Multiple sequence alignment - TraesCS2A01G297300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G297300 chr2A 100.000 2797 0 0 1 2797 511114945 511117741 0.000000e+00 5166
1 TraesCS2A01G297300 chr2D 93.929 2059 83 9 746 2797 377157225 377159248 0.000000e+00 3072
2 TraesCS2A01G297300 chr2D 95.652 414 14 1 1 414 377156330 377156739 0.000000e+00 662
3 TraesCS2A01G297300 chr2D 88.158 152 17 1 458 609 377156920 377157070 2.210000e-41 180
4 TraesCS2A01G297300 chr2B 93.056 2088 90 12 734 2797 448872869 448874925 0.000000e+00 3001
5 TraesCS2A01G297300 chr2B 92.246 374 18 3 1 367 448870631 448871000 1.150000e-143 520
6 TraesCS2A01G297300 chr2B 86.385 213 18 10 408 613 448871561 448871769 3.630000e-54 222
7 TraesCS2A01G297300 chr2B 79.608 255 30 4 1669 1907 13813802 13814050 2.230000e-36 163
8 TraesCS2A01G297300 chr7A 91.954 87 7 0 80 166 644845950 644846036 3.780000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G297300 chr2A 511114945 511117741 2796 False 5166.000000 5166 100.000000 1 2797 1 chr2A.!!$F1 2796
1 TraesCS2A01G297300 chr2D 377156330 377159248 2918 False 1304.666667 3072 92.579667 1 2797 3 chr2D.!!$F1 2796
2 TraesCS2A01G297300 chr2B 448870631 448874925 4294 False 1247.666667 3001 90.562333 1 2797 3 chr2B.!!$F2 2796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.108992 TGGGCGAGTAATCACGTGTC 60.109 55.0 16.51 4.13 0.00 3.67 F
738 2330 0.315869 CTTTGGCGACGTGTCAACAC 60.316 55.0 0.00 3.13 43.12 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1295 2894 0.376852 TTCAGTTCACGTGTGCTTGC 59.623 50.0 16.51 0.98 0.00 4.01 R
2549 4180 1.450531 AACAGCCAGCAGTTGTCAGC 61.451 55.0 0.00 0.00 39.27 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.866726 GCAGGAGATCGGGGAGAGC 61.867 68.421 0.00 0.00 35.01 4.09
187 188 3.091417 GTTACGCGCTGTTTGATTCATC 58.909 45.455 5.73 0.00 0.00 2.92
191 192 1.853646 GCGCTGTTTGATTCATCGCTC 60.854 52.381 0.00 0.00 43.71 5.03
264 265 0.108992 TGGGCGAGTAATCACGTGTC 60.109 55.000 16.51 4.13 0.00 3.67
272 273 5.389516 GCGAGTAATCACGTGTCATTTTTCT 60.390 40.000 16.51 8.19 0.00 2.52
273 274 6.590357 CGAGTAATCACGTGTCATTTTTCTT 58.410 36.000 16.51 0.00 0.00 2.52
274 275 7.069569 CGAGTAATCACGTGTCATTTTTCTTT 58.930 34.615 16.51 0.00 0.00 2.52
275 276 7.058354 CGAGTAATCACGTGTCATTTTTCTTTG 59.942 37.037 16.51 3.23 0.00 2.77
395 811 3.306973 CGTATGCAGACACCAGTACATTG 59.693 47.826 12.67 0.00 0.00 2.82
396 812 2.928801 TGCAGACACCAGTACATTGT 57.071 45.000 0.00 0.00 0.00 2.71
397 813 4.551702 ATGCAGACACCAGTACATTGTA 57.448 40.909 0.00 0.00 0.00 2.41
398 814 4.551702 TGCAGACACCAGTACATTGTAT 57.448 40.909 0.00 0.00 0.00 2.29
