Multiple sequence alignment - TraesCS2A01G297600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2A01G297600
chr2A
100.000
5475
0
0
1
5475
511528991
511534465
0.000000e+00
10111.0
1
TraesCS2A01G297600
chr2D
95.643
5394
163
37
111
5475
377311519
377316869
0.000000e+00
8593.0
2
TraesCS2A01G297600
chr2D
92.920
113
7
1
1
113
377311310
377311421
4.390000e-36
163.0
3
TraesCS2A01G297600
chr2B
96.311
4066
95
25
257
4307
448915625
448919650
0.000000e+00
6626.0
4
TraesCS2A01G297600
chr2B
86.024
1152
110
23
4354
5475
448920048
448921178
0.000000e+00
1188.0
5
TraesCS2A01G297600
chr2B
93.750
240
11
3
1
239
448915404
448915640
1.880000e-94
357.0
6
TraesCS2A01G297600
chr4B
89.720
107
11
0
1611
1717
648061788
648061894
2.660000e-28
137.0
7
TraesCS2A01G297600
chr4B
88.073
109
13
0
1609
1717
647763006
647762898
4.450000e-26
130.0
8
TraesCS2A01G297600
chr4D
87.826
115
14
0
1603
1717
503140659
503140773
9.570000e-28
135.0
9
TraesCS2A01G297600
chr5A
88.073
109
13
0
1609
1717
687366215
687366107
4.450000e-26
130.0
10
TraesCS2A01G297600
chr5A
84.615
65
10
0
1625
1689
390566116
390566052
1.270000e-06
65.8
11
TraesCS2A01G297600
chr3D
86.139
101
14
0
1603
1703
530415867
530415967
5.800000e-20
110.0
12
TraesCS2A01G297600
chr3A
87.778
90
11
0
1614
1703
664137502
664137591
7.500000e-19
106.0
13
TraesCS2A01G297600
chr7D
100.000
38
0
0
4695
4732
47379576
47379613
2.740000e-08
71.3
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2A01G297600
chr2A
511528991
511534465
5474
False
10111.000000
10111
100.000000
1
5475
1
chr2A.!!$F1
5474
1
TraesCS2A01G297600
chr2D
377311310
377316869
5559
False
4378.000000
8593
94.281500
1
5475
2
chr2D.!!$F1
5474
2
TraesCS2A01G297600
chr2B
448915404
448921178
5774
False
2723.666667
6626
92.028333
1
5475
3
chr2B.!!$F1
5474
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
969
1081
0.470268
ACCCCTAGTAGCTGCTAGCC
60.470
60.0
27.95
0.0
43.77
3.93
F
1983
2107
0.605589
ACAAGGTCAAGAGAGGCGAG
59.394
55.0
0.00
0.0
0.00
5.03
F
2751
2875
0.250234
AGCGCCTCTCAACAGCAATA
59.750
50.0
2.29
0.0
0.00
1.90
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2178
2302
0.106819
GGCAGTAGTACCCTCTCCGA
60.107
60.0
0.00
0.0
0.00
4.55
R
3277
3409
0.111061
TGGTTTGCTGCAGATGGAGT
59.889
50.0
20.43
0.0
35.78
3.85
R
4712
5197
0.032416
ACACCCGGCCTCTACATAGT
60.032
55.0
0.00
0.0
0.00
2.12
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
34
35
4.698304
CAGTTATTATGGTGTTTGACCCGT
