Multiple sequence alignment - TraesCS2A01G299300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G299300 chr2A 100.000 3444 0 0 1 3444 514866471 514863028 0.000000e+00 6360.0
1 TraesCS2A01G299300 chr2A 98.551 690 10 0 1 690 23441603 23442292 0.000000e+00 1219.0
2 TraesCS2A01G299300 chr2A 87.912 91 6 5 704 791 694958719 694958631 6.080000e-18 102.0
3 TraesCS2A01G299300 chr7A 95.926 1031 35 2 2243 3272 105406873 105405849 0.000000e+00 1664.0
4 TraesCS2A01G299300 chr7A 97.753 178 3 1 3268 3444 105403695 105403518 4.320000e-79 305.0
5 TraesCS2A01G299300 chr2B 93.534 1129 52 10 1060 2174 451129552 451128431 0.000000e+00 1661.0
6 TraesCS2A01G299300 chr2B 98.990 693 6 1 1 692 695407194 695407886 0.000000e+00 1240.0
7 TraesCS2A01G299300 chr2B 86.626 329 30 9 2246 2561 508962042 508961715 5.470000e-93 351.0
8 TraesCS2A01G299300 chr2B 84.298 121 16 2 3160 3277 508961278 508961158 7.810000e-22 115.0
9 TraesCS2A01G299300 chr2B 95.714 70 3 0 2173 2242 451128357 451128288 2.810000e-21 113.0
10 TraesCS2A01G299300 chr2B 89.535 86 7 2 703 787 146994992 146994908 1.310000e-19 108.0
11 TraesCS2A01G299300 chr2B 86.885 61 8 0 3050 3110 508961417 508961357 6.170000e-08 69.4
12 TraesCS2A01G299300 chr2B 100.000 31 0 0 2927 2957 508961464 508961434 1.340000e-04 58.4
13 TraesCS2A01G299300 chr2D 93.097 1130 56 11 1060 2174 379865478 379864356 0.000000e+00 1635.0
14 TraesCS2A01G299300 chr2D 81.267 1073 106 38 2455 3444 37873361 37874421 0.000000e+00 780.0
15 TraesCS2A01G299300 chr2D 91.005 189 14 3 2246 2431 37871365 37871553 5.710000e-63 252.0
16 TraesCS2A01G299300 chr2D 90.698 86 5 2 704 787 526080448 526080532 1.010000e-20 111.0
17 TraesCS2A01G299300 chr2D 100.000 43 0 0 2195 2237 379861540 379861498 2.850000e-11 80.5
18 TraesCS2A01G299300 chr3A 98.988 692 5 2 1 691 111574892 111575582 0.000000e+00 1238.0
19 TraesCS2A01G299300 chr3A 98.553 691 10 0 1 691 634572302 634572992 0.000000e+00 1221.0
20 TraesCS2A01G299300 chr3A 83.796 216 27 6 3107 3316 686707579 686707366 7.540000e-47 198.0
21 TraesCS2A01G299300 chr5B 98.986 690 7 0 1 690 377202769 377203458 0.000000e+00 1236.0
22 TraesCS2A01G299300 chr5B 77.153 871 100 45 2492 3271 586628192 586627330 6.880000e-112 414.0
23 TraesCS2A01G299300 chr5B 88.760 258 25 2 2243 2496 586628662 586628405 2.580000e-81 313.0
24 TraesCS2A01G299300 chr5B 87.912 91 8 2 700 788 371270581 371270670 1.690000e-18 104.0
25 TraesCS2A01G299300 chr5B 85.507 69 8 2 1308 1375 537956011 537955944 1.710000e-08 71.3
26 TraesCS2A01G299300 chr4A 98.842 691 7 1 1 690 507453430 507452740 0.000000e+00 1230.0
27 TraesCS2A01G299300 chr4A 98.841 690 7 1 1 690 32664467 32665155 0.000000e+00 1229.0
28 TraesCS2A01G299300 chr3B 98.698 691 9 0 1 691 708460181 708459491 0.000000e+00 1227.0
29 TraesCS2A01G299300 chr3B 80.584 1061 111 43 2464 3444 755300413 755301458 0.000000e+00 730.0
30 TraesCS2A01G299300 chr3B 91.364 220 18 1 2243 2461 755288272 755288491 2.010000e-77 300.0
31 TraesCS2A01G299300 chr3B 88.764 89 7 2 704 790 697073836 697073749 4.700000e-19 106.0
32 TraesCS2A01G299300 chr1A 98.553 691 9 1 1 690 549137490 549138180 0.000000e+00 1219.0
33 TraesCS2A01G299300 chr1A 87.778 90 8 2 700 787 551487767 551487855 6.080000e-18 102.0
34 TraesCS2A01G299300 chr4B 87.403 516 50 9 2241 2750 604533823 604534329 2.300000e-161 579.0
35 TraesCS2A01G299300 chr4B 82.240 625 60 20 2869 3444 604534721 604535343 3.090000e-135 492.0
36 TraesCS2A01G299300 chr4B 87.500 64 8 0 1312 1375 667596521 667596584 1.330000e-09 75.0
37 TraesCS2A01G299300 chr6B 84.774 243 23 9 2243 2482 693079856 693079625 7.430000e-57 231.0
38 TraesCS2A01G299300 chr6B 89.011 91 7 2 699 787 162181173 162181262 3.630000e-20 110.0
39 TraesCS2A01G299300 chr3D 82.869 251 37 5 2241 2488 24478672 24478425 1.610000e-53 220.0
40 TraesCS2A01G299300 chr5A 81.783 258 38 6 2235 2487 637992260 637992513 1.250000e-49 207.0
41 TraesCS2A01G299300 chr5A 81.373 102 16 3 1302 1401 558305234 558305134 2.850000e-11 80.5
42 TraesCS2A01G299300 chr6A 81.928 249 38 5 2243 2488 609891946 609891702 1.620000e-48 204.0
43 TraesCS2A01G299300 chr1B 76.471 357 63 16 2563 2915 563749119 563749458 1.270000e-39 174.0
44 TraesCS2A01G299300 chrUn 89.773 88 6 2 704 789 24003573 24003487 3.630000e-20 110.0
45 TraesCS2A01G299300 chrUn 82.353 85 13 2 1319 1402 88642919 88643002 4.770000e-09 73.1
46 TraesCS2A01G299300 chrUn 82.353 85 13 2 1319 1402 283733010 283733093 4.770000e-09 73.1
47 TraesCS2A01G299300 chr6D 86.170 94 9 3 706 796 166796212 166796304 7.870000e-17 99.0
48 TraesCS2A01G299300 chr7D 82.432 74 10 3 1330 1401 630677952 630678024 1.030000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G299300 chr2A 514863028 514866471 3443 True 6360.00 6360 100.0000 1 3444 1 chr2A.!!$R1 3443
1 TraesCS2A01G299300 chr2A 23441603 23442292 689 False 1219.00 1219 98.5510 1 690 1 chr2A.!!$F1 689
2 TraesCS2A01G299300 chr7A 105403518 105406873 3355 True 984.50 1664 96.8395 2243 3444 2 chr7A.!!$R1 1201
3 TraesCS2A01G299300 chr2B 695407194 695407886 692 False 1240.00 1240 98.9900 1 692 1 chr2B.!!$F1 691
4 TraesCS2A01G299300 chr2B 451128288 451129552 1264 True 887.00 1661 94.6240 1060 2242 2 chr2B.!!$R2 1182
5 TraesCS2A01G299300 chr2D 379861498 379865478 3980 True 857.75 1635 96.5485 1060 2237 2 chr2D.!!$R1 1177
6 TraesCS2A01G299300 chr2D 37871365 37874421 3056 False 516.00 780 86.1360 2246 3444 2 chr2D.!!$F2 1198
7 TraesCS2A01G299300 chr3A 111574892 111575582 690 False 1238.00 1238 98.9880 1 691 1 chr3A.!!$F1 690
8 TraesCS2A01G299300 chr3A 634572302 634572992 690 False 1221.00 1221 98.5530 1 691 1 chr3A.!!$F2 690
