Multiple sequence alignment - TraesCS2A01G298900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G298900 chr2A 100.000 3138 0 0 1 3138 514763405 514766542 0.000000e+00 5795.0
1 TraesCS2A01G298900 chr2A 94.582 2067 94 8 328 2378 458970796 458968732 0.000000e+00 3181.0
2 TraesCS2A01G298900 chr2A 90.107 2517 124 44 328 2788 14783672 14786119 0.000000e+00 3153.0
3 TraesCS2A01G298900 chr2A 91.352 1642 93 33 1518 3138 38527718 38526105 0.000000e+00 2200.0
4 TraesCS2A01G298900 chr2A 90.196 51 4 1 1 51 260843600 260843551 7.260000e-07 65.8
5 TraesCS2A01G298900 chr7A 94.655 2844 91 13 328 3132 134461742 134464563 0.000000e+00 4353.0
6 TraesCS2A01G298900 chr7A 93.790 2818 115 16 328 3132 675422264 675425034 0.000000e+00 4180.0
7 TraesCS2A01G298900 chr7A 92.492 1665 77 19 1518 3138 164738085 164736425 0.000000e+00 2338.0
8 TraesCS2A01G298900 chr7A 94.982 558 21 2 2576 3132 255925391 255925942 0.000000e+00 869.0
9 TraesCS2A01G298900 chr3A 94.423 2833 121 15 328 3138 23143459 23140642 0.000000e+00 4322.0
10 TraesCS2A01G298900 chr3A 94.872 1638 55 8 1518 3138 64315915 64314290 0.000000e+00 2532.0
11 TraesCS2A01G298900 chr5A 93.004 2830 145 15 328 3132 562130740 562133541 0.000000e+00 4080.0
12 TraesCS2A01G298900 chr5A 96.055 1952 76 1 328 2278 633045659 633043708 0.000000e+00 3177.0
13 TraesCS2A01G298900 chr7D 92.141 2863 135 39 328 3132 11642240 11645070 0.000000e+00 3958.0
14 TraesCS2A01G298900 chr7D 94.110 2309 94 10 328 2612 530867450 530865160 0.000000e+00 3472.0
15 TraesCS2A01G298900 chr7D 94.336 1695 78 6 328 2008 592400979 592402669 0.000000e+00 2582.0
16 TraesCS2A01G298900 chr7D 94.051 1143 45 6 328 1457 498405595 498406727 0.000000e+00 1712.0
17 TraesCS2A01G298900 chr7D 92.157 51 3 1 1 51 46355576 46355527 1.560000e-08 71.3
18 TraesCS2A01G298900 chr2B 91.534 2835 151 33 328 3132 62334859 62337634 0.000000e+00 3823.0
19 TraesCS2A01G298900 chr2B 88.722 133 15 0 1 133 450764040 450764172 2.500000e-36 163.0
20 TraesCS2A01G298900 chr2B 95.050 101 5 0 158 258 450764161 450764261 3.240000e-35 159.0
21 TraesCS2A01G298900 chr2B 97.917 48 1 0 277 324 450764261 450764308 2.010000e-12 84.2
22 TraesCS2A01G298900 chr1B 89.842 2845 200 39 328 3132 591152718 591155513 0.000000e+00 3570.0
23 TraesCS2A01G298900 chr1B 90.230 1873 117 22 1306 3138 637633992 637632146 0.000000e+00 2385.0
24 TraesCS2A01G298900 chr4D 94.413 2309 97 8 328 2612 440465448 440463148 0.000000e+00 3520.0
25 TraesCS2A01G298900 chr4D 87.719 57 6 1 3 59 126505450 126505505 7.260000e-07 65.8
26 TraesCS2A01G298900 chr6A 94.312 2303 96 12 328 2612 508298187 508300472 0.000000e+00 3494.0
27 TraesCS2A01G298900 chr5D 94.601 1278 54 4 328 1592 443521260 443522535 0.000000e+00 1964.0
28 TraesCS2A01G298900 chr3B 91.994 1249 49 9 1935 3138 296181029 296179787 0.000000e+00 1705.0
29 TraesCS2A01G298900 chr3B 90.196 51 4 1 1 51 271286784 271286833 7.260000e-07 65.8
30 TraesCS2A01G298900 chr2D 94.767 172 4 2 158 324 379725485 379725656 2.400000e-66 263.0
31 TraesCS2A01G298900 chr2D 88.177 203 11 4 1286 1475 345269231 345269433 2.430000e-56 230.0
32 TraesCS2A01G298900 chr2D 93.233 133 9 0 1 133 379725364 379725496 2.470000e-46 196.0
33 TraesCS2A01G298900 chr1A 90.196 51 4 1 1 51 335997891 335997940 7.260000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G298900 chr2A 514763405 514766542 3137 False 5795 5795 100.000 1 3138 1 chr2A.!!$F2 3137
1 TraesCS2A01G298900 chr2A 458968732 458970796 2064 True 3181 3181 94.582 328 2378 1 chr2A.!!$R3 2050
2 TraesCS2A01G298900 chr2A 14783672 14786119 2447 False 3153 3153 90.107 328 2788 1 chr2A.!!$F1 2460
3 TraesCS2A01G298900 chr2A 38526105 38527718 1613 True 2200 2200 91.352 1518 3138 1 chr2A.!!$R1 1620
4 TraesCS2A01G298900 chr7A 134461742 134464563 2821 False 4353 4353 94.655 328 3132 1 chr7A.!!$F1 2804
5 TraesCS2A01G298900 chr7A 675422264 675425034 2770 False 4180 4180 93.790 328 3132 1 chr7A.!!$F3 2804
6 TraesCS2A01G298900 chr7A 164736425 164738085 1660 True 2338 2338 92.492 1518 3138 1 chr7A.!!$R1 1620
7 TraesCS2A01G298900 chr7A 255925391 255925942 551 False 869 869 94.982 2576 3132 1 chr7A.!!$F2 556
8 TraesCS2A01G298900 chr3A 23140642 23143459 2817 True 4322 4322 94.423 328 3138 1 chr3A.!!$R1 2810
9 TraesCS2A01G298900 chr3A 64314290 64315915 1625 True 2532 2532 94.872 1518 3138 1 chr3A.!!$R2 1620
10 TraesCS2A01G298900 chr5A 562130740 562133541 2801 False 4080 4080 93.004 328 3132 1 chr5A.!!$F1 2804
11 TraesCS2A01G298900 chr5A 633043708 633045659 1951 True 3177 3177 96.055 328 2278 1 chr5A.!!$R1 1950
12 TraesCS2A01G298900 chr7D 11642240 11645070 2830 False 3958 3958 92.141 328 3132 1 chr7D.!!$F1 2804
13 TraesCS2A01G298900 chr7D 530865160 530867450 2290 True 3472 3472 94.110 328 2612 1 chr7D.!!$R2 2284
14 TraesCS2A01G298900 chr7D 592400979 592402669 1690 False 2582 2582 94.336 328 2008 1 chr7D.!!$F3 1680
15 TraesCS2A01G298900 chr7D 498405595 498406727 1132 False 1712 1712 94.051 328 1457 1 chr7D.!!$F2 1129
16 TraesCS2A01G298900 chr2B 62334859 62337634 2775 False 3823 3823 91.534 328 3132 1 chr2B.!!$F1 2804
17 TraesCS2A01G298900 chr1B 591152718 591155513 2795 False 3570 3570 89.842 328 3132 1 chr1B.!!$F1 2804
18 TraesCS2A01G298900 chr1B 637632146 637633992 1846 True 2385 2385 90.230 1306 3138 1 chr1B.!!$R1 1832
19 TraesCS2A01G298900 chr4D 440463148 440465448 2300 True 3520 3520 94.413 328 2612 1 chr4D.!!$R1 2284
20 TraesCS2A01G298900 chr6A 508298187 508300472 2285 False 3494 3494 94.312 328 2612 1 chr6A.!!$F1 2284
