Multiple sequence alignment - TraesCS2A01G296700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G296700 chr2A 100.000 3080 0 0 1 3080 510854566 510857645 0.000000e+00 5688.0
1 TraesCS2A01G296700 chr2A 82.653 196 28 4 2814 3006 694150578 694150770 5.280000e-38 169.0
2 TraesCS2A01G296700 chr2D 92.166 2502 106 31 600 3080 376938275 376940707 0.000000e+00 3452.0
3 TraesCS2A01G296700 chr2D 81.959 194 32 3 2814 3006 553760151 553760342 8.840000e-36 161.0
4 TraesCS2A01G296700 chr2B 94.643 2128 70 20 731 2837 448323232 448325336 0.000000e+00 3258.0
5 TraesCS2A01G296700 chr2B 88.174 482 54 3 248 726 448322664 448323145 3.450000e-159 571.0
6 TraesCS2A01G296700 chr2B 89.062 128 9 5 2956 3080 448351759 448351884 1.480000e-33 154.0
7 TraesCS2A01G296700 chr6B 91.061 537 34 12 2376 2904 460540099 460539569 0.000000e+00 713.0
8 TraesCS2A01G296700 chr6B 91.045 536 35 12 2376 2904 471099937 471099408 0.000000e+00 712.0
9 TraesCS2A01G296700 chr6B 91.617 167 9 2 2178 2344 471100097 471099936 3.090000e-55 226.0
10 TraesCS2A01G296700 chr6B 89.820 167 10 1 2178 2344 460540257 460540098 1.120000e-49 207.0
11 TraesCS2A01G296700 chr5D 91.271 527 33 12 2376 2895 511597584 511598104 0.000000e+00 706.0
12 TraesCS2A01G296700 chr5D 95.397 239 11 0 10 248 306263770 306263532 6.230000e-102 381.0
13 TraesCS2A01G296700 chr5D 93.413 167 6 2 2178 2344 511597424 511597585 3.070000e-60 243.0
14 TraesCS2A01G296700 chr6A 95.547 247 11 0 1 247 207760894 207761140 2.230000e-106 396.0
15 TraesCS2A01G296700 chr6A 94.737 247 13 0 1 247 337755372 337755126 4.820000e-103 385.0
16 TraesCS2A01G296700 chr5A 94.779 249 13 0 1 249 430815015 430815263 3.720000e-104 388.0
17 TraesCS2A01G296700 chr5A 94.378 249 12 1 1 247 479177497 479177745 6.230000e-102 381.0
18 TraesCS2A01G296700 chr7D 94.737 247 13 0 1 247 133845354 133845108 4.820000e-103 385.0
19 TraesCS2A01G296700 chr7D 94.355 248 14 0 1 248 216069996 216070243 6.230000e-102 381.0
20 TraesCS2A01G296700 chr1A 94.422 251 12 2 1 250 332487289 332487040 4.820000e-103 385.0
21 TraesCS2A01G296700 chr6D 94.378 249 12 2 1 248 163097174 163097421 6.230000e-102 381.0
22 TraesCS2A01G296700 chr6D 80.114 176 29 6 2834 3008 384354624 384354454 3.220000e-25 126.0
23 TraesCS2A01G296700 chr7B 80.412 194 30 8 2815 3006 682888067 682887880 1.150000e-29 141.0
24 TraesCS2A01G296700 chr1B 80.000 190 34 4 2814 3000 604544688 604544876 1.490000e-28 137.0
25 TraesCS2A01G296700 chr1B 77.465 213 37 7 2814 3024 592843311 592843108 1.940000e-22 117.0
26 TraesCS2A01G296700 chr3D 85.393 89 12 1 2919 3006 313283281 313283193 1.180000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G296700 chr2A 510854566 510857645 3079 False 5688.0 5688 100.0000 1 3080 1 chr2A.!!$F1 3079
1 TraesCS2A01G296700 chr2D 376938275 376940707 2432 False 3452.0 3452 92.1660 600 3080 1 chr2D.!!$F1 2480
2 TraesCS2A01G296700 chr2B 448322664 448325336 2672 False 1914.5 3258 91.4085 248 2837 2 chr2B.!!$F2 2589
3 TraesCS2A01G296700 chr6B 471099408 471100097 689 True 469.0 712 91.3310 2178 2904 2 chr6B.!!$R2 726
4 TraesCS2A01G296700 chr6B 460539569 460540257 688 True 460.0 713 90.4405 2178 2904 2 chr6B.!!$R1 726
5 TraesCS2A01G296700 chr5D 511597424 511598104 680 False 474.5 706 92.3420 2178 2895 2 chr5D.!!$F1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 557 0.039618 ACCACCCATTGTCCCACATC 59.960 55.0 0.0 0.0 0.0 3.06 F
914 1004 0.252927 CCCCACTTCTTCTCCCTCCT 60.253 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1765 0.036388 TGATGTCTTCGGTCTTGCCC 60.036 55.000 0.00 0.0 0.0 5.36 R
2312 2419 1.066573 GCAGGCTAGCAACAGAGAGAA 60.067 52.381 18.24 0.0 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.440065 CGCTGCCTTGGCCCATTA 60.440 61.111 9.35 0.00 0.00 1.90