9 TraesCS2A01G299300 chr5B 377202769 377203458 689 False 1236.00 1236 98.9860 1 690 1 chr5B.!!$F2 689
10 TraesCS2A01G299300 chr5B 586627330 586628662 1332 True 363.50 414 82.9565 2243 3271 2 chr5B.!!$R2 1028
11 TraesCS2A01G299300 chr4A 507452740 507453430 690 True 1230.00 1230 98.8420 1 690 1 chr4A.!!$R1 689
12 TraesCS2A01G299300 chr4A 32664467 32665155 688 False 1229.00 1229 98.8410 1 690 1 chr4A.!!$F1 689
13 TraesCS2A01G299300 chr3B 708459491 708460181 690 True 1227.00 1227 98.6980 1 691 1 chr3B.!!$R2 690
14 TraesCS2A01G299300 chr3B 755300413 755301458 1045 False 730.00 730 80.5840 2464 3444 1 chr3B.!!$F2 980
15 TraesCS2A01G299300 chr1A 549137490 549138180 690 False 1219.00 1219 98.5530 1 690 1 chr1A.!!$F1 689
16 TraesCS2A01G299300 chr4B 604533823 604535343 1520 False 535.50 579 84.8215 2241 3444 2 chr4B.!!$F2 1203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 985 0.035439 CACCCATGACCCACAGTACC 60.035 60.0 0.0 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2629 7477 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
305 307 0.740868 CAACACGACGCCATCCATCT 60.741 55.000 0.00 0.00 0.00 2.90
692 695 1.747774 GGAGGAGAGAGCCATCTGC 59.252 63.158 0.00 0.00 37.88 4.26
693 696 1.747774 GAGGAGAGAGCCATCTGCC 59.252 63.158 3.98 1.35 42.71 4.85
694 697 1.757423 GAGGAGAGAGCCATCTGCCC 61.757 65.000 3.98 0.00 42.71 5.36
695 698 1.765657 GGAGAGAGCCATCTGCCCT 60.766 63.158 0.00 0.00 42.71 5.19
696 699 1.344191 GGAGAGAGCCATCTGCCCTT 61.344 60.000 0.00 0.00 42.71 3.95
697 700 0.545646 GAGAGAGCCATCTGCCCTTT 59.454 55.000 0.00 0.00 42.71 3.11
698 701 0.545646 AGAGAGCCATCTGCCCTTTC 59.454 55.000 0.00 0.00 42.71 2.62
699 702 0.465278 GAGAGCCATCTGCCCTTTCC 60.465 60.000 0.00 0.00 42.71 3.13
700 703 1.210204 AGAGCCATCTGCCCTTTCCA 61.210 55.000 0.00 0.00 42.71 3.53
701 704 0.323725 GAGCCATCTGCCCTTTCCAA 60.324 55.000 0.00 0.00 42.71 3.53
702 705 0.613012 AGCCATCTGCCCTTTCCAAC 60.613 55.000 0.00 0.00 42.71 3.77
703 706 0.613012 GCCATCTGCCCTTTCCAACT 60.613 55.000 0.00 0.00 0.00 3.16
704 707 1.340991 GCCATCTGCCCTTTCCAACTA 60.341 52.381 0.00 0.00 0.00 2.24
705 708 2.369394 CCATCTGCCCTTTCCAACTAC 58.631 52.381 0.00 0.00 0.00 2.73
706 709 2.025887 CCATCTGCCCTTTCCAACTACT 60.026 50.000 0.00 0.00 0.00 2.57
707 710 3.274288 CATCTGCCCTTTCCAACTACTC 58.726 50.000 0.00 0.00 0.00 2.59
708 711 1.628846 TCTGCCCTTTCCAACTACTCC 59.371 52.381 0.00 0.00 0.00 3.85
709 712 0.696501 TGCCCTTTCCAACTACTCCC 59.303 55.000 0.00 0.00 0.00 4.30
710 713 0.992695 GCCCTTTCCAACTACTCCCT 59.007 55.000 0.00 0.00 0.00 4.20
711 714 1.065345 GCCCTTTCCAACTACTCCCTC 60.065 57.143 0.00 0.00 0.00 4.30
712 715 2.552367 CCCTTTCCAACTACTCCCTCT 58.448 52.381 0.00 0.00 0.00 3.69
713 716 2.237392 CCCTTTCCAACTACTCCCTCTG 59.763 54.545 0.00 0.00 0.00 3.35
714 717 2.355209 CCTTTCCAACTACTCCCTCTGC 60.355 54.545 0.00 0.00 0.00 4.26
715 718 2.024176 TTCCAACTACTCCCTCTGCA 57.976 50.000 0.00 0.00 0.00 4.41
716 719 1.267121 TCCAACTACTCCCTCTGCAC 58.733 55.000 0.00 0.00 0.00 4.57
717 720 1.203187 TCCAACTACTCCCTCTGCACT 60.203 52.381 0.00 0.00 0.00 4.40
718 721 2.042569 TCCAACTACTCCCTCTGCACTA 59.957 50.000 0.00 0.00 0.00 2.74
719 722 2.832129 CCAACTACTCCCTCTGCACTAA 59.168 50.000 0.00 0.00 0.00 2.24
720 723 3.452627 CCAACTACTCCCTCTGCACTAAT 59.547 47.826 0.00 0.00 0.00 1.73
721 724 4.649674 CCAACTACTCCCTCTGCACTAATA 59.350 45.833 0.00 0.00 0.00 0.98
722 725 5.305644 CCAACTACTCCCTCTGCACTAATAT 59.694 44.000 0.00 0.00 0.00 1.28
723 726 6.493802 CCAACTACTCCCTCTGCACTAATATA 59.506 42.308 0.00 0.00 0.00 0.86
724 727 7.015292 CCAACTACTCCCTCTGCACTAATATAA 59.985 40.741 0.00 0.00 0.00 0.98
725 728 7.768807 ACTACTCCCTCTGCACTAATATAAG 57.231 40.000 0.00 0.00 0.00 1.73
726 729 7.527796 ACTACTCCCTCTGCACTAATATAAGA 58.472 38.462 0.00 0.00 0.00 2.10
727 730 6.909550 ACTCCCTCTGCACTAATATAAGAG 57.090 41.667 0.00 0.00 35.25 2.85
728 731 6.377912 ACTCCCTCTGCACTAATATAAGAGT 58.622 40.000 0.00 0.00 33.94 3.24
729 732 6.266558 ACTCCCTCTGCACTAATATAAGAGTG 59.733 42.308 11.33 11.33 44.88 3.51
730 733 6.136857 TCCCTCTGCACTAATATAAGAGTGT 58.863 40.000 15.21 0.00 44.10 3.55
731 734 6.611642 TCCCTCTGCACTAATATAAGAGTGTT 59.388 38.462 15.21 0.00 44.10 3.32
732 735 7.125811 TCCCTCTGCACTAATATAAGAGTGTTT 59.874 37.037 15.21 0.00 44.10 2.83
733 736 8.421784 CCCTCTGCACTAATATAAGAGTGTTTA 58.578 37.037 15.21 5.64 44.10 2.01
734 737 9.469807 CCTCTGCACTAATATAAGAGTGTTTAG 57.530 37.037 15.21 12.06 44.10 1.85
782 785 8.953368 ACACTTTTATATTAGTTTACCGAGGG 57.047 34.615 0.00 0.00 0.00 4.30
783 786 8.761689 ACACTTTTATATTAGTTTACCGAGGGA 58.238 33.333 0.00 0.00 0.00 4.20
784 787 9.257651 CACTTTTATATTAGTTTACCGAGGGAG 57.742 37.037 0.00 0.00 0.00 4.30
785 788 8.985922 ACTTTTATATTAGTTTACCGAGGGAGT 58.014 33.333 0.00 0.00 0.00 3.85
788 791 9.646522 TTTATATTAGTTTACCGAGGGAGTACT 57.353 33.333 0.00 0.00 0.00 2.73
791 794 9.819754 ATATTAGTTTACCGAGGGAGTACTAAT 57.180 33.333 19.11 19.11 37.06 1.73
792 795 7.961326 TTAGTTTACCGAGGGAGTACTAATT 57.039 36.000 0.00 0.00 0.00 1.40
793 796 9.646522 ATTAGTTTACCGAGGGAGTACTAATTA 57.353 33.333 13.65 0.00 33.70 1.40
794 797 7.961326 AGTTTACCGAGGGAGTACTAATTAA 57.039 36.000 0.00 0.00 0.00 1.40
795 798 8.544687 AGTTTACCGAGGGAGTACTAATTAAT 57.455 34.615 0.00 0.00 0.00 1.40
796 799 8.985922 AGTTTACCGAGGGAGTACTAATTAATT 58.014 33.333 5.89 5.89 0.00 1.40
797 800 9.605275 GTTTACCGAGGGAGTACTAATTAATTT 57.395 33.333 5.91 0.00 0.00 1.82
827 830 9.391227 AGAGATGAGATAATCCAGTTAAATCCT 57.609 33.333 0.00 0.00 0.00 3.24
829 832 9.790344 AGATGAGATAATCCAGTTAAATCCTTG 57.210 33.333 0.00 0.00 0.00 3.61
830 833 8.930846 ATGAGATAATCCAGTTAAATCCTTGG 57.069 34.615 0.00 0.00 0.00 3.61
