Multiple sequence alignment - TraesCS2A01G296500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G296500 chr2A 100.000 3644 0 0 1 3644 510424569 510428212 0.000000e+00 6730.0
1 TraesCS2A01G296500 chr2A 91.810 232 18 1 1 232 580045688 580045918 4.540000e-84 322.0
2 TraesCS2A01G296500 chr2A 89.412 85 7 2 3482 3565 102118016 102117933 4.980000e-19 106.0
3 TraesCS2A01G296500 chr2A 88.158 76 8 1 801 876 754041799 754041725 5.010000e-14 89.8
4 TraesCS2A01G296500 chr2B 92.268 3298 154 47 218 3483 448112159 448115387 0.000000e+00 4584.0
5 TraesCS2A01G296500 chr2B 88.462 78 8 1 799 876 764146636 764146712 3.870000e-15 93.5
6 TraesCS2A01G296500 chr2D 92.802 3126 154 39 218 3321 376691124 376694200 0.000000e+00 4460.0
7 TraesCS2A01G296500 chr2D 90.588 85 4 3 3482 3565 507054419 507054338 3.850000e-20 110.0
8 TraesCS2A01G296500 chr7D 93.694 222 14 0 1 222 298354291 298354070 2.100000e-87 333.0
9 TraesCS2A01G296500 chr7D 84.615 65 8 2 497 559 436956507 436956443 3.040000e-06 63.9
10 TraesCS2A01G296500 chr1D 93.694 222 14 0 1 222 131289042 131289263 2.100000e-87 333.0
11 TraesCS2A01G296500 chr1D 96.341 82 2 1 3563 3644 394149971 394150051 2.280000e-27 134.0
12 TraesCS2A01G296500 chr3A 93.274 223 15 0 1 223 20305720 20305942 2.710000e-86 329.0
13 TraesCS2A01G296500 chr3A 96.341 82 2 1 3563 3644 544479099 544479179 2.280000e-27 134.0
14 TraesCS2A01G296500 chr7A 93.981 216 13 0 8 223 148505870 148506085 9.760000e-86 327.0
15 TraesCS2A01G296500 chr7A 80.851 188 30 5 498 682 669721336 669721152 3.790000e-30 143.0
16 TraesCS2A01G296500 chr6B 93.243 222 15 0 1 222 558338423 558338644 9.760000e-86 327.0
17 TraesCS2A01G296500 chr6B 90.476 84 7 1 3482 3565 40491265 40491347 3.850000e-20 110.0
18 TraesCS2A01G296500 chr6B 88.235 85 3 3 3482 3565 157944859 157944781 1.080000e-15 95.3
19 TraesCS2A01G296500 chr4D 92.576 229 15 2 8 235 44833810 44834037 9.760000e-86 327.0
20 TraesCS2A01G296500 chr4D 90.566 106 7 3 3539 3644 87621131 87621233 1.760000e-28 137.0
21 TraesCS2A01G296500 chr4D 89.744 78 7 1 3488 3565 333618840 333618764 8.330000e-17 99.0
22 TraesCS2A01G296500 chr3D 93.243 222 15 0 1 222 85882963 85882742 9.760000e-86 327.0
23 TraesCS2A01G296500 chr1A 92.444 225 17 0 1 225 329255320 329255096 4.540000e-84 322.0
24 TraesCS2A01G296500 chr1A 91.765 85 5 2 3482 3565 34270259 34270176 2.300000e-22 117.0
25 TraesCS2A01G296500 chr6D 96.341 82 2 1 3563 3644 431851253 431851173 2.280000e-27 134.0
26 TraesCS2A01G296500 chr4B 96.341 82 2 1 3563 3644 43676987 43676907 2.280000e-27 134.0
27 TraesCS2A01G296500 chr4B 96.341 82 2 1 3563 3644 169592615 169592695 2.280000e-27 134.0
28 TraesCS2A01G296500 chrUn 96.296 81 2 1 3564 3644 29600 29679 8.210000e-27 132.0
29 TraesCS2A01G296500 chrUn 96.296 81 2 1 3564 3644 17585393 17585314 8.210000e-27 132.0
30 TraesCS2A01G296500 chrUn 96.296 81 2 1 3564 3644 27369910 27369831 8.210000e-27 132.0
31 TraesCS2A01G296500 chr4A 92.941 85 3 3 3482 3565 500540639 500540557 1.780000e-23 121.0
32 TraesCS2A01G296500 chr4A 92.500 80 6 0 3482 3561 85893958 85893879 8.270000e-22 115.0
33 TraesCS2A01G296500 chr4A 92.000 75 5 1 3491 3565 719858405 719858478 1.790000e-18 104.0
34 TraesCS2A01G296500 chr7B 86.154 65 7 2 497 559 453451571 453451507 6.530000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G296500 chr2A 510424569 510428212 3643 False 6730 6730 100.000 1 3644 1 chr2A.!!$F1 3643
1 TraesCS2A01G296500 chr2B 448112159 448115387 3228 False 4584 4584 92.268 218 3483 1 chr2B.!!$F1 3265
2 TraesCS2A01G296500 chr2D 376691124 376694200 3076 False 4460 4460 92.802 218 3321 1 chr2D.!!$F1 3103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 951 0.183971 AACCGAACCCACCAATGTGA 59.816 50.000 0.00 0.0 45.76 3.58 F
917 952 0.536460 ACCGAACCCACCAATGTGAC 60.536 55.000 0.00 0.0 45.76 3.67 F
929 964 1.225376 AATGTGACGCGAGCCGAAAA 61.225 50.000 15.93 0.0 41.02 2.29 F
930 965 1.225376 ATGTGACGCGAGCCGAAAAA 61.225 50.000 15.93 0.0 41.02 1.94 F
1339 1374 1.630878 ACGCATTCTCTTTCCCTTCCT 59.369 47.619 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 1907 0.034896 TGCCTTTCTCACGGAACTCC 59.965 55.0 0.00 0.00 33.13 3.85 R
1889 1924 0.533755 AAGCTCGTCTGGGCATATGC 60.534 55.0 19.79 19.79 41.14 3.14 R
2057 2092 0.543749 AACAGTAGCCCTCTCCATGC 59.456 55.0 0.00 0.00 0.00 4.06 R
2176 2211 1.799933 CCCTCCAAGAGCATCCTAGT 58.200 55.0 0.00 0.00 33.66 2.57 R
3029 3073 1.026584 CATCTCATCGGCAATGGCAA 58.973 50.0 7.75 0.00 43.71 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.696992 ATTATTATTTTCGCGGGAATGGTAT 57.303 32.000 16.24 9.93 30.88 2.73
25 26 4.822036 TTATTTTCGCGGGAATGGTATG 57.178 40.909 16.24 0.00 30.88 2.39
26 27 1.384525 TTTTCGCGGGAATGGTATGG 58.615 50.000 16.24 0.00 30.88 2.74
27 28 0.253610 TTTCGCGGGAATGGTATGGT 59.746 50.000 16.24 0.00 30.88 3.55
28 29 1.121378 TTCGCGGGAATGGTATGGTA 58.879 50.000 11.32 0.00 0.00 3.25
29 30 1.344065 TCGCGGGAATGGTATGGTAT 58.656 50.000 6.13 0.00 0.00 2.73
30 31 1.695242 TCGCGGGAATGGTATGGTATT 59.305 47.619 6.13 0.00 0.00 1.89
31 32 2.898612 TCGCGGGAATGGTATGGTATTA 59.101 45.455 6.13 0.00 0.00 0.98
32 33 3.324268 TCGCGGGAATGGTATGGTATTAA 59.676 43.478 6.13 0.00 0.00 1.40
33 34 4.020039 TCGCGGGAATGGTATGGTATTAAT 60.020 41.667 6.13 0.00 0.00 1.40
34 35 4.698304 CGCGGGAATGGTATGGTATTAATT 59.302 41.667 0.00 0.00 0.00 1.40
35 36 5.875910 CGCGGGAATGGTATGGTATTAATTA 59.124 40.000 0.00 0.00 0.00 1.40
36 37 6.183360 CGCGGGAATGGTATGGTATTAATTAC 60.183 42.308 0.00 0.00 0.00 1.89
37 38 6.655848 GCGGGAATGGTATGGTATTAATTACA 59.344 38.462 0.00 0.00 31.99 2.41
38 39 7.338449 GCGGGAATGGTATGGTATTAATTACAT 59.662 37.037 0.00 1.71 31.99 2.29
39 40 8.673711 CGGGAATGGTATGGTATTAATTACATG 58.326 37.037 12.32 0.00 31.99 3.21
40 41 8.966868 GGGAATGGTATGGTATTAATTACATGG 58.033 37.037 12.32 0.00 31.99 3.66
41 42 8.466798 GGAATGGTATGGTATTAATTACATGGC 58.533 37.037 12.32 7.09 31.99 4.40
42 43 8.948401 AATGGTATGGTATTAATTACATGGCA 57.052 30.769 12.32 0.00 31.99 4.92
43 44 7.994425 TGGTATGGTATTAATTACATGGCAG 57.006 36.000 12.32 0.00 31.99 4.85
44 45 7.750655 TGGTATGGTATTAATTACATGGCAGA 58.249 34.615 12.32 0.00 31.99 4.26
45 46 8.390143 TGGTATGGTATTAATTACATGGCAGAT 58.610 33.333 12.32 0.00 31.99 2.90
46 47 9.243105 GGTATGGTATTAATTACATGGCAGATT 57.757 33.333 12.32 0.00 31.99 2.40
49 50 8.759481 TGGTATTAATTACATGGCAGATTTCA 57.241 30.769 0.00 0.00 31.99 2.69
50 51 9.365906 TGGTATTAATTACATGGCAGATTTCAT 57.634 29.630 0.00 0.00 31.99 2.57
51 52 9.630098 GGTATTAATTACATGGCAGATTTCATG 57.370 33.333 0.00 0.00 44.42 3.07
52 53 9.630098 GTATTAATTACATGGCAGATTTCATGG 57.370 33.333 0.00 0.00 43.49 3.66
53 54 5.540400 AATTACATGGCAGATTTCATGGG 57.460 39.130 0.00 0.00 43.49 4.00
54 55 2.832643 ACATGGCAGATTTCATGGGA 57.167 45.000 0.00 0.00 43.49 4.37
55 56 3.323774 ACATGGCAGATTTCATGGGAT 57.676 42.857 0.00 0.00 43.49 3.85
56 57 4.458256 ACATGGCAGATTTCATGGGATA 57.542 40.909 0.00 0.00 43.49 2.59
57 58 4.404640 ACATGGCAGATTTCATGGGATAG 58.595 43.478 0.00 0.00 43.49 2.08
58 59 2.867624 TGGCAGATTTCATGGGATAGC 58.132 47.619 0.00 0.00 0.00 2.97