21 TraesCS2A01G298900 chr5D 443521260 443522535 1275 False 1964 1964 94.601 328 1592 1 chr5D.!!$F1 1264
22 TraesCS2A01G298900 chr3B 296179787 296181029 1242 True 1705 1705 91.994 1935 3138 1 chr3B.!!$R1 1203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.033504 CCTGCAGTTACGAGTGGTGT 59.966 55.0 13.81 0.0 0.00 4.16 F
326 327 0.249322 ACGAGTGGTGTTTCCGTGAG 60.249 55.0 0.00 0.0 39.52 3.51 F
508 510 1.019278 CCGCAAATCAGTAGCCACGT 61.019 55.0 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 1990 2.297033 TGGCAAGCTTCATCTTTTCCAC 59.703 45.455 0.0 0.0 0.00 4.02 R
2060 2131 3.129813 GCATTGACCAGATCAGCAATCAA 59.870 43.478 0.0 0.0 38.99 2.57 R
2438 2512 2.504367 TGCTGCTTTCTACTTCCAACC 58.496 47.619 0.0 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.225963 GCTGTATGGCTGATTCTGATGC 59.774 50.000 0.00 0.00 0.00 3.91
22 23 3.473625 CTGTATGGCTGATTCTGATGCA 58.526 45.455 0.00 0.00 0.00 3.96
23 24 3.208594 TGTATGGCTGATTCTGATGCAC 58.791 45.455 0.00 0.00 0.00 4.57
24 25 2.730934 ATGGCTGATTCTGATGCACT 57.269 45.000 0.00 0.00 0.00 4.40
25 26 2.034104 TGGCTGATTCTGATGCACTC 57.966 50.000 0.00 0.00 0.00 3.51
26 27 1.279846 TGGCTGATTCTGATGCACTCA 59.720 47.619 0.00 0.00 0.00 3.41
27 28 2.290450 TGGCTGATTCTGATGCACTCAA 60.290 45.455 0.00 0.00 32.14 3.02
28 29 2.751259 GGCTGATTCTGATGCACTCAAA 59.249 45.455 0.00 0.00 32.14 2.69
29 30 3.181499 GGCTGATTCTGATGCACTCAAAG 60.181 47.826 0.00 0.00 32.14 2.77
30 31 3.439476 GCTGATTCTGATGCACTCAAAGT 59.561 43.478 0.00 0.00 32.14 2.66
32 33 3.754850 TGATTCTGATGCACTCAAAGTGG 59.245 43.478 9.01 0.00 46.01 4.00
37 38 3.770625 TGCACTCAAAGTGGAACGA 57.229 47.368 9.01 0.00 43.66 3.85
38 39 2.254546 TGCACTCAAAGTGGAACGAT 57.745 45.000 9.01 0.00 43.66 3.73
39 40 1.872952 TGCACTCAAAGTGGAACGATG 59.127 47.619 9.01 0.00 43.66 3.84
40 41 1.197721 GCACTCAAAGTGGAACGATGG 59.802 52.381 9.01 0.00 46.01 3.51
41 42 1.806542 CACTCAAAGTGGAACGATGGG 59.193 52.381 0.00 0.00 45.86 4.00
42 43 1.271379 ACTCAAAGTGGAACGATGGGG 60.271 52.381 0.00 0.00 45.86 4.96
43 44 1.003118 CTCAAAGTGGAACGATGGGGA 59.997 52.381 0.00 0.00 45.86 4.81
44 45 1.422024 TCAAAGTGGAACGATGGGGAA 59.578 47.619 0.00 0.00 45.86 3.97
45 46 2.041081 TCAAAGTGGAACGATGGGGAAT 59.959 45.455 0.00 0.00 45.86 3.01
46 47 3.264706 TCAAAGTGGAACGATGGGGAATA 59.735 43.478 0.00 0.00 45.86 1.75
47 48 4.013728 CAAAGTGGAACGATGGGGAATAA 58.986 43.478 0.00 0.00 45.86 1.40
48 49 4.519906 AAGTGGAACGATGGGGAATAAT 57.480 40.909 0.00 0.00 45.86 1.28
49 50 3.820557 AGTGGAACGATGGGGAATAATG 58.179 45.455 0.00 0.00 45.86 1.90
50 51 3.458118 AGTGGAACGATGGGGAATAATGA 59.542 43.478 0.00 0.00 45.86 2.57
51 52 3.564225 GTGGAACGATGGGGAATAATGAC 59.436 47.826 0.00 0.00 0.00 3.06
52 53 3.146847 GGAACGATGGGGAATAATGACC 58.853 50.000 0.00 0.00 0.00 4.02
53 54 2.951229 ACGATGGGGAATAATGACCC 57.049 50.000 0.00 0.00 44.94 4.46
54 55 2.418669 ACGATGGGGAATAATGACCCT 58.581 47.619 0.00 0.00 44.97 4.34
55 56 2.372172 ACGATGGGGAATAATGACCCTC 59.628 50.000 0.00 0.00 44.97 4.30
56 57 2.290323 CGATGGGGAATAATGACCCTCC 60.290 54.545 0.00 0.00 44.97 4.30
57 58 2.605825 TGGGGAATAATGACCCTCCT 57.394 50.000 0.00 0.00 44.97 3.69
58 59 2.871796 TGGGGAATAATGACCCTCCTT 58.128 47.619 0.00 0.00 44.97 3.36
59 60 3.206464 TGGGGAATAATGACCCTCCTTT 58.794 45.455 0.00 0.00 44.97 3.11
60 61 3.600617 TGGGGAATAATGACCCTCCTTTT 59.399 43.478 0.00 0.00 44.97 2.27
61 62 4.215908 GGGGAATAATGACCCTCCTTTTC 58.784 47.826 0.00 0.00 44.97 2.29
62 63 4.215908 GGGAATAATGACCCTCCTTTTCC 58.784 47.826 0.00 0.00 42.56 3.13
63 64 4.215908 GGAATAATGACCCTCCTTTTCCC 58.784 47.826 0.00 0.00 0.00 3.97
64 65 4.079154 GGAATAATGACCCTCCTTTTCCCT 60.079 45.833 0.00 0.00 0.00 4.20
65 66 5.519808 GAATAATGACCCTCCTTTTCCCTT 58.480 41.667 0.00 0.00 0.00 3.95
66 67 3.458044 AATGACCCTCCTTTTCCCTTC 57.542 47.619 0.00 0.00 0.00 3.46
67 68 1.073098 TGACCCTCCTTTTCCCTTCC 58.927 55.000 0.00 0.00 0.00 3.46
68 69 1.373536 GACCCTCCTTTTCCCTTCCT 58.626 55.000 0.00 0.00 0.00 3.36
69 70 1.282447 GACCCTCCTTTTCCCTTCCTC 59.718 57.143 0.00 0.00 0.00 3.71
70 71 1.132036 ACCCTCCTTTTCCCTTCCTCT 60.132 52.381 0.00 0.00 0.00 3.69
71 72 1.562008 CCCTCCTTTTCCCTTCCTCTC 59.438 57.143 0.00 0.00 0.00 3.20
72 73 1.562008 CCTCCTTTTCCCTTCCTCTCC 59.438 57.143 0.00 0.00 0.00 3.71
73 74 2.556766 CTCCTTTTCCCTTCCTCTCCT 58.443 52.381 0.00 0.00 0.00 3.69
74 75 3.569004 CCTCCTTTTCCCTTCCTCTCCTA 60.569 52.174 0.00 0.00 0.00 2.94
75 76 3.709141 CTCCTTTTCCCTTCCTCTCCTAG 59.291 52.174 0.00 0.00 0.00 3.02
76 77 3.079226 TCCTTTTCCCTTCCTCTCCTAGT 59.921 47.826 0.00 0.00 0.00 2.57
77 78 4.296852 TCCTTTTCCCTTCCTCTCCTAGTA 59.703 45.833 0.00 0.00 0.00 1.82
78 79 5.042523 TCCTTTTCCCTTCCTCTCCTAGTAT 60.043 44.000 0.00 0.00 0.00 2.12
79 80 5.668080 CCTTTTCCCTTCCTCTCCTAGTATT 59.332 44.000 0.00 0.00 0.00 1.89
80 81 6.183361 CCTTTTCCCTTCCTCTCCTAGTATTC 60.183 46.154 0.00 0.00 0.00 1.75
81 82 4.101645 TCCCTTCCTCTCCTAGTATTCG 57.898 50.000 0.00 0.00 0.00 3.34
82 83 2.559231 CCCTTCCTCTCCTAGTATTCGC 59.441 54.545 0.00 0.00 0.00 4.70
83 84 3.492337 CCTTCCTCTCCTAGTATTCGCT 58.508 50.000 0.00 0.00 0.00 4.93
84 85 3.254657 CCTTCCTCTCCTAGTATTCGCTG 59.745 52.174 0.00 0.00 0.00 5.18
85 86 2.231529 TCCTCTCCTAGTATTCGCTGC 58.768 52.381 0.00 0.00 0.00 5.25
86 87 1.957177 CCTCTCCTAGTATTCGCTGCA 59.043 52.381 0.00 0.00 0.00 4.41
87 88 2.030363 CCTCTCCTAGTATTCGCTGCAG 60.030 54.545 10.11 10.11 0.00 4.41
88 89 2.621055 CTCTCCTAGTATTCGCTGCAGT 59.379 50.000 16.64 0.00 0.00 4.40