59.302
41.667
0.00
0.00
45.45
5.28
52
53
1.634702
GTTTCAGCGACTCTGCTAGG
58.365
55.000
0.00
0.00
45.23
3.02
124
225
7.237679
TCCCTTTGCTAAATATATCAGGCTACT
59.762
37.037
0.00
0.00
0.00
2.57
138
239
6.747414
TCAGGCTACTGTATGTATGGATTT
57.253
37.500
0.00
0.00
45.14
2.17
144
245
6.206829
GCTACTGTATGTATGGATTTTTCCCC
59.793
42.308
0.00
0.00
0.00
4.81
160
261
5.638530
TTTCCCCTTTGCCATTTTTACTT
57.361
34.783
0.00
0.00
0.00
2.24
222
324
8.461222
CCATCACAACTCACAAACATATGTATT
58.539
33.333
9.21
3.31
30.84
1.89
249
351
3.876914
TCAGCTTTCTCTTTCTCGCAAAA
59.123
39.130
0.00
0.00
0.00
2.44
251
353
4.674211
CAGCTTTCTCTTTCTCGCAAAAAG
59.326
41.667
0.00
0.00
35.49
2.27
253
355
5.066505
AGCTTTCTCTTTCTCGCAAAAAGAA
59.933
36.000
6.61
1.40
41.02
2.52
377
484
1.129998
GCATGTGTCATGTCTCTGTGC
59.870
52.381
10.68
0.58
0.00
4.57
379
486
3.853475
CATGTGTCATGTCTCTGTGCTA
58.147
45.455
0.00
0.00
0.00
3.49
479
590
1.001764
CCAGGCCAGTGAGCAATGA
60.002
57.895
5.01
0.00
0.00
2.57
513
624
2.837591
TGTCCAAATCCTTCCAGATCGA
59.162
45.455
0.00
0.00
0.00
3.59
577
688
3.182572
GTGACGCATAGAATTTAGCTCCG
59.817
47.826
0.00
0.00
0.00
4.63
620
731
6.764308
AGTGATGACATACAAAATTCTGGG
57.236
37.500
0.00
0.00
0.00
4.45
696
807
5.427157
AGACACTGTGGTAGAGATAGAGAGA
59.573
44.000
13.09
0.00
0.00
3.10
697
808
5.680619
ACACTGTGGTAGAGATAGAGAGAG
58.319
45.833
13.09
0.00
0.00
3.20
708
819
0.568192
TAGAGAGAGGGGGAATGGGG
59.432
60.000
0.00
0.00
0.00
4.96
771
882
4.202161
ACATGCATTCTCCTCTACTTACCG
60.202
45.833
0.00
0.00
0.00
4.02
921
1033
6.655078
ACAAGAAAGGCACAAATTCATACT
57.345
33.333
0.00
0.00
0.00
2.12
937
1049
3.067742
TCATACTCCGAAATCCGTTCCTC
59.932
47.826
0.00
0.00
36.31
3.71
958
1070
1.274242
CCTTCACCCCTAACCCCTAGT
60.274
57.143
0.00
0.00
0.00
2.57
959
1071
2.022722
CCTTCACCCCTAACCCCTAGTA
60.023
54.545
0.00
0.00
0.00
1.82
960
1072
3.306613
CTTCACCCCTAACCCCTAGTAG
58.693
54.545
0.00
0.00
0.00
2.57
961
1073
1.062658
TCACCCCTAACCCCTAGTAGC
60.063
57.143
0.00
0.00
0.00
3.58
962
1074
1.062352
CACCCCTAACCCCTAGTAGCT
60.062
57.143
0.00
0.00
0.00
3.32
963
1075
1.062352
ACCCCTAACCCCTAGTAGCTG
60.062
57.143
0.00
0.00
0.00
4.24
964
1076
1.049402
CCCTAACCCCTAGTAGCTGC
58.951
60.000
0.00
0.00
0.00
5.25
965
1077
1.413227
CCCTAACCCCTAGTAGCTGCT
60.413
57.143
9.94
9.94
0.00
4.24
966
1078
2.158355
CCCTAACCCCTAGTAGCTGCTA
60.158
54.545
11.31
11.31
0.00
3.49
967
1079
3.158676
CCTAACCCCTAGTAGCTGCTAG
58.841
54.545
26.80
26.80
38.46