59 60 1.808945 GGCAGATTTCATGGGATAGCG 59.191 52.381 0.00 0.00 0.00 4.26
60 61 2.498167 GCAGATTTCATGGGATAGCGT 58.502 47.619 0.00 0.00 0.00 5.07
61 62 2.880890 GCAGATTTCATGGGATAGCGTT 59.119 45.455 0.00 0.00 0.00 4.84
62 63 3.304257 GCAGATTTCATGGGATAGCGTTG 60.304 47.826 0.00 0.00 0.00 4.10
63 64 4.129380 CAGATTTCATGGGATAGCGTTGA 58.871 43.478 0.00 0.00 0.00 3.18
64 65 4.212847 CAGATTTCATGGGATAGCGTTGAG 59.787 45.833 0.00 0.00 0.00 3.02
65 66 3.627395 TTTCATGGGATAGCGTTGAGT 57.373 42.857 0.00 0.00 0.00 3.41
66 67 2.890808 TCATGGGATAGCGTTGAGTC 57.109 50.000 0.00 0.00 0.00 3.36
67 68 2.107366 TCATGGGATAGCGTTGAGTCA 58.893 47.619 0.00 0.00 0.00 3.41
68 69 2.499693 TCATGGGATAGCGTTGAGTCAA 59.500 45.455 0.08 0.08 0.00 3.18
69 70 3.055458 TCATGGGATAGCGTTGAGTCAAA 60.055 43.478 7.25 0.00 0.00 2.69
70 71 3.410631 TGGGATAGCGTTGAGTCAAAA 57.589 42.857 7.25 0.00 0.00 2.44
71 72 3.950397 TGGGATAGCGTTGAGTCAAAAT 58.050 40.909 7.25 0.00 0.00 1.82
72 73 3.689161 TGGGATAGCGTTGAGTCAAAATG 59.311 43.478 7.25 1.95 0.00 2.32
73 74 3.689649 GGGATAGCGTTGAGTCAAAATGT 59.310 43.478 7.25 0.00 0.00 2.71
74 75 4.437390 GGGATAGCGTTGAGTCAAAATGTG 60.437 45.833 7.25 0.00 0.00 3.21
75 76 4.154195 GGATAGCGTTGAGTCAAAATGTGT 59.846 41.667 7.25 0.00 0.00 3.72
76 77 5.334879 GGATAGCGTTGAGTCAAAATGTGTT 60.335 40.000 7.25 0.00 0.00 3.32
77 78 4.370364 AGCGTTGAGTCAAAATGTGTTT 57.630 36.364 7.25 0.00 0.00 2.83
78 79 5.493133 AGCGTTGAGTCAAAATGTGTTTA 57.507 34.783 7.25 0.00 0.00 2.01
79 80 6.072112 AGCGTTGAGTCAAAATGTGTTTAT 57.928 33.333 7.25 0.00 0.00 1.40
80 81 7.197071 AGCGTTGAGTCAAAATGTGTTTATA 57.803 32.000 7.25 0.00 0.00 0.98
81 82 7.644490 AGCGTTGAGTCAAAATGTGTTTATAA 58.356 30.769 7.25 0.00 0.00 0.98
82 83 8.296713 AGCGTTGAGTCAAAATGTGTTTATAAT 58.703 29.630 7.25 0.00 0.00 1.28
83 84 8.575454 GCGTTGAGTCAAAATGTGTTTATAATC 58.425 33.333 7.25 0.00 0.00 1.75
84 85 9.605955 CGTTGAGTCAAAATGTGTTTATAATCA 57.394 29.630 7.25 0.00 0.00 2.57
94 95 9.859427 AAATGTGTTTATAATCAATGACAGTGG 57.141 29.630 2.62 0.00 0.00 4.00
95 96 7.994425 TGTGTTTATAATCAATGACAGTGGT 57.006 32.000 2.62 0.00 0.00 4.16
96 97 9.679661 ATGTGTTTATAATCAATGACAGTGGTA 57.320 29.630 2.62 0.00 0.00 3.25
97 98 9.161629 TGTGTTTATAATCAATGACAGTGGTAG 57.838 33.333 2.62 0.00 0.00 3.18
98 99 8.612619 GTGTTTATAATCAATGACAGTGGTAGG 58.387 37.037 2.62 0.00 0.00 3.18
99 100 8.325787 TGTTTATAATCAATGACAGTGGTAGGT 58.674 33.333 2.62 0.00 0.00 3.08
100 101 9.826574 GTTTATAATCAATGACAGTGGTAGGTA 57.173 33.333 2.62 0.00 0.00 3.08
105 106 8.964476 AATCAATGACAGTGGTAGGTAATTAG 57.036 34.615 2.62 0.00 0.00 1.73
106 107 7.727578 TCAATGACAGTGGTAGGTAATTAGA 57.272 36.000 2.62 0.00 0.00 2.10
107 108 7.782049 TCAATGACAGTGGTAGGTAATTAGAG 58.218 38.462 2.62 0.00 0.00 2.43
108 109 5.593679 TGACAGTGGTAGGTAATTAGAGC 57.406 43.478 0.00 0.00 0.00 4.09
109 110 5.020795 TGACAGTGGTAGGTAATTAGAGCA 58.979 41.667 0.00 0.00 0.00 4.26
110 111 5.661312 TGACAGTGGTAGGTAATTAGAGCAT 59.339 40.000 0.00 0.00 0.00 3.79
111 112 6.156256 TGACAGTGGTAGGTAATTAGAGCATT 59.844 38.462 0.00 0.00 0.00 3.56
112 113 7.343574 TGACAGTGGTAGGTAATTAGAGCATTA 59.656 37.037 0.00 0.00 0.00 1.90
113 114 8.086143 ACAGTGGTAGGTAATTAGAGCATTAA 57.914 34.615 0.00 0.00 0.00 1.40
114 115 8.545472 ACAGTGGTAGGTAATTAGAGCATTAAA 58.455 33.333 0.00 0.00 0.00 1.52
115 116 8.827677 CAGTGGTAGGTAATTAGAGCATTAAAC 58.172 37.037 0.00 0.00 0.00 2.01
116 117 7.709613 AGTGGTAGGTAATTAGAGCATTAAACG 59.290 37.037 0.00 0.00 0.00 3.60
117 118 7.493645 GTGGTAGGTAATTAGAGCATTAAACGT 59.506 37.037 0.00 0.00 0.00 3.99
118 119 7.493320 TGGTAGGTAATTAGAGCATTAAACGTG 59.507 37.037 0.00 0.00 0.00 4.49
119 120 7.493645 GGTAGGTAATTAGAGCATTAAACGTGT 59.506 37.037 0.00 0.00 0.00 4.49
120 121 7.916914 AGGTAATTAGAGCATTAAACGTGTT 57.083 32.000 0.00 0.00 0.00 3.32
121 122 8.331730 AGGTAATTAGAGCATTAAACGTGTTT 57.668 30.769 3.21 3.21 36.63 2.83
122 123 8.234546 AGGTAATTAGAGCATTAAACGTGTTTG 58.765 33.333 8.19 0.00 34.23 2.93
123 124 8.231837 GGTAATTAGAGCATTAAACGTGTTTGA 58.768 33.333 8.19 0.29 34.23 2.69
124 125 9.769093 GTAATTAGAGCATTAAACGTGTTTGAT 57.231 29.630 8.19 2.78 34.23 2.57
125 126 8.673626 AATTAGAGCATTAAACGTGTTTGATG 57.326 30.769 19.90 19.90 44.44 3.07
131 132 6.127498 CATTAAACGTGTTTGATGCTCAAC 57.873 37.500 14.64 0.00 38.88 3.18
132 133 3.773860 AAACGTGTTTGATGCTCAACA 57.226 38.095 0.00 0.00 35.89 3.33
133 134 3.988379 AACGTGTTTGATGCTCAACAT 57.012 38.095 0.00 0.00 43.54 2.71
134 135 3.988379 ACGTGTTTGATGCTCAACATT 57.012 38.095 0.00 0.00 39.84 2.71
135 136 3.631144 ACGTGTTTGATGCTCAACATTG 58.369 40.909 0.00 0.00 39.84 2.82
136 137 2.981805 CGTGTTTGATGCTCAACATTGG 59.018 45.455 0.00 0.00 39.84 3.16
137 138 3.304592 CGTGTTTGATGCTCAACATTGGA 60.305 43.478 0.00 0.00 39.84 3.53
138 139 4.232221 GTGTTTGATGCTCAACATTGGAG 58.768 43.478 0.00 0.00 39.84 3.86
147 148 4.424061 CTCAACATTGGAGCGATTTGAA 57.576 40.909 0.00 0.00 0.00 2.69
148 149 4.159377 TCAACATTGGAGCGATTTGAAC 57.841 40.909 0.00 0.00 0.00 3.18
149 150 3.057596 TCAACATTGGAGCGATTTGAACC 60.058 43.478 0.00 0.00 0.00 3.62
150 151 1.468520 ACATTGGAGCGATTTGAACCG 59.531 47.619 0.00 0.00 0.00 4.44
159 160 4.116713 GCGATTTGAACCGCTAGATAAC 57.883 45.455 0.00 0.00 46.96 1.89
160 161 3.554324 GCGATTTGAACCGCTAGATAACA 59.446 43.478 0.00 0.00 46.96 2.41
161 162 4.211374 GCGATTTGAACCGCTAGATAACAT 59.789 41.667 0.00 0.00 46.96 2.71
162 163 5.670097 CGATTTGAACCGCTAGATAACATG 58.330 41.667 0.00 0.00 0.00 3.21
163 164 5.462068 CGATTTGAACCGCTAGATAACATGA 59.538 40.000 0.00 0.00 0.00 3.07
164 165 6.146184 CGATTTGAACCGCTAGATAACATGAT 59.854 38.462 0.00 0.00 0.00 2.45
165 166 7.307396 CGATTTGAACCGCTAGATAACATGATT 60.307 37.037 0.00 0.00 0.00 2.57
166 167 7.624360 TTTGAACCGCTAGATAACATGATTT 57.376 32.000 0.00 0.00 0.00 2.17
167 168 6.603237 TGAACCGCTAGATAACATGATTTG 57.397 37.500 0.00 0.00 0.00 2.32
168 169 6.345298 TGAACCGCTAGATAACATGATTTGA 58.655 36.000 0.00 0.00 0.00 2.69
169 170 6.992123 TGAACCGCTAGATAACATGATTTGAT 59.008 34.615 0.00 0.00 0.00 2.57
170 171 6.791887 ACCGCTAGATAACATGATTTGATG 57.208 37.500 0.00 0.00 0.00 3.07
171 172 5.702670 ACCGCTAGATAACATGATTTGATGG 59.297 40.000 0.00 0.00 0.00 3.51
172 173 5.702670 CCGCTAGATAACATGATTTGATGGT 59.297 40.000 0.00 0.00 0.00 3.55
173 174 6.128445 CCGCTAGATAACATGATTTGATGGTC 60.128 42.308 0.00 0.00 0.00 4.02
174 175 6.424812 CGCTAGATAACATGATTTGATGGTCA 59.575 38.462 0.00 0.00 0.00 4.02
175 176 7.041848 CGCTAGATAACATGATTTGATGGTCAA 60.042 37.037 0.00 0.00 34.03 3.18
176 177 8.288208 GCTAGATAACATGATTTGATGGTCAAG 58.712 37.037 0.00 0.00 37.70 3.02
177 178 9.551734 CTAGATAACATGATTTGATGGTCAAGA 57.448 33.333 0.00 0.00 37.70 3.02
178 179 8.991783 AGATAACATGATTTGATGGTCAAGAT 57.008 30.769 0.00 0.00 37.70 2.40
179 180 8.847196 AGATAACATGATTTGATGGTCAAGATG 58.153 33.333 0.00 0.00 37.70 2.90
180 181 5.847111 ACATGATTTGATGGTCAAGATGG 57.153 39.130 0.00 0.00 37.70 3.51
181 182 5.266788 ACATGATTTGATGGTCAAGATGGT 58.733 37.500 0.00 0.00 37.70 3.55
182 183 5.718130 ACATGATTTGATGGTCAAGATGGTT 59.282 36.000 0.00 0.00 37.70 3.67
183 184 6.211986 ACATGATTTGATGGTCAAGATGGTTT 59.788 34.615 0.00 0.00 37.70 3.27