399 815 4.252878 TGCAGACACCAGTACATTGTATG 58.747 43.478 10.24 10.24 35.91 2.39
401 817 4.622933 GCAGACACCAGTACATTGTATGGA 60.623 45.833 21.81 0.00 33.90 3.41
402 818 5.111989 CAGACACCAGTACATTGTATGGAG 58.888 45.833 21.81 18.21 36.62 3.86
403 819 4.777896 AGACACCAGTACATTGTATGGAGT 59.222 41.667 21.81 20.17 39.00 3.85
404 820 4.832248 ACACCAGTACATTGTATGGAGTG 58.168 43.478 21.81 17.59 42.95 3.51
405 821 4.286032 ACACCAGTACATTGTATGGAGTGT 59.714 41.667 21.81 18.02 41.97 3.55
406 822 5.221843 ACACCAGTACATTGTATGGAGTGTT 60.222 40.000 21.81 0.00 41.97 3.32
409 970 5.937540 CCAGTACATTGTATGGAGTGTTCAA 59.062 40.000 14.92 0.00 41.97 2.69
439 1000 8.579863 AGACCATAGATTCTTTTCTTTTTGTGG 58.420 33.333 0.00 0.00 0.00 4.17
441 1002 7.508977 ACCATAGATTCTTTTCTTTTTGTGGGA 59.491 33.333 0.00 0.00 0.00 4.37
442 1003 8.534496 CCATAGATTCTTTTCTTTTTGTGGGAT 58.466 33.333 0.00 0.00 0.00 3.85
443 1004 9.933723 CATAGATTCTTTTCTTTTTGTGGGATT 57.066 29.630 0.00 0.00 0.00 3.01
452 1013 8.840833 TTTCTTTTTGTGGGATTAAATAAGGC 57.159 30.769 0.00 0.00 0.00 4.35
453 1014 7.790782 TCTTTTTGTGGGATTAAATAAGGCT 57.209 32.000 0.00 0.00 0.00 4.58
454 1015 7.610865 TCTTTTTGTGGGATTAAATAAGGCTG 58.389 34.615 0.00 0.00 0.00 4.85
455 1016 7.453126 TCTTTTTGTGGGATTAAATAAGGCTGA 59.547 33.333 0.00 0.00 0.00 4.26
456 1017 7.732222 TTTTGTGGGATTAAATAAGGCTGAT 57.268 32.000 0.00 0.00 0.00 2.90
465 1029 8.295288 GGATTAAATAAGGCTGATGATTCTGTG 58.705 37.037 0.00 0.00 0.00 3.66
476 1040 7.012704 GGCTGATGATTCTGTGTGTATACAAAT 59.987 37.037 7.25 3.25 38.82 2.32
477 1041 8.400947 GCTGATGATTCTGTGTGTATACAAATT 58.599 33.333 7.25 0.00 38.82 1.82
489 1053 9.787435 GTGTGTATACAAATTCCTATAATCCCA 57.213 33.333 7.25 0.00 38.82 4.37
549 1113 2.135139 GAAACACTGTCACGCTGATCA 58.865 47.619 0.00 0.00 0.00 2.92
556 1120 1.275010 TGTCACGCTGATCAAGGCTTA 59.725 47.619 0.00 0.00 0.00 3.09
586 1150 9.345517 CTGTGTATGAAATCATTCGACAAATTT 57.654 29.630 0.55 0.00 36.41 1.82
588 1152 9.340695 GTGTATGAAATCATTCGACAAATTTGA 57.659 29.630 24.64 2.30 36.41 2.69
697 2289 6.255453 GCAACAAAAGTGTAAAAGCAATGAGA 59.745 34.615 0.00 0.00 36.80 3.27
735 2327 3.018973 GCTTTGGCGACGTGTCAA 58.981 55.556 0.00 0.00 41.33 3.18
736 2328 1.368850 GCTTTGGCGACGTGTCAAC 60.369 57.895 0.00 0.00 43.12 3.18
737 2329 2.010670 CTTTGGCGACGTGTCAACA 58.989 52.632 0.00 0.00 43.12 3.33
738 2330 0.315869 CTTTGGCGACGTGTCAACAC 60.316 55.000 0.00 3.13 43.12 3.32
739 2331 1.019805 TTTGGCGACGTGTCAACACA 61.020 50.000 13.30 0.00 43.12 3.72
740 2332 3.179186 TTTGGCGACGTGTCAACACAC 62.179 52.381 13.30 1.79 43.12 3.82