3.42
968
1080
1.415200
AACCCCTAGTAGCTGCTAGC
58.585
55.000
27.95
8.10
42.84
3.42
969
1081
0.470268
ACCCCTAGTAGCTGCTAGCC
60.470
60.000
27.95
0.00
43.77
3.93
970
1082
1.528292
CCCCTAGTAGCTGCTAGCCG
61.528
65.000
27.95
20.23
43.77
5.52
1014
1126
5.008019
ACTCATTCACCAATATAAAGCAGCG
59.992
40.000
0.00
0.00
0.00
5.18
1022
1134
1.095228
TATAAAGCAGCGCCACAGCC
61.095
55.000
2.29
0.00
38.01
4.85
1196
1320
3.840124
GCTAGGTAGCTATTGGTGGTT
57.160
47.619
1.35
0.00
45.62
3.67
1524
1648
4.514577
CCGCCGTCGCTCTCCAAT
62.515
66.667
0.00
0.00
0.00
3.16
1983
2107
0.605589
ACAAGGTCAAGAGAGGCGAG
59.394
55.000
0.00
0.00
0.00
5.03
2453
2577
4.745751
TACGTTTCCCAGGGCGCG
62.746
66.667
0.00
0.00
0.00
6.86
2534
2658
3.005791
TCTCTCTGACAATTCGTTGCTGA
59.994
43.478
0.00
0.00
0.00
4.26
2634
2758
0.668401
GCCTGCAATGTGGCTTTCAC
60.668
55.000
7.42
0.00
45.26
3.18
2751
2875
0.250234
AGCGCCTCTCAACAGCAATA
59.750
50.000
2.29
0.00
0.00
1.90
2752
2876
1.134280
AGCGCCTCTCAACAGCAATAT
60.134
47.619
2.29
0.00
0.00
1.28
2753
2877
2.103094
AGCGCCTCTCAACAGCAATATA
59.897
45.455
2.29
0.00
0.00
0.86
2754
2878
3.070018
GCGCCTCTCAACAGCAATATAT
58.930
45.455
0.00
0.00
0.00
0.86
2876
3008
7.865889
GTGGAATCTTATTCCGTTTGTTCTTTT
59.134
33.333
12.73
0.00
41.43
2.27
3096
3228
3.869272
CTCCAGCATTGCCGCGAC
61.869
66.667
8.23
0.00
36.85
5.19
3104
3236
3.675619
ATTGCCGCGACCAGGTACC
62.676
63.158
8.23
2.73
0.00
3.34
3144
3276
6.014755
ACTCGAGTGTCCAATCATCATCATAT
60.015
38.462
19.30
0.00
0.00
1.78
3147
3279
9.189156
TCGAGTGTCCAATCATCATCATATATA
57.811
33.333
0.00
0.00
0.00
0.86
3148
3280
9.807649
CGAGTGTCCAATCATCATCATATATAA
57.192
33.333
0.00
0.00
0.00
0.98
3162
3294
9.962809
TCATCATATATAAACCTTGATGATGCA
57.037
29.630
16.67
0.00
44.56
3.96
3223
3355
4.422073
TCTTCATCACTGACCTTTGTGT
57.578
40.909
0.00
0.00
35.82
3.72
3224
3356
4.780815
TCTTCATCACTGACCTTTGTGTT
58.219
39.130
0.00
0.00
35.82
3.32
3225
3357
5.924356
TCTTCATCACTGACCTTTGTGTTA
58.076
37.500
0.00
0.00
35.82
2.41
3226
3358
6.353323
TCTTCATCACTGACCTTTGTGTTAA
58.647
36.000
0.00
0.00
35.82
2.01
3602
3734
1.175983
AGATCGTCCCTGAGATCGCC
61.176
60.000
0.00
0.00
45.68
5.54
3729
3861
4.432741
GCAAGGAGAGGGTGGCCC
62.433
72.222
0.00
0.00
45.90
5.80
3791
3923
1.741770
GTCCATCAAACTCGGCGCT
60.742
57.895
7.64
0.00
0.00
5.92
3965
4097
0.179100
CCGATCAGTACTGCCAGGTG
60.179
60.000
18.45
4.48
0.00
4.00
4108
4240
1.651240
CCGCCAACCAAGCAGATGAG
61.651
60.000
0.00
0.00
0.00
2.90
4109
4241