89 90 2.619177 TCTCCTAGTATTCGCTGCAGTC 59.381 50.000 16.64 6.83 0.00 3.51
90 91 1.681793 TCCTAGTATTCGCTGCAGTCC 59.318 52.381 16.64 0.00 0.00 3.85
91 92 1.683917 CCTAGTATTCGCTGCAGTCCT 59.316 52.381 16.64 5.05 0.00 3.85
92 93 2.101582 CCTAGTATTCGCTGCAGTCCTT 59.898 50.000 16.64 1.09 0.00 3.36
93 94 3.318275 CCTAGTATTCGCTGCAGTCCTTA 59.682 47.826 16.64 0.08 0.00 2.69
94 95 4.021894 CCTAGTATTCGCTGCAGTCCTTAT 60.022 45.833 16.64 5.05 0.00 1.73
95 96 3.983741 AGTATTCGCTGCAGTCCTTATC 58.016 45.455 16.64 1.46 0.00 1.75
96 97 1.858091 ATTCGCTGCAGTCCTTATCG 58.142 50.000 16.64 8.45 0.00 2.92
97 98 0.530744 TTCGCTGCAGTCCTTATCGT 59.469 50.000 16.64 0.00 0.00 3.73
98 99 0.530744 TCGCTGCAGTCCTTATCGTT 59.469 50.000 16.64 0.00 0.00 3.85
99 100 1.067142 TCGCTGCAGTCCTTATCGTTT 60.067 47.619 16.64 0.00 0.00 3.60
100 101 2.164827 TCGCTGCAGTCCTTATCGTTTA 59.835 45.455 16.64 0.00 0.00 2.01
101 102 3.123804 CGCTGCAGTCCTTATCGTTTAT 58.876 45.455 16.64 0.00 0.00 1.40
102 103 3.060272 CGCTGCAGTCCTTATCGTTTATG 60.060 47.826 16.64 0.00 0.00 1.90
103 104 3.871594 GCTGCAGTCCTTATCGTTTATGT 59.128 43.478 16.64 0.00 0.00 2.29
104 105 4.332819 GCTGCAGTCCTTATCGTTTATGTT 59.667 41.667 16.64 0.00 0.00 2.71
105 106 5.727791 GCTGCAGTCCTTATCGTTTATGTTG 60.728 44.000 16.64 0.00 0.00 3.33
106 107 4.094294 TGCAGTCCTTATCGTTTATGTTGC 59.906 41.667 0.00 0.00 0.00 4.17
107 108 4.495844 GCAGTCCTTATCGTTTATGTTGCC 60.496 45.833 0.00 0.00 0.00 4.52
108 109 4.634004 CAGTCCTTATCGTTTATGTTGCCA 59.366 41.667 0.00 0.00 0.00 4.92
109 110 5.296780 CAGTCCTTATCGTTTATGTTGCCAT 59.703 40.000 0.00 0.00 34.97 4.40
110 111 6.481976 CAGTCCTTATCGTTTATGTTGCCATA 59.518 38.462 0.00 0.00 32.29 2.74
111 112 7.173218 CAGTCCTTATCGTTTATGTTGCCATAT 59.827 37.037 0.00 0.00 33.63 1.78
112 113 8.372459 AGTCCTTATCGTTTATGTTGCCATATA 58.628 33.333 0.00 0.00 33.63 0.86
113 114 8.656849 GTCCTTATCGTTTATGTTGCCATATAG 58.343 37.037 0.00 0.00 33.63 1.31
114 115 8.372459 TCCTTATCGTTTATGTTGCCATATAGT 58.628 33.333 0.00 0.00 33.63 2.12
115 116 8.999431 CCTTATCGTTTATGTTGCCATATAGTT 58.001 33.333 0.00 0.00 33.63 2.24
127 128 9.853555 TGTTGCCATATAGTTAATTTCAAGTTG 57.146 29.630 0.00 0.00 0.00 3.16
128 129 8.807581 GTTGCCATATAGTTAATTTCAAGTTGC 58.192 33.333 0.00 0.00 0.00 4.17
129 130 8.060931 TGCCATATAGTTAATTTCAAGTTGCA 57.939 30.769 0.00 0.00 0.00 4.08
130 131 8.526978 TGCCATATAGTTAATTTCAAGTTGCAA 58.473 29.630 0.00 0.00 0.00 4.08
131 132 8.807581 GCCATATAGTTAATTTCAAGTTGCAAC 58.192 33.333 22.17 22.17 0.00 4.17
132 133 9.853555 CCATATAGTTAATTTCAAGTTGCAACA 57.146 29.630 30.11 10.66 0.00 3.33
136 137 9.762933 ATAGTTAATTTCAAGTTGCAACACATT 57.237 25.926 30.11 19.94 0.00 2.71
137 138 8.130307 AGTTAATTTCAAGTTGCAACACATTC 57.870 30.769 30.11 3.19 0.00 2.67
138 139 5.640218 AATTTCAAGTTGCAACACATTCG 57.360 34.783 30.11 11.98 0.00 3.34
139 140 2.118228 TCAAGTTGCAACACATTCGC 57.882 45.000 30.11 1.60 0.00 4.70
140 141 1.403323 TCAAGTTGCAACACATTCGCA 59.597 42.857 30.11 3.42 0.00 5.10
141 142 2.159324 TCAAGTTGCAACACATTCGCAA 60.159 40.909 30.11 3.49 43.02 4.85
142 143 2.796031 CAAGTTGCAACACATTCGCAAT 59.204 40.909 30.11 3.54 46.39 3.56
143 144 3.096489 AGTTGCAACACATTCGCAATT 57.904 38.095 30.11 3.00 46.39 2.32
144 145 3.456280 AGTTGCAACACATTCGCAATTT 58.544 36.364 30.11 2.79 46.39 1.82
145 146 3.245754 AGTTGCAACACATTCGCAATTTG 59.754 39.130 30.11 0.00 46.39 2.32
146 147 2.819115 TGCAACACATTCGCAATTTGT 58.181 38.095 0.00 0.00 33.46 2.83
147 148 3.193263 TGCAACACATTCGCAATTTGTT 58.807 36.364 0.00 7.26 41.16 2.83
148 149 4.363138 TGCAACACATTCGCAATTTGTTA 58.637 34.783 10.81 0.00 39.14 2.41
149 150 4.805719 TGCAACACATTCGCAATTTGTTAA 59.194 33.333 10.81 0.00 39.14 2.01
150 151 5.291858 TGCAACACATTCGCAATTTGTTAAA 59.708 32.000 10.81 3.66 39.14 1.52
151 152 6.183360 TGCAACACATTCGCAATTTGTTAAAA 60.183 30.769 10.81 2.03 39.14 1.52
152 153 6.684555 GCAACACATTCGCAATTTGTTAAAAA 59.315 30.769 10.81 0.00 39.14 1.94
178 179 9.757227 AAAAACAAGTTGCAACAGCTATATAAA 57.243 25.926 30.11 0.00 0.00 1.40
179 180 9.927668 AAAACAAGTTGCAACAGCTATATAAAT 57.072 25.926 30.11 3.00 0.00 1.40
203 204 9.461312 AATAAATCTATACCAAGTTGCAGTTGA 57.539 29.630 11.45 0.00 30.18 3.18
204 205 7.944729 AAATCTATACCAAGTTGCAGTTGAT 57.055 32.000 11.45 0.00 30.18 2.57
205 206 7.944729 AATCTATACCAAGTTGCAGTTGATT 57.055 32.000 11.45 2.22 30.18 2.57
206 207 6.741992 TCTATACCAAGTTGCAGTTGATTG 57.258 37.500 11.45 2.83 30.18 2.67
207 208 6.237901 TCTATACCAAGTTGCAGTTGATTGT 58.762 36.000 11.45 5.01 30.18 2.71
208 209 3.715628 ACCAAGTTGCAGTTGATTGTC 57.284 42.857 11.45 0.00 30.18 3.18
209 210 2.362077 ACCAAGTTGCAGTTGATTGTCC 59.638 45.455 11.45 0.00 30.18 4.02
210 211 2.624838 CCAAGTTGCAGTTGATTGTCCT 59.375 45.455 11.45 0.00 30.18 3.85
211 212 3.068590 CCAAGTTGCAGTTGATTGTCCTT 59.931 43.478 11.45 0.00 30.18 3.36
212 213 3.996150 AGTTGCAGTTGATTGTCCTTG 57.004 42.857 0.00 0.00 0.00 3.61
213 214 2.624838 AGTTGCAGTTGATTGTCCTTGG 59.375 45.455 0.00 0.00 0.00 3.61
214 215 2.622942 GTTGCAGTTGATTGTCCTTGGA 59.377 45.455 0.00 0.00 0.00 3.53
215 216 3.159213 TGCAGTTGATTGTCCTTGGAT 57.841 42.857 0.00 0.00 0.00 3.41
216 217 3.084039 TGCAGTTGATTGTCCTTGGATC 58.916 45.455 0.00 0.00 0.00 3.36
217 218 3.245016 TGCAGTTGATTGTCCTTGGATCT 60.245 43.478 0.00 0.00 0.00 2.75
218 219 3.128242 GCAGTTGATTGTCCTTGGATCTG 59.872 47.826 0.00 0.00 0.00 2.90
219 220 4.330250 CAGTTGATTGTCCTTGGATCTGT 58.670 43.478 0.00 0.00 0.00 3.41
220 221 4.394300 CAGTTGATTGTCCTTGGATCTGTC 59.606 45.833 0.00 0.00 0.00 3.51