184 185 6.028146 TGATTTGATGGTCAAGATGGTTTG 57.972 37.500 0.00 0.00 37.70 2.93
185 186 4.870123 TTTGATGGTCAAGATGGTTTGG 57.130 40.909 0.00 0.00 37.70 3.28
186 187 3.805066 TGATGGTCAAGATGGTTTGGA 57.195 42.857 0.00 0.00 0.00 3.53
187 188 4.320546 TGATGGTCAAGATGGTTTGGAT 57.679 40.909 0.00 0.00 0.00 3.41
188 189 4.272489 TGATGGTCAAGATGGTTTGGATC 58.728 43.478 0.00 0.00 0.00 3.36
189 190 4.018141 TGATGGTCAAGATGGTTTGGATCT 60.018 41.667 0.00 0.00 0.00 2.75
190 191 3.689347 TGGTCAAGATGGTTTGGATCTG 58.311 45.455 0.00 0.00 30.30 2.90
191 192 2.424956 GGTCAAGATGGTTTGGATCTGC 59.575 50.000 0.00 0.00 30.30 4.26
192 193 2.424956 GTCAAGATGGTTTGGATCTGCC 59.575 50.000 0.00 0.00 30.30 4.85
193 194 1.753073 CAAGATGGTTTGGATCTGCCC 59.247 52.381 0.00 0.00 34.97 5.36
194 195 0.259938 AGATGGTTTGGATCTGCCCC 59.740 55.000 0.00 0.00 34.97 5.80
195 196 0.259938 GATGGTTTGGATCTGCCCCT 59.740 55.000 0.00 0.00 34.97 4.79
196 197 0.712380 ATGGTTTGGATCTGCCCCTT 59.288 50.000 0.00 0.00 34.97 3.95
197 198 0.486879 TGGTTTGGATCTGCCCCTTT 59.513 50.000 0.00 0.00 34.97 3.11
198 199 0.897621 GGTTTGGATCTGCCCCTTTG 59.102 55.000 0.00 0.00 34.97 2.77
199 200 0.897621 GTTTGGATCTGCCCCTTTGG 59.102 55.000 0.00 0.00 34.97 3.28
408 412 8.690680 TGTGTGAAATTTTTAGCGTACTTTTT 57.309 26.923 0.00 0.00 0.00 1.94
439 443 8.934825 TGCCATCAAGCATTCTTTAAAATTTAC 58.065 29.630 0.00 0.00 38.00 2.01
547 562 4.759693 ACAATTTTAGTGACGCAAGGATGA 59.240 37.500 0.00 0.00 46.39 2.92
548 563 5.415701 ACAATTTTAGTGACGCAAGGATGAT 59.584 36.000 0.00 0.00 46.39 2.45
567 582 7.604164 AGGATGATAAGTTTAGTTGACACACAG 59.396 37.037 0.00 0.00 0.00 3.66
568 583 7.602644 GGATGATAAGTTTAGTTGACACACAGA 59.397 37.037 0.00 0.00 0.00 3.41
579 595 4.149511 TGACACACAGACAATTTCCTGA 57.850 40.909 10.00 0.00 34.65 3.86
580 596 3.876914 TGACACACAGACAATTTCCTGAC 59.123 43.478 10.00 0.00 34.65 3.51
587 603 6.757947 ACACAGACAATTTCCTGACAAAAATG 59.242 34.615 10.00 0.88 34.65 2.32
590 606 6.425721 CAGACAATTTCCTGACAAAAATGCAT 59.574 34.615 0.00 0.00 32.37 3.96
609 625 2.121291 TCAAGCACGGATTTGCCATA 57.879 45.000 0.00 0.00 44.14 2.74
611 627 1.745087 CAAGCACGGATTTGCCATACT 59.255 47.619 0.00 0.00 44.14 2.12
612 628 1.382522 AGCACGGATTTGCCATACTG 58.617 50.000 0.00 0.00 44.14 2.74
632 648 1.892474 GGCCAACTAAACTTGCCATCA 59.108 47.619 0.00 0.00 0.00 3.07
633 649 2.497273 GGCCAACTAAACTTGCCATCAT 59.503 45.455 0.00 0.00 0.00 2.45
646 662 1.013596 CCATCATCGCGCCACTAAAA 58.986 50.000 0.00 0.00 0.00 1.52
839 865 4.142138 ACGAGTGATCTAAAGGAAGCGAAT 60.142 41.667 0.00 0.00 0.00 3.34
840 867 4.208047 CGAGTGATCTAAAGGAAGCGAATG 59.792 45.833 0.00 0.00 0.00 2.67
863 892 1.177401 CAGCTACTTTTCTTGGGCCC 58.823 55.000 17.59 17.59 0.00 5.80
905 940 2.644992 CAGGCTGCAAACCGAACC 59.355 61.111 0.00 0.00 0.00 3.62
907 942 2.909965 GGCTGCAAACCGAACCCA 60.910 61.111 0.50 0.00 0.00 4.51
909 944 3.039134 CTGCAAACCGAACCCACC 58.961 61.111 0.00 0.00 0.00 4.61
910 945 1.826054 CTGCAAACCGAACCCACCA 60.826 57.895 0.00 0.00 0.00 4.17
911 946 1.379977 TGCAAACCGAACCCACCAA 60.380 52.632 0.00 0.00 0.00 3.67
912 947 0.757188 TGCAAACCGAACCCACCAAT 60.757 50.000 0.00 0.00 0.00 3.16
913 948 0.319469 GCAAACCGAACCCACCAATG 60.319 55.000 0.00 0.00 0.00 2.82
914 949 1.036707 CAAACCGAACCCACCAATGT 58.963 50.000 0.00 0.00 0.00 2.71
915 950 1.036707 AAACCGAACCCACCAATGTG 58.963 50.000 0.00 0.00 42.39 3.21
916 951 0.183971 AACCGAACCCACCAATGTGA 59.816 50.000 0.00 0.00 45.76 3.58
917 952 0.536460 ACCGAACCCACCAATGTGAC 60.536 55.000 0.00 0.00 45.76 3.67
918 953 1.573829 CCGAACCCACCAATGTGACG 61.574 60.000 0.00 0.00 45.76 4.35
919 954 1.579429 GAACCCACCAATGTGACGC 59.421 57.895 0.00 0.00 45.76 5.19
920 955 2.182614 GAACCCACCAATGTGACGCG 62.183 60.000 3.53 3.53 45.76 6.01
921 956 2.358125 CCCACCAATGTGACGCGA 60.358 61.111 15.93 0.00 45.76 5.87
922 957 2.390599 CCCACCAATGTGACGCGAG 61.391 63.158 15.93 0.00 45.76 5.03
923 958 2.476051 CACCAATGTGACGCGAGC 59.524 61.111 15.93 4.68 45.76 5.03
924 959 2.742372 ACCAATGTGACGCGAGCC 60.742 61.111 15.93 1.42 0.00 4.70
925 960 3.853330 CCAATGTGACGCGAGCCG 61.853 66.667 15.93 0.00 44.21 5.52
926 961 2.809174 CAATGTGACGCGAGCCGA 60.809 61.111 15.93 0.00 41.02 5.54
927 962 2.048597 AATGTGACGCGAGCCGAA 60.049 55.556 15.93 0.00 41.02 4.30
928 963 1.666553 AATGTGACGCGAGCCGAAA 60.667 52.632 15.93 0.00 41.02 3.46
929 964 1.225376 AATGTGACGCGAGCCGAAAA 61.225 50.000 15.93 0.00 41.02 2.29
930 965 1.225376 ATGTGACGCGAGCCGAAAAA 61.225 50.000 15.93 0.00 41.02 1.94
1339 1374 1.630878 ACGCATTCTCTTTCCCTTCCT 59.369 47.619 0.00 0.00 0.00 3.36
1340 1375 2.012673 CGCATTCTCTTTCCCTTCCTG 58.987 52.381 0.00 0.00 0.00 3.86
1518 1553 2.019984 GACTCAATGGTCATTCCCAGC 58.980 52.381 0.00 0.00 38.07 4.85
1585 1620 3.957435 ATCGTGTCTGCCCGGGAGA 62.957 63.158 29.31 21.16 0.00 3.71
1722 1757 4.806481 GCTGCAGCGCACACATCG 62.806 66.667 25.23 0.00 33.79 3.84
1872 1907 5.773176 TGGAGAGGCTTTAAGGGTTTTTAAG 59.227 40.000 0.00 0.00 0.00 1.85
1889 1924 2.841442 AAGGAGTTCCGTGAGAAAGG 57.159 50.000 0.00 0.00 42.08 3.11
2037 2072 4.032960 TGTGTTGGCTGGTCTCATAAAT 57.967 40.909 0.00 0.00 0.00 1.40
2057 2092 5.587388 AATATGAATGCAAAGTGTGGGAG 57.413 39.130 0.00 0.00 0.00 4.30
2176 2211 2.378038 ACAAGGCTGTTGAGCTTTTCA 58.622 42.857 6.38 0.00 41.53 2.69
2273 2308 4.225267 TGGCCTAGTAGAAGAAGGGAAAAG 59.775 45.833 3.32 0.00 0.00 2.27
2851 2894 5.652452 AGTTTGGATGTTTATGGTAGAAGGC 59.348 40.000 0.00 0.00 0.00 4.35
2878 2921 6.617105 GCTGCTTTTTGACATAGAAAACATGC 60.617 38.462 0.00 0.00 0.00 4.06
2959 3002 4.464244 TCACTTCTGCATAGTGCTTCTAGT 59.536 41.667 19.17 0.00 45.31 2.57
3029 3073 4.223700 TGCTGGTGAGATTTCATCTACTGT 59.776 41.667 0.00 0.00 40.38 3.55
3138 3182 4.876107 TGAGCTTTTAGCATACAAGGTAGC 59.124 41.667 1.09 0.00 45.56 3.58
3167 3211 5.847111 ATAGCTGTGATTGCAATGTTGAT 57.153 34.783 18.59 5.56 0.00 2.57
3238 3282 9.398170 CACAAAAACAGAACATTTCAGGTATAG 57.602 33.333 0.00 0.00 0.00 1.31
3239 3283 8.082242 ACAAAAACAGAACATTTCAGGTATAGC 58.918 33.333 0.00 0.00 0.00 2.97
3318 3362 5.788055 TTTGTACAATGTACCTGCATACG 57.212 39.130 19.53 0.00 0.00 3.06
3319 3363 4.459390 TGTACAATGTACCTGCATACGT 57.541 40.909 19.53 0.00 0.00 3.57
3320 3364 4.823157 TGTACAATGTACCTGCATACGTT 58.177 39.130 19.53 0.03 35.16 3.99
3321 3365 5.963594 TGTACAATGTACCTGCATACGTTA 58.036 37.500 19.53 0.00 33.45 3.18
3322 3366 6.575267 TGTACAATGTACCTGCATACGTTAT 58.425 36.000 19.53 0.00 33.45 1.89
3323 3367 7.042950 TGTACAATGTACCTGCATACGTTATT 58.957 34.615 19.53 0.00 33.45 1.40
3324 3368 8.196103 TGTACAATGTACCTGCATACGTTATTA 58.804 33.333 19.53 0.00 33.45 0.98
3325 3369 9.199982 GTACAATGTACCTGCATACGTTATTAT 57.800 33.333 12.26 0.00 33.45 1.28
3392 3436 6.238731 CCCACACAATGTACATGTATGGATTC 60.239 42.308 24.98 2.24 46.06 2.52
3418 3462 7.048512 TCTATCTTTTAACTCCTAGCTTTGCC 58.951 38.462 0.00 0.00 0.00 4.52
3485 3529 9.884636 ACCCTTTAAATATCAAAAACCATTAGC 57.115 29.630 0.00 0.00 0.00 3.09
3486 3530 9.883142 CCCTTTAAATATCAAAAACCATTAGCA 57.117 29.630 0.00 0.00 0.00 3.49
3490 3534 9.781834 TTAAATATCAAAAACCATTAGCACTCG 57.218 29.630 0.00 0.00 0.00 4.18