1.651240
CGCCAACCAAGCAGATGAGG
61.651
60.000
0.00
0.00
0.00
3.86
4140
4272
1.021390
GGAGGAGCACACGGTTGATG
61.021
60.000
0.00
0.00
0.00
3.07
4166
4298
2.064762
CACAAAGAAGCTGAGACCTCG
58.935
52.381
0.00
0.00
0.00
4.63
4182
4314
1.656095
CCTCGTCGTCTTGCTTTGATC
59.344
52.381
0.00
0.00
0.00
2.92
4214
4346
0.741326
TAGAGAGTGAGCATGCGGAC
59.259
55.000
13.01
12.83
0.00
4.79
4543
5027
3.446161
TCATCTACTCTACGGTTTGGGTG
59.554
47.826
0.00
0.00
0.00
4.61
4587
5071
6.372381
TGACGTGTAAGCTGTATTCTAGTGTA
59.628
38.462
0.00
0.00
0.00
2.90
4641
5125
6.613233
CATAGTGTCGGTCCTATATGACTTC
58.387
44.000
7.91
1.27
35.54
3.01
4648
5132
7.068962
TGTCGGTCCTATATGACTTCATTGTTA
59.931
37.037
7.91
0.00
37.76
2.41
4650
5134
6.645415
CGGTCCTATATGACTTCATTGTTACC
59.355
42.308
7.91
0.02
37.76
2.85
4697
5182
5.954296
ATTCTCAGACTGTTGATGTTTGG
57.046
39.130
1.59
0.00
0.00
3.28
4712
5197
6.000840
TGATGTTTGGCTGTGTGTATCTTAA
58.999
36.000
0.00
0.00
0.00
1.85
4740
5225
0.479378
AGGCCGGGTGTTTCCTTTAA
59.521
50.000
2.18
0.00
36.25
1.52
4746
5231
3.759618
CCGGGTGTTTCCTTTAATGCTTA
59.240
43.478
0.00
0.00
36.25
3.09
4774
5260
2.169561
TCCTCACAATGCTATTACGCCA
59.830
45.455
0.00
0.00
0.00
5.69
4795
5281
4.038883
CCAATAAGTAGACTTACCCCTCCG
59.961
50.000
4.28
0.00
40.81
4.63
5127
5641
3.683937
GCGGTGCATGGCAACCTT
61.684
61.111
5.37
0.00
44.30
3.50
5206
5720
1.067250
GTGGTGGCGTGCATGTTTT
59.933
52.632
7.93
0.00
0.00
2.43
5207
5721
0.529555
GTGGTGGCGTGCATGTTTTT
60.530
50.000
7.93
0.00
0.00
1.94
5224
5738
0.035820
TTTCTACATCCGGTGGTGGC
60.036
55.000
0.00
0.00
0.00
5.01
5343
5858
1.425066
TGTTGTCTGCCCCTTTGATCT
59.575
47.619
0.00
0.00
0.00
2.75
5407
5922
2.668632
GGGATGTCCGGTGCTGAA
59.331
61.111
0.00
0.00
36.71
3.02
5416
5931
1.733041
CGGTGCTGAACGACGACAT
60.733
57.895
0.00
0.00
0.00
3.06
5428
5943
1.007011
CGACGACATTTGCGCTCTAAG
60.007
52.381
9.73
0.00
0.00
2.18
5435
5950
3.257393
CATTTGCGCTCTAAGTCTGTCT
58.743
45.455
9.73
0.00
0.00
3.41
5444
5959
4.219725
GCTCTAAGTCTGTCTGGTTCTTCT
59.780
45.833
0.00
0.00
0.00
2.85
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
52
53
6.725246
TCTACTTGCAAAACTTAGAGCAAAC
58.275
36.000
0.00
0.00
45.18
2.93
124
225
6.127196
GCAAAGGGGAAAAATCCATACATACA
60.127
38.462
0.00
0.00
0.00
2.29
138
239
5.372373
CAAGTAAAAATGGCAAAGGGGAAA
58.628
37.500
0.00
0.00
0.00
3.13
144
245
6.701400
ACAACTAGCAAGTAAAAATGGCAAAG
59.299
34.615
0.00
0.00
33.75
2.77
160
261
6.350110
GGCCATGAATCTTTTTACAACTAGCA
60.350