221 222 3.634397 TGATTGTCCTTGGATCTGTCC 57.366 47.619 0.00 0.00 45.31 4.02
234 235 5.796424 GGATCTGTCCATGCCAAAATATT 57.204 39.130 0.00 0.00 44.42 1.28
235 236 6.165700 GGATCTGTCCATGCCAAAATATTT 57.834 37.500 0.00 0.00 44.42 1.40
236 237 5.987347 GGATCTGTCCATGCCAAAATATTTG 59.013 40.000 0.39 0.00 44.42 2.32
237 238 4.757594 TCTGTCCATGCCAAAATATTTGC 58.242 39.130 0.39 2.55 0.00 3.68
238 239 3.519579 TGTCCATGCCAAAATATTTGCG 58.480 40.909 0.39 0.00 30.04 4.85
239 240 2.865551 GTCCATGCCAAAATATTTGCGG 59.134 45.455 0.39 6.97 30.04 5.69
240 241 1.598601 CCATGCCAAAATATTTGCGGC 59.401 47.619 25.00 25.00 39.03 6.53
241 242 1.258458 CATGCCAAAATATTTGCGGCG 59.742 47.619 25.52 0.51 40.54 6.46
242 243 1.080995 TGCCAAAATATTTGCGGCGC 61.081 50.000 27.44 27.44 40.54 6.53
243 244 1.080995 GCCAAAATATTTGCGGCGCA 61.081 50.000 33.07 33.07 36.47 6.09
244 245 0.922717 CCAAAATATTTGCGGCGCAG 59.077 50.000 34.19 19.69 40.61 5.18
245 246 1.627879 CAAAATATTTGCGGCGCAGT 58.372 45.000 34.19 27.32 40.61 4.40
246 247 1.991965 CAAAATATTTGCGGCGCAGTT 59.008 42.857 34.19 26.13 40.61 3.16
247 248 2.362169 AAATATTTGCGGCGCAGTTT 57.638 40.000 34.19 26.71 40.61 2.66
248 249 1.908065 AATATTTGCGGCGCAGTTTC 58.092 45.000 34.19 3.50 40.61 2.78
249 250 0.808125 ATATTTGCGGCGCAGTTTCA 59.192 45.000 34.19 17.44 40.61 2.69
250 251 0.109964 TATTTGCGGCGCAGTTTCAC 60.110 50.000 34.19 1.82 40.61 3.18
251 252 3.688109 TATTTGCGGCGCAGTTTCACG 62.688 52.381 34.19 2.00 40.61 4.35
253 254 3.788766 GCGGCGCAGTTTCACGAT 61.789 61.111 29.21 0.00 0.00 3.73
254 255 2.395690 CGGCGCAGTTTCACGATC 59.604 61.111 10.83 0.00 0.00 3.69
255 256 2.785258 GGCGCAGTTTCACGATCC 59.215 61.111 10.83 0.00 0.00 3.36
256 257 2.395690 GCGCAGTTTCACGATCCG 59.604 61.111 0.30 0.00 0.00 4.18
257 258 2.380410 GCGCAGTTTCACGATCCGT 61.380 57.895 0.30 0.00 42.36 4.69
258 259 1.702299 CGCAGTTTCACGATCCGTC 59.298 57.895 0.00 0.00 38.32 4.79
269 270 1.694639 CGATCCGTCGGGCTAATAAC 58.305 55.000 12.29 0.00 44.00 1.89
270 271 1.001048 CGATCCGTCGGGCTAATAACA 60.001 52.381 12.29 0.00 44.00 2.41
271 272 2.352421 CGATCCGTCGGGCTAATAACAT 60.352 50.000 12.29 0.00 44.00 2.71
272 273 3.660865 GATCCGTCGGGCTAATAACATT 58.339 45.455 12.29 0.00 0.00 2.71
273 274 3.102052 TCCGTCGGGCTAATAACATTC 57.898 47.619 12.29 0.00 0.00 2.67
274 275 2.431419 TCCGTCGGGCTAATAACATTCA 59.569 45.455 12.29 0.00 0.00 2.57
275 276 3.118702 TCCGTCGGGCTAATAACATTCAA 60.119 43.478 12.29 0.00 0.00 2.69
276 277 3.813166 CCGTCGGGCTAATAACATTCAAT 59.187 43.478 2.34 0.00 0.00 2.57
277 278 4.992319 CCGTCGGGCTAATAACATTCAATA 59.008 41.667 2.34 0.00 0.00 1.90
278 279 5.467399 CCGTCGGGCTAATAACATTCAATAA 59.533 40.000 2.34 0.00 0.00 1.40
279 280 6.360329 CGTCGGGCTAATAACATTCAATAAC 58.640 40.000 0.00 0.00 0.00 1.89
280 281 6.018588 CGTCGGGCTAATAACATTCAATAACA 60.019 38.462 0.00 0.00 0.00 2.41
281 282 7.307751 CGTCGGGCTAATAACATTCAATAACAT 60.308 37.037 0.00 0.00 0.00 2.71
282 283 8.995220 GTCGGGCTAATAACATTCAATAACATA 58.005 33.333 0.00 0.00 0.00 2.29
283 284 9.733556 TCGGGCTAATAACATTCAATAACATAT 57.266 29.630 0.00 0.00 0.00 1.78
284 285 9.988350 CGGGCTAATAACATTCAATAACATATC 57.012 33.333 0.00 0.00 0.00 1.63
292 293 7.502120 ACATTCAATAACATATCCAGAGTGC 57.498 36.000 0.00 0.00 0.00 4.40
293 294 7.056006 ACATTCAATAACATATCCAGAGTGCA 58.944 34.615 0.00 0.00 0.00 4.57
294 295 6.925610 TTCAATAACATATCCAGAGTGCAC 57.074 37.500 9.40 9.40 0.00 4.57
295 296 6.239217 TCAATAACATATCCAGAGTGCACT 57.761 37.500 21.88 21.88 0.00 4.40
296 297 6.653020 TCAATAACATATCCAGAGTGCACTT 58.347 36.000 22.65 7.05 0.00 3.16
297 298 7.112122 TCAATAACATATCCAGAGTGCACTTT 58.888 34.615 22.65 13.35 0.00 2.66
298 299 7.280876 TCAATAACATATCCAGAGTGCACTTTC 59.719 37.037 22.65 9.60 0.00 2.62
299 300 3.878778 ACATATCCAGAGTGCACTTTCC 58.121 45.455 22.65 8.50 0.00 3.13
300 301 3.521126 ACATATCCAGAGTGCACTTTCCT 59.479 43.478 22.65 10.98 0.00 3.36
301 302 2.486472 ATCCAGAGTGCACTTTCCTG 57.514 50.000 22.65 21.90 0.00 3.86
302 303 0.250467 TCCAGAGTGCACTTTCCTGC 60.250 55.000 22.65 6.86 37.70 4.85
303 304 0.535780 CCAGAGTGCACTTTCCTGCA 60.536 55.000 22.65 0.00 45.06 4.41
306 307 3.502164 AGTGCACTTTCCTGCAGTT 57.498 47.368 15.25 0.00 46.66 3.16
307 308 2.638480 AGTGCACTTTCCTGCAGTTA 57.362 45.000 15.25 0.00 46.66 2.24
308 309 2.222027 AGTGCACTTTCCTGCAGTTAC 58.778 47.619 15.25 0.00 46.66 2.50
309 310 1.225855 TGCACTTTCCTGCAGTTACG 58.774 50.000 13.81 0.00 42.36 3.18
310 311 1.202592 TGCACTTTCCTGCAGTTACGA 60.203 47.619 13.81 0.00 42.36 3.43
311 312 1.461127 GCACTTTCCTGCAGTTACGAG 59.539 52.381 13.81 5.70 37.11 4.18
312 313 2.755650 CACTTTCCTGCAGTTACGAGT 58.244 47.619 13.81 6.33 0.00 4.18
313 314 2.476619 CACTTTCCTGCAGTTACGAGTG 59.523 50.000 13.81 14.15 0.00 3.51
314 315 2.069273 CTTTCCTGCAGTTACGAGTGG 58.931 52.381 13.81 0.00 0.00 4.00
315 316 1.045407 TTCCTGCAGTTACGAGTGGT 58.955 50.000 13.81 0.00 0.00 4.16
316 317 0.317160 TCCTGCAGTTACGAGTGGTG 59.683 55.000 13.81 0.00 0.00 4.17
317 318 0.033504 CCTGCAGTTACGAGTGGTGT 59.966 55.000 13.81 0.00 0.00 4.16
318 319 1.540363 CCTGCAGTTACGAGTGGTGTT 60.540 52.381 13.81 0.00 0.00 3.32
319 320 2.210116 CTGCAGTTACGAGTGGTGTTT 58.790 47.619 5.25 0.00 0.00 2.83
320 321 2.206750 TGCAGTTACGAGTGGTGTTTC 58.793 47.619 0.00 0.00 0.00 2.78
321 322 1.529865 GCAGTTACGAGTGGTGTTTCC 59.470 52.381 0.00 0.00 0.00 3.13
322 323 1.790623 CAGTTACGAGTGGTGTTTCCG 59.209 52.381 0.00 0.00 39.52 4.30
323 324 1.410153 AGTTACGAGTGGTGTTTCCGT 59.590 47.619 0.00 0.00 39.52 4.69