18 19 2.484062 CGCTGCCTTGGCCCATTAG 61.484 63.158 9.35 0.49 0.00 1.73
19 20 2.129785 GCTGCCTTGGCCCATTAGG 61.130 63.158 9.35 2.84 39.47 2.69
20 21 1.307647 CTGCCTTGGCCCATTAGGT 59.692 57.895 9.35 0.00 38.26 3.08
21 22 1.000233 TGCCTTGGCCCATTAGGTG 60.000 57.895 9.35 0.00 38.26 4.00
22 23 1.000359 GCCTTGGCCCATTAGGTGT 60.000 57.895 0.00 0.00 38.26 4.16
23 24 1.037579 GCCTTGGCCCATTAGGTGTC 61.038 60.000 0.00 0.00 38.26 3.67
24 25 0.625849 CCTTGGCCCATTAGGTGTCT 59.374 55.000 0.00 0.00 38.26 3.41
25 26 1.005924 CCTTGGCCCATTAGGTGTCTT 59.994 52.381 0.00 0.00 38.26 3.01
26 27 2.369394 CTTGGCCCATTAGGTGTCTTC 58.631 52.381 0.00 0.00 38.26 2.87
27 28 1.668826 TGGCCCATTAGGTGTCTTCT 58.331 50.000 0.00 0.00 38.26 2.85
28 29 1.281867 TGGCCCATTAGGTGTCTTCTG 59.718 52.381 0.00 0.00 38.26 3.02
29 30 1.408822 GGCCCATTAGGTGTCTTCTGG 60.409 57.143 0.00 0.00 38.26 3.86
30 31 1.282157 GCCCATTAGGTGTCTTCTGGT 59.718 52.381 0.00 0.00 38.26 4.00
31 32 2.681097 GCCCATTAGGTGTCTTCTGGTC 60.681 54.545 0.00 0.00 38.26 4.02
32 33 2.418746 CCCATTAGGTGTCTTCTGGTCG 60.419 54.545 0.00 0.00 0.00 4.79
33 34 2.496070 CCATTAGGTGTCTTCTGGTCGA 59.504 50.000 0.00 0.00 0.00 4.20
34 35 3.133003 CCATTAGGTGTCTTCTGGTCGAT 59.867 47.826 0.00 0.00 0.00 3.59
35 36 4.341235 CCATTAGGTGTCTTCTGGTCGATA 59.659 45.833 0.00 0.00 0.00 2.92
36 37 5.163447 CCATTAGGTGTCTTCTGGTCGATAA 60.163 44.000 0.00 0.00 0.00 1.75
37 38 5.988310 TTAGGTGTCTTCTGGTCGATAAA 57.012 39.130 0.00 0.00 0.00 1.40
38 39 4.884668 AGGTGTCTTCTGGTCGATAAAA 57.115 40.909 0.00 0.00 0.00 1.52
39 40 5.223449 AGGTGTCTTCTGGTCGATAAAAA 57.777 39.130 0.00 0.00 0.00 1.94
58 59 5.684550 AAAAATCTCCGTAAAGTTTCGCT 57.315 34.783 0.00 0.00 0.00 4.93
59 60 4.663636 AAATCTCCGTAAAGTTTCGCTG 57.336 40.909 0.00 0.00 0.00 5.18
60 61 1.425412 TCTCCGTAAAGTTTCGCTGC 58.575 50.000 0.00 0.00 0.00 5.25
61 62 1.144969 CTCCGTAAAGTTTCGCTGCA 58.855 50.000 0.00 0.00 0.00 4.41
62 63 1.732259 CTCCGTAAAGTTTCGCTGCAT 59.268 47.619 0.00 0.00 0.00 3.96
63 64 2.147958 TCCGTAAAGTTTCGCTGCATT 58.852 42.857 0.00 0.00 0.00 3.56
64 65 2.550606 TCCGTAAAGTTTCGCTGCATTT 59.449 40.909 0.00 0.00 0.00 2.32
65 66 2.656422 CCGTAAAGTTTCGCTGCATTTG 59.344 45.455 0.00 0.00 0.00 2.32
66 67 2.656422 CGTAAAGTTTCGCTGCATTTGG 59.344 45.455 0.00 0.00 0.00 3.28
67 68 3.608241 CGTAAAGTTTCGCTGCATTTGGA 60.608 43.478 0.00 0.00 0.00 3.53
68 69 2.422276 AAGTTTCGCTGCATTTGGAC 57.578 45.000 0.00 0.00 0.00 4.02
69 70 1.609208 AGTTTCGCTGCATTTGGACT 58.391 45.000 0.00 0.00 0.00 3.85
70 71 1.537202 AGTTTCGCTGCATTTGGACTC 59.463 47.619 0.00 0.00 0.00 3.36
71 72 0.881118 TTTCGCTGCATTTGGACTCC 59.119 50.000 0.00 0.00 0.00 3.85
72 73 1.298157 TTCGCTGCATTTGGACTCCG 61.298 55.000 0.00 0.00 0.00 4.63
73 74 2.034879 CGCTGCATTTGGACTCCGT 61.035 57.895 0.00 0.00 0.00 4.69
74 75 1.577328 CGCTGCATTTGGACTCCGTT 61.577 55.000 0.00 0.00 0.00 4.44
75 76 0.598065 GCTGCATTTGGACTCCGTTT 59.402 50.000 0.00 0.00 0.00 3.60
76 77 1.666888 GCTGCATTTGGACTCCGTTTG 60.667 52.381 0.00 0.00 0.00 2.93
77 78 0.958091 TGCATTTGGACTCCGTTTGG 59.042 50.000 0.00 0.00 0.00 3.28
78 79 0.958822 GCATTTGGACTCCGTTTGGT 59.041 50.000 0.00 0.00 36.30 3.67
79 80 2.156098 GCATTTGGACTCCGTTTGGTA 58.844 47.619 0.00 0.00 36.30 3.25
80 81 2.752903 GCATTTGGACTCCGTTTGGTAT 59.247 45.455 0.00 0.00 36.30 2.73
81 82 3.192633 GCATTTGGACTCCGTTTGGTATT 59.807 43.478 0.00 0.00 36.30 1.89
82 83 4.732784 CATTTGGACTCCGTTTGGTATTG 58.267 43.478 0.00 0.00 36.30 1.90
83 84 3.773418 TTGGACTCCGTTTGGTATTGA 57.227 42.857 0.00 0.00 36.30 2.57
84 85 3.992943 TGGACTCCGTTTGGTATTGAT 57.007 42.857 0.00 0.00 36.30 2.57
85 86 4.295141 TGGACTCCGTTTGGTATTGATT 57.705 40.909 0.00 0.00 36.30 2.57
86 87 4.658063 TGGACTCCGTTTGGTATTGATTT 58.342 39.130 0.00 0.00 36.30 2.17
87 88 5.074115 TGGACTCCGTTTGGTATTGATTTT 58.926 37.500 0.00 0.00 36.30 1.82