38.462
0.00
0.00
0.00
3.49
222
324
5.105752
GCGAGAAAGAGAAAGCTGAGATTA
58.894
41.667
0.00
0.00
0.00
1.75
223
325
3.932089
GCGAGAAAGAGAAAGCTGAGATT
59.068
43.478
0.00
0.00
0.00
2.40
224
326
3.056250
TGCGAGAAAGAGAAAGCTGAGAT
60.056
43.478
0.00
0.00
0.00
2.75
228
330
3.885484
TTTGCGAGAAAGAGAAAGCTG
57.115
42.857
0.00
0.00
0.00
4.24
253
355
6.387465
GCTTTTATAGAAAGCCGAGGTTTTT
58.613
36.000
11.39
0.20
45.01
1.94
261
363
8.408416
GAGCATCAAAGCTTTTATAGAAAGCCG
61.408
40.741
9.53
8.65
46.75
5.52
262
364
6.694844
GAGCATCAAAGCTTTTATAGAAAGCC
59.305
38.462
9.53
4.16
46.75
4.35
302
408
5.144359
GTTGGCGTCACAATTAACTTACAG
58.856
41.667
0.00
0.00
32.24
2.74
415
522
7.254084
GCAAGAGTTTAAACATCAACTTTGTGG
60.254
37.037
20.06
6.90
33.22
4.17
479
590
5.363580
AGGATTTGGACAAGTGACAAATGTT
59.636
36.000
17.12
7.64
42.84
2.71
513
624
8.798859
AACTGACAAGCATAAGATTTATCACT
57.201
30.769
0.00
0.00
0.00
3.41
577
688
4.154918
CACTTGCCTCTAAAGAATGACCAC
59.845
45.833
0.00
0.00
0.00
4.16
708
819
3.443925
GGCGCCTCAGCTTTTCCC
61.444
66.667
22.15
0.00
36.60
3.97
771
882
3.801114
AGAAAAAGGTGTTGTTGGCTC
57.199
42.857
0.00
0.00
0.00
4.70
921
1033
0.616679
AGGGAGGAACGGATTTCGGA
60.617
55.000
0.00
0.00
44.45
4.55
937
1049
0.045162
TAGGGGTTAGGGGTGAAGGG
59.955
60.000
0.00
0.00
0.00
3.95
958
1070
3.540751
CAGGCCGGCTAGCAGCTA
61.541
66.667
28.56
1.13
41.99
3.32
961
1073
4.906792
GAGCAGGCCGGCTAGCAG
62.907
72.222
33.65
13.09
45.99
4.24
963
1075
3.976701
TTTGAGCAGGCCGGCTAGC
62.977
63.158
31.05
28.42
45.99
3.42
964
1076
1.372087
CTTTTGAGCAGGCCGGCTAG
61.372
60.000
31.05
19.87
45.99
3.42
965
1077
1.377202
CTTTTGAGCAGGCCGGCTA
60.377
57.895
31.05
13.77
45.99
3.93
967
1079
2.048603
ATCTTTTGAGCAGGCCGGC
61.049
57.895
21.36
21.36
0.00
6.13
968
1080
0.677731
TCATCTTTTGAGCAGGCCGG
60.678
55.000
0.00
0.00
0.00
6.13
969
1081
1.135575
GTTCATCTTTTGAGCAGGCCG
60.136
52.381
0.00
0.00
35.76
6.13
970
1082
1.888512
TGTTCATCTTTTGAGCAGGCC
59.111
47.619
0.00
0.00
40.23
5.19
1014
1126
3.982241
GCAAGTGGTGGCTGTGGC
61.982
66.667
0.00
0.00
37.82
5.01
1022
1134
1.512996
CCACTGCAGAGCAAGTGGTG
61.513
60.000
23.35
5.26
44.58
4.17
1196
1320
4.147449
CGGCCCTCATGTCGAGCA
62.147
66.667
0.00
0.00
40.78
4.26
1572
1696
1.662608
CTGCTGGCTATCGACGGAT
59.337
57.895
0.00
0.00
36.65
4.18
1746
1870
4.114997
GGATTGGCGTTGGTGGCG
62.115
66.667
0.00
0.00
37.19
5.69
1756
1880
1.676968
GGTTTTGGTGGGGATTGGC
59.323
57.895
0.00
0.00
0.00
4.52
2175
2299
0.179936
