC 58.010 38.462 0.00 0.00 0.00 2.59
4035 4858 8.579850 TTCAGGGAAGTACGTAATAAACTCTA 57.420 34.615 0.00 0.00 0.00 2.43
4036 4859 7.472334 TTCAGGGAAGTACGTAATAAACTCT 57.528 36.000 0.00 0.00 0.00 3.24
4037 4860 8.713737 AATTCAGGGAAGTACGTAATAAACTC 57.286 34.615 0.00 0.00 0.00 3.01
4042 4865 9.941325 TTGTTAAATTCAGGGAAGTACGTAATA 57.059 29.630 0.00 0.00 0.00 0.98
4044 4867 8.558700 GTTTGTTAAATTCAGGGAAGTACGTAA 58.441 33.333 0.00 0.00 0.00 3.18
4046 4869 6.769341 AGTTTGTTAAATTCAGGGAAGTACGT 59.231 34.615 0.00 0.00 0.00 3.57
4047 4870 7.041644 TCAGTTTGTTAAATTCAGGGAAGTACG 60.042 37.037 0.00 0.00 0.00 3.67
4048 4871 8.161699 TCAGTTTGTTAAATTCAGGGAAGTAC 57.838 34.615 0.00 0.00 0.00 2.73
4049 4872 8.754991 TTCAGTTTGTTAAATTCAGGGAAGTA 57.245 30.769 0.00 0.00 0.00 2.24
4050 4873 7.654022 TTCAGTTTGTTAAATTCAGGGAAGT 57.346 32.000 0.00 0.00 0.00 3.01
4051 4874 8.940768 TTTTCAGTTTGTTAAATTCAGGGAAG 57.059 30.769 0.00 0.00 0.00 3.46
4052 4875 9.323985 CATTTTCAGTTTGTTAAATTCAGGGAA 57.676 29.630 0.00 0.00 0.00 3.97
4054 4877 7.173047 CCCATTTTCAGTTTGTTAAATTCAGGG 59.827 37.037 0.00 0.00 0.00 4.45
4082 4952 3.644738 TCCCTCCGTTAGTCTCAAAACTT 59.355 43.478 0.00 0.00 0.00 2.66
4098 4968 2.708325 AGACAATCAATAGCCTCCCTCC 59.292 50.000 0.00 0.00 0.00 4.30
4099 4969 4.429854 AAGACAATCAATAGCCTCCCTC 57.570 45.455 0.00 0.00 0.00 4.30
4293 7370 9.382275 ACAGATTTTAAAACTCTGCAACATTTT 57.618 25.926 24.71 11.40 40.01 1.82
4294 7371 8.947055 ACAGATTTTAAAACTCTGCAACATTT 57.053 26.923 24.71 11.84 40.01 2.32
4295 7372 8.947055 AACAGATTTTAAAACTCTGCAACATT 57.053 26.923 24.71 15.80 40.01 2.71
4296 7373 8.947055 AAACAGATTTTAAAACTCTGCAACAT 57.053 26.923 24.71 12.71 40.01 2.71
4297 7374 9.515020 CTAAACAGATTTTAAAACTCTGCAACA 57.485 29.630 24.71 14.73 40.01 3.33
4298 7375 9.516314 ACTAAACAGATTTTAAAACTCTGCAAC 57.484 29.630 24.71 6.35 40.01 4.17
4299 7376 9.515020 CACTAAACAGATTTTAAAACTCTGCAA 57.485 29.630 24.71 16.14 40.01 4.08
4301 7378 9.730420 TTCACTAAACAGATTTTAAAACTCTGC 57.270 29.630 24.71 8.41 40.01 4.26
4317 7394 9.986833 CATGATCATTTCGTAATTCACTAAACA 57.013 29.630 5.16 0.00 0.00 2.83
4397 7474 9.804758 TCGTTTTTACAGTTGGTGAATATTTTT 57.195 25.926 0.00 0.00 0.00 1.94
4398 7475 9.974980 ATCGTTTTTACAGTTGGTGAATATTTT 57.025 25.926 0.00 0.00 0.00 1.82
4399 7476 9.405587 CATCGTTTTTACAGTTGGTGAATATTT 57.594 29.630 0.00 0.00 0.00 1.40
4400 7477 8.788806 TCATCGTTTTTACAGTTGGTGAATATT 58.211 29.630 0.00 0.00 0.00 1.28
4401 7478 8.330466 TCATCGTTTTTACAGTTGGTGAATAT 57.670 30.769 0.00 0.00 0.00 1.28
4402 7479 7.658167 TCTCATCGTTTTTACAGTTGGTGAATA 59.342 33.333 0.00 0.00 0.00 1.75
4403 7480 6.485313 TCTCATCGTTTTTACAGTTGGTGAAT 59.515 34.615 0.00 0.00 0.00 2.57
4404 7481 5.818336 TCTCATCGTTTTTACAGTTGGTGAA 59.182 36.000 0.00 0.00 0.00 3.18
4405 7482 5.361427 TCTCATCGTTTTTACAGTTGGTGA 58.639 37.500 0.00 0.00 0.00 4.02
4407 7484 6.877611 AATCTCATCGTTTTTACAGTTGGT 57.122 33.333 0.00 0.00 0.00 3.67
4408 7485 9.840427 ATTAAATCTCATCGTTTTTACAGTTGG 57.160 29.630 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.