88 89 5.182380 TGGACTCCGTTTGGTATTGATTTTC 59.818 40.000 0.00 0.00 36.30 2.29
89 90 5.414765 GGACTCCGTTTGGTATTGATTTTCT 59.585 40.000 0.00 0.00 36.30 2.52
90 91 6.254281 ACTCCGTTTGGTATTGATTTTCTG 57.746 37.500 0.00 0.00 36.30 3.02
91 92 5.054390 TCCGTTTGGTATTGATTTTCTGC 57.946 39.130 0.00 0.00 36.30 4.26
92 93 3.851403 CCGTTTGGTATTGATTTTCTGCG 59.149 43.478 0.00 0.00 0.00 5.18
93 94 4.378978 CCGTTTGGTATTGATTTTCTGCGA 60.379 41.667 0.00 0.00 0.00 5.10
94 95 5.331902 CGTTTGGTATTGATTTTCTGCGAT 58.668 37.500 0.00 0.00 0.00 4.58
95 96 5.227805 CGTTTGGTATTGATTTTCTGCGATG 59.772 40.000 0.00 0.00 0.00 3.84
96 97 5.895636 TTGGTATTGATTTTCTGCGATGT 57.104 34.783 0.00 0.00 0.00 3.06
97 98 6.993786 TTGGTATTGATTTTCTGCGATGTA 57.006 33.333 0.00 0.00 0.00 2.29
98 99 6.993786 TGGTATTGATTTTCTGCGATGTAA 57.006 33.333 0.00 0.00 0.00 2.41
99 100 7.384439 TGGTATTGATTTTCTGCGATGTAAA 57.616 32.000 0.00 0.00 0.00 2.01
100 101 7.821652 TGGTATTGATTTTCTGCGATGTAAAA 58.178 30.769 0.00 0.00 0.00 1.52
101 102 8.300286 TGGTATTGATTTTCTGCGATGTAAAAA 58.700 29.630 0.00 0.00 0.00 1.94
121 122 6.799926 AAAAACATGCAGAAAACAACAACT 57.200 29.167 0.00 0.00 0.00 3.16
122 123 5.783100 AAACATGCAGAAAACAACAACTG 57.217 34.783 0.00 0.00 0.00 3.16
123 124 4.717233 ACATGCAGAAAACAACAACTGA 57.283 36.364 0.00 0.00 32.90 3.41
124 125 4.423732 ACATGCAGAAAACAACAACTGAC 58.576 39.130 0.00 0.00 32.90 3.51
125 126 4.082300 ACATGCAGAAAACAACAACTGACA 60.082 37.500 0.00 0.00 32.90 3.58
126 127 3.832276 TGCAGAAAACAACAACTGACAC 58.168 40.909 0.00 0.00 32.90 3.67
127 128 3.505680 TGCAGAAAACAACAACTGACACT 59.494 39.130 0.00 0.00 32.90 3.55
128 129 4.022416 TGCAGAAAACAACAACTGACACTT 60.022 37.500 0.00 0.00 32.90 3.16
129 130 4.324402 GCAGAAAACAACAACTGACACTTG 59.676 41.667 0.00 0.00 32.90 3.16
130 131 4.858692 CAGAAAACAACAACTGACACTTGG 59.141 41.667 0.00 0.00 32.90 3.61
131 132 2.939460 AACAACAACTGACACTTGGC 57.061 45.000 0.79 0.00 0.00 4.52
132 133 1.832883 ACAACAACTGACACTTGGCA 58.167 45.000 0.79 0.00 0.00 4.92
133 134 1.472480 ACAACAACTGACACTTGGCAC 59.528 47.619 0.00 0.00 0.00 5.01
134 135 1.745087 CAACAACTGACACTTGGCACT 59.255 47.619 0.00 0.00 0.00 4.40
135 136 2.942376 CAACAACTGACACTTGGCACTA 59.058 45.455 0.00 0.00 0.00 2.74
136 137 3.492102 ACAACTGACACTTGGCACTAT 57.508 42.857 0.00 0.00 0.00 2.12
137 138 3.141398 ACAACTGACACTTGGCACTATG 58.859 45.455 0.00 0.00 0.00 2.23
138 139 3.141398 CAACTGACACTTGGCACTATGT 58.859 45.455 0.00 0.00 0.00 2.29
139 140 3.045601 ACTGACACTTGGCACTATGTC 57.954 47.619 14.84 14.84 41.51 3.06
140 141 2.368548 ACTGACACTTGGCACTATGTCA 59.631 45.455 20.35 20.35 46.92 3.58
141 142 3.483808 TGACACTTGGCACTATGTCAA 57.516 42.857 19.71 8.30 46.30 3.18
142 143 4.019792 TGACACTTGGCACTATGTCAAT 57.980 40.909 19.71 0.00 46.30 2.57
143 144 5.159273 TGACACTTGGCACTATGTCAATA 57.841 39.130 19.71 3.35 46.30 1.90
144 145 5.178061 TGACACTTGGCACTATGTCAATAG 58.822 41.667 19.71 0.39 46.30 1.73
145 146 4.517285 ACACTTGGCACTATGTCAATAGG 58.483 43.478 0.00 0.00 41.56 2.57
146 147 4.019321 ACACTTGGCACTATGTCAATAGGT 60.019 41.667 0.00 0.00 41.56 3.08
147 148 4.943705 CACTTGGCACTATGTCAATAGGTT 59.056 41.667 0.00 0.00 41.56 3.50
148 149 6.112734 CACTTGGCACTATGTCAATAGGTTA 58.887 40.000 0.00 0.00 41.56 2.85
149 150 6.258727 CACTTGGCACTATGTCAATAGGTTAG 59.741 42.308 0.00 0.00 41.56 2.34
150 151 5.950544 TGGCACTATGTCAATAGGTTAGT 57.049 39.130 0.00 0.00 40.23 2.24
151 152 7.125204 ACTTGGCACTATGTCAATAGGTTAGTA 59.875 37.037 0.00 0.00 41.56 1.82
152 153 6.812998 TGGCACTATGTCAATAGGTTAGTAC 58.187 40.000 0.00 0.00 40.23 2.73
153 154 6.183360 TGGCACTATGTCAATAGGTTAGTACC 60.183 42.308 0.00 0.00 45.39 3.34
250 251 2.933495 CGTTGAAGACGTATCAGGGA 57.067 50.000 4.00 0.00 46.49 4.20
257 258 2.240279 AGACGTATCAGGGATAGGTGC 58.760 52.381 14.21 7.80 41.61 5.01