AGTAGTACCCTCTCCGACCG
59.820
60.000
0.00
0.00
0.00
4.79
2178
2302
0.106819
GGCAGTAGTACCCTCTCCGA
60.107
60.000
0.00
0.00
0.00
4.55
2453
2577
3.562973
CAGGGACATTCACATACTGATGC
59.437
47.826
0.00
0.00
36.43
3.91
2454
2578
4.774124
ACAGGGACATTCACATACTGATG
58.226
43.478
0.00
0.00
39.16
3.07
2751
2875
7.008021
AGTTGGGCAAACAAATTGAAGATAT
57.992
32.000
7.64
0.00
41.85
1.63
2752
2876
6.418057
AGTTGGGCAAACAAATTGAAGATA
57.582
33.333
7.64
0.00
41.85
1.98
2753
2877
5.294734
AGTTGGGCAAACAAATTGAAGAT
57.705
34.783
7.64
0.00
41.85
2.40
2754
2878
4.751767
AGTTGGGCAAACAAATTGAAGA
57.248
36.364
7.64
0.00
41.85
2.87
3104
3236
4.691685
CACTCGAGTACTAGCTAGGGTATG
59.308
50.000
24.35
11.23
0.00
2.39
3105
3237
4.347583
ACACTCGAGTACTAGCTAGGGTAT
59.652
45.833
24.35
6.28
0.00
2.73
3110
3242
3.794717
TGGACACTCGAGTACTAGCTAG
58.205
50.000
19.57
19.44
0.00
3.42
3111
3243
3.900966
TGGACACTCGAGTACTAGCTA
57.099
47.619
19.57
1.17
0.00
3.32
3112
3244
2.783609
TGGACACTCGAGTACTAGCT
57.216
50.000
19.57
0.00
0.00
3.32
3113
3245
3.377485
TGATTGGACACTCGAGTACTAGC
59.623
47.826
19.57
11.56
0.00
3.42
3114
3246
5.297029
TGATGATTGGACACTCGAGTACTAG
59.703
44.000
19.57
8.51
0.00
2.57
3144
3276
9.812347
AAGGAATATGCATCATCAAGGTTTATA
57.188
29.630
0.19
0.00
0.00
0.98
3147
3279
8.537728
TTAAGGAATATGCATCATCAAGGTTT
57.462
30.769
0.19
0.00
0.00
3.27
3148
3280
8.716674
ATTAAGGAATATGCATCATCAAGGTT
57.283
30.769
0.19
0.00
0.00
3.50
3149
3281
8.716674
AATTAAGGAATATGCATCATCAAGGT
57.283
30.769
0.19
0.00
0.00
3.50
3164
3296
9.640952
TTGGATCGGAGAAATTAATTAAGGAAT
57.359
29.630
0.01
0.00
43.58
3.01
3165
3297
9.640952
ATTGGATCGGAGAAATTAATTAAGGAA
57.359
29.630
0.01
0.00
43.58
3.36
3166
3298
9.284968
GATTGGATCGGAGAAATTAATTAAGGA
57.715
33.333
0.01
0.00
43.58
3.36
3167
3299
9.289782
AGATTGGATCGGAGAAATTAATTAAGG
57.710
33.333
0.01
0.00
43.58
2.69
3176
3308
8.752005
TCAAAATAAGATTGGATCGGAGAAAT
57.248
30.769
0.00
0.00
43.58
2.17
3179
3311
7.739825
AGATCAAAATAAGATTGGATCGGAGA
58.260
34.615
0.00
0.00
45.75
3.71
3195
3327
7.232127
ACAAAGGTCAGTGATGAAGATCAAAAT
59.768
33.333
0.00
0.00
40.39
1.82
3277
3409
0.111061
TGGTTTGCTGCAGATGGAGT
59.889
50.000
20.43
0.00
35.78
3.85
3401
3533
2.892425
GGATGCTTGCCGTCGAGG
60.892
66.667
0.00
0.00
44.97
4.63
3791
3923
2.488355
GATGCGGACGTCGAGGAA
59.512
61.111
12.85
0.00
42.43
3.36
4108
4240
3.787001
CCTCCTTGGTCTCCGGCC
61.787
72.222
0.00
0.00
0.00
6.13
4109
4241
2.683933
TCCTCCTTGGTCTCCGGC
60.684
66.667