3491 3535 3.552604 TCAAAAACCATTAGCACTCGC 57.447 42.857 0.00 0.00 38.99 5.03
3492 3536 2.227865 TCAAAAACCATTAGCACTCGCC 59.772 45.455 0.00 0.00 39.83 5.54
3493 3537 2.200373 AAAACCATTAGCACTCGCCT 57.800 45.000 0.00 0.00 39.83 5.52
3494 3538 2.200373 AAACCATTAGCACTCGCCTT 57.800 45.000 0.00 0.00 39.83 4.35
3495 3539 2.200373 AACCATTAGCACTCGCCTTT 57.800 45.000 0.00 0.00 39.83 3.11
3496 3540 3.343941 AACCATTAGCACTCGCCTTTA 57.656 42.857 0.00 0.00 39.83 1.85
3497 3541 3.560636 ACCATTAGCACTCGCCTTTAT 57.439 42.857 0.00 0.00 39.83 1.40
3498 3542 3.206150 ACCATTAGCACTCGCCTTTATG 58.794 45.455 0.00 0.00 39.83 1.90
3499 3543 3.206150 CCATTAGCACTCGCCTTTATGT 58.794 45.455 0.00 0.00 39.83 2.29
3500 3544 3.002656 CCATTAGCACTCGCCTTTATGTG 59.997 47.826 0.00 0.00 39.83 3.21
3501 3545 2.309528 TAGCACTCGCCTTTATGTGG 57.690 50.000 0.00 0.00 39.83 4.17
3502 3546 0.324943 AGCACTCGCCTTTATGTGGT 59.675 50.000 0.00 0.00 39.83 4.16
3503 3547 0.447801 GCACTCGCCTTTATGTGGTG 59.552 55.000 0.00 0.00 36.49 4.17
3504 3548 0.447801 CACTCGCCTTTATGTGGTGC 59.552 55.000 0.00 0.00 35.25 5.01
3505 3549 0.036164 ACTCGCCTTTATGTGGTGCA 59.964 50.000 0.00 0.00 35.25 4.57
3506 3550 1.340017 ACTCGCCTTTATGTGGTGCAT 60.340 47.619 0.00 0.00 41.42 3.96
3507 3551 1.745087 CTCGCCTTTATGTGGTGCATT 59.255 47.619 0.00 0.00 38.94 3.56
3508 3552 1.742831 TCGCCTTTATGTGGTGCATTC 59.257 47.619 0.00 0.00 38.94 2.67
3509 3553 1.202290 CGCCTTTATGTGGTGCATTCC 60.202 52.381 0.00 0.00 38.94 3.01
3510 3554 2.102578 GCCTTTATGTGGTGCATTCCT 58.897 47.619 0.00 0.00 38.94 3.36
3511 3555 2.099756 GCCTTTATGTGGTGCATTCCTC 59.900 50.000 0.00 0.00 38.94 3.71
3512 3556 2.689983 CCTTTATGTGGTGCATTCCTCC 59.310 50.000 0.00 0.00 38.94 4.30
3513 3557 3.624777 CTTTATGTGGTGCATTCCTCCT 58.375 45.455 0.00 0.00 38.94 3.69
3514 3558 3.737559 TTATGTGGTGCATTCCTCCTT 57.262 42.857 0.00 0.00 38.94 3.36
3515 3559 2.610438 ATGTGGTGCATTCCTCCTTT 57.390 45.000 0.00 0.00 33.14 3.11
3516 3560 1.619654 TGTGGTGCATTCCTCCTTTG 58.380 50.000 0.00 0.00 0.00 2.77
3517 3561 0.890683 GTGGTGCATTCCTCCTTTGG 59.109 55.000 0.00 0.00 0.00 3.28
3518 3562 0.251742 TGGTGCATTCCTCCTTTGGG 60.252 55.000 0.00 0.00 0.00 4.12
3519 3563 0.972471 GGTGCATTCCTCCTTTGGGG 60.972 60.000 0.00 0.00 0.00 4.96
3520 3564 0.972471 GTGCATTCCTCCTTTGGGGG 60.972 60.000 0.00 0.00 35.33 5.40
3521 3565 1.388133 GCATTCCTCCTTTGGGGGT 59.612 57.895 2.04 0.00 35.33 4.95
3522 3566 0.972471 GCATTCCTCCTTTGGGGGTG 60.972 60.000 2.04 0.00 35.33 4.61
3523 3567 0.409484 CATTCCTCCTTTGGGGGTGT 59.591 55.000 2.04 0.00 35.33 4.16
3524 3568 1.167033 ATTCCTCCTTTGGGGGTGTT 58.833 50.000 2.04 0.00 35.33 3.32
3525 3569 0.481128 TTCCTCCTTTGGGGGTGTTC 59.519 55.000 2.04 0.00 35.33 3.18
3526 3570 0.402861 TCCTCCTTTGGGGGTGTTCT 60.403 55.000 2.04 0.00 35.33 3.01
3527 3571 0.482887 CCTCCTTTGGGGGTGTTCTT 59.517 55.000 0.00 0.00 35.33 2.52
3528 3572 1.620822 CTCCTTTGGGGGTGTTCTTG 58.379 55.000 0.00 0.00 35.33 3.02
3529 3573 0.930726 TCCTTTGGGGGTGTTCTTGT 59.069 50.000 0.00 0.00 35.33 3.16
3530 3574 2.107552 CTCCTTTGGGGGTGTTCTTGTA 59.892 50.000 0.00 0.00 35.33 2.41
3531 3575 2.514582 TCCTTTGGGGGTGTTCTTGTAA 59.485 45.455 0.00 0.00 35.33 2.41
3532 3576 3.141272 TCCTTTGGGGGTGTTCTTGTAAT 59.859 43.478 0.00 0.00 35.33 1.89
3533 3577 4.354387 TCCTTTGGGGGTGTTCTTGTAATA 59.646 41.667 0.00 0.00 35.33 0.98
3534 3578 4.461431 CCTTTGGGGGTGTTCTTGTAATAC 59.539 45.833 0.00 0.00 0.00 1.89
3535 3579 3.724732 TGGGGGTGTTCTTGTAATACC 57.275 47.619 0.00 0.00 0.00 2.73
3536 3580 3.261962 TGGGGGTGTTCTTGTAATACCT 58.738 45.455 4.06 0.00 32.74 3.08
3537 3581 3.264964 TGGGGGTGTTCTTGTAATACCTC 59.735 47.826 4.06 0.00 32.74 3.85
3538 3582 3.522343 GGGGGTGTTCTTGTAATACCTCT 59.478 47.826 3.92 0.00 33.05 3.69
3539 3583 4.018688 GGGGGTGTTCTTGTAATACCTCTT 60.019 45.833 3.92 0.00 33.05 2.85
3540 3584 5.516062 GGGGGTGTTCTTGTAATACCTCTTT 60.516 44.000 3.92 0.00 33.05 2.52
3541 3585 5.646793 GGGGTGTTCTTGTAATACCTCTTTC 59.353 44.000 4.06 0.00 30.22 2.62
3542 3586 6.473758 GGGTGTTCTTGTAATACCTCTTTCT 58.526 40.000 4.06 0.00 32.74 2.52
3543 3587 6.371825 GGGTGTTCTTGTAATACCTCTTTCTG 59.628 42.308 4.06 0.00 32.74 3.02
3544 3588 7.159372 GGTGTTCTTGTAATACCTCTTTCTGA 58.841 38.462 0.00 0.00 0.00 3.27
3545 3589 7.824779 GGTGTTCTTGTAATACCTCTTTCTGAT 59.175 37.037 0.00 0.00 0.00 2.90
3546 3590 8.874816 GTGTTCTTGTAATACCTCTTTCTGATC 58.125 37.037 0.00 0.00 0.00 2.92
3547 3591 8.593679 TGTTCTTGTAATACCTCTTTCTGATCA 58.406 33.333 0.00 0.00 0.00 2.92
3548 3592 9.436957 GTTCTTGTAATACCTCTTTCTGATCAA 57.563 33.333 0.00 0.00 0.00 2.57
3550 3594 9.605275 TCTTGTAATACCTCTTTCTGATCAATG 57.395 33.333 0.00 0.00 0.00 2.82
3551 3595 9.605275 CTTGTAATACCTCTTTCTGATCAATGA 57.395 33.333 0.00 0.00 0.00 2.57
3552 3596 9.958180 TTGTAATACCTCTTTCTGATCAATGAA 57.042 29.630 0.00 0.00 0.00 2.57
3557 3601 7.166691 ACCTCTTTCTGATCAATGAATTTGG 57.833 36.000 0.00 3.52 35.92 3.28
3558 3602 6.040878 CCTCTTTCTGATCAATGAATTTGGC 58.959 40.000 0.00 0.00 35.92 4.52
3559 3603 6.350696 CCTCTTTCTGATCAATGAATTTGGCA 60.351 38.462 0.00 0.00 35.92 4.92
3560 3604 6.627243 TCTTTCTGATCAATGAATTTGGCAG 58.373 36.000 0.00 0.00 38.44 4.85
3561 3605 5.988310 TTCTGATCAATGAATTTGGCAGT 57.012 34.783 0.00 0.00 38.34 4.40
3562 3606 5.988310 TCTGATCAATGAATTTGGCAGTT 57.012 34.783 0.00 0.00 38.34 3.16
3563 3607 5.957798 TCTGATCAATGAATTTGGCAGTTC 58.042 37.500 0.00 7.51 38.34 3.01
3564 3608 5.713389 TCTGATCAATGAATTTGGCAGTTCT 59.287 36.000 13.51 0.82 38.34 3.01
3565 3609 6.885918 TCTGATCAATGAATTTGGCAGTTCTA 59.114 34.615 13.51 3.94 38.34 2.10
3566 3610 7.558807 TCTGATCAATGAATTTGGCAGTTCTAT 59.441 33.333 13.51 5.55 38.34 1.98
3567 3611 7.485810 TGATCAATGAATTTGGCAGTTCTATG 58.514 34.615 13.51 12.00 35.92 2.23
3568 3612 6.839124 TCAATGAATTTGGCAGTTCTATGT 57.161 33.333 13.51 0.00 35.92 2.29
3569 3613 7.230849 TCAATGAATTTGGCAGTTCTATGTT 57.769 32.000 13.51 4.13 35.92 2.71
3570 3614 7.092079 TCAATGAATTTGGCAGTTCTATGTTG 58.908 34.615 13.51 12.32 35.92 3.33
3571 3615 6.594788 ATGAATTTGGCAGTTCTATGTTGT 57.405 33.333 13.51 0.00 0.00 3.32
3572 3616 6.012658 TGAATTTGGCAGTTCTATGTTGTC 57.987 37.500 13.51 0.00 0.00 3.18
3573 3617 5.769662 TGAATTTGGCAGTTCTATGTTGTCT 59.230 36.000 13.51 0.00 0.00 3.41
3574 3618 5.886960 ATTTGGCAGTTCTATGTTGTCTC 57.113 39.130 0.00 0.00 0.00 3.36
3575 3619 4.350368 TTGGCAGTTCTATGTTGTCTCA 57.650 40.909 0.00 0.00 0.00 3.27
3576 3620 4.350368 TGGCAGTTCTATGTTGTCTCAA 57.650 40.909 0.00 0.00 0.00 3.02
3577 3621 4.065088 TGGCAGTTCTATGTTGTCTCAAC 58.935 43.478 5.78 5.78 0.00 3.18
3578 3622 4.065088 GGCAGTTCTATGTTGTCTCAACA 58.935 43.478 15.83 15.83 34.31 3.33
3579 3623 4.697352 GGCAGTTCTATGTTGTCTCAACAT 59.303 41.667 24.50 24.50 42.82 2.71
3580 3624 5.874810 GGCAGTTCTATGTTGTCTCAACATA 59.125 40.000 24.21 24.21 40.87 2.29
3585 3629 2.093306 TGTTGTCTCAACATAGCCGG 57.907 50.000 10.63 0.00 34.73 6.13
3586 3630 1.346395 TGTTGTCTCAACATAGCCGGT 59.654 47.619 1.90 0.00 34.73 5.28
3587 3631 2.000447 GTTGTCTCAACATAGCCGGTC 59.000 52.381 1.90 0.00 34.73 4.79
3588 3632 0.535335 TGTCTCAACATAGCCGGTCC 59.465 55.000 1.90 0.00 0.00 4.46