300 301 7.470147 CGCTAGTTCCTTATATCTCCTTGTCAA 60.470 40.741 0.00 0.00 0.00 3.18
303 304 8.970859 AGTTCCTTATATCTCCTTGTCAATTG 57.029 34.615 0.00 0.00 0.00 2.32
314 315 2.034999 TCAATTGGTCCACCGCCC 59.965 61.111 5.42 0.00 39.43 6.13
320 321 2.446036 GGTCCACCGCCCCTCTAT 60.446 66.667 0.00 0.00 0.00 1.98
322 323 2.122989 TCCACCGCCCCTCTATCC 60.123 66.667 0.00 0.00 0.00 2.59
346 347 1.693640 CTTGGACAAGGGCCTCCAT 59.306 57.895 13.27 0.00 36.42 3.41
350 351 1.384191 GACAAGGGCCTCCATGGTT 59.616 57.895 6.46 0.00 36.15 3.67
359 360 2.833943 GGCCTCCATGGTTGAAAGAATT 59.166 45.455 12.58 0.00 38.35 2.17
362 363 4.381292 GCCTCCATGGTTGAAAGAATTCAG 60.381 45.833 12.58 0.00 40.44 3.02
364 365 5.105997 CCTCCATGGTTGAAAGAATTCAGAC 60.106 44.000 12.58 0.00 45.82 3.51
386 387 7.063898 CAGACATTTTATAGATAGCATCGGTGG 59.936 40.741 0.00 0.00 0.00 4.61
387 388 5.643777 ACATTTTATAGATAGCATCGGTGGC 59.356 40.000 0.00 0.00 0.00 5.01
401 402 1.405105 CGGTGGCCATGTTAGGAAATG 59.595 52.381 9.72 0.00 0.00 2.32
415 416 6.883756 TGTTAGGAAATGTATGCTCAATCACA 59.116 34.615 0.00 0.00 0.00 3.58
421 422 7.395190 AAATGTATGCTCAATCACAAGCTTA 57.605 32.000 0.00 0.00 39.31 3.09
436 437 7.573710 TCACAAGCTTATTCCTAATACACCAT 58.426 34.615 0.00 0.00 0.00 3.55
438 439 8.993121 CACAAGCTTATTCCTAATACACCATAG 58.007 37.037 0.00 0.00 0.00 2.23
445 446 4.157246 TCCTAATACACCATAGCGACCAT 58.843 43.478 0.00 0.00 0.00 3.55
446 447 4.021456 TCCTAATACACCATAGCGACCATG 60.021 45.833 0.00 0.00 0.00 3.66
447 448 2.169832 ATACACCATAGCGACCATGC 57.830 50.000 0.00 0.00 0.00 4.06
452 453 0.179048 CCATAGCGACCATGCCAAGA 60.179 55.000 0.00 0.00 34.65 3.02
491 492 0.810031 CAATCTACGAACCTGGCCCG 60.810 60.000 0.00 0.00 0.00 6.13
500 501 4.559063 CCTGGCCCGAGCATCCAG 62.559 72.222 0.00 0.00 45.24 3.86
507 508 0.179089 CCCGAGCATCCAGACAAGAG 60.179 60.000 0.00 0.00 0.00 2.85
508 509 0.809241 CCGAGCATCCAGACAAGAGC 60.809 60.000 0.00 0.00 0.00 4.09
520 521 2.968574 AGACAAGAGCTGGAAGAACTCA 59.031 45.455 0.00 0.00 34.07 3.41
523 524 1.274712 AGAGCTGGAAGAACTCAGGG 58.725 55.000 0.00 0.00 34.07 4.45
555 556 0.251742 CACCACCCATTGTCCCACAT 60.252 55.000 0.00 0.00 0.00 3.21
556 557 0.039618 ACCACCCATTGTCCCACATC 59.960 55.000 0.00 0.00 0.00 3.06
563 565 2.009774 CATTGTCCCACATCTCCGAAC 58.990 52.381 0.00 0.00 0.00 3.95
565 567 1.153628 GTCCCACATCTCCGAACGG 60.154 63.158 6.94 6.94 0.00 4.44
587 589 5.334105 CGGCAGTTTTAGTGTATCCATATGC 60.334 44.000 0.00 0.00 0.00 3.14
598 600 7.512130 AGTGTATCCATATGCTCTGAAATTCA 58.488 34.615 0.00 0.00 0.00 2.57
672 675 4.981806 TTTTTGAGTCCTGTGTTCCAAG 57.018 40.909 0.00 0.00 0.00 3.61
690 695 3.573967 CCAAGCTGGGTCTTATGTTTGTT 59.426 43.478 0.00 0.00 32.67 2.83
742 830 9.367444 CTATGTACTACCAATCTTTTCTCGTTT 57.633 33.333 0.00 0.00 0.00 3.60
767 855 9.754382 TTCTACAGTTCTGTAACTAAATTTCGT 57.246 29.630 12.71 0.00 44.28 3.85
866 954 4.410883 TCTTTACTGAAACCTCTCCAACCA 59.589 41.667 0.00 0.00 0.00 3.67
913 1003 1.916206 GCCCCACTTCTTCTCCCTCC 61.916 65.000 0.00 0.00 0.00 4.30
914 1004 0.252927 CCCCACTTCTTCTCCCTCCT 60.253 60.000 0.00 0.00 0.00 3.69
1437 1534 4.147449 CAGGCTGCCGTGGATCGA 62.147 66.667 13.96 0.00 42.86 3.59
1596 1693 6.087522 GCCTTGTAGTATTACTATCTGAGCG 58.912 44.000 6.82 0.00 32.65 5.03
1627 1724 6.653020 TGATAATGATACCAGTTGAAGCACT 58.347 36.000 0.00 0.00 0.00 4.40
1628 1725 6.539826 TGATAATGATACCAGTTGAAGCACTG 59.460 38.462 0.00 0.00 43.46 3.66
1629 1726 3.769739 TGATACCAGTTGAAGCACTGT 57.230 42.857 1.72 0.00 42.45 3.55
1630 1727 4.085357 TGATACCAGTTGAAGCACTGTT 57.915 40.909 1.72 0.00 42.45 3.16
1631 1728 5.222079 TGATACCAGTTGAAGCACTGTTA 57.778 39.130 1.72 0.00 42.45 2.41
1632 1729 5.616270 TGATACCAGTTGAAGCACTGTTAA 58.384 37.500 1.72 0.00 42.45 2.01
1633 1730 5.700832 TGATACCAGTTGAAGCACTGTTAAG 59.299 40.000 1.72 0.00 42.45 1.85