324 325 1.523934 GTTACGAGTGGTGTTTCCGTG 59.476 52.381 0.00 0.00 39.52 4.94
325 326 1.031235 TACGAGTGGTGTTTCCGTGA 58.969 50.000 0.00 0.00 39.52 4.35
326 327 0.249322 ACGAGTGGTGTTTCCGTGAG 60.249 55.000 0.00 0.00 39.52 3.51
508 510 1.019278 CCGCAAATCAGTAGCCACGT 61.019 55.000 0.00 0.00 0.00 4.49
705 716 3.896133 GCCTATCACCGTCGCCGA 61.896 66.667 0.00 0.00 35.63 5.54
803 815 1.672881 GGTTTCAATGGATCCTCAGCG 59.327 52.381 14.23 0.00 0.00 5.18
1085 1103 2.619013 AATCTTGCACGCTAACTTGC 57.381 45.000 0.00 0.00 41.26 4.01
1104 1122 2.229543 TGCTTTGTTGATGGAGATGTGC 59.770 45.455 0.00 0.00 0.00 4.57
1211 1263 6.017400 ACTGAAACTTGAAAGTGCCATATG 57.983 37.500 0.00 0.00 39.66 1.78
1919 1990 7.282675 AGGATCAAGCAAAGATTGAGATAAGTG 59.717 37.037 4.02 0.00 41.21 3.16
1945 2016 2.592102 AGATGAAGCTTGCCAAGGAA 57.408 45.000 2.10 0.00 0.00 3.36
1962 2033 2.554032 AGGAACAAAGGTGCATTCTTCG 59.446 45.455 5.86 0.00 0.00 3.79
1966 2037 3.214328 ACAAAGGTGCATTCTTCGAAGT 58.786 40.909 23.85 3.62 0.00 3.01
2060 2131 6.405538 CAAGAGAAGAAGAAGCTGGAGTATT 58.594 40.000 0.00 0.00 0.00 1.89
2166 2238 6.016108 GCTTGGTGTGTGGGTTAAGTAATTAA 60.016 38.462 0.00 0.00 0.00 1.40
2438 2512 5.807520 GTGGATAACTGACAGTAGTGACATG 59.192 44.000 8.91 0.00 0.00 3.21
2497 2592 6.695278 GCAAGTAGCTTAGATAGTCTGACAAG 59.305 42.308 10.88 5.60 41.15 3.16
3016 3242 1.478105 TGGTCCTCATCATCGTCACTG 59.522 52.381 0.00 0.00 0.00 3.66
3017 3243 1.202463 GGTCCTCATCATCGTCACTGG 60.202 57.143 0.00 0.00 0.00 4.00
3018 3244 1.751351 GTCCTCATCATCGTCACTGGA 59.249 52.381 0.00 0.00 0.00 3.86
3019 3245 1.751351 TCCTCATCATCGTCACTGGAC 59.249 52.381 0.00 0.00 40.77 4.02
3020 3246 1.753649 CCTCATCATCGTCACTGGACT 59.246 52.381 0.00 0.00 42.05 3.85
3021 3247 2.223688 CCTCATCATCGTCACTGGACTC 60.224 54.545 0.00 0.00 42.05 3.36
3022 3248 1.401905 TCATCATCGTCACTGGACTCG 59.598 52.381 0.00 0.00 42.05 4.18
3023 3249 1.133216 CATCATCGTCACTGGACTCGT 59.867 52.381 0.00 0.00 42.05 4.18
3024 3250 0.803117 TCATCGTCACTGGACTCGTC 59.197 55.000 0.00 0.00 42.05 4.20
3025 3251 0.521735 CATCGTCACTGGACTCGTCA 59.478 55.000 0.00 0.00 42.05 4.35
3026 3252 1.133216 CATCGTCACTGGACTCGTCAT 59.867 52.381 0.00 0.00 42.05 3.06
3027 3253 0.803117 TCGTCACTGGACTCGTCATC 59.197 55.000 0.00 0.00 42.05 2.92
3028 3254 0.521735 CGTCACTGGACTCGTCATCA 59.478 55.000 0.00 0.00 42.05 3.07
3029 3255 1.466529 CGTCACTGGACTCGTCATCAG 60.467 57.143 0.00 1.28 42.05 2.90
3030 3256 1.813178 GTCACTGGACTCGTCATCAGA 59.187 52.381 9.36 0.00 40.99 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.225963 GCATCAGAATCAGCCATACAGC 59.774 50.000 0.00 0.00 0.00 4.40
1 2 3.250280 GTGCATCAGAATCAGCCATACAG 59.750 47.826 0.00 0.00 0.00 2.74
4 5 3.135167 TGAGTGCATCAGAATCAGCCATA 59.865 43.478 0.00 0.00 32.77 2.74
5 6 2.092592 TGAGTGCATCAGAATCAGCCAT 60.093 45.455 0.00 0.00 32.77 4.40
6 7 1.279846 TGAGTGCATCAGAATCAGCCA 59.720 47.619 0.00 0.00 32.77 4.75
7 8 2.034104 TGAGTGCATCAGAATCAGCC 57.966 50.000 0.00 0.00 32.77 4.85
8 9 3.439476 ACTTTGAGTGCATCAGAATCAGC 59.561 43.478 0.00 0.00 39.68 4.26
9 10 4.142665 CCACTTTGAGTGCATCAGAATCAG 60.143 45.833 2.59 0.00 44.63 2.90
10 11 3.754850 CCACTTTGAGTGCATCAGAATCA 59.245 43.478 2.59 0.00 44.63 2.57
11 12 4.005650 TCCACTTTGAGTGCATCAGAATC 58.994 43.478 2.59 0.00 44.63 2.52
12 13 4.025040 TCCACTTTGAGTGCATCAGAAT 57.975 40.909 2.59 0.00 44.63 2.40
13 14 3.490439 TCCACTTTGAGTGCATCAGAA 57.510 42.857 2.59 0.00 44.63 3.02
14 15 3.141398 GTTCCACTTTGAGTGCATCAGA 58.859 45.455 2.59 0.00 44.63 3.27
15 16 2.096069 CGTTCCACTTTGAGTGCATCAG 60.096 50.000 2.59 0.00 44.63 2.90
16 17 1.872952 CGTTCCACTTTGAGTGCATCA 59.127 47.619 2.59 0.00 44.63 3.07
17 18 2.143122 TCGTTCCACTTTGAGTGCATC 58.857 47.619 2.59 0.00 44.63 3.91
18 19 2.254546 TCGTTCCACTTTGAGTGCAT 57.745 45.000 2.59 0.00 44.63 3.96
19 20 1.872952 CATCGTTCCACTTTGAGTGCA 59.127 47.619 2.59 0.00 44.63 4.57
20 21 1.197721 CCATCGTTCCACTTTGAGTGC 59.802 52.381 2.59 0.00 44.63 4.40
21 22 1.806542 CCCATCGTTCCACTTTGAGTG 59.193 52.381 1.14 1.14 45.53 3.51
22 23 1.271379 CCCCATCGTTCCACTTTGAGT 60.271 52.381 0.00 0.00 0.00 3.41
23 24 1.003118 TCCCCATCGTTCCACTTTGAG 59.997 52.381 0.00 0.00 0.00 3.02
24 25 1.060729 TCCCCATCGTTCCACTTTGA 58.939 50.000 0.00 0.00 0.00 2.69
25 26 1.904287 TTCCCCATCGTTCCACTTTG 58.096 50.000 0.00 0.00 0.00 2.77
26 27 2.899303 ATTCCCCATCGTTCCACTTT 57.101 45.000 0.00 0.00 0.00 2.66
27 28 4.080015 TCATTATTCCCCATCGTTCCACTT 60.080 41.667 0.00 0.00 0.00 3.16
28 29 3.458118 TCATTATTCCCCATCGTTCCACT 59.542 43.478 0.00 0.00 0.00 4.00
29 30 3.564225 GTCATTATTCCCCATCGTTCCAC 59.436 47.826 0.00 0.00 0.00 4.02
30 31 3.434453 GGTCATTATTCCCCATCGTTCCA 60.434 47.826 0.00 0.00 0.00 3.53
31 32 3.146847 GGTCATTATTCCCCATCGTTCC 58.853 50.000 0.00 0.00 0.00 3.62
32 33 3.146847 GGGTCATTATTCCCCATCGTTC 58.853 50.000 0.00 0.00 38.37 3.95
33 34 2.783510 AGGGTCATTATTCCCCATCGTT 59.216 45.455 0.00 0.00 44.40 3.85
34 35 2.372172 GAGGGTCATTATTCCCCATCGT 59.628 50.000 0.00 0.00 44.40 3.73
35 36 2.290323 GGAGGGTCATTATTCCCCATCG 60.290 54.545 0.00 0.00 44.40 3.84
36 37 2.989571 AGGAGGGTCATTATTCCCCATC 59.010 50.000 0.00 0.00 44.40 3.51
37 38 3.095299 AGGAGGGTCATTATTCCCCAT 57.905 47.619 0.00 0.00 44.40 4.00
38 39 2.605825 AGGAGGGTCATTATTCCCCA 57.394 50.000 0.00 0.00 44.40 4.96
39 40 3.973472 AAAGGAGGGTCATTATTCCCC 57.027 47.619 0.00 0.00 44.40 4.81
40 41 4.215908 GGAAAAGGAGGGTCATTATTCCC 58.784 47.826 0.00 0.00 43.71 3.97
41 42 4.079154 AGGGAAAAGGAGGGTCATTATTCC 60.079 45.833 0.00 0.00 32.22 3.01