843 2439 2.974698 CCAAGCCCGCATCGATCC 60.975 66.667 0.00 0.00 0.00 3.36
857 2453 2.764128 ATCCCAGCCGTCCATCGT 60.764 61.111 0.00 0.00 37.94 3.73
858 2454 2.978452 GATCCCAGCCGTCCATCGTG 62.978 65.000 0.00 0.00 37.94 4.35
1249 2845 0.741221 CCTCTGGAAGGTAAGCACGC 60.741 60.000 0.00 0.00 40.67 5.34
1252 2848 1.626654 CTGGAAGGTAAGCACGCACG 61.627 60.000 0.00 0.00 0.00 5.34
1325 2924 2.124903 GTGAACTGAATCGTGTGACGT 58.875 47.619 0.00 0.00 43.14 4.34
1359 2958 4.818546 TGCTTGCTTCAGATATTTAGCTCC 59.181 41.667 0.00 0.00 34.77 4.70
1376 2987 0.043334 TCCAAGGAGGAGGAAGGAGG 59.957 60.000 0.00 0.00 43.07 4.30
1377 2988 1.631071 CCAAGGAGGAGGAAGGAGGC 61.631 65.000 0.00 0.00 41.22 4.70
1378 2989 1.687493 AAGGAGGAGGAAGGAGGCG 60.687 63.158 0.00 0.00 0.00 5.52
1379 2990 2.042843 GGAGGAGGAAGGAGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
1380 2991 2.131067 GGAGGAGGAAGGAGGCGAG 61.131 68.421 0.00 0.00 0.00 5.03
1381 2992 2.042435 AGGAGGAAGGAGGCGAGG 60.042 66.667 0.00 0.00 0.00 4.63
1382 2993 2.042843 GGAGGAAGGAGGCGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
1383 2994 1.686110 GGAGGAAGGAGGCGAGGAA 60.686 63.158 0.00 0.00 0.00 3.36
1384 2995 1.681486 GGAGGAAGGAGGCGAGGAAG 61.681 65.000 0.00 0.00 0.00 3.46
1385 2996 1.681486 GAGGAAGGAGGCGAGGAAGG 61.681 65.000 0.00 0.00 0.00 3.46
1386 2997 2.736826 GGAAGGAGGCGAGGAAGGG 61.737 68.421 0.00 0.00 0.00 3.95
1387 2998 1.990614 GAAGGAGGCGAGGAAGGGT 60.991 63.158 0.00 0.00 0.00 4.34
1388 2999 1.539124 AAGGAGGCGAGGAAGGGTT 60.539 57.895 0.00 0.00 0.00 4.11
1403 3014 2.269241 GTTGGAGGGGAAGCCGAG 59.731 66.667 0.00 0.00 0.00 4.63
1452 3063 4.077184 CTGGGCAAGTACGGCGGA 62.077 66.667 13.24 0.00 0.00 5.54
1607 3237 2.904434 ACTTCTTAATCACAGACGGGGT 59.096 45.455 0.00 0.00 0.00 4.95
1620 3250 0.458260 ACGGGGTTTGTGCTTTGTTC 59.542 50.000 0.00 0.00 0.00 3.18
1624 3254 3.713288 GGGGTTTGTGCTTTGTTCTAAC 58.287 45.455 0.00 0.00 0.00 2.34
1646 3276 5.387788 ACATAAATGCTGCAGATTGGGATA 58.612 37.500 20.43 4.53 0.00 2.59
1819 3449 2.552802 ACTGATGCAGCAGTGAAGC 58.447 52.632 34.99 0.00 46.72 3.86
1855 3485 1.021390 ATGTGCGCTTGCTGGTAGTC 61.021 55.000 9.73 0.00 40.12 2.59
1856 3486 1.374758 GTGCGCTTGCTGGTAGTCT 60.375 57.895 9.73 0.00 40.12 3.24
1869 3499 1.605712 GGTAGTCTATGCATCACGCCC 60.606 57.143 0.19 3.43 41.33 6.13
1947 3577 4.805192 ACTTGTTTTGTATGTTTGCTGCTG 59.195 37.500 0.00 0.00 0.00 4.41
1948 3578 3.122297 TGTTTTGTATGTTTGCTGCTGC 58.878 40.909 8.89 8.89 40.20 5.25
1949 3579 3.181477 TGTTTTGTATGTTTGCTGCTGCT 60.181 39.130 17.00 0.00 40.48 4.24
1997 3627 8.424918 CCCAATGTATCAGAGACAAACTAGTAT 58.575 37.037 1.07 0.00 0.00 2.12