831 834 8.101309 TGAGATAATCCAGTTAAATCCTTGGA 57.899 34.615 0.00 0.00 43.36 3.53
832 835 7.993183 TGAGATAATCCAGTTAAATCCTTGGAC 59.007 37.037 0.00 0.00 42.12 4.02
833 836 8.107196 AGATAATCCAGTTAAATCCTTGGACT 57.893 34.615 0.00 0.00 42.12 3.85
834 837 8.560903 AGATAATCCAGTTAAATCCTTGGACTT 58.439 33.333 0.00 0.00 42.12 3.01
835 838 6.840780 AATCCAGTTAAATCCTTGGACTTG 57.159 37.500 0.00 0.00 42.12 3.16
836 839 5.319043 TCCAGTTAAATCCTTGGACTTGT 57.681 39.130 0.00 0.00 34.90 3.16
837 840 5.070001 TCCAGTTAAATCCTTGGACTTGTG 58.930 41.667 0.00 0.00 34.90 3.33
838 841 4.827284 CCAGTTAAATCCTTGGACTTGTGT 59.173 41.667 0.00 0.00 32.34 3.72
839 842 5.278463 CCAGTTAAATCCTTGGACTTGTGTG 60.278 44.000 0.00 0.00 32.34 3.82
840 843 4.827284 AGTTAAATCCTTGGACTTGTGTGG 59.173 41.667 0.00 0.00 0.00 4.17
841 844 1.620822 AATCCTTGGACTTGTGTGGC 58.379 50.000 0.00 0.00 0.00 5.01
842 845 0.773644 ATCCTTGGACTTGTGTGGCT 59.226 50.000 0.00 0.00 0.00 4.75
843 846 0.550914 TCCTTGGACTTGTGTGGCTT 59.449 50.000 0.00 0.00 0.00 4.35
844 847 1.771854 TCCTTGGACTTGTGTGGCTTA 59.228 47.619 0.00 0.00 0.00 3.09
845 848 1.880027 CCTTGGACTTGTGTGGCTTAC 59.120 52.381 0.00 0.00 0.00 2.34
846 849 2.571212 CTTGGACTTGTGTGGCTTACA 58.429 47.619 0.00 0.00 36.82 2.41
847 850 2.719531 TGGACTTGTGTGGCTTACAA 57.280 45.000 6.88 6.88 41.89 2.41
848 851 2.294074 TGGACTTGTGTGGCTTACAAC 58.706 47.619 3.58 0.00 41.89 3.32
849 852 2.294074 GGACTTGTGTGGCTTACAACA 58.706 47.619 3.58 0.00 41.89 3.33
850 853 2.290641 GGACTTGTGTGGCTTACAACAG 59.709 50.000 3.58 0.00 41.89 3.16
851 854 1.676006 ACTTGTGTGGCTTACAACAGC 59.324 47.619 3.58 0.00 41.89 4.40
852 855 1.949525 CTTGTGTGGCTTACAACAGCT 59.050 47.619 3.58 0.00 41.89 4.24
853 856 2.051334 TGTGTGGCTTACAACAGCTT 57.949 45.000 0.00 0.00 41.89 3.74
854 857 1.675483 TGTGTGGCTTACAACAGCTTG 59.325 47.619 0.00 0.00 41.89 4.01
855 858 1.946768 GTGTGGCTTACAACAGCTTGA 59.053 47.619 0.00 0.00 41.89 3.02
856 859 2.357637 GTGTGGCTTACAACAGCTTGAA 59.642 45.455 0.00 0.00 41.89 2.69
857 860 2.618241 TGTGGCTTACAACAGCTTGAAG 59.382 45.455 0.00 0.00 39.97 3.02
858 861 2.618709 GTGGCTTACAACAGCTTGAAGT 59.381 45.455 0.00 0.00 39.97 3.01
859 862 2.618241 TGGCTTACAACAGCTTGAAGTG 59.382 45.455 0.00 0.00 39.97 3.16
860 863 2.878406 GGCTTACAACAGCTTGAAGTGA 59.122 45.455 0.00 0.00 39.97 3.41
861 864 3.058639 GGCTTACAACAGCTTGAAGTGAG 60.059 47.826 0.00 0.00 39.97 3.51
862 865 3.809832 GCTTACAACAGCTTGAAGTGAGA 59.190 43.478 0.00 0.00 36.79 3.27
863 866 4.273480 GCTTACAACAGCTTGAAGTGAGAA 59.727 41.667 0.00 0.00 36.79 2.87
864 867 5.220854 GCTTACAACAGCTTGAAGTGAGAAA 60.221 40.000 0.00 0.00 36.79 2.52
865 868 6.677920 GCTTACAACAGCTTGAAGTGAGAAAA 60.678 38.462 0.00 0.00 36.79 2.29
866 869 5.240713 ACAACAGCTTGAAGTGAGAAAAG 57.759 39.130 0.00 0.00 0.00 2.27
867 870 4.702131 ACAACAGCTTGAAGTGAGAAAAGT 59.298 37.500 0.00 0.00 0.00 2.66
868 871 5.163713 ACAACAGCTTGAAGTGAGAAAAGTC 60.164 40.000 0.00 0.00 0.00 3.01
869 872 3.879892 ACAGCTTGAAGTGAGAAAAGTCC 59.120 43.478 0.00 0.00 0.00 3.85
870 873 4.133078 CAGCTTGAAGTGAGAAAAGTCCT 58.867 43.478 0.00 0.00 0.00 3.85
871 874 4.024218 CAGCTTGAAGTGAGAAAAGTCCTG 60.024 45.833 0.00 0.00 0.00 3.86
872 875 3.251972 GCTTGAAGTGAGAAAAGTCCTGG 59.748 47.826 0.00 0.00 0.00 4.45
873 876 4.708177 CTTGAAGTGAGAAAAGTCCTGGA 58.292 43.478 0.00 0.00 0.00 3.86
874 877 4.982241 TGAAGTGAGAAAAGTCCTGGAT 57.018 40.909 0.00 0.00 0.00 3.41
875 878 4.899502 TGAAGTGAGAAAAGTCCTGGATC 58.100 43.478 0.00 0.00 0.00 3.36
876 879 4.594920 TGAAGTGAGAAAAGTCCTGGATCT 59.405 41.667 0.00 0.00 0.00 2.75
877 880 5.072329 TGAAGTGAGAAAAGTCCTGGATCTT 59.928 40.000 0.00 2.71 0.00 2.40
878 881 6.270000 TGAAGTGAGAAAAGTCCTGGATCTTA 59.730 38.462 0.00 0.00 0.00 2.10
879 882 6.043854 AGTGAGAAAAGTCCTGGATCTTAC 57.956 41.667 10.40 10.40 0.00 2.34
880 883 5.782845 AGTGAGAAAAGTCCTGGATCTTACT 59.217 40.000 13.67 13.67 33.65 2.24
881 884 5.872070 GTGAGAAAAGTCCTGGATCTTACTG 59.128 44.000 0.00 0.00 0.00 2.74
882 885 5.046304 TGAGAAAAGTCCTGGATCTTACTGG 60.046 44.000 0.00 0.00 0.00 4.00
883 886 3.636153 AAAGTCCTGGATCTTACTGGC 57.364 47.619 0.00 0.00 0.00 4.85
884 887 2.559381 AGTCCTGGATCTTACTGGCT 57.441 50.000 0.00 0.00 0.00 4.75
885 888 3.689872 AGTCCTGGATCTTACTGGCTA 57.310 47.619 0.00 0.00 0.00 3.93
886 889 3.571590 AGTCCTGGATCTTACTGGCTAG 58.428 50.000 0.00 0.00 0.00 3.42
887 890 2.630580 GTCCTGGATCTTACTGGCTAGG 59.369 54.545 0.00 0.00 0.00 3.02
888 891 1.346068 CCTGGATCTTACTGGCTAGGC 59.654 57.143 9.85 9.85 0.00 3.93
907 910 0.179062 CCATGAGGTGGTGAGCTAGC 60.179 60.000 6.62 6.62 43.44 3.42
908 911 0.179062 CATGAGGTGGTGAGCTAGCC 60.179 60.000 12.13 3.49 0.00 3.93
909 912 0.618680 ATGAGGTGGTGAGCTAGCCA 60.619 55.000 12.13 6.44 0.00 4.75
910 913 1.260538 TGAGGTGGTGAGCTAGCCAG 61.261 60.000 12.13 0.00 35.14 4.85
919 922 2.513435 GCTAGCCAGCCAGCTCAC 60.513 66.667 2.29 0.00 43.67 3.51
920 923 3.028921 GCTAGCCAGCCAGCTCACT 62.029 63.158 2.29 0.00 43.67 3.41
921 924 1.601171 CTAGCCAGCCAGCTCACTT 59.399 57.895 0.57 0.00 43.67 3.16
922 925 0.461693 CTAGCCAGCCAGCTCACTTC 60.462 60.000 0.57 0.00 43.67 3.01
923 926 0.906756 TAGCCAGCCAGCTCACTTCT 60.907 55.000 0.57 0.00 43.67 2.85
924 927 0.906756 AGCCAGCCAGCTCACTTCTA 60.907 55.000 0.00 0.00 39.48 2.10
925 928 0.742635 GCCAGCCAGCTCACTTCTAC 60.743 60.000 0.00 0.00 0.00 2.59
926 929 0.610174 CCAGCCAGCTCACTTCTACA 59.390 55.000 0.00 0.00 0.00 2.74
927 930 1.405256 CCAGCCAGCTCACTTCTACAG 60.405 57.143 0.00 0.00 0.00 2.74
928 931 1.274728 CAGCCAGCTCACTTCTACAGT 59.725 52.381 0.00 0.00 35.35 3.55
929 932 2.493675 CAGCCAGCTCACTTCTACAGTA 59.506 50.000 0.00 0.00 32.76 2.74
930 933 2.494073 AGCCAGCTCACTTCTACAGTAC 59.506 50.000 0.00 0.00 32.76 2.73