3589 3633 0.179081 GTCTCAACATAGCCGGTCCC 60.179 60.000 1.90 0.00 0.00 4.46
3590 3634 0.616395 TCTCAACATAGCCGGTCCCA 60.616 55.000 1.90 0.00 0.00 4.37
3591 3635 0.251916 CTCAACATAGCCGGTCCCAA 59.748 55.000 1.90 0.00 0.00 4.12
3592 3636 0.251916 TCAACATAGCCGGTCCCAAG 59.748 55.000 1.90 0.00 0.00 3.61
3593 3637 1.077716 AACATAGCCGGTCCCAAGC 60.078 57.895 1.90 0.00 0.00 4.01
3594 3638 1.562672 AACATAGCCGGTCCCAAGCT 61.563 55.000 1.90 3.62 40.66 3.74
3595 3639 1.227674 CATAGCCGGTCCCAAGCTC 60.228 63.158 1.90 0.00 38.06 4.09
3596 3640 2.797278 ATAGCCGGTCCCAAGCTCG 61.797 63.158 1.90 0.00 38.06 5.03
3605 3649 2.868253 CCCAAGCTCGGGTAAAAGG 58.132 57.895 0.00 0.00 41.83 3.11
3606 3650 0.326927 CCCAAGCTCGGGTAAAAGGA 59.673 55.000 0.00 0.00 41.83 3.36
3607 3651 1.679032 CCCAAGCTCGGGTAAAAGGAG 60.679 57.143 0.00 0.00 41.83 3.69
3608 3652 1.679032 CCAAGCTCGGGTAAAAGGAGG 60.679 57.143 0.00 0.00 0.00 4.30
3609 3653 1.278127 CAAGCTCGGGTAAAAGGAGGA 59.722 52.381 0.00 0.00 0.00 3.71
3610 3654 1.196012 AGCTCGGGTAAAAGGAGGAG 58.804 55.000 0.00 0.00 0.00 3.69
3611 3655 0.178301 GCTCGGGTAAAAGGAGGAGG 59.822 60.000 0.00 0.00 0.00 4.30
3612 3656 0.831307 CTCGGGTAAAAGGAGGAGGG 59.169 60.000 0.00 0.00 0.00 4.30
3613 3657 0.117742 TCGGGTAAAAGGAGGAGGGT 59.882 55.000 0.00 0.00 0.00 4.34
3614 3658 0.989602 CGGGTAAAAGGAGGAGGGTT 59.010 55.000 0.00 0.00 0.00 4.11
3615 3659 1.339727 CGGGTAAAAGGAGGAGGGTTG 60.340 57.143 0.00 0.00 0.00 3.77
3616 3660 1.709115 GGGTAAAAGGAGGAGGGTTGT 59.291 52.381 0.00 0.00 0.00 3.32
3617 3661 2.554564 GGGTAAAAGGAGGAGGGTTGTG 60.555 54.545 0.00 0.00 0.00 3.33
3618 3662 2.374170 GGTAAAAGGAGGAGGGTTGTGA 59.626 50.000 0.00 0.00 0.00 3.58
3619 3663 3.010250 GGTAAAAGGAGGAGGGTTGTGAT 59.990 47.826 0.00 0.00 0.00 3.06
3620 3664 4.226620 GGTAAAAGGAGGAGGGTTGTGATA 59.773 45.833 0.00 0.00 0.00 2.15
3621 3665 4.576330 AAAAGGAGGAGGGTTGTGATAG 57.424 45.455 0.00 0.00 0.00 2.08
3622 3666 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
3623 3667 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
3624 3668 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
3625 3669 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
3626 3670 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
3627 3671 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
3628 3672 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
3642 3686 4.581105 TGGCCAGCCAACGTAAAA 57.419 50.000 9.42 0.00 44.12 1.52
3643 3687 2.808598 TGGCCAGCCAACGTAAAAA 58.191 47.368 9.42 0.00 44.12 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.362574 CCATACCATTCCCGCGAAAATAATAAT 60.363 37.037 8.23 0.00 0.00 1.28
1 2 6.072397 CCATACCATTCCCGCGAAAATAATAA 60.072 38.462 8.23 0.00 0.00 1.40
2 3 5.413213 CCATACCATTCCCGCGAAAATAATA 59.587 40.000 8.23 3.32 0.00 0.98
3 4 4.217550 CCATACCATTCCCGCGAAAATAAT 59.782 41.667 8.23 1.11 0.00 1.28
4 5 3.566322 CCATACCATTCCCGCGAAAATAA 59.434 43.478 8.23 0.00 0.00 1.40
5 6 3.142951 CCATACCATTCCCGCGAAAATA 58.857 45.455 8.23 0.00 0.00 1.40
6 7 1.953686 CCATACCATTCCCGCGAAAAT 59.046 47.619 8.23 3.54 0.00 1.82
7 8 1.340211 ACCATACCATTCCCGCGAAAA 60.340 47.619 8.23 0.61 0.00 2.29
8 9 0.253610 ACCATACCATTCCCGCGAAA 59.746 50.000 8.23 1.06 0.00 3.46
9 10 1.121378 TACCATACCATTCCCGCGAA 58.879 50.000 8.23 0.00 0.00 4.70
10 11 1.344065 ATACCATACCATTCCCGCGA 58.656 50.000 8.23 0.00 0.00 5.87
11 12 2.178912 AATACCATACCATTCCCGCG 57.821 50.000 0.00 0.00 0.00 6.46
12 13 6.655848 TGTAATTAATACCATACCATTCCCGC 59.344 38.462 0.00 0.00 33.27 6.13
13 14 8.673711 CATGTAATTAATACCATACCATTCCCG 58.326 37.037 0.00 0.00 33.27 5.14
14 15 8.966868 CCATGTAATTAATACCATACCATTCCC 58.033 37.037 0.00 0.00 33.27 3.97
15 16 8.466798 GCCATGTAATTAATACCATACCATTCC 58.533 37.037 0.00 0.00 33.27 3.01
16 17 9.019656 TGCCATGTAATTAATACCATACCATTC 57.980 33.333 0.00 0.00 33.27 2.67
17 18 8.948401 TGCCATGTAATTAATACCATACCATT 57.052 30.769 0.00 0.00 33.27 3.16
18 19 8.390143 TCTGCCATGTAATTAATACCATACCAT 58.610 33.333 0.00 0.00 33.27 3.55
19 20 7.750655 TCTGCCATGTAATTAATACCATACCA 58.249 34.615 0.00 0.00 33.27 3.25
20 21 8.807948 ATCTGCCATGTAATTAATACCATACC 57.192 34.615 0.00 0.00 33.27 2.73
23 24 9.365906 TGAAATCTGCCATGTAATTAATACCAT 57.634 29.630 0.00 0.00 33.27 3.55
24 25 8.759481 TGAAATCTGCCATGTAATTAATACCA 57.241 30.769 0.00 0.00 33.27 3.25
25 26 9.630098 CATGAAATCTGCCATGTAATTAATACC 57.370 33.333 0.00 0.00 36.36 2.73
26 27 9.630098 CCATGAAATCTGCCATGTAATTAATAC 57.370 33.333 0.00 0.00 38.69 1.89
27 28 8.805175 CCCATGAAATCTGCCATGTAATTAATA 58.195 33.333 0.00 0.00 38.69 0.98
28 29 7.510001 TCCCATGAAATCTGCCATGTAATTAAT 59.490 33.333 0.00 0.00 38.69 1.40
29 30 6.838090 TCCCATGAAATCTGCCATGTAATTAA 59.162 34.615 0.00 0.00 38.69 1.40
30 31 6.372104 TCCCATGAAATCTGCCATGTAATTA 58.628 36.000 0.00 0.00 38.69 1.40
31 32 5.210430 TCCCATGAAATCTGCCATGTAATT 58.790 37.500 0.00 0.00 38.69 1.40
32 33 4.806892 TCCCATGAAATCTGCCATGTAAT 58.193 39.130 0.00 0.00 38.69 1.89
33 34 4.248174 TCCCATGAAATCTGCCATGTAA 57.752 40.909 0.00 0.00 38.69 2.41
34 35 3.949586 TCCCATGAAATCTGCCATGTA 57.050 42.857 0.00 0.00 38.69 2.29
35 36 2.832643 TCCCATGAAATCTGCCATGT 57.167 45.000 0.00 0.00 38.69 3.21
36 37 3.192844 GCTATCCCATGAAATCTGCCATG 59.807 47.826 0.00 0.00 39.72 3.66
37 38 3.428532 GCTATCCCATGAAATCTGCCAT 58.571 45.455 0.00 0.00 0.00 4.40
38 39 2.811504 CGCTATCCCATGAAATCTGCCA 60.812 50.000 0.00 0.00 0.00 4.92
39 40 1.808945 CGCTATCCCATGAAATCTGCC 59.191 52.381 0.00 0.00 0.00 4.85
40 41 2.498167 ACGCTATCCCATGAAATCTGC 58.502 47.619 0.00 0.00 0.00 4.26
41 42 4.129380 TCAACGCTATCCCATGAAATCTG 58.871 43.478 0.00 0.00 0.00 2.90
42 43 4.141620 ACTCAACGCTATCCCATGAAATCT 60.142 41.667 0.00 0.00 0.00 2.40
43 44 4.130118 ACTCAACGCTATCCCATGAAATC 58.870 43.478 0.00 0.00 0.00 2.17
44 45 4.130118 GACTCAACGCTATCCCATGAAAT 58.870 43.478 0.00 0.00 0.00 2.17
45 46 3.055458 TGACTCAACGCTATCCCATGAAA 60.055 43.478 0.00 0.00 0.00 2.69
46 47 2.499693 TGACTCAACGCTATCCCATGAA 59.500 45.455 0.00 0.00 0.00 2.57
47 48 2.107366 TGACTCAACGCTATCCCATGA 58.893 47.619 0.00 0.00 0.00 3.07
48 49 2.602257 TGACTCAACGCTATCCCATG 57.398 50.000 0.00 0.00 0.00 3.66
49 50 3.627395 TTTGACTCAACGCTATCCCAT 57.373 42.857 0.00 0.00 0.00 4.00
50 51 3.410631 TTTTGACTCAACGCTATCCCA 57.589 42.857 0.00 0.00 0.00 4.37
51 52 3.689649 ACATTTTGACTCAACGCTATCCC 59.310 43.478 0.00 0.00 0.00 3.85
52 53 4.154195 ACACATTTTGACTCAACGCTATCC 59.846 41.667 0.00 0.00 0.00 2.59
53 54 5.283060 ACACATTTTGACTCAACGCTATC 57.717 39.130 0.00 0.00 0.00 2.08
54 55 5.689383 AACACATTTTGACTCAACGCTAT 57.311 34.783 0.00 0.00 0.00 2.97
55 56 5.493133 AAACACATTTTGACTCAACGCTA 57.507 34.783 0.00 0.00 0.00 4.26
56 57 4.370364 AAACACATTTTGACTCAACGCT 57.630 36.364 0.00 0.00 0.00 5.07
57 58 7.845617 TTATAAACACATTTTGACTCAACGC 57.154 32.000 0.00 0.00 0.00 4.84
58 59 9.605955 TGATTATAAACACATTTTGACTCAACG 57.394 29.630 0.00 0.00 0.00 4.10
68 69 9.859427 CCACTGTCATTGATTATAAACACATTT 57.141 29.630 0.00 0.00 0.00 2.32
69 70 9.023962 ACCACTGTCATTGATTATAAACACATT 57.976 29.630 0.00 0.00 0.00 2.71