2085 3715 4.016444 GTCAATGCTTGGGAAATGACCTA 58.984 43.478 0.00 0.00 32.96 3.08
2113 3743 3.057104 TCTTCTGCATGGAATTTGCACAG 60.057 43.478 0.00 0.00 44.73 3.66
2129 3759 3.043635 CACAGTTTGCTCGACATATGC 57.956 47.619 1.58 0.00 0.00 3.14
2172 3802 4.939509 ATCCATTGTACTTTGTACACGC 57.060 40.909 9.70 0.00 0.00 5.34
2209 3839 3.633986 ACAGGTTTTTGCAGAGGAAGAAG 59.366 43.478 0.00 0.00 0.00 2.85
2284 3914 1.669115 GCTCAAGCGGCAGACTGAA 60.669 57.895 6.65 0.00 0.00 3.02
2320 3950 2.216488 GCGACTCAATGTACATACGCTG 59.784 50.000 23.33 14.37 41.25 5.18
2379 4009 6.142320 GCAAAGCAATAAGTTACTGAACACAC 59.858 38.462 0.00 0.00 38.10 3.82
2388 4018 0.603707 ACTGAACACACATCGCCAGG 60.604 55.000 0.00 0.00 0.00 4.45
2389 4019 1.915614 CTGAACACACATCGCCAGGC 61.916 60.000 0.00 0.00 0.00 4.85
2431 4062 6.458210 CAAAATTTGGTAGAAATCACCAGCT 58.542 36.000 0.00 0.00 46.44 4.24
2481 4112 2.833631 TCCCCAAGAAACGAACTCTC 57.166 50.000 0.00 0.00 0.00 3.20
2514 4145 8.557864 CAGAATGTCCTAATCATCATCTTGTTC 58.442 37.037 0.00 0.00 0.00 3.18
2663 4294 5.047847 TCAAGTACTTCAAAGTTGAGGTCG 58.952 41.667 11.59 1.69 42.93 4.79
2690 4321 4.800993 TGTGCCTTTTTAAACAACATCACG 59.199 37.500 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.456518 TGCTCTCCCCGATCTCCTG 60.457 63.158 0.00 0.00 0.00 3.86
187 188 3.827784 CGAAGAACCACGCGAGCG 61.828 66.667 15.93 16.38 46.03 5.03
249 250 6.153212 AGAAAAATGACACGTGATTACTCG 57.847 37.500 25.01 0.00 38.66 4.18
264 265 8.110002 GTGTAGTCTGCAAAACAAAGAAAAATG 58.890 33.333 0.00 0.00 0.00 2.32
272 273 4.736168 GCATGGTGTAGTCTGCAAAACAAA 60.736 41.667 0.00 0.00 34.77 2.83
273 274 3.243367 GCATGGTGTAGTCTGCAAAACAA 60.243 43.478 0.00 0.00 34.77 2.83
274 275 2.293122 GCATGGTGTAGTCTGCAAAACA 59.707 45.455 0.00 0.00 34.77 2.83
275 276 2.351738 GGCATGGTGTAGTCTGCAAAAC 60.352 50.000 0.00 0.00 36.34 2.43
436 997 7.449704 AGAATCATCAGCCTTATTTAATCCCAC 59.550 37.037 0.00 0.00 0.00 4.61
439 1000 8.295288 CACAGAATCATCAGCCTTATTTAATCC 58.705 37.037 0.00 0.00 0.00 3.01
441 1002 8.627403 CACACAGAATCATCAGCCTTATTTAAT 58.373 33.333 0.00 0.00 0.00 1.40
442 1003 7.611467 ACACACAGAATCATCAGCCTTATTTAA 59.389 33.333 0.00 0.00 0.00 1.52
443 1004 7.112122 ACACACAGAATCATCAGCCTTATTTA 58.888 34.615 0.00 0.00 0.00 1.40
447 1008 4.558226 ACACACAGAATCATCAGCCTTA 57.442 40.909 0.00 0.00 0.00 2.69
450 1011 5.359756 TGTATACACACAGAATCATCAGCC 58.640 41.667 0.08 0.00 0.00 4.85
452 1013 9.926751 GAATTTGTATACACACAGAATCATCAG 57.073 33.333 4.68 0.00 33.30 2.90
453 1014 8.892723 GGAATTTGTATACACACAGAATCATCA 58.107 33.333 4.68 0.00 33.30 3.07
454 1015 9.113838 AGGAATTTGTATACACACAGAATCATC 57.886 33.333 4.68 0.00 33.30 2.92