931 934 2.417515 GCCAGCTCACTTCTACAGTACC 60.418 54.545 0.00 0.00 32.76 3.34
932 935 2.166664 CCAGCTCACTTCTACAGTACCC 59.833 54.545 0.00 0.00 32.76 3.69
933 936 3.093057 CAGCTCACTTCTACAGTACCCT 58.907 50.000 0.00 0.00 32.76 4.34
934 937 4.270834 CAGCTCACTTCTACAGTACCCTA 58.729 47.826 0.00 0.00 32.76 3.53
935 938 4.096682 CAGCTCACTTCTACAGTACCCTAC 59.903 50.000 0.00 0.00 32.76 3.18
936 939 4.015084 GCTCACTTCTACAGTACCCTACA 58.985 47.826 0.00 0.00 32.76 2.74
937 940 4.096682 GCTCACTTCTACAGTACCCTACAG 59.903 50.000 0.00 0.00 32.76 2.74
938 941 5.252586 TCACTTCTACAGTACCCTACAGT 57.747 43.478 0.00 0.00 32.76 3.55
939 942 5.638133 TCACTTCTACAGTACCCTACAGTT 58.362 41.667 0.00 0.00 32.76 3.16
940 943 6.073314 TCACTTCTACAGTACCCTACAGTTT 58.927 40.000 0.00 0.00 32.76 2.66
941 944 6.208204 TCACTTCTACAGTACCCTACAGTTTC 59.792 42.308 0.00 0.00 32.76 2.78
942 945 6.208994 CACTTCTACAGTACCCTACAGTTTCT 59.791 42.308 0.00 0.00 32.76 2.52
943 946 6.433716 ACTTCTACAGTACCCTACAGTTTCTC 59.566 42.308 0.00 0.00 31.97 2.87
944 947 5.259632 TCTACAGTACCCTACAGTTTCTCC 58.740 45.833 0.00 0.00 30.70 3.71
945 948 4.129317 ACAGTACCCTACAGTTTCTCCT 57.871 45.455 0.00 0.00 0.00 3.69
946 949 5.266709 ACAGTACCCTACAGTTTCTCCTA 57.733 43.478 0.00 0.00 0.00 2.94
947 950 5.262804 ACAGTACCCTACAGTTTCTCCTAG 58.737 45.833 0.00 0.00 0.00 3.02
948 951 5.222296 ACAGTACCCTACAGTTTCTCCTAGT 60.222 44.000 0.00 0.00 0.00 2.57
949 952 6.012157 ACAGTACCCTACAGTTTCTCCTAGTA 60.012 42.308 0.00 0.00 0.00 1.82
950 953 6.543100 CAGTACCCTACAGTTTCTCCTAGTAG 59.457 46.154 0.00 0.00 33.67 2.57
956 959 5.986501 ACAGTTTCTCCTAGTAGGACAAG 57.013 43.478 15.33 6.22 40.06 3.16
957 960 5.395611 ACAGTTTCTCCTAGTAGGACAAGT 58.604 41.667 15.33 10.64 40.06 3.16
958 961 5.477637 ACAGTTTCTCCTAGTAGGACAAGTC 59.522 44.000 15.33 8.61 40.06 3.01
959 962 4.701171 AGTTTCTCCTAGTAGGACAAGTCG 59.299 45.833 15.33 4.74 40.06 4.18
960 963 3.996921 TCTCCTAGTAGGACAAGTCGT 57.003 47.619 15.33 0.85 40.06 4.34
961 964 4.298103 TCTCCTAGTAGGACAAGTCGTT 57.702 45.455 15.33 0.00 40.06 3.85
962 965 5.426689 TCTCCTAGTAGGACAAGTCGTTA 57.573 43.478 15.33 0.00 40.06 3.18
963 966 5.181748 TCTCCTAGTAGGACAAGTCGTTAC 58.818 45.833 15.33 3.63 40.06 2.50
964 967 4.910195 TCCTAGTAGGACAAGTCGTTACA 58.090 43.478 15.33 0.00 40.06 2.41
965 968 4.697352 TCCTAGTAGGACAAGTCGTTACAC 59.303 45.833 15.33 2.70 40.06 2.90
966 969 3.930634 AGTAGGACAAGTCGTTACACC 57.069 47.619 12.77 0.00 0.00 4.16
967 970 2.560105 AGTAGGACAAGTCGTTACACCC 59.440 50.000 12.77 0.00 0.00 4.61
968 971 1.416243 AGGACAAGTCGTTACACCCA 58.584 50.000 0.00 0.00 0.00 4.51
969 972 1.975680 AGGACAAGTCGTTACACCCAT 59.024 47.619 0.00 0.00 0.00 4.00
970 973 2.073816 GGACAAGTCGTTACACCCATG 58.926 52.381 0.00 0.00 0.00 3.66
971 974 2.289195 GGACAAGTCGTTACACCCATGA 60.289 50.000 0.00 0.00 0.00 3.07
972 975 2.735134 GACAAGTCGTTACACCCATGAC 59.265 50.000 0.00 0.00 0.00 3.06
973 976 2.073816 CAAGTCGTTACACCCATGACC 58.926 52.381 0.00 0.00 31.42 4.02
974 977 0.611714 AGTCGTTACACCCATGACCC 59.388 55.000 0.00 0.00 31.42 4.46
975 978 0.322322 GTCGTTACACCCATGACCCA 59.678 55.000 0.00 0.00 0.00 4.51
976 979 0.322322 TCGTTACACCCATGACCCAC 59.678 55.000 0.00 0.00 0.00 4.61
977 980 0.035598 CGTTACACCCATGACCCACA 59.964 55.000 0.00 0.00 0.00 4.17
978 981 1.821216 GTTACACCCATGACCCACAG 58.179 55.000 0.00 0.00 0.00 3.66
979 982 1.073284 GTTACACCCATGACCCACAGT 59.927 52.381 0.00 0.00 0.00 3.55
980 983 2.303600 GTTACACCCATGACCCACAGTA 59.696 50.000 0.00 0.00 0.00 2.74
981 984 0.690762 ACACCCATGACCCACAGTAC 59.309 55.000 0.00 0.00 0.00 2.73
982 985 0.035439 CACCCATGACCCACAGTACC 60.035 60.000 0.00 0.00 0.00 3.34
983 986 0.474854 ACCCATGACCCACAGTACCA 60.475 55.000 0.00 0.00 0.00 3.25
984 987 0.918983 CCCATGACCCACAGTACCAT 59.081 55.000 0.00 0.00 0.00 3.55
985 988 1.134098 CCCATGACCCACAGTACCATC 60.134 57.143 0.00 0.00 0.00 3.51
986 989 1.473257 CCATGACCCACAGTACCATCG 60.473 57.143 0.00 0.00 0.00 3.84
987 990 1.480545 CATGACCCACAGTACCATCGA 59.519 52.381 0.00 0.00 0.00 3.59
988 991 1.634960 TGACCCACAGTACCATCGAA 58.365 50.000 0.00 0.00 0.00 3.71
989 992 1.548719 TGACCCACAGTACCATCGAAG 59.451 52.381 0.00 0.00 0.00 3.79
990 993 0.249398 ACCCACAGTACCATCGAAGC 59.751 55.000 0.00 0.00 0.00 3.86
991 994 0.249120 CCCACAGTACCATCGAAGCA 59.751 55.000 0.00 0.00 0.00 3.91
992 995 1.359848 CCACAGTACCATCGAAGCAC 58.640 55.000 0.00 0.00 0.00 4.40
993 996 1.359848 CACAGTACCATCGAAGCACC 58.640 55.000 0.00 0.00 0.00 5.01
994 997 0.973632 ACAGTACCATCGAAGCACCA 59.026 50.000 0.00 0.00 0.00 4.17
995 998 1.337823 ACAGTACCATCGAAGCACCAC 60.338 52.381 0.00 0.00 0.00 4.16
996 999 0.249398 AGTACCATCGAAGCACCACC 59.751 55.000 0.00 0.00 0.00 4.61
997 1000 1.082117 GTACCATCGAAGCACCACCG 61.082 60.000 0.00 0.00 0.00 4.94
998 1001 1.252215 TACCATCGAAGCACCACCGA 61.252 55.000 0.00 0.00 36.72 4.69
999 1002 1.375396 CCATCGAAGCACCACCGAA 60.375 57.895 0.00 0.00 35.87 4.30
1000 1003 1.361668 CCATCGAAGCACCACCGAAG 61.362 60.000 0.00 0.00 35.87 3.79
1001 1004 0.670546 CATCGAAGCACCACCGAAGT 60.671 55.000 0.00 0.00 35.87 3.01
1002 1005 0.034896 ATCGAAGCACCACCGAAGTT 59.965 50.000 0.00 0.00 35.87 2.66
1003 1006 0.878523 TCGAAGCACCACCGAAGTTG 60.879 55.000 0.00 0.00 0.00 3.16
1004 1007 1.282875 GAAGCACCACCGAAGTTGC 59.717 57.895 0.00 0.00 0.00 4.17
1005 1008 2.130073 GAAGCACCACCGAAGTTGCC 62.130 60.000 0.00 0.00 0.00 4.52
1006 1009 2.594592 GCACCACCGAAGTTGCCT 60.595 61.111 0.00 0.00 0.00 4.75
1007 1010 2.193536 GCACCACCGAAGTTGCCTT 61.194 57.895 0.00 0.00 0.00 4.35
1008 1011 1.734388 GCACCACCGAAGTTGCCTTT 61.734 55.000 0.00 0.00 0.00 3.11
1009 1012 0.030638 CACCACCGAAGTTGCCTTTG 59.969 55.000 0.00 0.00 32.61 2.77