70 71 8.579850 ACCACTGTCATTGATTATAAACACAT 57.420 30.769 0.00 0.00 0.00 3.21
71 72 7.994425 ACCACTGTCATTGATTATAAACACA 57.006 32.000 0.00 0.00 0.00 3.72
72 73 8.612619 CCTACCACTGTCATTGATTATAAACAC 58.387 37.037 0.00 0.00 0.00 3.32
73 74 8.325787 ACCTACCACTGTCATTGATTATAAACA 58.674 33.333 0.00 0.00 0.00 2.83
74 75 8.732746 ACCTACCACTGTCATTGATTATAAAC 57.267 34.615 0.00 0.00 0.00 2.01
80 81 8.768397 TCTAATTACCTACCACTGTCATTGATT 58.232 33.333 0.00 0.00 0.00 2.57
81 82 8.319057 TCTAATTACCTACCACTGTCATTGAT 57.681 34.615 0.00 0.00 0.00 2.57
82 83 7.632898 GCTCTAATTACCTACCACTGTCATTGA 60.633 40.741 0.00 0.00 0.00 2.57
83 84 6.480320 GCTCTAATTACCTACCACTGTCATTG 59.520 42.308 0.00 0.00 0.00 2.82
84 85 6.156256 TGCTCTAATTACCTACCACTGTCATT 59.844 38.462 0.00 0.00 0.00 2.57
85 86 5.661312 TGCTCTAATTACCTACCACTGTCAT 59.339 40.000 0.00 0.00 0.00 3.06
86 87 5.020795 TGCTCTAATTACCTACCACTGTCA 58.979 41.667 0.00 0.00 0.00 3.58
87 88 5.593679 TGCTCTAATTACCTACCACTGTC 57.406 43.478 0.00 0.00 0.00 3.51
88 89 6.561519 AATGCTCTAATTACCTACCACTGT 57.438 37.500 0.00 0.00 0.00 3.55
89 90 8.827677 GTTTAATGCTCTAATTACCTACCACTG 58.172 37.037 0.00 0.00 0.00 3.66
90 91 7.709613 CGTTTAATGCTCTAATTACCTACCACT 59.290 37.037 0.00 0.00 0.00 4.00
91 92 7.493645 ACGTTTAATGCTCTAATTACCTACCAC 59.506 37.037 0.00 0.00 0.00 4.16
92 93 7.493320 CACGTTTAATGCTCTAATTACCTACCA 59.507 37.037 0.00 0.00 0.00 3.25
93 94 7.493645 ACACGTTTAATGCTCTAATTACCTACC 59.506 37.037 0.00 0.00 0.00 3.18
94 95 8.416485 ACACGTTTAATGCTCTAATTACCTAC 57.584 34.615 0.00 0.00 0.00 3.18
95 96 9.439500 AAACACGTTTAATGCTCTAATTACCTA 57.561 29.630 0.00 0.00 0.00 3.08
96 97 7.916914 AACACGTTTAATGCTCTAATTACCT 57.083 32.000 0.00 0.00 0.00 3.08
97 98 8.231837 TCAAACACGTTTAATGCTCTAATTACC 58.768 33.333 0.00 0.00 0.00 2.85
98 99 9.769093 ATCAAACACGTTTAATGCTCTAATTAC 57.231 29.630 0.00 0.00 0.00 1.89
99 100 9.767684 CATCAAACACGTTTAATGCTCTAATTA 57.232 29.630 0.00 0.00 0.00 1.40
100 101 7.273381 GCATCAAACACGTTTAATGCTCTAATT 59.727 33.333 19.18 0.00 45.90 1.40
101 102 6.747280 GCATCAAACACGTTTAATGCTCTAAT 59.253 34.615 19.18 0.00 45.90 1.73
102 103 6.083630 GCATCAAACACGTTTAATGCTCTAA 58.916 36.000 19.18 0.00 45.90 2.10
103 104 5.627172 GCATCAAACACGTTTAATGCTCTA 58.373 37.500 19.18 0.00 45.90 2.43
104 105 4.475944 GCATCAAACACGTTTAATGCTCT 58.524 39.130 19.18 0.00 45.90 4.09
105 106 4.806056 GCATCAAACACGTTTAATGCTC 57.194 40.909 19.18 0.00 45.90 4.26
122 123 1.372582 TCGCTCCAATGTTGAGCATC 58.627 50.000 12.22 0.00 41.64 3.91
123 124 2.048444 ATCGCTCCAATGTTGAGCAT 57.952 45.000 12.22 3.08 41.64 3.79
124 125 1.825090 AATCGCTCCAATGTTGAGCA 58.175 45.000 12.22 1.02 41.64 4.26
125 126 2.162208 TCAAATCGCTCCAATGTTGAGC 59.838 45.455 2.24 2.24 38.48 4.26
126 127 4.161333 GTTCAAATCGCTCCAATGTTGAG 58.839 43.478 0.00 0.00 0.00 3.02
127 128 3.057596 GGTTCAAATCGCTCCAATGTTGA 60.058 43.478 0.00 0.00 0.00 3.18
128 129 3.244976 GGTTCAAATCGCTCCAATGTTG 58.755 45.455 0.00 0.00 0.00 3.33
129 130 2.095263 CGGTTCAAATCGCTCCAATGTT 60.095 45.455 0.00 0.00 0.00 2.71
130 131 1.468520 CGGTTCAAATCGCTCCAATGT 59.531 47.619 0.00 0.00 0.00 2.71
131 132 2.178474 CGGTTCAAATCGCTCCAATG 57.822 50.000 0.00 0.00 0.00 2.82
139 140 5.462068 TCATGTTATCTAGCGGTTCAAATCG 59.538 40.000 0.00 0.00 35.16 3.34
140 141 6.844696 TCATGTTATCTAGCGGTTCAAATC 57.155 37.500 0.00 0.00 0.00 2.17
141 142 7.807977 AATCATGTTATCTAGCGGTTCAAAT 57.192 32.000 0.00 0.00 0.00 2.32
142 143 7.335673 TCAAATCATGTTATCTAGCGGTTCAAA 59.664 33.333 0.00 0.00 0.00 2.69
143 144 6.821160 TCAAATCATGTTATCTAGCGGTTCAA 59.179 34.615 0.00 0.00 0.00 2.69
144 145 6.345298 TCAAATCATGTTATCTAGCGGTTCA 58.655 36.000 0.00 0.00 0.00 3.18
145 146 6.844696 TCAAATCATGTTATCTAGCGGTTC 57.155 37.500 0.00 0.00 0.00 3.62
146 147 6.205464 CCATCAAATCATGTTATCTAGCGGTT 59.795 38.462 0.00 0.00 0.00 4.44
147 148 5.702670 CCATCAAATCATGTTATCTAGCGGT 59.297 40.000 0.00 0.00 0.00 5.68
148 149 5.702670 ACCATCAAATCATGTTATCTAGCGG 59.297 40.000 0.00 0.00 0.00 5.52
149 150 6.424812 TGACCATCAAATCATGTTATCTAGCG 59.575 38.462 0.00 0.00 0.00 4.26
150 151 7.734924 TGACCATCAAATCATGTTATCTAGC 57.265 36.000 0.00 0.00 0.00 3.42
151 152 9.551734 TCTTGACCATCAAATCATGTTATCTAG 57.448 33.333 0.00 0.00 35.73 2.43
153 154 8.847196 CATCTTGACCATCAAATCATGTTATCT 58.153 33.333 0.00 0.00 35.73 1.98
154 155 8.080417 CCATCTTGACCATCAAATCATGTTATC 58.920 37.037 0.00 0.00 35.73 1.75
155 156 7.562454 ACCATCTTGACCATCAAATCATGTTAT 59.438 33.333 0.00 0.00 35.73 1.89
156 157 6.891361 ACCATCTTGACCATCAAATCATGTTA 59.109 34.615 0.00 0.00 35.73 2.41
157 158 5.718130 ACCATCTTGACCATCAAATCATGTT 59.282 36.000 0.00 0.00 35.73 2.71
158 159 5.266788 ACCATCTTGACCATCAAATCATGT 58.733 37.500 0.00 0.00 35.73 3.21
159 160 5.847111 ACCATCTTGACCATCAAATCATG 57.153 39.130 0.00 0.00 35.73 3.07
160 161 6.351541 CCAAACCATCTTGACCATCAAATCAT 60.352 38.462 0.00 0.00 35.73 2.45
161 162 5.047164 CCAAACCATCTTGACCATCAAATCA 60.047 40.000 0.00 0.00 35.73 2.57
162 163 5.185635 TCCAAACCATCTTGACCATCAAATC 59.814 40.000 0.00 0.00 35.73 2.17
163 164 5.085920 TCCAAACCATCTTGACCATCAAAT 58.914 37.500 0.00 0.00 35.73 2.32
164 165 4.478203 TCCAAACCATCTTGACCATCAAA 58.522 39.130 0.00 0.00 35.73 2.69
165 166 4.111255 TCCAAACCATCTTGACCATCAA 57.889 40.909 0.00 0.00 34.79 2.57
166 167 3.805066 TCCAAACCATCTTGACCATCA 57.195 42.857 0.00 0.00 0.00 3.07
167 168 4.337555 CAGATCCAAACCATCTTGACCATC 59.662 45.833 0.00 0.00 0.00 3.51
168 169 4.275810 CAGATCCAAACCATCTTGACCAT 58.724 43.478 0.00 0.00 0.00 3.55
169 170 3.689347 CAGATCCAAACCATCTTGACCA 58.311 45.455 0.00 0.00 0.00 4.02
170 171 2.424956 GCAGATCCAAACCATCTTGACC 59.575 50.000 0.00 0.00 0.00 4.02
171 172 2.424956 GGCAGATCCAAACCATCTTGAC 59.575 50.000 0.00 0.00 34.01 3.18
172 173 2.621407 GGGCAGATCCAAACCATCTTGA 60.621 50.000 0.00 0.00 36.21 3.02
173 174 1.753073 GGGCAGATCCAAACCATCTTG 59.247 52.381 0.00 0.00 36.21 3.02
174 175 1.342374 GGGGCAGATCCAAACCATCTT 60.342 52.381 0.00 0.00 36.21 2.40
175 176 0.259938 GGGGCAGATCCAAACCATCT 59.740 55.000 0.00 0.00 36.21 2.90
176 177 0.259938 AGGGGCAGATCCAAACCATC 59.740 55.000 0.00 0.00 36.21 3.51
177 178 0.712380 AAGGGGCAGATCCAAACCAT 59.288 50.000 0.00 0.00 36.21 3.55
178 179 0.486879 AAAGGGGCAGATCCAAACCA 59.513 50.000 0.00 0.00 36.21 3.67
179 180 0.897621 CAAAGGGGCAGATCCAAACC 59.102 55.000 0.00 0.00 36.21 3.27
180 181 0.897621 CCAAAGGGGCAGATCCAAAC 59.102 55.000 0.00 0.00 36.21 2.93
181 182 3.379617 CCAAAGGGGCAGATCCAAA 57.620 52.632 0.00 0.00 36.21 3.28
378 382 9.308318 AGTACGCTAAAAATTTCACACATTTTT 57.692 25.926 8.11 8.11 43.24 1.94
379 383 8.865590 AGTACGCTAAAAATTTCACACATTTT 57.134 26.923 0.00 0.00 35.72 1.82
435 439 9.601971 GCAGTGTTAAAAAGATATTCGTGTAAA 57.398 29.630 0.00 0.00 0.00 2.01
438 442 7.197071 TGCAGTGTTAAAAAGATATTCGTGT 57.803 32.000 0.00 0.00 0.00 4.49
439 443 9.767684 TTATGCAGTGTTAAAAAGATATTCGTG 57.232 29.630 0.00 0.00 0.00 4.35
476 480 7.999450 TGGTAATAAAACAAACGTTAGGGAT 57.001 32.000 0.00 0.00 0.00 3.85
477 481 7.094291 CCATGGTAATAAAACAAACGTTAGGGA 60.094 37.037 2.57 0.00 0.00 4.20