476 1040 6.292923 CACGTTACCATTGGGATTATAGGAA 58.707 40.000 7.78 0.00 38.05 3.36
477 1041 5.743714 GCACGTTACCATTGGGATTATAGGA 60.744 44.000 7.78 0.00 38.05 2.94
489 1053 1.473788 GGATACCCGCACGTTACCATT 60.474 52.381 0.00 0.00 0.00 3.16
549 1113 5.499004 TTTCATACACAGGAGTAAGCCTT 57.501 39.130 0.00 0.00 35.66 4.35
556 1120 5.812642 GTCGAATGATTTCATACACAGGAGT 59.187 40.000 0.00 0.00 35.10 3.85
718 2310 1.368850 GTTGACACGTCGCCAAAGC 60.369 57.895 0.00 0.00 0.00 3.51
719 2311 0.315869 GTGTTGACACGTCGCCAAAG 60.316 55.000 0.00 0.00 37.10 2.77
720 2312 1.716760 GTGTTGACACGTCGCCAAA 59.283 52.632 0.00 0.00 37.10 3.28
721 2313 3.401095 GTGTTGACACGTCGCCAA 58.599 55.556 0.00 0.00 37.10 4.52
730 2322 2.276201 GTGTAGCACAGTGTGTTGACA 58.724 47.619 23.73 20.18 35.75 3.58
731 2323 1.257936 CGTGTAGCACAGTGTGTTGAC 59.742 52.381 23.73 18.12 35.75 3.18
732 2324 1.566404 CGTGTAGCACAGTGTGTTGA 58.434 50.000 23.73 7.28 35.75 3.18
745 2337 3.409851 TTATGTACGGACTGCGTGTAG 57.590 47.619 5.77 0.00 0.00 2.74
746 2338 3.489568 CCATTATGTACGGACTGCGTGTA 60.490 47.826 5.77 0.00 0.00 2.90
754 2346 1.597663 GCTGTGCCATTATGTACGGAC 59.402 52.381 9.02 0.00 0.00 4.79
857 2453 2.356665 ATGTTACTGGGTGTTGTGCA 57.643 45.000 0.00 0.00 0.00 4.57
858 2454 2.360801 ACAATGTTACTGGGTGTTGTGC 59.639 45.455 0.00 0.00 0.00 4.57
859 2455 4.023536 GGTACAATGTTACTGGGTGTTGTG 60.024 45.833 0.00 0.00 32.64 3.33
967 2563 2.355716 GGACGATTGGATGGAGTGGAAA 60.356 50.000 0.00 0.00 0.00 3.13
1249 2845 2.225791 TAGTAGGCTGCAGTGGCGTG 62.226 60.000 16.64 0.00 45.35 5.34
1252 2848 1.112113 TACTAGTAGGCTGCAGTGGC 58.888 55.000 16.64 3.07 41.68 5.01
1295 2894 0.376852 TTCAGTTCACGTGTGCTTGC 59.623 50.000 16.51 0.98 0.00 4.01
1325 2924 1.330521 GAAGCAAGCAAACACGTCAGA 59.669 47.619 0.00 0.00 0.00 3.27
1359 2958 1.911471 GCCTCCTTCCTCCTCCTTG 59.089 63.158 0.00 0.00 0.00 3.61
1374 2985 2.203938 TCCAACCCTTCCTCGCCT 60.204 61.111 0.00 0.00 0.00 5.52
1376 2987 2.269241 CCTCCAACCCTTCCTCGC 59.731 66.667 0.00 0.00 0.00 5.03
1377 2988 2.670148 CCCCTCCAACCCTTCCTCG 61.670 68.421 0.00 0.00 0.00 4.63
1378 2989 0.845102 TTCCCCTCCAACCCTTCCTC 60.845 60.000 0.00 0.00 0.00 3.71
1379 2990 0.846870 CTTCCCCTCCAACCCTTCCT 60.847 60.000 0.00 0.00 0.00 3.36
1380 2991 1.691823 CTTCCCCTCCAACCCTTCC 59.308 63.158 0.00 0.00 0.00 3.46
1381 2992 1.000771 GCTTCCCCTCCAACCCTTC 60.001 63.158 0.00 0.00 0.00 3.46
1382 2993 2.548547 GGCTTCCCCTCCAACCCTT 61.549 63.158 0.00 0.00 0.00 3.95
1383 2994 2.941583 GGCTTCCCCTCCAACCCT 60.942 66.667 0.00 0.00 0.00 4.34
1384 2995 4.426313 CGGCTTCCCCTCCAACCC 62.426 72.222 0.00 0.00 0.00 4.11