42 43 5.130705 AGGGAAAAGGAGGGTCATTATTC 57.869 43.478 0.00 0.00 0.00 1.75
43 44 5.519808 GAAGGGAAAAGGAGGGTCATTATT 58.480 41.667 0.00 0.00 0.00 1.40
44 45 4.079154 GGAAGGGAAAAGGAGGGTCATTAT 60.079 45.833 0.00 0.00 0.00 1.28
45 46 3.268595 GGAAGGGAAAAGGAGGGTCATTA 59.731 47.826 0.00 0.00 0.00 1.90
46 47 2.043115 GGAAGGGAAAAGGAGGGTCATT 59.957 50.000 0.00 0.00 0.00 2.57
47 48 1.641192 GGAAGGGAAAAGGAGGGTCAT 59.359 52.381 0.00 0.00 0.00 3.06
48 49 1.073098 GGAAGGGAAAAGGAGGGTCA 58.927 55.000 0.00 0.00 0.00 4.02
49 50 1.282447 GAGGAAGGGAAAAGGAGGGTC 59.718 57.143 0.00 0.00 0.00 4.46
50 51 1.132036 AGAGGAAGGGAAAAGGAGGGT 60.132 52.381 0.00 0.00 0.00 4.34
51 52 1.562008 GAGAGGAAGGGAAAAGGAGGG 59.438 57.143 0.00 0.00 0.00 4.30
52 53 1.562008 GGAGAGGAAGGGAAAAGGAGG 59.438 57.143 0.00 0.00 0.00 4.30
53 54 2.556766 AGGAGAGGAAGGGAAAAGGAG 58.443 52.381 0.00 0.00 0.00 3.69
54 55 2.743131 AGGAGAGGAAGGGAAAAGGA 57.257 50.000 0.00 0.00 0.00 3.36
55 56 3.455849 ACTAGGAGAGGAAGGGAAAAGG 58.544 50.000 0.00 0.00 0.00 3.11
56 57 6.461788 CGAATACTAGGAGAGGAAGGGAAAAG 60.462 46.154 0.00 0.00 0.00 2.27
57 58 5.363005 CGAATACTAGGAGAGGAAGGGAAAA 59.637 44.000 0.00 0.00 0.00 2.29
58 59 4.894114 CGAATACTAGGAGAGGAAGGGAAA 59.106 45.833 0.00 0.00 0.00 3.13
59 60 4.471548 CGAATACTAGGAGAGGAAGGGAA 58.528 47.826 0.00 0.00 0.00 3.97
60 61 3.751245 GCGAATACTAGGAGAGGAAGGGA 60.751 52.174 0.00 0.00 0.00 4.20
61 62 2.559231 GCGAATACTAGGAGAGGAAGGG 59.441 54.545 0.00 0.00 0.00 3.95
62 63 3.254657 CAGCGAATACTAGGAGAGGAAGG 59.745 52.174 0.00 0.00 0.00 3.46
63 64 3.305064 GCAGCGAATACTAGGAGAGGAAG 60.305 52.174 0.00 0.00 0.00 3.46
64 65 2.623889 GCAGCGAATACTAGGAGAGGAA 59.376 50.000 0.00 0.00 0.00 3.36
65 66 2.231529 GCAGCGAATACTAGGAGAGGA 58.768 52.381 0.00 0.00 0.00 3.71
66 67 1.957177 TGCAGCGAATACTAGGAGAGG 59.043 52.381 0.00 0.00 0.00 3.69
67 68 2.621055 ACTGCAGCGAATACTAGGAGAG 59.379 50.000 15.27 0.00 0.00 3.20
68 69 2.619177 GACTGCAGCGAATACTAGGAGA 59.381 50.000 15.27 0.00 0.00 3.71
69 70 2.287909 GGACTGCAGCGAATACTAGGAG 60.288 54.545 15.27 0.00 0.00 3.69
70 71 1.681793 GGACTGCAGCGAATACTAGGA 59.318 52.381 15.27 0.00 0.00 2.94
71 72 1.683917 AGGACTGCAGCGAATACTAGG 59.316 52.381 15.27 0.00 0.00 3.02
72 73 3.444703 AAGGACTGCAGCGAATACTAG 57.555 47.619 15.27 0.00 0.00 2.57
73 74 4.320275 CGATAAGGACTGCAGCGAATACTA 60.320 45.833 15.27 0.00 0.00 1.82
74 75 3.551046 CGATAAGGACTGCAGCGAATACT 60.551 47.826 15.27 0.00 0.00 2.12
75 76 2.726760 CGATAAGGACTGCAGCGAATAC 59.273 50.000 15.27 0.00 0.00 1.89
76 77 2.361119 ACGATAAGGACTGCAGCGAATA 59.639 45.455 15.27 2.86 0.00 1.75
77 78 1.137086 ACGATAAGGACTGCAGCGAAT 59.863 47.619 15.27 0.08 0.00 3.34
78 79 0.530744 ACGATAAGGACTGCAGCGAA 59.469 50.000 15.27 0.00 0.00 4.70
79 80 0.530744 AACGATAAGGACTGCAGCGA 59.469 50.000 15.27 0.00 0.00 4.93
80 81 1.359848 AAACGATAAGGACTGCAGCG 58.640 50.000 15.27 9.92 0.00 5.18
81 82 3.871594 ACATAAACGATAAGGACTGCAGC 59.128 43.478 15.27 6.61 0.00 5.25
82 83 5.727791 GCAACATAAACGATAAGGACTGCAG 60.728 44.000 13.48 13.48 0.00 4.41
83 84 4.094294 GCAACATAAACGATAAGGACTGCA 59.906 41.667 0.00 0.00 0.00 4.41
84 85 4.495844 GGCAACATAAACGATAAGGACTGC 60.496 45.833 0.00 0.00 0.00 4.40
85 86 4.634004 TGGCAACATAAACGATAAGGACTG 59.366 41.667 0.00 0.00 46.17 3.51
86 87 4.839121 TGGCAACATAAACGATAAGGACT 58.161 39.130 0.00 0.00 46.17 3.85
102 103 8.807581 GCAACTTGAAATTAACTATATGGCAAC 58.192 33.333 0.00 0.00 0.00 4.17
103 104 8.526978 TGCAACTTGAAATTAACTATATGGCAA 58.473 29.630 0.00 0.00 0.00 4.52
104 105 8.060931 TGCAACTTGAAATTAACTATATGGCA 57.939 30.769 0.00 0.00 0.00 4.92
105 106 8.807581 GTTGCAACTTGAAATTAACTATATGGC 58.192 33.333 22.36 0.00 0.00 4.40
106 107 9.853555 TGTTGCAACTTGAAATTAACTATATGG 57.146 29.630 28.61 0.00 0.00 2.74
110 111 9.762933 AATGTGTTGCAACTTGAAATTAACTAT 57.237 25.926 28.61 9.58 0.00 2.12
111 112 9.243637 GAATGTGTTGCAACTTGAAATTAACTA 57.756 29.630 28.61 2.21 0.00 2.24
112 113 7.043458 CGAATGTGTTGCAACTTGAAATTAACT 60.043 33.333 28.61 2.23 0.00 2.24
113 114 7.056800 CGAATGTGTTGCAACTTGAAATTAAC 58.943 34.615 28.61 15.89 0.00 2.01
114 115 6.292061 GCGAATGTGTTGCAACTTGAAATTAA 60.292 34.615 28.61 3.73 0.00 1.40
115 116 5.174761 GCGAATGTGTTGCAACTTGAAATTA 59.825 36.000 28.61 4.49 0.00 1.40
116 117 4.025813 GCGAATGTGTTGCAACTTGAAATT 60.026 37.500 28.61 15.90 0.00 1.82
117 118 3.490526 GCGAATGTGTTGCAACTTGAAAT 59.509 39.130 28.61 8.12 0.00 2.17
118 119 2.857152 GCGAATGTGTTGCAACTTGAAA 59.143 40.909 28.61 6.80 0.00 2.69
119 120 2.159324 TGCGAATGTGTTGCAACTTGAA 60.159 40.909 28.61 12.82 35.33 2.69
120 121 1.403323 TGCGAATGTGTTGCAACTTGA 59.597 42.857 28.61 13.68 35.33 3.02
121 122 1.837648 TGCGAATGTGTTGCAACTTG 58.162 45.000 28.61 14.19 35.33 3.16
122 123 2.575694 TTGCGAATGTGTTGCAACTT 57.424 40.000 28.61 15.92 43.13 2.66
125 126 3.620374 AACAAATTGCGAATGTGTTGCAA 59.380 34.783 13.36 0.00 45.30 4.08
126 127 2.819115 ACAAATTGCGAATGTGTTGCA 58.181 38.095 0.00 0.00 35.85 4.08
127 128 3.857923 AACAAATTGCGAATGTGTTGC 57.142 38.095 13.36 0.00 45.30 4.17
152 153 9.757227 TTTATATAGCTGTTGCAACTTGTTTTT 57.243 25.926 28.61 12.42 42.74 1.94
153 154 9.927668 ATTTATATAGCTGTTGCAACTTGTTTT 57.072 25.926 28.61 16.29 42.74 2.43
177 178 9.461312 TCAACTGCAACTTGGTATAGATTTATT 57.539 29.630 4.38 0.00 0.00 1.40
178 179 9.632638 ATCAACTGCAACTTGGTATAGATTTAT 57.367 29.630 4.38 0.00 0.00 1.40
179 180 9.461312 AATCAACTGCAACTTGGTATAGATTTA 57.539 29.630 4.38 0.00 0.00 1.40