1010 1013 0.395173 ACCACCGAAGTTGCCTTTGT 60.395 50.000 0.00 0.00 31.08 2.83
1011 1014 0.744281 CCACCGAAGTTGCCTTTGTT 59.256 50.000 0.00 0.00 31.08 2.83
1012 1015 1.136110 CCACCGAAGTTGCCTTTGTTT 59.864 47.619 0.00 0.00 31.08 2.83
1013 1016 2.192624 CACCGAAGTTGCCTTTGTTTG 58.807 47.619 0.00 0.00 31.08 2.93
1014 1017 2.096248 ACCGAAGTTGCCTTTGTTTGA 58.904 42.857 0.00 0.00 31.08 2.69
1015 1018 2.693074 ACCGAAGTTGCCTTTGTTTGAT 59.307 40.909 0.00 0.00 31.08 2.57
1016 1019 3.132111 ACCGAAGTTGCCTTTGTTTGATT 59.868 39.130 0.00 0.00 31.08 2.57
1017 1020 3.490526 CCGAAGTTGCCTTTGTTTGATTG 59.509 43.478 0.00 0.00 31.08 2.67
1018 1021 4.358851 CGAAGTTGCCTTTGTTTGATTGA 58.641 39.130 0.00 0.00 0.00 2.57
1019 1022 4.207019 CGAAGTTGCCTTTGTTTGATTGAC 59.793 41.667 0.00 0.00 0.00 3.18
1020 1023 5.343307 AAGTTGCCTTTGTTTGATTGACT 57.657 34.783 0.00 0.00 0.00 3.41
1021 1024 4.685924 AGTTGCCTTTGTTTGATTGACTG 58.314 39.130 0.00 0.00 0.00 3.51
1022 1025 3.731652 TGCCTTTGTTTGATTGACTGG 57.268 42.857 0.00 0.00 0.00 4.00
1023 1026 3.030291 TGCCTTTGTTTGATTGACTGGT 58.970 40.909 0.00 0.00 0.00 4.00
1024 1027 3.450457 TGCCTTTGTTTGATTGACTGGTT 59.550 39.130 0.00 0.00 0.00 3.67
1025 1028 4.081198 TGCCTTTGTTTGATTGACTGGTTT 60.081 37.500 0.00 0.00 0.00 3.27
1026 1029 4.875536 GCCTTTGTTTGATTGACTGGTTTT 59.124 37.500 0.00 0.00 0.00 2.43
1027 1030 6.045955 GCCTTTGTTTGATTGACTGGTTTTA 58.954 36.000 0.00 0.00 0.00 1.52
1028 1031 6.705825 GCCTTTGTTTGATTGACTGGTTTTAT 59.294 34.615 0.00 0.00 0.00 1.40
1029 1032 7.226523 GCCTTTGTTTGATTGACTGGTTTTATT 59.773 33.333 0.00 0.00 0.00 1.40
1030 1033 9.108284 CCTTTGTTTGATTGACTGGTTTTATTT 57.892 29.630 0.00 0.00 0.00 1.40
1057 1060 4.327982 TTTTGCGGGAATGTTTGATTGA 57.672 36.364 0.00 0.00 0.00 2.57
1058 1061 3.296322 TTGCGGGAATGTTTGATTGAC 57.704 42.857 0.00 0.00 0.00 3.18
1059 1062 2.513753 TGCGGGAATGTTTGATTGACT 58.486 42.857 0.00 0.00 0.00 3.41
1060 1063 2.228582 TGCGGGAATGTTTGATTGACTG 59.771 45.455 0.00 0.00 0.00 3.51
1061 1064 2.487762 GCGGGAATGTTTGATTGACTGA 59.512 45.455 0.00 0.00 0.00 3.41
1062 1065 3.129287 GCGGGAATGTTTGATTGACTGAT 59.871 43.478 0.00 0.00 0.00 2.90
1063 1066 4.380867 GCGGGAATGTTTGATTGACTGATT 60.381 41.667 0.00 0.00 0.00 2.57
1064 1067 5.097529 CGGGAATGTTTGATTGACTGATTG 58.902 41.667 0.00 0.00 0.00 2.67
1065 1068 5.335897 CGGGAATGTTTGATTGACTGATTGT 60.336 40.000 0.00 0.00 0.00 2.71
1082 1086 4.036027 TGATTGTCGACCCGTCTCTTATAC 59.964 45.833 14.12 0.00 0.00 1.47
1087 1091 4.275443 GTCGACCCGTCTCTTATACTGAAT 59.725 45.833 3.51 0.00 0.00 2.57
1088 1092 4.514441 TCGACCCGTCTCTTATACTGAATC 59.486 45.833 0.00 0.00 0.00 2.52
1090 1094 4.543689 ACCCGTCTCTTATACTGAATCCA 58.456 43.478 0.00 0.00 0.00 3.41
1091 1095 4.341520 ACCCGTCTCTTATACTGAATCCAC 59.658 45.833 0.00 0.00 0.00 4.02
1092 1096 4.341235 CCCGTCTCTTATACTGAATCCACA 59.659 45.833 0.00 0.00 0.00 4.17
1093 1097 5.508153 CCCGTCTCTTATACTGAATCCACAG 60.508 48.000 0.00 0.00 42.78 3.66
1094 1098 5.299531 CCGTCTCTTATACTGAATCCACAGA 59.700 44.000 0.00 0.00 40.63 3.41
1095 1099 6.434596 CGTCTCTTATACTGAATCCACAGAG 58.565 44.000 0.00 0.00 40.63 3.35
1134 1138 2.585869 CGCCACGCACGATATGGAC 61.586 63.158 0.00 0.00 35.33 4.02
1135 1139 2.585869 GCCACGCACGATATGGACG 61.586 63.158 0.00 0.00 35.33 4.79
1136 1140 1.949133 CCACGCACGATATGGACGG 60.949 63.158 0.00 0.00 35.33 4.79
1137 1141 2.279252 ACGCACGATATGGACGGC 60.279 61.111 0.00 0.00 34.93 5.68
1138 1142 2.279186 CGCACGATATGGACGGCA 60.279 61.111 0.00 0.00 34.93 5.69
1140 1144 1.641677 GCACGATATGGACGGCAAC 59.358 57.895 0.00 0.00 34.93 4.17
1267 1283 3.554696 TACCCGGCGCACCAAATGT 62.555 57.895 10.83 0.00 34.57 2.71
1499 1515 1.736126 CTACGTCTACGAGAAGCACCA 59.264 52.381 9.86 0.00 43.02 4.17
1665 1681 2.496817 CTCTGGCACTACCTCCGC 59.503 66.667 0.00 0.00 40.22 5.54
1680 1696 4.383602 CGCAAAGCCAACCGTCCG 62.384 66.667 0.00 0.00 0.00 4.79
2016 2032 1.493311 GAAGTTCAGCAACTCGGCG 59.507 57.895 0.00 0.00 42.45 6.46
2304 5121 3.191162 TCAGAAAACCGCCATCATTCAAG 59.809 43.478 0.00 0.00 0.00 3.02
2567 7415 3.755628 GCCGTCACTACCTCGCCA 61.756 66.667 0.00 0.00 0.00 5.69
2620 7468 1.685224 CACCTTTAGCTCCCCTGCA 59.315 57.895 0.00 0.00 34.99 4.41
2628 7476 4.785453 CTCCCCTGCACGCTTCCC 62.785 72.222 0.00 0.00 0.00 3.97
2633 7481 3.710722 CTGCACGCTTCCCCTCCT 61.711 66.667 0.00 0.00 0.00 3.69
2753 7629 4.148825 GCCCGACTGCATCCTCGT 62.149 66.667 7.54 0.00 0.00 4.18
2852 7735 0.905337 CCTCTCCTCCCGTTTCCTGT 60.905 60.000 0.00 0.00 0.00 4.00
3212 8396 2.758327 TAGGCACGGCGATGGACT 60.758 61.111 16.62 12.89 0.00 3.85
3295 10639 4.814294 GACGGGCGGCGTCTTCAT 62.814 66.667 12.73 0.00 33.98 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
692 695 2.237392 CAGAGGGAGTAGTTGGAAAGGG 59.763 54.545 0.00 0.00 0.00 3.95
693 696 2.355209 GCAGAGGGAGTAGTTGGAAAGG 60.355 54.545 0.00 0.00 0.00 3.11
694 697 2.303022 TGCAGAGGGAGTAGTTGGAAAG 59.697 50.000 0.00 0.00 0.00 2.62
695 698 2.038557 GTGCAGAGGGAGTAGTTGGAAA 59.961 50.000 0.00 0.00 0.00 3.13
696 699 1.623811 GTGCAGAGGGAGTAGTTGGAA 59.376 52.381 0.00 0.00 0.00 3.53
697 700 1.203187 AGTGCAGAGGGAGTAGTTGGA 60.203 52.381 0.00 0.00 0.00 3.53
698 701 1.270907 AGTGCAGAGGGAGTAGTTGG 58.729 55.000 0.00 0.00 0.00 3.77
699 702 4.744795 ATTAGTGCAGAGGGAGTAGTTG 57.255 45.455 0.00 0.00 0.00 3.16
700 703 8.005388 TCTTATATTAGTGCAGAGGGAGTAGTT 58.995 37.037 0.00 0.00 0.00 2.24
701 704 7.527796 TCTTATATTAGTGCAGAGGGAGTAGT 58.472 38.462 0.00 0.00 0.00 2.73
702 705 7.668052 ACTCTTATATTAGTGCAGAGGGAGTAG 59.332 40.741 0.00 0.00 36.14 2.57
703 706 7.448777 CACTCTTATATTAGTGCAGAGGGAGTA 59.551 40.741 0.00 0.00 37.21 2.59
704 707 6.266558 CACTCTTATATTAGTGCAGAGGGAGT 59.733 42.308 0.00 0.00 37.21 3.85