1812 1909 2.900546 GGTATCAATGGAGTCGGAGGAT 59.099 50.000 0.00 0.00 0.00 3.24
1969 2066 3.220999 TTCGTGGACCTGCTCGTGG 62.221 63.158 0.00 0.00 0.00 4.94
2099 2196 5.335191 GCTGATCAGGAACTCGTTTTGATTT 60.335 40.000 23.89 0.00 34.60 2.17
2101 2198 5.762711 TGATCAGGAACTCGTTTTGATTTCA 59.237 36.000 0.00 5.50 37.85 2.69
2173 2273 4.168760 GTTGAATATTTGTGAGCTGGTGC 58.831 43.478 0.00 0.00 40.05 5.01
2370 2483 5.948992 AAAGTGAGCCAACTCTGATTAAC 57.051 39.130 0.00 0.00 43.85 2.01
2461 2574 2.611518 CAGCTTTCTTGAGTAGGTCCG 58.388 52.381 0.00 0.00 0.00 4.79
2554 2671 2.164338 TCCGGTTTCCCTTTAATGCAC 58.836 47.619 0.00 0.00 0.00 4.57
2893 3012 8.863872 TGACATGTATCTCGATTCTTATAGGA 57.136 34.615 0.00 0.00 0.00 2.94
2995 3120 8.798975 AAAGATTGGTTCCTATCCTACATAGA 57.201 34.615 9.04 0.00 0.00 1.98
3001 3126 8.666129 TGGTTCCTATCCTACATAGAAATAGG 57.334 38.462 14.95 14.95 38.73 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.440065 TAATGGGCCAAGGCAGCG 60.440 61.111 11.89 0.00 44.11 5.18
1 2 2.129785 CCTAATGGGCCAAGGCAGC 61.130 63.158 11.89 0.00 44.11 5.25
2 3 1.039233 CACCTAATGGGCCAAGGCAG 61.039 60.000 21.78 12.34 44.11 4.85
3 4 1.000233 CACCTAATGGGCCAAGGCA 60.000 57.895 21.78 2.20 44.11 4.75
4 5 1.000359 ACACCTAATGGGCCAAGGC 60.000 57.895 21.78 1.52 39.10 4.35
5 6 0.625849 AGACACCTAATGGGCCAAGG 59.374 55.000 20.53 20.53 39.10 3.61
6 7 2.025887 AGAAGACACCTAATGGGCCAAG 60.026 50.000 11.89 3.78 39.10 3.61
7 8 1.992557 AGAAGACACCTAATGGGCCAA 59.007 47.619 11.89 0.00 39.10 4.52
8 9 1.281867 CAGAAGACACCTAATGGGCCA 59.718 52.381 9.61 9.61 39.10 5.36
9 10 1.408822 CCAGAAGACACCTAATGGGCC 60.409 57.143 0.00 0.00 39.10 5.80
10 11 1.282157 ACCAGAAGACACCTAATGGGC 59.718 52.381 0.00 0.00 39.10 5.36
11 12 2.418746 CGACCAGAAGACACCTAATGGG 60.419 54.545 0.00 0.00 41.89 4.00
12 13 2.496070 TCGACCAGAAGACACCTAATGG 59.504 50.000 0.00 0.00 35.41 3.16
13 14 3.868757 TCGACCAGAAGACACCTAATG 57.131 47.619 0.00 0.00 0.00 1.90
14 15 6.540438 TTTATCGACCAGAAGACACCTAAT 57.460 37.500 0.00 0.00 0.00 1.73
15 16 5.988310 TTTATCGACCAGAAGACACCTAA 57.012 39.130 0.00 0.00 0.00 2.69
16 17 5.988310 TTTTATCGACCAGAAGACACCTA 57.012 39.130 0.00 0.00 0.00 3.08
17 18 4.884668 TTTTATCGACCAGAAGACACCT 57.115 40.909 0.00 0.00 0.00 4.00
36 37 5.449304 CAGCGAAACTTTACGGAGATTTTT 58.551 37.500 0.00 0.00 0.00 1.94
37 38 4.612939 GCAGCGAAACTTTACGGAGATTTT 60.613 41.667 0.00 0.00 0.00 1.82
38 39 3.120304 GCAGCGAAACTTTACGGAGATTT 60.120 43.478 0.00 0.00 0.00 2.17
39 40 2.415512 GCAGCGAAACTTTACGGAGATT 59.584 45.455 0.00 0.00 0.00 2.40
40 41 2.000447 GCAGCGAAACTTTACGGAGAT 59.000 47.619 0.00 0.00 0.00 2.75
41 42 1.269883 TGCAGCGAAACTTTACGGAGA 60.270 47.619 0.00 0.00 0.00 3.71
42 43 1.144969 TGCAGCGAAACTTTACGGAG 58.855 50.000 0.00 0.00 0.00 4.63
43 44 1.803334 ATGCAGCGAAACTTTACGGA 58.197 45.000 0.00 0.00 0.00 4.69
44 45 2.611974 AATGCAGCGAAACTTTACGG 57.388 45.000 0.00 0.00 0.00 4.02
45 46 2.656422 CCAAATGCAGCGAAACTTTACG 59.344 45.455 0.00 0.00 0.00 3.18
46 47 3.668656 GTCCAAATGCAGCGAAACTTTAC 59.331 43.478 0.00 0.00 0.00 2.01
47 48 3.568007 AGTCCAAATGCAGCGAAACTTTA 59.432 39.130 0.00 0.00 0.00 1.85
48 49 2.362077 AGTCCAAATGCAGCGAAACTTT 59.638 40.909 0.00 0.00 0.00 2.66
49 50 1.956477 AGTCCAAATGCAGCGAAACTT 59.044 42.857 0.00 0.00 0.00 2.66
50 51 1.537202 GAGTCCAAATGCAGCGAAACT 59.463 47.619 0.00 0.00 0.00 2.66
51 52 1.401539 GGAGTCCAAATGCAGCGAAAC 60.402 52.381 3.60 0.00 0.00 2.78
52 53 0.881118 GGAGTCCAAATGCAGCGAAA 59.119 50.000 3.60 0.00 0.00 3.46
53 54 1.298157 CGGAGTCCAAATGCAGCGAA 61.298 55.000 10.49 0.00 0.00 4.70
54 55 1.741401 CGGAGTCCAAATGCAGCGA 60.741 57.895 10.49 0.00 0.00 4.93
55 56 1.577328 AACGGAGTCCAAATGCAGCG 61.577 55.000 10.49 0.00 45.00 5.18
56 57 0.598065 AAACGGAGTCCAAATGCAGC 59.402 50.000 10.49 0.00 45.00 5.25