478 482 7.030768 CCATGGTAATAAAACAAACGTTAGGG 58.969 38.462 2.57 0.00 0.00 3.53
479 483 6.528774 GCCATGGTAATAAAACAAACGTTAGG 59.471 38.462 14.67 0.00 0.00 2.69
480 484 7.085116 TGCCATGGTAATAAAACAAACGTTAG 58.915 34.615 14.67 0.00 0.00 2.34
481 485 6.978338 TGCCATGGTAATAAAACAAACGTTA 58.022 32.000 14.67 0.00 0.00 3.18
482 486 5.844004 TGCCATGGTAATAAAACAAACGTT 58.156 33.333 14.67 0.00 0.00 3.99
483 487 5.455056 TGCCATGGTAATAAAACAAACGT 57.545 34.783 14.67 0.00 0.00 3.99
484 488 6.771188 TTTGCCATGGTAATAAAACAAACG 57.229 33.333 16.56 0.00 0.00 3.60
513 528 9.123709 GCGTCACTAAAATTGTCATCAAAAATA 57.876 29.630 0.00 0.00 37.11 1.40
533 548 4.946784 AAACTTATCATCCTTGCGTCAC 57.053 40.909 0.00 0.00 0.00 3.67
537 552 6.092122 TGTCAACTAAACTTATCATCCTTGCG 59.908 38.462 0.00 0.00 0.00 4.85
547 562 8.677148 ATTGTCTGTGTGTCAACTAAACTTAT 57.323 30.769 0.00 0.00 0.00 1.73
548 563 8.500753 AATTGTCTGTGTGTCAACTAAACTTA 57.499 30.769 0.00 0.00 0.00 2.24
567 582 6.424509 TGATGCATTTTTGTCAGGAAATTGTC 59.575 34.615 0.00 0.00 0.00 3.18
568 583 6.289834 TGATGCATTTTTGTCAGGAAATTGT 58.710 32.000 0.00 0.00 0.00 2.71
587 603 0.803380 GGCAAATCCGTGCTTGATGC 60.803 55.000 0.00 0.00 44.31 3.91
590 606 1.742831 GTATGGCAAATCCGTGCTTGA 59.257 47.619 0.00 0.00 44.31 3.02
609 625 1.328279 GGCAAGTTTAGTTGGCCAGT 58.672 50.000 5.11 0.00 45.03 4.00
632 648 3.840890 TGAAAATTTTAGTGGCGCGAT 57.159 38.095 12.10 0.00 0.00 4.58
633 649 3.726486 CGATGAAAATTTTAGTGGCGCGA 60.726 43.478 12.10 0.00 0.00 5.87
646 662 7.307930 GGCCAATCAAAAGTTTTCGATGAAAAT 60.308 33.333 0.00 0.00 42.31 1.82
685 701 1.475392 CCCGATAACGCCCCAACATTA 60.475 52.381 0.00 0.00 38.29 1.90
692 708 2.261430 AAAGGACCCGATAACGCCCC 62.261 60.000 0.00 0.00 38.29 5.80
802 825 7.596749 AGATCACTCGTTTGTTTCGATTATT 57.403 32.000 0.00 0.00 36.73 1.40
804 827 8.523523 TTTAGATCACTCGTTTGTTTCGATTA 57.476 30.769 0.00 0.00 36.73 1.75
807 830 5.404366 CCTTTAGATCACTCGTTTGTTTCGA 59.596 40.000 0.00 0.00 35.96 3.71
808 831 5.404366 TCCTTTAGATCACTCGTTTGTTTCG 59.596 40.000 0.00 0.00 0.00 3.46
839 865 3.149196 CCCAAGAAAAGTAGCTGCTTCA 58.851 45.455 17.87 0.00 0.00 3.02
840 867 2.095008 GCCCAAGAAAAGTAGCTGCTTC 60.095 50.000 17.87 6.46 0.00 3.86
863 892 1.864711 CGCCTACATGGTAAATGGACG 59.135 52.381 0.00 0.00 38.35 4.79
905 940 3.027170 GCTCGCGTCACATTGGTGG 62.027 63.158 5.77 0.00 45.32 4.61
907 942 2.742372 GGCTCGCGTCACATTGGT 60.742 61.111 5.77 0.00 0.00 3.67
909 944 1.896339 TTTCGGCTCGCGTCACATTG 61.896 55.000 5.77 0.00 0.00 2.82
910 945 1.225376 TTTTCGGCTCGCGTCACATT 61.225 50.000 5.77 0.00 0.00 2.71
911 946 1.225376 TTTTTCGGCTCGCGTCACAT 61.225 50.000 5.77 0.00 0.00 3.21
912 947 1.883544 TTTTTCGGCTCGCGTCACA 60.884 52.632 5.77 0.00 0.00 3.58
913 948 2.932905 TTTTTCGGCTCGCGTCAC 59.067 55.556 5.77 0.00 0.00 3.67
927 962 2.140138 GGCCTGGGTGTGCCTTTTT 61.140 57.895 0.00 0.00 44.46 1.94
928 963 2.524148 GGCCTGGGTGTGCCTTTT 60.524 61.111 0.00 0.00 44.46 2.27
1057 1092 1.506718 CGAGGCAGCGAAGAGTACA 59.493 57.895 0.00 0.00 0.00 2.90
1092 1127 1.143183 GAGGCCAAGGCGAACGATA 59.857 57.895 5.01 0.00 43.06 2.92
1518 1553 1.376037 GGCAGTCCAGGAAACCTCG 60.376 63.158 0.00 0.00 0.00 4.63
1585 1620 2.363680 TGTGTGGCATTCGGTCAAAAAT 59.636 40.909 0.00 0.00 29.11 1.82
1660 1695 1.078567 GCCTCCTTGCACTCTCCAG 60.079 63.158 0.00 0.00 0.00 3.86
1722 1757 1.745232 TTGCATACCCACCGATCAAC 58.255 50.000 0.00 0.00 0.00 3.18
1872 1907 0.034896 TGCCTTTCTCACGGAACTCC 59.965 55.000 0.00 0.00 33.13 3.85
1889 1924 0.533755 AAGCTCGTCTGGGCATATGC 60.534 55.000 19.79 19.79 41.14 3.14
2025 2060 8.407832 CACTTTGCATTCATATTTATGAGACCA 58.592 33.333 0.00 0.00 42.99 4.02
2037 2072 2.754552 GCTCCCACACTTTGCATTCATA 59.245 45.455 0.00 0.00 0.00 2.15
2057 2092 0.543749 AACAGTAGCCCTCTCCATGC 59.456 55.000 0.00 0.00 0.00 4.06
2176 2211 1.799933 CCCTCCAAGAGCATCCTAGT 58.200 55.000 0.00 0.00 33.66 2.57
2273 2308 6.855836 TCATTCTTCATCATTGCAAAGTACC 58.144 36.000 1.71 0.00 0.00 3.34
2529 2564 6.266558 TGTTAGCATAAATGTTTGACAGGGTT 59.733 34.615 0.00 0.00 0.00 4.11
2641 2676 8.318412 TCAATAGTCTCAACAAATGCCTTACTA 58.682 33.333 0.00 0.00 0.00 1.82
2811 2846 4.892433 CCAAACTTGGGTGCAAATCATTA 58.108 39.130 0.09 0.00 44.70 1.90
2851 2894 5.978919 TGTTTTCTATGTCAAAAAGCAGCAG 59.021 36.000 0.00 0.00 0.00 4.24
2959 3002 6.156748 ACACGAGGTAATGTCAGCATATAA 57.843 37.500 0.00 0.00 34.39 0.98
3029 3073 1.026584 CATCTCATCGGCAATGGCAA 58.973 50.000 7.75 0.00 43.71 4.52
3117 3161 3.871594 CGCTACCTTGTATGCTAAAAGCT 59.128 43.478 0.03 0.00 42.97 3.74
3167 3211 8.314021 TCAGTTCAACAGAGATTATAGCTTTCA 58.686 33.333 0.00 0.00 0.00 2.69
3238 3282 4.088648 CCATTTTACATTCACGAGTTCGC 58.911 43.478 0.73 0.00 44.43 4.70
3239 3283 5.107259 TGTCCATTTTACATTCACGAGTTCG 60.107 40.000 0.00 0.00 46.33 3.95
3289 3333 6.712998 TGCAGGTACATTGTACAAAAGTATGT 59.287 34.615 24.35 17.57 37.32 2.29
3322 3366 9.453325 GTTTCTAAACATCACGGAAAAACATAA 57.547 29.630 0.74 0.00 38.74 1.90
3323 3367 8.622157 TGTTTCTAAACATCACGGAAAAACATA 58.378 29.630 4.19 0.00 43.45 2.29
3324 3368 7.484975 TGTTTCTAAACATCACGGAAAAACAT 58.515 30.769 4.19 0.00 43.45 2.71
3325 3369 6.853720 TGTTTCTAAACATCACGGAAAAACA 58.146 32.000 4.19 0.00 43.45 2.83
3359 3403 3.639094 TGTACATTGTGTGGGAAAAAGGG 59.361 43.478 0.00 0.00 0.00 3.95
3392 3436 7.225734 GGCAAAGCTAGGAGTTAAAAGATAGAG 59.774 40.741 0.00 0.00 0.00 2.43
3402 3446 3.173965 ACTCAGGCAAAGCTAGGAGTTA 58.826 45.455 0.00 0.00 32.72 2.24
3440 3484 3.393970 TTCTGGGAGCTGGAGCCG 61.394 66.667 0.00 0.00 43.38 5.52
3483 3527 0.324943 ACCACATAAAGGCGAGTGCT 59.675 50.000 0.00 0.00 42.25 4.40
3484 3528 0.447801 CACCACATAAAGGCGAGTGC 59.552 55.000 0.00 0.00 41.71 4.40
3485 3529 0.447801 GCACCACATAAAGGCGAGTG 59.552 55.000 0.00 0.00 0.00 3.51
3486 3530 0.036164 TGCACCACATAAAGGCGAGT 59.964 50.000 0.00 0.00 0.00 4.18
3487 3531 1.382522 ATGCACCACATAAAGGCGAG 58.617 50.000 0.00 0.00 37.17 5.03
3488 3532 1.742831 GAATGCACCACATAAAGGCGA 59.257 47.619 0.00 0.00 38.34 5.54
3489 3533 1.202290 GGAATGCACCACATAAAGGCG 60.202 52.381 0.00 0.00 38.34 5.52
3490 3534 2.099756 GAGGAATGCACCACATAAAGGC 59.900 50.000 0.00 0.00 38.34 4.35
3491 3535 2.689983 GGAGGAATGCACCACATAAAGG 59.310 50.000 0.00 0.00 38.34 3.11
3492 3536 3.624777 AGGAGGAATGCACCACATAAAG 58.375 45.455 0.00 0.00 38.34 1.85
3493 3537 3.737559 AGGAGGAATGCACCACATAAA 57.262 42.857 0.00 0.00 38.34 1.40
3494 3538 3.737559 AAGGAGGAATGCACCACATAA 57.262 42.857 0.00 0.00 38.34 1.90
3495 3539 3.355378 CAAAGGAGGAATGCACCACATA 58.645 45.455 0.00 0.00 38.34 2.29
3496 3540 2.173519 CAAAGGAGGAATGCACCACAT 58.826 47.619 0.00 0.00 42.30 3.21
3497 3541 1.619654 CAAAGGAGGAATGCACCACA 58.380 50.000 0.00 0.00 0.00 4.17
3498 3542 0.890683 CCAAAGGAGGAATGCACCAC 59.109 55.000 0.00 0.00 0.00 4.16
3499 3543 0.251742 CCCAAAGGAGGAATGCACCA 60.252 55.000 0.00 0.00 33.47 4.17
3500 3544 0.972471 CCCCAAAGGAGGAATGCACC 60.972 60.000 0.00 0.00 38.24 5.01
3501 3545 0.972471 CCCCCAAAGGAGGAATGCAC 60.972 60.000 0.00 0.00 38.24 4.57
3502 3546 1.387737 CCCCCAAAGGAGGAATGCA 59.612 57.895 0.00 0.00 38.24 3.96
3503 3547 0.972471 CACCCCCAAAGGAGGAATGC 60.972 60.000 0.00 0.00 38.24 3.56