705 708 6.266558 ACACTCTTATATTAGTGCAGAGGGAG 59.733 42.308 12.58 0.00 45.65 4.30
706 709 6.136857 ACACTCTTATATTAGTGCAGAGGGA 58.863 40.000 12.58 0.00 45.65 4.20
707 710 6.412362 ACACTCTTATATTAGTGCAGAGGG 57.588 41.667 12.58 5.71 45.65 4.30
708 711 9.469807 CTAAACACTCTTATATTAGTGCAGAGG 57.530 37.037 12.58 0.92 45.65 3.69
756 759 9.387257 CCCTCGGTAAACTAATATAAAAGTGTT 57.613 33.333 0.00 0.00 0.00 3.32
757 760 8.761689 TCCCTCGGTAAACTAATATAAAAGTGT 58.238 33.333 0.00 0.00 0.00 3.55
758 761 9.257651 CTCCCTCGGTAAACTAATATAAAAGTG 57.742 37.037 0.00 0.00 0.00 3.16
759 762 8.985922 ACTCCCTCGGTAAACTAATATAAAAGT 58.014 33.333 0.00 0.00 0.00 2.66
762 765 9.646522 AGTACTCCCTCGGTAAACTAATATAAA 57.353 33.333 0.00 0.00 0.00 1.40
765 768 9.819754 ATTAGTACTCCCTCGGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
766 769 9.646522 AATTAGTACTCCCTCGGTAAACTAATA 57.353 33.333 0.00 0.00 30.61 0.98
767 770 8.544687 AATTAGTACTCCCTCGGTAAACTAAT 57.455 34.615 0.00 0.00 31.64 1.73
768 771 7.961326 AATTAGTACTCCCTCGGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
769 772 9.646522 ATTAATTAGTACTCCCTCGGTAAACTA 57.353 33.333 0.00 0.00 0.00 2.24
770 773 7.961326 TTAATTAGTACTCCCTCGGTAAACT 57.039 36.000 0.00 0.00 0.00 2.66
771 774 9.605275 AAATTAATTAGTACTCCCTCGGTAAAC 57.395 33.333 0.00 0.00 0.00 2.01
801 804 9.391227 AGGATTTAACTGGATTATCTCATCTCT 57.609 33.333 0.00 0.00 0.00 3.10
803 806 9.790344 CAAGGATTTAACTGGATTATCTCATCT 57.210 33.333 0.00 0.00 0.00 2.90
804 807 9.007901 CCAAGGATTTAACTGGATTATCTCATC 57.992 37.037 0.00 0.00 0.00 2.92
805 808 8.727149 TCCAAGGATTTAACTGGATTATCTCAT 58.273 33.333 0.00 0.00 0.00 2.90
806 809 7.993183 GTCCAAGGATTTAACTGGATTATCTCA 59.007 37.037 0.00 0.00 0.00 3.27
807 810 8.214364 AGTCCAAGGATTTAACTGGATTATCTC 58.786 37.037 0.00 0.00 0.00 2.75
808 811 8.107196 AGTCCAAGGATTTAACTGGATTATCT 57.893 34.615 0.00 0.00 0.00 1.98
809 812 8.624776 CAAGTCCAAGGATTTAACTGGATTATC 58.375 37.037 0.00 0.00 0.00 1.75
810 813 8.116026 ACAAGTCCAAGGATTTAACTGGATTAT 58.884 33.333 0.00 0.00 0.00 1.28
811 814 7.393234 CACAAGTCCAAGGATTTAACTGGATTA 59.607 37.037 0.00 0.00 0.00 1.75
812 815 6.209391 CACAAGTCCAAGGATTTAACTGGATT 59.791 38.462 0.00 0.00 0.00 3.01
813 816 5.711976 CACAAGTCCAAGGATTTAACTGGAT 59.288 40.000 0.00 0.00 0.00 3.41
814 817 5.070001 CACAAGTCCAAGGATTTAACTGGA 58.930 41.667 0.00 0.00 0.00 3.86
815 818 4.827284 ACACAAGTCCAAGGATTTAACTGG 59.173 41.667 0.00 0.00 0.00 4.00
816 819 5.278463 CCACACAAGTCCAAGGATTTAACTG 60.278 44.000 0.00 0.00 0.00 3.16
817 820 4.827284 CCACACAAGTCCAAGGATTTAACT 59.173 41.667 0.00 0.00 0.00 2.24
818 821 4.558697 GCCACACAAGTCCAAGGATTTAAC 60.559 45.833 0.00 0.00 0.00 2.01
819 822 3.572255 GCCACACAAGTCCAAGGATTTAA 59.428 43.478 0.00 0.00 0.00 1.52
820 823 3.153919 GCCACACAAGTCCAAGGATTTA 58.846 45.455 0.00 0.00 0.00 1.40
821 824 1.963515 GCCACACAAGTCCAAGGATTT 59.036 47.619 0.00 0.00 0.00 2.17
822 825 1.145738 AGCCACACAAGTCCAAGGATT 59.854 47.619 0.00 0.00 0.00 3.01
823 826 0.773644 AGCCACACAAGTCCAAGGAT 59.226 50.000 0.00 0.00 0.00 3.24
824 827 0.550914 AAGCCACACAAGTCCAAGGA 59.449 50.000 0.00 0.00 0.00 3.36
825 828 1.880027 GTAAGCCACACAAGTCCAAGG 59.120 52.381 0.00 0.00 0.00 3.61
826 829 2.571212 TGTAAGCCACACAAGTCCAAG 58.429 47.619 0.00 0.00 30.04 3.61
827 830 2.685897 GTTGTAAGCCACACAAGTCCAA 59.314 45.455 0.00 0.00 36.61 3.53
828 831 2.294074 GTTGTAAGCCACACAAGTCCA 58.706 47.619 0.00 0.00 36.61 4.02
829 832 2.290641 CTGTTGTAAGCCACACAAGTCC 59.709 50.000 0.00 0.00 36.61 3.85
830 833 2.287009 GCTGTTGTAAGCCACACAAGTC 60.287 50.000 0.00 0.00 36.61 3.01
831 834 1.676006 GCTGTTGTAAGCCACACAAGT 59.324 47.619 0.00 0.00 36.61 3.16
832 835 1.949525 AGCTGTTGTAAGCCACACAAG 59.050 47.619 0.00 0.00 44.68 3.16
833 836 2.051334 AGCTGTTGTAAGCCACACAA 57.949 45.000 0.00 0.00 44.68 3.33
834 837 1.675483 CAAGCTGTTGTAAGCCACACA 59.325 47.619 0.00 0.00 44.68 3.72
835 838 1.946768 TCAAGCTGTTGTAAGCCACAC 59.053 47.619 0.00 0.00 44.68 3.82
836 839 2.340210 TCAAGCTGTTGTAAGCCACA 57.660 45.000 0.00 0.00 44.68 4.17
837 840 2.618709 ACTTCAAGCTGTTGTAAGCCAC 59.381 45.455 0.00 0.00 44.68 5.01
838 841 2.618241 CACTTCAAGCTGTTGTAAGCCA 59.382 45.455 0.00 0.00 44.68 4.75
839 842 2.878406 TCACTTCAAGCTGTTGTAAGCC 59.122 45.455 0.00 0.00 44.68 4.35
840 843 3.809832 TCTCACTTCAAGCTGTTGTAAGC 59.190 43.478 0.00 0.00 43.88 3.09
841 844 5.991328 TTCTCACTTCAAGCTGTTGTAAG 57.009 39.130 0.00 0.00 34.98 2.34
842 845 6.374333 ACTTTTCTCACTTCAAGCTGTTGTAA 59.626 34.615 0.00 0.00 34.98 2.41
843 846 5.880332 ACTTTTCTCACTTCAAGCTGTTGTA 59.120 36.000 0.00 0.00 34.98 2.41
844 847 4.702131 ACTTTTCTCACTTCAAGCTGTTGT 59.298 37.500 0.00 0.00 34.98 3.32
845 848 5.240713 ACTTTTCTCACTTCAAGCTGTTG 57.759 39.130 0.00 0.00 34.67 3.33
846 849 4.336713 GGACTTTTCTCACTTCAAGCTGTT 59.663 41.667 0.00 0.00 0.00 3.16
847 850 3.879892 GGACTTTTCTCACTTCAAGCTGT 59.120 43.478 0.00 0.00 0.00 4.40
848 851 4.024218 CAGGACTTTTCTCACTTCAAGCTG 60.024 45.833 0.00 0.00 0.00 4.24
849 852 4.133078 CAGGACTTTTCTCACTTCAAGCT 58.867 43.478 0.00 0.00 0.00 3.74
850 853 3.251972 CCAGGACTTTTCTCACTTCAAGC 59.748 47.826 0.00 0.00 0.00 4.01
851 854 4.708177 TCCAGGACTTTTCTCACTTCAAG 58.292 43.478 0.00 0.00 0.00 3.02
852 855 4.771114 TCCAGGACTTTTCTCACTTCAA 57.229 40.909 0.00 0.00 0.00 2.69
853 856 4.594920 AGATCCAGGACTTTTCTCACTTCA 59.405 41.667 0.00 0.00 0.00 3.02
854 857 5.159273 AGATCCAGGACTTTTCTCACTTC 57.841 43.478 0.00 0.00 0.00 3.01
855 858 5.574970 AAGATCCAGGACTTTTCTCACTT 57.425 39.130 0.00 0.00 0.00 3.16
856 859 5.782845 AGTAAGATCCAGGACTTTTCTCACT 59.217 40.000 8.93 0.00 0.00 3.41
857 860 5.872070 CAGTAAGATCCAGGACTTTTCTCAC 59.128 44.000 8.93 0.00 0.00 3.51