57 58 1.068333 CCAAACGGAGTCCAAATGCAG 60.068 52.381 10.49 0.00 45.00 4.41
58 59 0.958091 CCAAACGGAGTCCAAATGCA 59.042 50.000 10.49 0.00 45.00 3.96
59 60 0.958822 ACCAAACGGAGTCCAAATGC 59.041 50.000 10.49 0.00 45.00 3.56
60 61 4.457603 TCAATACCAAACGGAGTCCAAATG 59.542 41.667 10.49 4.10 45.00 2.32
61 62 4.658063 TCAATACCAAACGGAGTCCAAAT 58.342 39.130 10.49 0.00 45.00 2.32
62 63 4.088056 TCAATACCAAACGGAGTCCAAA 57.912 40.909 10.49 0.00 45.00 3.28
63 64 3.773418 TCAATACCAAACGGAGTCCAA 57.227 42.857 10.49 0.00 45.00 3.53
64 65 3.992943 ATCAATACCAAACGGAGTCCA 57.007 42.857 10.49 0.00 45.00 4.02
65 66 5.414765 AGAAAATCAATACCAAACGGAGTCC 59.585 40.000 0.00 0.00 45.00 3.85
66 67 6.314784 CAGAAAATCAATACCAAACGGAGTC 58.685 40.000 0.00 0.00 45.00 3.36
68 69 5.095490 GCAGAAAATCAATACCAAACGGAG 58.905 41.667 0.00 0.00 0.00 4.63
69 70 4.378978 CGCAGAAAATCAATACCAAACGGA 60.379 41.667 0.00 0.00 0.00 4.69
70 71 3.851403 CGCAGAAAATCAATACCAAACGG 59.149 43.478 0.00 0.00 0.00 4.44
71 72 4.717991 TCGCAGAAAATCAATACCAAACG 58.282 39.130 0.00 0.00 0.00 3.60
72 73 6.092748 ACATCGCAGAAAATCAATACCAAAC 58.907 36.000 0.00 0.00 43.58 2.93
73 74 6.266168 ACATCGCAGAAAATCAATACCAAA 57.734 33.333 0.00 0.00 43.58 3.28
74 75 5.895636 ACATCGCAGAAAATCAATACCAA 57.104 34.783 0.00 0.00 43.58 3.67
75 76 6.993786 TTACATCGCAGAAAATCAATACCA 57.006 33.333 0.00 0.00 43.58 3.25
76 77 8.682128 TTTTTACATCGCAGAAAATCAATACC 57.318 30.769 0.00 0.00 43.58 2.73
98 99 6.426328 TCAGTTGTTGTTTTCTGCATGTTTTT 59.574 30.769 0.00 0.00 0.00 1.94
99 100 5.931146 TCAGTTGTTGTTTTCTGCATGTTTT 59.069 32.000 0.00 0.00 0.00 2.43
100 101 5.348451 GTCAGTTGTTGTTTTCTGCATGTTT 59.652 36.000 0.00 0.00 0.00 2.83
101 102 4.864247 GTCAGTTGTTGTTTTCTGCATGTT 59.136 37.500 0.00 0.00 0.00 2.71
102 103 4.082300 TGTCAGTTGTTGTTTTCTGCATGT 60.082 37.500 0.00 0.00 0.00 3.21
103 104 4.266029 GTGTCAGTTGTTGTTTTCTGCATG 59.734 41.667 0.00 0.00 0.00 4.06
104 105 4.158394 AGTGTCAGTTGTTGTTTTCTGCAT 59.842 37.500 0.00 0.00 0.00 3.96
105 106 3.505680 AGTGTCAGTTGTTGTTTTCTGCA 59.494 39.130 0.00 0.00 0.00 4.41
106 107 4.096732 AGTGTCAGTTGTTGTTTTCTGC 57.903 40.909 0.00 0.00 0.00 4.26
107 108 4.858692 CCAAGTGTCAGTTGTTGTTTTCTG 59.141 41.667 17.25 0.00 0.00 3.02
108 109 4.618227 GCCAAGTGTCAGTTGTTGTTTTCT 60.618 41.667 17.25 0.00 0.00 2.52
109 110 3.612423 GCCAAGTGTCAGTTGTTGTTTTC 59.388 43.478 17.25 0.00 0.00 2.29
110 111 3.006323 TGCCAAGTGTCAGTTGTTGTTTT 59.994 39.130 17.25 0.00 0.00 2.43
111 112 2.560542 TGCCAAGTGTCAGTTGTTGTTT 59.439 40.909 17.25 0.00 0.00 2.83
112 113 2.094752 GTGCCAAGTGTCAGTTGTTGTT 60.095 45.455 17.25 0.00 0.00 2.83
113 114 1.472480 GTGCCAAGTGTCAGTTGTTGT 59.528 47.619 17.25 0.00 0.00 3.32
114 115 1.745087 AGTGCCAAGTGTCAGTTGTTG 59.255 47.619 17.25 6.09 0.00 3.33
115 116 2.128771 AGTGCCAAGTGTCAGTTGTT 57.871 45.000 17.25 0.32 0.00 2.83
116 117 3.141398 CATAGTGCCAAGTGTCAGTTGT 58.859 45.455 17.25 3.63 0.00 3.32
117 118 3.141398 ACATAGTGCCAAGTGTCAGTTG 58.859 45.455 12.72 12.72 0.00 3.16
118 119 3.181455 TGACATAGTGCCAAGTGTCAGTT 60.181 43.478 3.18 0.00 44.14 3.16
119 120 2.368548 TGACATAGTGCCAAGTGTCAGT 59.631 45.455 3.18 0.00 44.14 3.41
120 121 3.044235 TGACATAGTGCCAAGTGTCAG 57.956 47.619 3.18 0.00 44.14 3.51
121 122 3.483808 TTGACATAGTGCCAAGTGTCA 57.516 42.857 3.18 3.18 46.44 3.58
122 123 4.572389 CCTATTGACATAGTGCCAAGTGTC 59.428 45.833 0.00 0.00 40.93 3.67
123 124 4.019321 ACCTATTGACATAGTGCCAAGTGT 60.019 41.667 0.00 0.00 31.64 3.55
124 125 4.517285 ACCTATTGACATAGTGCCAAGTG 58.483 43.478 0.00 0.00 31.64 3.16
125 126 4.844349 ACCTATTGACATAGTGCCAAGT 57.156 40.909 0.00 0.00 31.64 3.16
126 127 6.349300 ACTAACCTATTGACATAGTGCCAAG 58.651 40.000 0.00 0.00 31.64 3.61
127 128 6.308015 ACTAACCTATTGACATAGTGCCAA 57.692 37.500 0.00 0.00 31.64 4.52