1385 2996 3.327404 TCGGCTTCCCCTCCAACC 61.327 66.667 0.00 0.00 0.00 3.77
1386 2997 2.269241 CTCGGCTTCCCCTCCAAC 59.731 66.667 0.00 0.00 0.00 3.77
1387 2998 3.009115 CCTCGGCTTCCCCTCCAA 61.009 66.667 0.00 0.00 0.00 3.53
1388 2999 3.556038 TTCCTCGGCTTCCCCTCCA 62.556 63.158 0.00 0.00 0.00 3.86
1403 3014 0.456995 CTGCTCCGTTCTCGACTTCC 60.457 60.000 0.00 0.00 39.71 3.46
1452 3063 3.391382 GAGGTGGCCAGGTACGCT 61.391 66.667 5.11 0.00 0.00 5.07
1607 3237 7.925483 AGCATTTATGTTAGAACAAAGCACAAA 59.075 29.630 0.00 0.00 43.03 2.83
1620 3250 5.300034 TCCCAATCTGCAGCATTTATGTTAG 59.700 40.000 9.47 0.00 0.00 2.34
1624 3254 4.866508 ATCCCAATCTGCAGCATTTATG 57.133 40.909 9.47 1.31 0.00 1.90
1815 3445 1.789464 CGATCGAAGTGCCTATGCTTC 59.211 52.381 10.26 0.00 38.71 3.86
1819 3449 2.728318 CACATCGATCGAAGTGCCTATG 59.272 50.000 32.49 21.12 37.10 2.23
1842 3472 2.315925 TGCATAGACTACCAGCAAGC 57.684 50.000 4.20 0.00 31.42 4.01
1947 3577 8.144155 GGATTACTATCCTGTTTTACAAGAGC 57.856 38.462 0.00 0.00 45.88 4.09
2032 3662 6.425735 TGGACTCACCATTCATTGTTATCAT 58.574 36.000 0.00 0.00 44.64 2.45
2033 3663 5.814481 TGGACTCACCATTCATTGTTATCA 58.186 37.500 0.00 0.00 44.64 2.15
2048 3678 3.181516 GCATTGACGATTTCTGGACTCAC 60.182 47.826 0.00 0.00 0.00 3.51
2085 3715 6.335777 GCAAATTCCATGCAGAAGAGTTTAT 58.664 36.000 0.00 0.00 43.29 1.40
2113 3743 1.668419 AGGGCATATGTCGAGCAAAC 58.332 50.000 4.29 0.00 0.00 2.93
2150 3780 4.871557 GGCGTGTACAAAGTACAATGGATA 59.128 41.667 11.19 0.00 0.00 2.59
2152 3782 3.068560 GGCGTGTACAAAGTACAATGGA 58.931 45.455 11.19 0.00 0.00 3.41
2172 3802 6.530019 AAAACCTGTAAATATTCTGGCAGG 57.470 37.500 15.73 18.15 46.32 4.85
2284 3914 5.386958 TGAGTCGCTAGTATTTTGTGTCT 57.613 39.130 0.00 0.00 0.00 3.41
2320 3950 1.645710 TTCACCTCCTCCTTCCAGTC 58.354 55.000 0.00 0.00 0.00 3.51
2388 4018 2.328099 CGTCCTTTCTGGCAGTGGC 61.328 63.158 15.27 10.30 40.13 5.01
2389 4019 2.328099 GCGTCCTTTCTGGCAGTGG 61.328 63.158 15.27 14.76 35.26 4.00
2431 4062 2.701551 TCTTCCTGGGACTCTTTGGAA 58.298 47.619 0.00 0.00 35.74 3.53
2481 4112 6.825213 TGATGATTAGGACATTCTGGAACAAG 59.175 38.462 0.00 0.00 38.70 3.16
2549 4180 1.450531 AACAGCCAGCAGTTGTCAGC 61.451 55.000 0.00 0.00 39.27 4.26
2551 4182 1.727511 GCAACAGCCAGCAGTTGTCA 61.728 55.000 23.32 0.00 42.74 3.58
2663 4294 4.254492 TGTTGTTTAAAAAGGCACAACCC 58.746 39.130 13.36 0.00 45.60 4.11
2684 4315 7.485913 CCTTTAAGAAATGAATTCACCGTGATG 59.514 37.037 11.07 1.79 40.72 3.07
2690 4321 8.674607 ACGTATCCTTTAAGAAATGAATTCACC 58.325 33.333 11.07 3.31 40.72 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.