3504 3548 0.409484 ACACCCCCAAAGGAGGAATG 59.591 55.000 0.00 0.00 38.24 2.67
3505 3549 1.077169 GAACACCCCCAAAGGAGGAAT 59.923 52.381 0.00 0.00 38.24 3.01
3506 3550 0.481128 GAACACCCCCAAAGGAGGAA 59.519 55.000 0.00 0.00 38.24 3.36
3507 3551 0.402861 AGAACACCCCCAAAGGAGGA 60.403 55.000 0.00 0.00 38.24 3.71
3508 3552 0.482887 AAGAACACCCCCAAAGGAGG 59.517 55.000 0.00 0.00 38.24 4.30
3509 3553 1.133482 ACAAGAACACCCCCAAAGGAG 60.133 52.381 0.00 0.00 38.24 3.69
3510 3554 0.930726 ACAAGAACACCCCCAAAGGA 59.069 50.000 0.00 0.00 38.24 3.36
3511 3555 2.668144 TACAAGAACACCCCCAAAGG 57.332 50.000 0.00 0.00 0.00 3.11
3512 3556 4.461431 GGTATTACAAGAACACCCCCAAAG 59.539 45.833 0.00 0.00 0.00 2.77
3513 3557 4.106663 AGGTATTACAAGAACACCCCCAAA 59.893 41.667 0.00 0.00 0.00 3.28
3514 3558 3.658705 AGGTATTACAAGAACACCCCCAA 59.341 43.478 0.00 0.00 0.00 4.12
3515 3559 3.261962 AGGTATTACAAGAACACCCCCA 58.738 45.455 0.00 0.00 0.00 4.96
3516 3560 3.522343 AGAGGTATTACAAGAACACCCCC 59.478 47.826 0.00 0.00 0.00 5.40
3517 3561 4.838904 AGAGGTATTACAAGAACACCCC 57.161 45.455 0.00 0.00 0.00 4.95
3518 3562 6.371825 CAGAAAGAGGTATTACAAGAACACCC 59.628 42.308 0.00 0.00 0.00 4.61
3519 3563 7.159372 TCAGAAAGAGGTATTACAAGAACACC 58.841 38.462 0.00 0.00 0.00 4.16
3520 3564 8.779354 ATCAGAAAGAGGTATTACAAGAACAC 57.221 34.615 0.00 0.00 0.00 3.32
3521 3565 8.593679 TGATCAGAAAGAGGTATTACAAGAACA 58.406 33.333 0.00 0.00 0.00 3.18
3522 3566 9.436957 TTGATCAGAAAGAGGTATTACAAGAAC 57.563 33.333 0.00 0.00 0.00 3.01
3524 3568 9.605275 CATTGATCAGAAAGAGGTATTACAAGA 57.395 33.333 0.00 0.00 0.00 3.02
3525 3569 9.605275 TCATTGATCAGAAAGAGGTATTACAAG 57.395 33.333 0.00 0.00 0.00 3.16
3526 3570 9.958180 TTCATTGATCAGAAAGAGGTATTACAA 57.042 29.630 0.00 0.00 0.00 2.41
3531 3575 8.910944 CCAAATTCATTGATCAGAAAGAGGTAT 58.089 33.333 0.00 0.00 41.85 2.73
3532 3576 7.148018 GCCAAATTCATTGATCAGAAAGAGGTA 60.148 37.037 0.00 0.00 41.85 3.08
3533 3577 6.350780 GCCAAATTCATTGATCAGAAAGAGGT 60.351 38.462 0.00 0.00 41.85 3.85
3534 3578 6.040878 GCCAAATTCATTGATCAGAAAGAGG 58.959 40.000 0.00 2.63 41.85 3.69
3535 3579 6.627243 TGCCAAATTCATTGATCAGAAAGAG 58.373 36.000 0.00 0.00 41.85 2.85
3536 3580 6.209986 ACTGCCAAATTCATTGATCAGAAAGA 59.790 34.615 13.38 0.00 41.85 2.52
3537 3581 6.395629 ACTGCCAAATTCATTGATCAGAAAG 58.604 36.000 13.38 0.00 41.85 2.62
3538 3582 6.349243 ACTGCCAAATTCATTGATCAGAAA 57.651 33.333 13.38 0.00 41.85 2.52
3539 3583 5.988310 ACTGCCAAATTCATTGATCAGAA 57.012 34.783 13.38 0.00 41.85 3.02
3540 3584 5.713389 AGAACTGCCAAATTCATTGATCAGA 59.287 36.000 13.38 0.00 41.85 3.27
3541 3585 5.962433 AGAACTGCCAAATTCATTGATCAG 58.038 37.500 0.00 0.00 41.85 2.90
3542 3586 5.988310 AGAACTGCCAAATTCATTGATCA 57.012 34.783 0.00 0.00 41.85 2.92
3543 3587 7.486647 ACATAGAACTGCCAAATTCATTGATC 58.513 34.615 0.00 0.00 41.85 2.92
3544 3588 7.414222 ACATAGAACTGCCAAATTCATTGAT 57.586 32.000 0.00 0.00 41.85 2.57
3545 3589 6.839124 ACATAGAACTGCCAAATTCATTGA 57.161 33.333 0.00 0.00 41.85 2.57
3546 3590 6.869913 ACAACATAGAACTGCCAAATTCATTG 59.130 34.615 0.00 0.00 38.84 2.82
3547 3591 6.996509 ACAACATAGAACTGCCAAATTCATT 58.003 32.000 0.00 0.00 0.00 2.57
3548 3592 6.435277 AGACAACATAGAACTGCCAAATTCAT 59.565 34.615 0.00 0.00 0.00 2.57
3549 3593 5.769662 AGACAACATAGAACTGCCAAATTCA 59.230 36.000 0.00 0.00 0.00 2.57
3550 3594 6.072508 TGAGACAACATAGAACTGCCAAATTC 60.073 38.462 0.00 0.00 0.00 2.17
3551 3595 5.769662 TGAGACAACATAGAACTGCCAAATT 59.230 36.000 0.00 0.00 0.00 1.82
3552 3596 5.316167 TGAGACAACATAGAACTGCCAAAT 58.684 37.500 0.00 0.00 0.00 2.32
3553 3597 4.713553 TGAGACAACATAGAACTGCCAAA 58.286 39.130 0.00 0.00 0.00 3.28
3554 3598 4.350368 TGAGACAACATAGAACTGCCAA 57.650 40.909 0.00 0.00 0.00 4.52
3555 3599 4.065088 GTTGAGACAACATAGAACTGCCA 58.935 43.478 9.32 0.00 0.00 4.92
3556 3600 4.065088 TGTTGAGACAACATAGAACTGCC 58.935 43.478 12.32 0.00 31.49 4.85
3557 3601 5.869753 ATGTTGAGACAACATAGAACTGC 57.130 39.130 22.78 0.00 38.94 4.40
3564 3608 3.196901 ACCGGCTATGTTGAGACAACATA 59.803 43.478 25.32 25.32 40.87 2.29
3565 3609 2.027192 ACCGGCTATGTTGAGACAACAT 60.027 45.455 25.70 25.70 42.82 2.71
3566 3610 1.346395 ACCGGCTATGTTGAGACAACA 59.654 47.619 17.39 17.39 39.66 3.33
3567 3611 2.000447 GACCGGCTATGTTGAGACAAC 59.000 52.381 0.00 7.55 39.66 3.32
3568 3612 1.066430 GGACCGGCTATGTTGAGACAA 60.066 52.381 0.00 0.00 39.66 3.18
3569 3613 0.535335 GGACCGGCTATGTTGAGACA 59.465 55.000 0.00 0.00 40.71 3.41
3570 3614 0.179081 GGGACCGGCTATGTTGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
3571 3615 0.616395 TGGGACCGGCTATGTTGAGA 60.616 55.000 0.00 0.00 0.00 3.27
3572 3616 0.251916 TTGGGACCGGCTATGTTGAG 59.748 55.000 0.00 0.00 0.00 3.02
3573 3617 0.251916 CTTGGGACCGGCTATGTTGA 59.748 55.000 0.00 0.00 0.00 3.18
3574 3618 1.376609 GCTTGGGACCGGCTATGTTG 61.377 60.000 0.00 0.00 0.00 3.33
3575 3619 1.077716 GCTTGGGACCGGCTATGTT 60.078 57.895 0.00 0.00 0.00 2.71
3576 3620 1.972660 GAGCTTGGGACCGGCTATGT 61.973 60.000 0.00 0.00 36.37 2.29
3577 3621 1.227674 GAGCTTGGGACCGGCTATG 60.228 63.158 0.00 0.00 36.37 2.23
3578 3622 2.797278 CGAGCTTGGGACCGGCTAT 61.797 63.158 0.00 0.00 36.37 2.97
3579 3623 3.458163 CGAGCTTGGGACCGGCTA 61.458 66.667 0.00 0.00 36.37 3.93
3588 3632 1.679032 CCTCCTTTTACCCGAGCTTGG 60.679 57.143 13.75 13.75 0.00 3.61
3589 3633 1.278127 TCCTCCTTTTACCCGAGCTTG 59.722 52.381 0.00 0.00 0.00 4.01
3590 3634 1.555533 CTCCTCCTTTTACCCGAGCTT 59.444 52.381 0.00 0.00 0.00 3.74
3591 3635 1.196012 CTCCTCCTTTTACCCGAGCT 58.804 55.000 0.00 0.00 0.00 4.09
3592 3636 0.178301 CCTCCTCCTTTTACCCGAGC 59.822 60.000 0.00 0.00 0.00 5.03
3593 3637 0.831307 CCCTCCTCCTTTTACCCGAG 59.169 60.000 0.00 0.00 0.00 4.63
3594 3638 0.117742 ACCCTCCTCCTTTTACCCGA 59.882 55.000 0.00 0.00 0.00 5.14
3595 3639 0.989602 AACCCTCCTCCTTTTACCCG 59.010 55.000 0.00 0.00 0.00 5.28
3596 3640 1.709115 ACAACCCTCCTCCTTTTACCC 59.291 52.381 0.00 0.00 0.00 3.69
3597 3641 2.374170 TCACAACCCTCCTCCTTTTACC 59.626 50.000 0.00 0.00 0.00 2.85
3598 3642 3.782656 TCACAACCCTCCTCCTTTTAC 57.217 47.619 0.00 0.00 0.00 2.01
3599 3643 4.473559 CCTATCACAACCCTCCTCCTTTTA 59.526 45.833 0.00 0.00 0.00 1.52
3600 3644 3.267031 CCTATCACAACCCTCCTCCTTTT 59.733 47.826 0.00 0.00 0.00 2.27
3601 3645 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
3602 3646 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
3603 3647 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
3604 3648 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
3605 3649 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
3606 3650 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
3607 3651 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
3608 3652 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
3609 3653 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
3610 3654 1.037579 GGCCAAGCCTATCACAACCC 61.038 60.000 0.00 0.00 46.69 4.11
3611 3655 2.493547 GGCCAAGCCTATCACAACC 58.506 57.895 0.00 0.00 46.69 3.77
3625 3669 2.808598 TTTTTACGTTGGCTGGCCA 58.191 47.368 10.55 10.55 45.63 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.