128 129 5.950544 ACTAACCTATTGACATAGTGCCA 57.049 39.130 0.00 0.00 31.64 4.92
129 130 6.183360 TGGTACTAACCTATTGACATAGTGCC 60.183 42.308 10.27 10.27 46.91 5.01
130 131 6.812998 TGGTACTAACCTATTGACATAGTGC 58.187 40.000 0.00 0.00 46.91 4.40
131 132 8.234136 TCTGGTACTAACCTATTGACATAGTG 57.766 38.462 0.00 0.00 46.91 2.74
132 133 8.834004 TTCTGGTACTAACCTATTGACATAGT 57.166 34.615 0.00 0.00 46.91 2.12
135 136 9.396022 CATTTTCTGGTACTAACCTATTGACAT 57.604 33.333 0.00 0.00 46.91 3.06
136 137 8.598916 TCATTTTCTGGTACTAACCTATTGACA 58.401 33.333 0.00 0.00 46.91 3.58
137 138 9.614792 ATCATTTTCTGGTACTAACCTATTGAC 57.385 33.333 0.00 0.00 46.91 3.18
187 188 9.797642 TGTTCCATGCTGTTATATTATCAATCT 57.202 29.630 0.00 0.00 0.00 2.40
191 192 9.571816 TGATTGTTCCATGCTGTTATATTATCA 57.428 29.630 0.00 0.00 0.00 2.15
195 196 9.941325 TTTTTGATTGTTCCATGCTGTTATATT 57.059 25.926 0.00 0.00 0.00 1.28
197 198 9.941325 AATTTTTGATTGTTCCATGCTGTTATA 57.059 25.926 0.00 0.00 0.00 0.98
198 199 8.851541 AATTTTTGATTGTTCCATGCTGTTAT 57.148 26.923 0.00 0.00 0.00 1.89
199 200 9.941325 ATAATTTTTGATTGTTCCATGCTGTTA 57.059 25.926 0.00 0.00 0.00 2.41
200 201 8.851541 ATAATTTTTGATTGTTCCATGCTGTT 57.148 26.923 0.00 0.00 0.00 3.16
201 202 9.941325 TTATAATTTTTGATTGTTCCATGCTGT 57.059 25.926 0.00 0.00 0.00 4.40
232 233 4.341520 ACCTATCCCTGATACGTCTTCAAC 59.658 45.833 0.00 0.00 0.00 3.18
233 234 4.341235 CACCTATCCCTGATACGTCTTCAA 59.659 45.833 0.00 0.00 0.00 2.69
234 235 3.889538 CACCTATCCCTGATACGTCTTCA 59.110 47.826 0.00 0.00 0.00 3.02
235 236 3.305471 GCACCTATCCCTGATACGTCTTC 60.305 52.174 0.00 0.00 0.00 2.87
236 237 2.628657 GCACCTATCCCTGATACGTCTT 59.371 50.000 0.00 0.00 0.00 3.01
237 238 2.240279 GCACCTATCCCTGATACGTCT 58.760 52.381 0.00 0.00 0.00 4.18
238 239 1.272769 GGCACCTATCCCTGATACGTC 59.727 57.143 0.00 0.00 0.00 4.34
239 240 1.339097 GGCACCTATCCCTGATACGT 58.661 55.000 0.00 0.00 0.00 3.57
269 270 4.408276 AGATATAAGGAACTAGCGGCTCA 58.592 43.478 5.39 0.00 38.49 4.26
270 271 4.142337 GGAGATATAAGGAACTAGCGGCTC 60.142 50.000 5.39 0.00 38.49 4.70
300 301 2.833151 TAGAGGGGCGGTGGACCAAT 62.833 60.000 0.00 0.00 46.61 3.16
303 304 2.446036 ATAGAGGGGCGGTGGACC 60.446 66.667 0.00 0.00 42.56 4.46
314 315 2.029666 CAAGCGGCGGGATAGAGG 59.970 66.667 9.78 0.00 0.00 3.69
320 321 4.697756 CTTGTCCAAGCGGCGGGA 62.698 66.667 9.78 11.61 0.00 5.14
327 328 2.361737 GGAGGCCCTTGTCCAAGC 60.362 66.667 0.00 0.00 37.11 4.01
359 360 7.814587 CACCGATGCTATCTATAAAATGTCTGA 59.185 37.037 0.00 0.00 0.00 3.27
362 363 6.183360 GCCACCGATGCTATCTATAAAATGTC 60.183 42.308 0.00 0.00 0.00 3.06
364 365 5.065218 GGCCACCGATGCTATCTATAAAATG 59.935 44.000 0.00 0.00 0.00 2.32
379 380 0.916086 TTCCTAACATGGCCACCGAT 59.084 50.000 8.16 0.00 0.00 4.18
386 387 4.580167 TGAGCATACATTTCCTAACATGGC 59.420 41.667 0.00 0.00 0.00 4.40
387 388 6.698008 TTGAGCATACATTTCCTAACATGG 57.302 37.500 0.00 0.00 0.00 3.66
401 402 6.261826 AGGAATAAGCTTGTGATTGAGCATAC 59.738 38.462 9.86 0.00 41.31 2.39
415 416 6.874134 CGCTATGGTGTATTAGGAATAAGCTT 59.126 38.462 3.48 3.48 0.00 3.74
421 422 4.591498 TGGTCGCTATGGTGTATTAGGAAT 59.409 41.667 0.00 0.00 0.00 3.01
436 437 1.070134 GGTATCTTGGCATGGTCGCTA 59.930 52.381 0.00 0.00 0.00 4.26
438 439 0.463654 TGGTATCTTGGCATGGTCGC 60.464 55.000 0.00 0.00 0.00 5.19
445 446 3.513515 GGGTCAATTTTGGTATCTTGGCA 59.486 43.478 0.00 0.00 0.00 4.92
446 447 3.513515 TGGGTCAATTTTGGTATCTTGGC 59.486 43.478 0.00 0.00 0.00 4.52
447 448 5.187576 ACATGGGTCAATTTTGGTATCTTGG 59.812 40.000 0.00 0.00 0.00 3.61
491 492 1.654317 CAGCTCTTGTCTGGATGCTC 58.346 55.000 0.00 0.00 0.00 4.26
500 501 3.324993 CTGAGTTCTTCCAGCTCTTGTC 58.675 50.000 0.00 0.00 0.00 3.18
507 508 1.349357 ACTTCCCTGAGTTCTTCCAGC 59.651 52.381 0.00 0.00 0.00 4.85
508 509 3.778954 AACTTCCCTGAGTTCTTCCAG 57.221 47.619 0.00 0.00 34.94 3.86