858 861 5.046304 CCAGTAAGATCCAGGACTTTTCTCA 60.046 44.000 8.93 0.00 0.00 3.27
859 862 5.423886 CCAGTAAGATCCAGGACTTTTCTC 58.576 45.833 8.93 0.00 0.00 2.87
860 863 4.323868 GCCAGTAAGATCCAGGACTTTTCT 60.324 45.833 8.93 0.00 0.00 2.52
861 864 3.942115 GCCAGTAAGATCCAGGACTTTTC 59.058 47.826 8.93 0.00 0.00 2.29
862 865 3.589288 AGCCAGTAAGATCCAGGACTTTT 59.411 43.478 8.93 0.00 0.00 2.27
863 866 3.185455 AGCCAGTAAGATCCAGGACTTT 58.815 45.455 8.93 1.96 0.00 2.66
864 867 2.839228 AGCCAGTAAGATCCAGGACTT 58.161 47.619 0.00 0.20 0.00 3.01
865 868 2.559381 AGCCAGTAAGATCCAGGACT 57.441 50.000 0.00 0.00 0.00 3.85
866 869 2.630580 CCTAGCCAGTAAGATCCAGGAC 59.369 54.545 0.00 0.00 0.00 3.85
867 870 2.964209 CCTAGCCAGTAAGATCCAGGA 58.036 52.381 0.00 0.00 0.00 3.86
868 871 1.346068 GCCTAGCCAGTAAGATCCAGG 59.654 57.143 0.00 0.00 0.00 4.45
869 872 2.829741 GCCTAGCCAGTAAGATCCAG 57.170 55.000 0.00 0.00 0.00 3.86
889 892 0.179062 GGCTAGCTCACCACCTCATG 60.179 60.000 15.72 0.00 0.00 3.07
890 893 0.618680 TGGCTAGCTCACCACCTCAT 60.619 55.000 15.72 0.00 0.00 2.90
891 894 1.229177 TGGCTAGCTCACCACCTCA 60.229 57.895 15.72 0.00 0.00 3.86
892 895 1.519719 CTGGCTAGCTCACCACCTC 59.480 63.158 15.72 0.00 0.00 3.85
893 896 2.664081 GCTGGCTAGCTCACCACCT 61.664 63.158 15.78 0.00 46.57 4.00
894 897 2.124942 GCTGGCTAGCTCACCACC 60.125 66.667 15.78 0.00 46.57 4.61
903 906 0.461693 GAAGTGAGCTGGCTGGCTAG 60.462 60.000 0.00 1.54 43.20 3.42
904 907 0.906756 AGAAGTGAGCTGGCTGGCTA 60.907 55.000 0.00 0.00 43.20 3.93
905 908 0.906756 TAGAAGTGAGCTGGCTGGCT 60.907 55.000 0.00 5.34 46.11 4.75
906 909 0.742635 GTAGAAGTGAGCTGGCTGGC 60.743 60.000 0.00 0.00 0.00 4.85
907 910 0.610174 TGTAGAAGTGAGCTGGCTGG 59.390 55.000 0.00 0.00 0.00 4.85
908 911 1.274728 ACTGTAGAAGTGAGCTGGCTG 59.725 52.381 0.00 0.00 37.88 4.85
909 912 1.638529 ACTGTAGAAGTGAGCTGGCT 58.361 50.000 0.00 0.00 37.88 4.75
910 913 2.417515 GGTACTGTAGAAGTGAGCTGGC 60.418 54.545 0.00 0.00 40.26 4.85
911 914 2.166664 GGGTACTGTAGAAGTGAGCTGG 59.833 54.545 0.00 0.00 40.26 4.85
912 915 3.093057 AGGGTACTGTAGAAGTGAGCTG 58.907 50.000 0.00 0.00 40.26 4.24
913 916 3.459710 AGGGTACTGTAGAAGTGAGCT 57.540 47.619 0.00 0.00 40.26 4.09
914 917 4.015084 TGTAGGGTACTGTAGAAGTGAGC 58.985 47.826 0.00 0.00 40.26 4.26
915 918 5.254901 ACTGTAGGGTACTGTAGAAGTGAG 58.745 45.833 0.00 0.00 40.26 3.51
916 919 5.252586 ACTGTAGGGTACTGTAGAAGTGA 57.747 43.478 0.00 0.00 40.26 3.41
917 920 5.979288 AACTGTAGGGTACTGTAGAAGTG 57.021 43.478 0.00 0.00 40.26 3.16
918 921 6.313324 AGAAACTGTAGGGTACTGTAGAAGT 58.687 40.000 0.00 0.00 43.40 3.01
919 922 6.127675 GGAGAAACTGTAGGGTACTGTAGAAG 60.128 46.154 0.00 0.00 39.49 2.85
920 923 5.713861 GGAGAAACTGTAGGGTACTGTAGAA 59.286 44.000 0.00 0.00 39.49 2.10
921 924 5.014966 AGGAGAAACTGTAGGGTACTGTAGA 59.985 44.000 0.00 0.00 39.49 2.59
922 925 5.262804 AGGAGAAACTGTAGGGTACTGTAG 58.737 45.833 0.00 0.00 39.49 2.74
923 926 5.266709 AGGAGAAACTGTAGGGTACTGTA 57.733 43.478 0.00 0.00 39.49 2.74
924 927 4.129317 AGGAGAAACTGTAGGGTACTGT 57.871 45.455 0.00 0.00 41.72 3.55
925 928 5.262804 ACTAGGAGAAACTGTAGGGTACTG 58.737 45.833 0.00 0.00 0.00 2.74
926 929 5.533333 ACTAGGAGAAACTGTAGGGTACT 57.467 43.478 0.00 0.00 0.00 2.73
927 930 5.827267 CCTACTAGGAGAAACTGTAGGGTAC 59.173 48.000 2.52 0.00 43.72 3.34
928 931 5.733154 TCCTACTAGGAGAAACTGTAGGGTA 59.267 44.000 2.52 0.00 46.02 3.69
929 932 4.543337 TCCTACTAGGAGAAACTGTAGGGT 59.457 45.833 2.52 0.00 46.02 4.34
930 933 4.888823 GTCCTACTAGGAGAAACTGTAGGG 59.111 50.000 2.52 0.00 46.90 3.53
931 934 5.507637 TGTCCTACTAGGAGAAACTGTAGG 58.492 45.833 2.52 10.28 46.90 3.18
932 935 6.660094 ACTTGTCCTACTAGGAGAAACTGTAG 59.340 42.308 14.15 5.75 46.90 2.74
933 936 6.550163 ACTTGTCCTACTAGGAGAAACTGTA 58.450 40.000 14.15 0.00 46.90 2.74
934 937 5.395611 ACTTGTCCTACTAGGAGAAACTGT 58.604 41.667 14.15 7.55 46.90 3.55
935 938 5.392165 CGACTTGTCCTACTAGGAGAAACTG 60.392 48.000 14.15 7.03 46.90 3.16
936 939 4.701171 CGACTTGTCCTACTAGGAGAAACT 59.299 45.833 14.15 4.46 46.90 2.66
937 940 4.458642 ACGACTTGTCCTACTAGGAGAAAC 59.541 45.833 14.15 10.65 46.90 2.78
938 941 4.660168 ACGACTTGTCCTACTAGGAGAAA 58.340 43.478 14.15 7.72 46.90 2.52
939 942 4.298103 ACGACTTGTCCTACTAGGAGAA 57.702 45.455 12.91 12.91 46.90 2.87
940 943 3.996921 ACGACTTGTCCTACTAGGAGA 57.003 47.619 2.52 1.09 46.90 3.71
941 944 4.940046 TGTAACGACTTGTCCTACTAGGAG 59.060 45.833 4.91 0.00 46.90 3.69
942 945 4.697352 GTGTAACGACTTGTCCTACTAGGA 59.303 45.833 0.03 0.03 43.43 2.94
943 946 4.142513 GGTGTAACGACTTGTCCTACTAGG 60.143 50.000 0.00 0.00 38.12 3.02
944 947 4.142513 GGGTGTAACGACTTGTCCTACTAG 60.143 50.000 0.00 0.00 38.12 2.57
945 948 3.758554 GGGTGTAACGACTTGTCCTACTA 59.241 47.826 0.00 0.00 38.12 1.82
946 949 2.560105 GGGTGTAACGACTTGTCCTACT 59.440 50.000 0.00 0.00 38.12 2.57
947 950 2.297033 TGGGTGTAACGACTTGTCCTAC 59.703 50.000 0.00 0.00 38.12 3.18
948 951 2.596346 TGGGTGTAACGACTTGTCCTA 58.404 47.619 0.00 0.00 38.12 2.94
949 952 1.416243 TGGGTGTAACGACTTGTCCT 58.584 50.000 0.00 0.00 38.12 3.85
950 953 2.073816 CATGGGTGTAACGACTTGTCC 58.926 52.381 0.00 0.00 38.12 4.02
951 954 2.735134 GTCATGGGTGTAACGACTTGTC 59.265 50.000 0.00 0.00 38.12 3.18
952 955 2.549349 GGTCATGGGTGTAACGACTTGT 60.549 50.000 0.00 0.00 38.12 3.16
953 956 2.073816 GGTCATGGGTGTAACGACTTG 58.926 52.381 0.00 0.00 38.12 3.16
954 957 1.002773 GGGTCATGGGTGTAACGACTT 59.997 52.381 0.00 0.00 38.12 3.01
955 958 0.611714 GGGTCATGGGTGTAACGACT 59.388 55.000 0.00 0.00 38.12 4.18
956 959 0.322322 TGGGTCATGGGTGTAACGAC 59.678 55.000 0.00 0.00 38.12 4.34
957 960 0.322322 GTGGGTCATGGGTGTAACGA 59.678 55.000 0.00 0.00 38.12 3.85
958 961 0.035598 TGTGGGTCATGGGTGTAACG 59.964 55.000 0.00 0.00 38.12 3.18