180 181 7.944729 ATCAACTGCAACTTGGTATAGATTT 57.055 32.000 4.38 0.00 0.00 2.17
181 182 7.394359 ACAATCAACTGCAACTTGGTATAGATT 59.606 33.333 4.38 0.00 0.00 2.40
182 183 6.886459 ACAATCAACTGCAACTTGGTATAGAT 59.114 34.615 4.38 0.00 0.00 1.98
183 184 6.237901 ACAATCAACTGCAACTTGGTATAGA 58.762 36.000 4.38 0.00 0.00 1.98
184 185 6.403636 GGACAATCAACTGCAACTTGGTATAG 60.404 42.308 4.38 0.00 0.00 1.31
185 186 5.414454 GGACAATCAACTGCAACTTGGTATA 59.586 40.000 4.38 0.00 0.00 1.47
186 187 4.218417 GGACAATCAACTGCAACTTGGTAT 59.782 41.667 4.38 0.00 0.00 2.73
187 188 3.568007 GGACAATCAACTGCAACTTGGTA 59.432 43.478 4.38 0.00 0.00 3.25
188 189 2.362077 GGACAATCAACTGCAACTTGGT 59.638 45.455 4.38 0.00 0.00 3.67
189 190 2.624838 AGGACAATCAACTGCAACTTGG 59.375 45.455 4.38 0.00 0.00 3.61
190 191 3.996150 AGGACAATCAACTGCAACTTG 57.004 42.857 0.00 0.00 0.00 3.16
191 192 3.068590 CCAAGGACAATCAACTGCAACTT 59.931 43.478 0.00 0.00 0.00 2.66
192 193 2.624838 CCAAGGACAATCAACTGCAACT 59.375 45.455 0.00 0.00 0.00 3.16
193 194 2.622942 TCCAAGGACAATCAACTGCAAC 59.377 45.455 0.00 0.00 0.00 4.17
194 195 2.942804 TCCAAGGACAATCAACTGCAA 58.057 42.857 0.00 0.00 0.00 4.08
195 196 2.655090 TCCAAGGACAATCAACTGCA 57.345 45.000 0.00 0.00 0.00 4.41
196 197 3.128242 CAGATCCAAGGACAATCAACTGC 59.872 47.826 0.00 0.00 0.00 4.40
197 198 4.330250 ACAGATCCAAGGACAATCAACTG 58.670 43.478 0.00 0.00 0.00 3.16
198 199 4.566488 GGACAGATCCAAGGACAATCAACT 60.566 45.833 0.00 0.00 45.47 3.16
199 200 3.691609 GGACAGATCCAAGGACAATCAAC 59.308 47.826 0.00 0.00 45.47 3.18
200 201 3.955471 GGACAGATCCAAGGACAATCAA 58.045 45.455 0.00 0.00 45.47 2.57
201 202 3.634397 GGACAGATCCAAGGACAATCA 57.366 47.619 0.00 0.00 45.47 2.57
212 213 5.796424 AATATTTTGGCATGGACAGATCC 57.204 39.130 0.00 0.00 46.48 3.36
213 214 5.464389 GCAAATATTTTGGCATGGACAGATC 59.536 40.000 0.00 0.00 31.57 2.75
214 215 5.362263 GCAAATATTTTGGCATGGACAGAT 58.638 37.500 0.00 0.00 31.57 2.90
215 216 4.677514 CGCAAATATTTTGGCATGGACAGA 60.678 41.667 10.19 0.00 30.53 3.41
216 217 3.552699 CGCAAATATTTTGGCATGGACAG 59.447 43.478 10.19 0.00 30.53 3.51
217 218 3.519579 CGCAAATATTTTGGCATGGACA 58.480 40.909 10.19 0.00 30.53 4.02
218 219 2.865551 CCGCAAATATTTTGGCATGGAC 59.134 45.455 10.19 0.00 30.53 4.02
219 220 2.741228 GCCGCAAATATTTTGGCATGGA 60.741 45.455 25.78 0.00 45.06 3.41
220 221 1.598601 GCCGCAAATATTTTGGCATGG 59.401 47.619 25.78 14.33 45.06 3.66
221 222 1.258458 CGCCGCAAATATTTTGGCATG 59.742 47.619 28.05 16.31 46.02 4.06
222 223 1.569708 CGCCGCAAATATTTTGGCAT 58.430 45.000 28.05 0.00 46.02 4.40
223 224 1.080995 GCGCCGCAAATATTTTGGCA 61.081 50.000 28.05 0.00 46.02 4.92
224 225 1.080995 TGCGCCGCAAATATTTTGGC 61.081 50.000 22.84 22.84 42.29 4.52
225 226 0.922717 CTGCGCCGCAAATATTTTGG 59.077 50.000 14.77 10.60 38.41 3.28
226 227 1.627879 ACTGCGCCGCAAATATTTTG 58.372 45.000 14.77 0.46 38.41 2.44
227 228 2.362169 AACTGCGCCGCAAATATTTT 57.638 40.000 14.77 0.00 38.41 1.82
228 229 2.258755 GAAACTGCGCCGCAAATATTT 58.741 42.857 14.77 11.35 38.41 1.40
229 230 1.201181 TGAAACTGCGCCGCAAATATT 59.799 42.857 14.77 5.61 38.41 1.28
230 231 0.808125 TGAAACTGCGCCGCAAATAT 59.192 45.000 14.77 0.00 38.41 1.28
231 232 0.109964 GTGAAACTGCGCCGCAAATA 60.110 50.000 14.77 0.00 38.41 1.40
232 233 1.371635 GTGAAACTGCGCCGCAAAT 60.372 52.632 14.77 0.46 38.41 2.32
233 234 2.025441 GTGAAACTGCGCCGCAAA 59.975 55.556 14.77 0.00 38.41 3.68
234 235 4.306471 CGTGAAACTGCGCCGCAA 62.306 61.111 14.77 0.00 38.41 4.85
236 237 3.702334 GATCGTGAAACTGCGCCGC 62.702 63.158 4.18 0.00 31.75 6.53
237 238 2.395690 GATCGTGAAACTGCGCCG 59.604 61.111 4.18 0.00 31.75 6.46
238 239 2.785258 GGATCGTGAAACTGCGCC 59.215 61.111 4.18 0.00 31.75 6.53
239 240 2.279937 GACGGATCGTGAAACTGCGC 62.280 60.000 0.00 0.00 41.37 6.09
240 241 1.702299 GACGGATCGTGAAACTGCG 59.298 57.895 0.00 0.00 41.37 5.18
241 242 1.702299 CGACGGATCGTGAAACTGC 59.298 57.895 0.00 0.00 43.66 4.40
251 252 2.806608 TGTTATTAGCCCGACGGATC 57.193 50.000 17.49 6.74 0.00 3.36
252 253 3.070446 TGAATGTTATTAGCCCGACGGAT 59.930 43.478 17.49 6.10 0.00 4.18
253 254 2.431419 TGAATGTTATTAGCCCGACGGA 59.569 45.455 17.49 0.00 0.00 4.69
254 255 2.828877 TGAATGTTATTAGCCCGACGG 58.171 47.619 6.99 6.99 0.00 4.79
255 256 6.018588 TGTTATTGAATGTTATTAGCCCGACG 60.019 38.462 0.00 0.00 0.00 5.12
256 257 7.254227 TGTTATTGAATGTTATTAGCCCGAC 57.746 36.000 0.00 0.00 0.00 4.79
257 258 9.733556 ATATGTTATTGAATGTTATTAGCCCGA 57.266 29.630 0.00 0.00 0.00 5.14
258 259 9.988350 GATATGTTATTGAATGTTATTAGCCCG 57.012 33.333 0.00 0.00 0.00 6.13
266 267 9.056005 GCACTCTGGATATGTTATTGAATGTTA 57.944 33.333 0.00 0.00 0.00 2.41
267 268 7.557358 TGCACTCTGGATATGTTATTGAATGTT 59.443 33.333 0.00 0.00 0.00 2.71
268 269 7.012704 GTGCACTCTGGATATGTTATTGAATGT 59.987 37.037 10.32 0.00 0.00 2.71
269 270 7.228108 AGTGCACTCTGGATATGTTATTGAATG 59.772 37.037 15.25 0.00 0.00 2.67
270 271 7.285566 AGTGCACTCTGGATATGTTATTGAAT 58.714 34.615 15.25 0.00 0.00 2.57
271 272 6.653020 AGTGCACTCTGGATATGTTATTGAA 58.347 36.000 15.25 0.00 0.00 2.69
272 273 6.239217 AGTGCACTCTGGATATGTTATTGA 57.761 37.500 15.25 0.00 0.00 2.57
273 274 6.932356 AAGTGCACTCTGGATATGTTATTG 57.068 37.500 21.95 0.00 0.00 1.90
274 275 6.543831 GGAAAGTGCACTCTGGATATGTTATT 59.456 38.462 21.95 5.49 0.00 1.40
275 276 6.058183 GGAAAGTGCACTCTGGATATGTTAT 58.942 40.000 21.95 0.00 0.00 1.89
276 277 5.189736 AGGAAAGTGCACTCTGGATATGTTA 59.810 40.000 21.95 0.00 0.00 2.41
277 278 4.018960 AGGAAAGTGCACTCTGGATATGTT 60.019 41.667 21.95 7.11 0.00 2.71