513 514 3.328050 CCCAACTAACTTCCCTGAGTTCT 59.672 47.826 0.00 0.00 40.24 3.01
520 521 0.404426 GGTGCCCAACTAACTTCCCT 59.596 55.000 0.00 0.00 0.00 4.20
523 524 1.244816 GGTGGTGCCCAACTAACTTC 58.755 55.000 2.29 0.00 38.38 3.01
555 556 1.342174 ACTAAAACTGCCGTTCGGAGA 59.658 47.619 15.69 0.00 31.66 3.71
556 557 1.459592 CACTAAAACTGCCGTTCGGAG 59.540 52.381 15.69 11.30 31.66 4.63
598 600 6.525578 TGTCGTGTAATCTGAATTCCTACT 57.474 37.500 2.27 0.00 0.00 2.57
617 619 4.194640 ACATTGGAGGAATTCAGATGTCG 58.805 43.478 7.93 0.00 31.28 4.35
672 675 3.317150 GCAAACAAACATAAGACCCAGC 58.683 45.455 0.00 0.00 0.00 4.85
714 719 8.189460 ACGAGAAAAGATTGGTAGTACATAGAC 58.811 37.037 2.06 0.00 0.00 2.59
742 830 9.754382 AACGAAATTTAGTTACAGAACTGTAGA 57.246 29.630 14.12 4.48 45.74 2.59
783 871 1.962807 TGGCAACCACAAGAAATGAGG 59.037 47.619 0.00 0.00 44.59 3.86
809 897 5.156355 GCCATTGAATGTTATATTGGCTCG 58.844 41.667 4.27 0.00 43.68 5.03
866 954 2.092914 GGTAGTGAGCCCATTTACTGCT 60.093 50.000 0.00 0.00 38.24 4.24
913 1003 7.862372 TGTTTGTTTTGCTTGCTTTATAGAGAG 59.138 33.333 0.00 0.00 0.00 3.20
914 1004 7.711846 TGTTTGTTTTGCTTGCTTTATAGAGA 58.288 30.769 0.00 0.00 0.00 3.10
1096 1193 3.984732 GCCCTTCCTGGCCTTGGT 61.985 66.667 3.32 0.00 46.11 3.67
1418 1515 2.900273 GATCCACGGCAGCCTGTA 59.100 61.111 10.54 0.00 0.00 2.74
1567 1664 8.727910 TCAGATAGTAATACTACAAGGCATACG 58.272 37.037 1.76 0.00 32.84 3.06
1596 1693 8.853077 TCAACTGGTATCATTATCATTCATCC 57.147 34.615 0.00 0.00 0.00 3.51
1629 1726 9.917129 TGAAATATCTCTCGTGTTAACACTTAA 57.083 29.630 30.47 17.58 44.34 1.85
1630 1727 9.569167 CTGAAATATCTCTCGTGTTAACACTTA 57.431 33.333 30.47 19.70 44.34 2.24
1631 1728 7.545965 CCTGAAATATCTCTCGTGTTAACACTT 59.454 37.037 30.47 17.52 44.34 3.16
1632 1729 7.036220 CCTGAAATATCTCTCGTGTTAACACT 58.964 38.462 30.47 16.70 44.34 3.55
1633 1730 6.237861 GCCTGAAATATCTCTCGTGTTAACAC 60.238 42.308 25.73 25.73 43.15 3.32
1668 1765 0.036388 TGATGTCTTCGGTCTTGCCC 60.036 55.000 0.00 0.00 0.00 5.36
1812 1909 3.803082 CGGAAGTCGCCGTACGGA 61.803 66.667 37.62 15.62 46.07 4.69
1830 1927 4.241555 ATCTCCGCCATGGACGCC 62.242 66.667 18.40 0.00 43.74 5.68
2173 2273 5.601662 ACTGTACAATCATTCCATACCTCG 58.398 41.667 0.00 0.00 0.00 4.63
2294 2401 8.939929 CAGAGAGAACACAGCAAGAAAATAATA 58.060 33.333 0.00 0.00 0.00 0.98
2295 2402 7.446625 ACAGAGAGAACACAGCAAGAAAATAAT 59.553 33.333 0.00 0.00 0.00 1.28
2296 2403 6.767902 ACAGAGAGAACACAGCAAGAAAATAA 59.232 34.615 0.00 0.00 0.00 1.40
2297 2404 6.291377 ACAGAGAGAACACAGCAAGAAAATA 58.709 36.000 0.00 0.00 0.00 1.40
2298 2405 5.128919 ACAGAGAGAACACAGCAAGAAAAT 58.871 37.500 0.00 0.00 0.00 1.82
2312 2419 1.066573 GCAGGCTAGCAACAGAGAGAA 60.067 52.381 18.24 0.00 0.00 2.87
2370 2483 1.881973 CCGCCATGAATATGTCAAGGG 59.118 52.381 0.00 7.43 44.01 3.95
2414 2527 2.741930 GCTCTTGGCGCCAAAATTC 58.258 52.632 38.96 24.53 35.33 2.17
2461 2574 2.352342 TGGTTTGACTCGTTTTTCGTCC 59.648 45.455 0.00 0.00 40.80 4.79
2554 2671 2.302199 TATGAGCAGCTGGTGAGGCG 62.302 60.000 25.60 0.00 34.52 5.52
2933 3058 1.511613 AGCCATTAGCCTAGAGCCAA 58.488 50.000 0.00 0.00 45.47 4.52
2961 3086 8.966868 GGATAGGAACCAATCTTTCACATTTAA 58.033 33.333 0.00 0.00 0.00 1.52
2963 3088 7.184862 AGGATAGGAACCAATCTTTCACATTT 58.815 34.615 0.00 0.00 0.00 2.32
2966 3091 5.779241 AGGATAGGAACCAATCTTTCACA 57.221 39.130 0.00 0.00 0.00 3.58
2969 3094 8.871125 TCTATGTAGGATAGGAACCAATCTTTC 58.129 37.037 0.00 0.00 0.00 2.62
2970 3095 8.798975 TCTATGTAGGATAGGAACCAATCTTT 57.201 34.615 0.00 0.00 0.00 2.52
2971 3096 8.798975 TTCTATGTAGGATAGGAACCAATCTT 57.201 34.615 0.00 0.00 0.00 2.40
2972 3097 8.798975 TTTCTATGTAGGATAGGAACCAATCT 57.201 34.615 0.00 0.00 0.00 2.40
3040 3165 3.227614 GGAGGCTTTTGGTTTGTAGGAA 58.772 45.455 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.