0.00
0.00
37.07
6.13
4140
4272
4.332268
GGTCTCAGCTTCTTTGTGATCATC
59.668
45.833
0.00
0.00
0.00
2.92
4166
4298
3.494626
TGTTCAGATCAAAGCAAGACGAC
59.505
43.478
0.00
0.00
0.00
4.34
4182
4314
5.519566
GCTCACTCTCTATGTTGATGTTCAG
59.480
44.000
0.00
0.00
0.00
3.02
4214
4346
2.163390
CAGGCAGACATCACGCTCG
61.163
63.158
0.00
0.00
0.00
5.03
4244
4376
0.462225
TGAAAAACAGCGTCCGGTCA
60.462
50.000
0.00
0.00
0.00
4.02
4671
5155
7.707893
CCAAACATCAACAGTCTGAGAATTTTT
59.292
33.333
6.91
0.17
0.00
1.94
4672
5156
7.205297
CCAAACATCAACAGTCTGAGAATTTT
58.795
34.615
6.91
5.45
0.00
1.82
4673
5157
6.736794
GCCAAACATCAACAGTCTGAGAATTT
60.737
38.462
6.91
6.80
0.00
1.82
4674
5158
5.278660
GCCAAACATCAACAGTCTGAGAATT
60.279
40.000
6.91
1.40
0.00
2.17
4675
5159
4.217118
GCCAAACATCAACAGTCTGAGAAT
59.783
41.667
6.91
0.00
0.00
2.40
4677
5161
3.141398
GCCAAACATCAACAGTCTGAGA
58.859
45.455
6.91
4.56
0.00
3.27
4682
5167
2.358898
ACACAGCCAAACATCAACAGTC
59.641
45.455
0.00
0.00
0.00
3.51
4697
5182
7.863375
CCTCTACATAGTTAAGATACACACAGC
59.137
40.741
0.00
0.00
0.00
4.40
4712
5197
0.032416
ACACCCGGCCTCTACATAGT
60.032
55.000
0.00
0.00
0.00
2.12
4740
5225
5.300286
GCATTGTGAGGAAAGGTATAAGCAT
59.700
40.000
0.00
0.00
0.00
3.79
4746
5231
6.706270
CGTAATAGCATTGTGAGGAAAGGTAT
59.294
38.462
0.00
0.00
0.00
2.73
4774
5260
5.134725
TCGGAGGGGTAAGTCTACTTATT
57.865
43.478
5.90
0.00
40.20
1.40
4795
5281
6.320164
TGATCCTTAGTCTAGCTTCTCAGTTC
59.680
42.308
0.00
0.00
0.00
3.01
5001
5515
3.498397
AGTCATGTCGTGATTTTGGTGAC
59.502
43.478
0.00
0.00
39.48
3.67
5201
5715
3.142951
CACCACCGGATGTAGAAAAACA
58.857
45.455
9.46
0.00
0.00
2.83
5206
5720
1.600107
GCCACCACCGGATGTAGAA
59.400
57.895
9.46
0.00
0.00
2.10
5207
5721
2.363975
GGCCACCACCGGATGTAGA
61.364
63.158
9.46
0.00
0.00
2.59
5224
5738
4.553678
TCCACAACCTAACCCTAGATAGG
58.446
47.826
12.18
12.18
43.59
2.57
5311
5825
3.431346
GGCAGACAACATCATAGCTGAGA
60.431
47.826
0.00
0.00
34.12
3.27
5374
5889
2.660206
CCCGATGTTGGTCCACGA
59.340
61.111
0.00
0.00
0.00
4.35
5407
5922
0.109458
TAGAGCGCAAATGTCGTCGT
60.109
50.000
11.47
0.00
0.00
4.34
5416
5931
2.610479
CCAGACAGACTTAGAGCGCAAA
60.610
50.000
11.47
0.00
0.00
3.68
5428
5943
2.147150
GGCAAGAAGAACCAGACAGAC
58.853
52.381
0.00
0.00
0.00
3.51
5435
5950
1.494721
AGAACCAGGCAAGAAGAACCA
59.505
47.619
0.00
0.00
0.00
3.67
5444
5959
0.036388
GATGTCCGAGAACCAGGCAA
60.036
55.000
0.00
0.00
0.00
4.52
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.