278 279 3.521126 AGGAAAGTGCACTCTGGATATGT 59.479 43.478 21.95 0.00 0.00 2.29
279 280 3.875727 CAGGAAAGTGCACTCTGGATATG 59.124 47.826 21.95 9.13 0.00 1.78
280 281 3.683847 GCAGGAAAGTGCACTCTGGATAT 60.684 47.826 26.48 7.53 43.41 1.63
281 282 2.355108 GCAGGAAAGTGCACTCTGGATA 60.355 50.000 26.48 0.00 43.41 2.59
282 283 1.612726 GCAGGAAAGTGCACTCTGGAT 60.613 52.381 26.48 8.87 43.41 3.41
283 284 0.250467 GCAGGAAAGTGCACTCTGGA 60.250 55.000 26.48 0.00 43.41 3.86
284 285 2.251600 GCAGGAAAGTGCACTCTGG 58.748 57.895 26.48 14.78 43.41 3.86
291 292 1.461127 CTCGTAACTGCAGGAAAGTGC 59.539 52.381 19.93 0.42 44.27 4.40
292 293 2.476619 CACTCGTAACTGCAGGAAAGTG 59.523 50.000 19.93 18.03 0.00 3.16
293 294 2.548067 CCACTCGTAACTGCAGGAAAGT 60.548 50.000 19.93 10.76 0.00 2.66
294 295 2.069273 CCACTCGTAACTGCAGGAAAG 58.931 52.381 19.93 10.12 0.00 2.62
295 296 1.414919 ACCACTCGTAACTGCAGGAAA 59.585 47.619 19.93 0.00 0.00 3.13
296 297 1.045407 ACCACTCGTAACTGCAGGAA 58.955 50.000 19.93 1.86 0.00 3.36
297 298 0.317160 CACCACTCGTAACTGCAGGA 59.683 55.000 19.93 4.34 0.00 3.86
298 299 0.033504 ACACCACTCGTAACTGCAGG 59.966 55.000 19.93 0.72 0.00 4.85
299 300 1.865865 AACACCACTCGTAACTGCAG 58.134 50.000 13.48 13.48 0.00 4.41
300 301 2.206750 GAAACACCACTCGTAACTGCA 58.793 47.619 0.00 0.00 0.00 4.41
301 302 1.529865 GGAAACACCACTCGTAACTGC 59.470 52.381 0.00 0.00 38.79 4.40
302 303 1.790623 CGGAAACACCACTCGTAACTG 59.209 52.381 0.00 0.00 38.90 3.16
303 304 1.410153 ACGGAAACACCACTCGTAACT 59.590 47.619 0.00 0.00 38.90 2.24
304 305 1.523934 CACGGAAACACCACTCGTAAC 59.476 52.381 0.00 0.00 38.90 2.50
305 306 1.408340 TCACGGAAACACCACTCGTAA 59.592 47.619 0.00 0.00 38.90 3.18
306 307 1.001048 CTCACGGAAACACCACTCGTA 60.001 52.381 0.00 0.00 38.90 3.43
307 308 0.249322 CTCACGGAAACACCACTCGT 60.249 55.000 0.00 0.00 38.90 4.18
308 309 0.249322 ACTCACGGAAACACCACTCG 60.249 55.000 0.00 0.00 38.90 4.18
309 310 1.949465 AACTCACGGAAACACCACTC 58.051 50.000 0.00 0.00 38.90 3.51
310 311 3.200483 GTTAACTCACGGAAACACCACT 58.800 45.455 0.00 0.00 38.90 4.00
311 312 2.288729 GGTTAACTCACGGAAACACCAC 59.711 50.000 5.42 0.00 38.90 4.16
312 313 2.093075 TGGTTAACTCACGGAAACACCA 60.093 45.455 5.42 0.00 38.90 4.17
313 314 2.563702 TGGTTAACTCACGGAAACACC 58.436 47.619 5.42 0.00 0.00 4.16
314 315 4.619437 TTTGGTTAACTCACGGAAACAC 57.381 40.909 5.42 0.00 0.00 3.32
315 316 5.183522 AGTTTTTGGTTAACTCACGGAAACA 59.816 36.000 5.42 0.00 30.20 2.83
316 317 5.643664 AGTTTTTGGTTAACTCACGGAAAC 58.356 37.500 5.42 11.47 30.20 2.78
317 318 5.900865 AGTTTTTGGTTAACTCACGGAAA 57.099 34.783 5.42 0.00 30.20 3.13
318 319 5.296531 GGTAGTTTTTGGTTAACTCACGGAA 59.703 40.000 5.42 0.00 37.12 4.30
319 320 4.815846 GGTAGTTTTTGGTTAACTCACGGA 59.184 41.667 5.42 0.00 37.12 4.69
320 321 4.575645 TGGTAGTTTTTGGTTAACTCACGG 59.424 41.667 5.42 0.00 37.12 4.94
321 322 5.064962 TGTGGTAGTTTTTGGTTAACTCACG 59.935 40.000 5.42 0.00 35.09 4.35
322 323 6.439675 TGTGGTAGTTTTTGGTTAACTCAC 57.560 37.500 5.42 0.00 37.12 3.51
323 324 7.648039 ATTGTGGTAGTTTTTGGTTAACTCA 57.352 32.000 5.42 0.00 37.12 3.41
324 325 8.192110 TCAATTGTGGTAGTTTTTGGTTAACTC 58.808 33.333 5.13 0.00 37.12 3.01
325 326 7.977293 GTCAATTGTGGTAGTTTTTGGTTAACT 59.023 33.333 5.13 0.00 39.13 2.24
326 327 7.043920 CGTCAATTGTGGTAGTTTTTGGTTAAC 60.044 37.037 5.13 0.00 0.00 2.01
803 815 4.157656 TCCACCATTATGCACTTACAAAGC 59.842 41.667 0.00 0.00 0.00 3.51
985 1000 1.757118 CACCATCTTCTTCGGCCTCTA 59.243 52.381 0.00 0.00 0.00 2.43
1085 1103 2.743664 TCGCACATCTCCATCAACAAAG 59.256 45.455 0.00 0.00 0.00 2.77
1104 1122 0.592637 TCCAGCAGCAAAACACATCG 59.407 50.000 0.00 0.00 0.00 3.84
1408 1461 5.411361 GCACACAACACCTGACTATATTCAA 59.589 40.000 0.00 0.00 0.00 2.69
1919 1990 2.297033 TGGCAAGCTTCATCTTTTCCAC 59.703 45.455 0.00 0.00 0.00 4.02
1945 2016 3.214328 ACTTCGAAGAATGCACCTTTGT 58.786 40.909 31.08 1.94 45.90 2.83
1962 2033 7.279536 TGTTCTGAATGATATCTGCTTGACTTC 59.720 37.037 3.98 0.00 0.00 3.01
1966 2037 7.277396 TCATGTTCTGAATGATATCTGCTTGA 58.723 34.615 3.98 0.00 0.00 3.02
2060 2131 3.129813 GCATTGACCAGATCAGCAATCAA 59.870 43.478 0.00 0.00 38.99 2.57
2166 2238 7.062584 AGGCCAGCTATATATATAGGCCTAT 57.937 40.000 32.51 28.00 43.46 2.57
2401 2475 8.650490 TGTCAGTTATCCACACATGATATATGT 58.350 33.333 0.00 0.00 0.00 2.29
2438 2512 2.504367 TGCTGCTTTCTACTTCCAACC 58.496 47.619 0.00 0.00 0.00 3.77
2497 2592 8.867112 TGCTACTTGCTACATATGTTAGTTAC 57.133 34.615 14.77 8.64 43.37 2.50
2764 2981 3.361977 GCGCCGGGCAAGAAGAAA 61.362 61.111 20.71 0.00 42.87 2.52
2789 3006 2.892640 CGGCGAGGAAGATGTGGA 59.107 61.111 0.00 0.00 0.00 4.02
2838 3055 1.728672 GAGGTCGTCGATCTCCCAC 59.271 63.158 22.51 2.99 34.02 4.61
3016 3242 1.673920 GAGTCCTCTGATGACGAGTCC 59.326 57.143 7.32 0.00 37.80 3.85
3017 3243 1.329292 CGAGTCCTCTGATGACGAGTC 59.671 57.143 7.32 0.00 37.80 3.36
3018 3244 1.339247 ACGAGTCCTCTGATGACGAGT 60.339 52.381 7.32 8.44 37.80 4.18
3019 3245 1.329292 GACGAGTCCTCTGATGACGAG 59.671 57.143 7.32 7.92 37.80 4.18
3020 3246 1.370609 GACGAGTCCTCTGATGACGA 58.629 55.000 7.32 0.00 37.80 4.20
3021 3247 0.026933 CGACGAGTCCTCTGATGACG 59.973 60.000 7.32 0.00 37.80 4.35
3022 3248 1.062880 GACGACGAGTCCTCTGATGAC 59.937 57.143 0.00 5.09 43.95 3.06
3023 3249 1.370609 GACGACGAGTCCTCTGATGA 58.629 55.000 0.00 0.00 43.95 2.92
3024 3250 3.907927 GACGACGAGTCCTCTGATG 57.092 57.895 0.00 0.00 43.95 3.07
3106 3368 0.554792 CTCTCCCAGCCCCAATCAAT 59.445 55.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.