959 962 1.073284 ACTGTGGGTCATGGGTGTAAC 59.927 52.381 0.00 0.00 0.00 2.50
960 963 1.440618 ACTGTGGGTCATGGGTGTAA 58.559 50.000 0.00 0.00 0.00 2.41
961 964 1.903860 GTACTGTGGGTCATGGGTGTA 59.096 52.381 0.00 0.00 0.00 2.90
962 965 0.690762 GTACTGTGGGTCATGGGTGT 59.309 55.000 0.00 0.00 0.00 4.16
963 966 0.035439 GGTACTGTGGGTCATGGGTG 60.035 60.000 0.00 0.00 0.00 4.61
964 967 0.474854 TGGTACTGTGGGTCATGGGT 60.475 55.000 0.00 0.00 0.00 4.51
965 968 0.918983 ATGGTACTGTGGGTCATGGG 59.081 55.000 0.00 0.00 0.00 4.00
966 969 1.473257 CGATGGTACTGTGGGTCATGG 60.473 57.143 0.00 0.00 0.00 3.66
967 970 1.480545 TCGATGGTACTGTGGGTCATG 59.519 52.381 0.00 0.00 0.00 3.07
968 971 1.860641 TCGATGGTACTGTGGGTCAT 58.139 50.000 0.00 0.00 0.00 3.06
969 972 1.548719 CTTCGATGGTACTGTGGGTCA 59.451 52.381 0.00 0.00 0.00 4.02
970 973 1.739371 GCTTCGATGGTACTGTGGGTC 60.739 57.143 0.00 0.00 0.00 4.46
971 974 0.249398 GCTTCGATGGTACTGTGGGT 59.751 55.000 0.00 0.00 0.00 4.51
972 975 0.249120 TGCTTCGATGGTACTGTGGG 59.751 55.000 0.00 0.00 0.00 4.61
973 976 1.359848 GTGCTTCGATGGTACTGTGG 58.640 55.000 0.00 0.00 0.00 4.17
974 977 1.337728 TGGTGCTTCGATGGTACTGTG 60.338 52.381 0.00 0.00 0.00 3.66
975 978 0.973632 TGGTGCTTCGATGGTACTGT 59.026 50.000 0.00 0.00 0.00 3.55
976 979 1.359848 GTGGTGCTTCGATGGTACTG 58.640 55.000 0.00 0.00 0.00 2.74
977 980 0.249398 GGTGGTGCTTCGATGGTACT 59.751 55.000 0.00 0.00 0.00 2.73
978 981 1.082117 CGGTGGTGCTTCGATGGTAC 61.082 60.000 0.00 0.01 0.00 3.34
979 982 1.216977 CGGTGGTGCTTCGATGGTA 59.783 57.895 0.00 0.00 0.00 3.25
980 983 2.047274 CGGTGGTGCTTCGATGGT 60.047 61.111 0.00 0.00 0.00 3.55
981 984 1.361668 CTTCGGTGGTGCTTCGATGG 61.362 60.000 0.00 0.00 32.80 3.51
982 985 0.670546 ACTTCGGTGGTGCTTCGATG 60.671 55.000 0.00 0.00 35.27 3.84
983 986 0.034896 AACTTCGGTGGTGCTTCGAT 59.965 50.000 0.00 0.00 32.80 3.59
984 987 0.878523 CAACTTCGGTGGTGCTTCGA 60.879 55.000 0.00 0.00 0.00 3.71
985 988 1.569493 CAACTTCGGTGGTGCTTCG 59.431 57.895 0.00 0.00 0.00 3.79
986 989 1.282875 GCAACTTCGGTGGTGCTTC 59.717 57.895 10.52 0.00 0.00 3.86
987 990 2.193536 GGCAACTTCGGTGGTGCTT 61.194 57.895 15.76 0.00 0.00 3.91
988 991 2.594592 GGCAACTTCGGTGGTGCT 60.595 61.111 15.76 0.00 0.00 4.40
1000 1003 3.803778 CCAGTCAATCAAACAAAGGCAAC 59.196 43.478 0.00 0.00 0.00 4.17
1001 1004 3.450457 ACCAGTCAATCAAACAAAGGCAA 59.550 39.130 0.00 0.00 0.00 4.52
1002 1005 3.030291 ACCAGTCAATCAAACAAAGGCA 58.970 40.909 0.00 0.00 0.00 4.75
1003 1006 3.733443 ACCAGTCAATCAAACAAAGGC 57.267 42.857 0.00 0.00 0.00 4.35
1004 1007 8.661352 AATAAAACCAGTCAATCAAACAAAGG 57.339 30.769 0.00 0.00 0.00 3.11
1035 1038 4.509600 GTCAATCAAACATTCCCGCAAAAA 59.490 37.500 0.00 0.00 0.00 1.94
1036 1039 4.054671 GTCAATCAAACATTCCCGCAAAA 58.945 39.130 0.00 0.00 0.00 2.44
1037 1040 3.320541 AGTCAATCAAACATTCCCGCAAA 59.679 39.130 0.00 0.00 0.00 3.68
1038 1041 2.890311 AGTCAATCAAACATTCCCGCAA 59.110 40.909 0.00 0.00 0.00 4.85
1039 1042 2.228582 CAGTCAATCAAACATTCCCGCA 59.771 45.455 0.00 0.00 0.00 5.69
1040 1043 2.487762 TCAGTCAATCAAACATTCCCGC 59.512 45.455 0.00 0.00 0.00 6.13
1041 1044 4.970662 ATCAGTCAATCAAACATTCCCG 57.029 40.909 0.00 0.00 0.00 5.14
1042 1045 6.029346 ACAATCAGTCAATCAAACATTCCC 57.971 37.500 0.00 0.00 0.00 3.97
1056 1059 0.526662 AGACGGGTCGACAATCAGTC 59.473 55.000 18.91 15.36 44.02 3.51
1057 1060 0.526662 GAGACGGGTCGACAATCAGT 59.473 55.000 18.91 6.84 34.09 3.41
1058 1061 0.811915 AGAGACGGGTCGACAATCAG 59.188 55.000 18.91 3.35 34.09 2.90
1059 1062 1.254026 AAGAGACGGGTCGACAATCA 58.746 50.000 18.91 0.00 34.09 2.57
1060 1063 3.712091 ATAAGAGACGGGTCGACAATC 57.288 47.619 18.91 11.10 34.09 2.67
1061 1064 4.036498 CAGTATAAGAGACGGGTCGACAAT 59.964 45.833 18.91 0.93 34.09 2.71
1062 1065 3.376234 CAGTATAAGAGACGGGTCGACAA 59.624 47.826 18.91 0.00 34.09 3.18
1063 1066 2.941064 CAGTATAAGAGACGGGTCGACA 59.059 50.000 18.91 0.00 34.09 4.35
1064 1067 3.201290 TCAGTATAAGAGACGGGTCGAC 58.799 50.000 7.13 7.13 34.09 4.20
1065 1068 3.548745 TCAGTATAAGAGACGGGTCGA 57.451 47.619 0.00 0.00 34.09 4.20
1082 1086 0.809241 GCGGCTCTCTGTGGATTCAG 60.809 60.000 0.00 0.00 36.85 3.02
1092 1096 4.148825 ATTTCCGCGCGGCTCTCT 62.149 61.111 42.78 22.04 34.68 3.10
1093 1097 3.929948 CATTTCCGCGCGGCTCTC 61.930 66.667 42.78 0.00 34.68 3.20
1094 1098 4.760047 ACATTTCCGCGCGGCTCT 62.760 61.111 42.78 25.72 34.68 4.09
1095 1099 4.223964 GACATTTCCGCGCGGCTC 62.224 66.667 42.78 25.31 34.68 4.70
1105 1109 2.202171 CGTGGCGCGTGACATTTC 60.202 61.111 8.27 0.00 33.95 2.17
1117 1121 2.585869 CGTCCATATCGTGCGTGGC 61.586 63.158 0.00 0.00 33.01 5.01
1123 1127 1.924335 CGTTGCCGTCCATATCGTG 59.076 57.895 0.00 0.00 0.00 4.35
1607 1623 2.202878 CCCGGCACATGTAGACGG 60.203 66.667 26.31 26.31 43.89 4.79
1611 1627 2.189521 GGGTCCCGGCACATGTAG 59.810 66.667 0.00 0.00 0.00 2.74
1665 1681 3.361977 CCCGGACGGTTGGCTTTG 61.362 66.667 0.73 0.00 0.00 2.77
1828 1844 1.004918 CCACCGTGTCCTCCTTGAC 60.005 63.158 0.00 0.00 35.77 3.18
2013 2029 1.032114 CCCCATTCCTGAAGAACGCC 61.032 60.000 0.00 0.00 37.29 5.68
2016 2032 1.636003 ACCTCCCCATTCCTGAAGAAC 59.364 52.381 0.00 0.00 37.29 3.01
2620 7468 2.364448 GAGGAGGAGGGGAAGCGT 60.364 66.667 0.00 0.00 0.00 5.07
2628 7476 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2629 7477 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2633 7481 2.015726 GGGAGGAGGAGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
2753 7629 1.896660 GGCGTGCTTGTTCCCTTGA 60.897 57.895 0.00 0.00 0.00 3.02
3196 8378 2.748058 AAAAGTCCATCGCCGTGCCT 62.748 55.000 0.00 0.00 0.00 4.75
3295 10639 2.050836 AATGTGCCACGTGGTGAGGA 62.051 55.000 33.92 15.23 35.23 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.