Multiple sequence alignment - TraesCS2A01G295900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G295900 chr2A 100.000 7895 0 0 1 7895 509069664 509077558 0.000000e+00 14580.0
1 TraesCS2A01G295900 chr2B 94.342 4684 127 47 2704 7340 447742359 447746951 0.000000e+00 7055.0
2 TraesCS2A01G295900 chr2B 94.088 2740 105 27 1 2703 447739477 447742196 0.000000e+00 4109.0
3 TraesCS2A01G295900 chr2B 92.623 122 9 0 7774 7895 447747212 447747333 8.140000e-40 176.0
4 TraesCS2A01G295900 chr2B 93.478 92 6 0 7422 7513 447747128 447747219 3.840000e-28 137.0
5 TraesCS2A01G295900 chr2D 94.538 4156 143 20 4 4113 376317003 376321120 0.000000e+00 6340.0
6 TraesCS2A01G295900 chr2D 94.651 2094 60 22 4977 7032 376322779 376324858 0.000000e+00 3199.0
7 TraesCS2A01G295900 chr2D 96.386 830 25 3 4106 4931 376321884 376322712 0.000000e+00 1362.0
8 TraesCS2A01G295900 chr5A 100.000 29 0 0 5433 5461 545057968 545057940 4.000000e-03 54.7
9 TraesCS2A01G295900 chr5A 100.000 28 0 0 5433 5460 620394847 620394820 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G295900 chr2A 509069664 509077558 7894 False 14580.000000 14580 100.000000 1 7895 1 chr2A.!!$F1 7894
1 TraesCS2A01G295900 chr2B 447739477 447747333 7856 False 2869.250000 7055 93.632750 1 7895 4 chr2B.!!$F1 7894
2 TraesCS2A01G295900 chr2D 376317003 376324858 7855 False 3633.666667 6340 95.191667 4 7032 3 chr2D.!!$F1 7028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 141 0.178944 TGAGAGGAAAGTCGGGGTGA 60.179 55.000 0.00 0.00 0.00 4.02 F
907 950 0.179137 TCTTCACGGACGCTGCTATG 60.179 55.000 0.00 0.00 0.00 2.23 F
908 951 1.756375 CTTCACGGACGCTGCTATGC 61.756 60.000 0.00 0.00 0.00 3.14 F
2751 2957 1.730547 GAATGGTGCACTTGTGCGC 60.731 57.895 25.47 25.47 43.86 6.09 F
3472 3681 1.872313 ACGTAGATGCTACCTAGACGC 59.128 52.381 0.00 0.00 0.00 5.19 F
5018 6029 1.154225 CCGATGGCGTGCAAAACTC 60.154 57.895 0.00 0.00 35.23 3.01 F
5184 6195 0.098728 GCCGTTTGAATAGCGCATGT 59.901 50.000 11.47 0.00 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 1918 1.285962 ACATTGGAGTCATCCTTGGGG 59.714 52.381 0.00 0.0 46.80 4.96 R
2560 2604 2.223112 GCACCATTCAATGTGCGTAGAG 60.223 50.000 8.55 0.0 33.04 2.43 R
3061 3269 6.169094 AGCCATATCATAAGTTTCTGGATCG 58.831 40.000 0.00 0.0 0.00 3.69 R
3651 3860 2.099098 AGCAACAAGTTTTGACGGGAAG 59.901 45.455 0.00 0.0 0.00 3.46 R
5165 6176 0.098728 ACATGCGCTATTCAAACGGC 59.901 50.000 9.73 0.0 0.00 5.68 R
6475 7495 0.106469 TCTCACTGCCTCTATCCGCT 60.106 55.000 0.00 0.0 0.00 5.52 R
7166 8246 0.179108 GCTCTACCACACGGTCCATC 60.179 60.000 0.00 0.0 44.71 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.331616 AAGGTAGGGGCACAACCATC 59.668 55.000 11.90 0.00 42.05 3.51
46 47 0.693622 TAGGGGCACAACCATCGAAA 59.306 50.000 0.00 0.00 42.05 3.46
50 51 0.804989 GGCACAACCATCGAAAGGAG 59.195 55.000 13.58 8.18 38.86 3.69
70 71 4.096984 GGAGATTGAGTTAAAGGGCACATG 59.903 45.833 0.00 0.00 0.00 3.21
139 141 0.178944 TGAGAGGAAAGTCGGGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
158 160 5.811399 GTGAAACCATACATCCATCGAAA 57.189 39.130 0.00 0.00 0.00 3.46
189 191 2.548067 GGACGACATCACAAGTTGGTCT 60.548 50.000 7.96 0.00 0.00 3.85
206 208 1.067776 GTCTGTGGGTAGACTCAACGG 60.068 57.143 0.00 0.00 42.93 4.44
245 247 9.533253 GCTACGGTAGATTAGTTGGTTTATTTA 57.467 33.333 19.02 0.00 0.00 1.40
284 286 9.783256 GGCGATTTTCTTTCTTTAATTAGCTTA 57.217 29.630 0.00 0.00 0.00 3.09
337 364 9.471702 AGCTTGATAAATGGGATAAATGGATAG 57.528 33.333 0.00 0.00 0.00 2.08
370 397 1.045911 GGCGAGAATGGAGAGGAGGT 61.046 60.000 0.00 0.00 0.00 3.85
373 400 1.127343 GAGAATGGAGAGGAGGTGGG 58.873 60.000 0.00 0.00 0.00 4.61
378 409 1.394963 GGAGAGGAGGTGGGGGTTA 59.605 63.158 0.00 0.00 0.00 2.85
414 445 7.915923 AGAATAGCGTGACATATGGATATAACG 59.084 37.037 7.80 8.35 0.00 3.18
537 575 5.906113 ATTGACCCACGCACAAATATTTA 57.094 34.783 0.00 0.00 0.00 1.40
542 580 6.600032 TGACCCACGCACAAATATTTAAGTAT 59.400 34.615 0.00 0.00 0.00 2.12
587 629 2.726989 CGCTGCAACATCTACTTTGCTG 60.727 50.000 7.73 8.06 46.83 4.41
616 658 7.421613 GCATAATAACTTACAAACGTCGTCAAG 59.578 37.037 0.00 3.13 0.00 3.02
619 661 3.784338 ACTTACAAACGTCGTCAAGGAA 58.216 40.909 0.00 0.00 0.00 3.36
665 707 4.567558 TGAAAAATTGCTGAACTTGCAGTG 59.432 37.500 0.00 0.00 41.71 3.66
707 749 2.423892 TGAGTCGAGATCACCTGCTTAC 59.576 50.000 0.00 0.00 0.00 2.34
725 767 9.906660 CCTGCTTACTATCAGACTAAAGAATAG 57.093 37.037 0.00 0.00 32.26 1.73
895 938 3.605406 CGACTACCGTCTATTCTTCACG 58.395 50.000 0.00 0.00 38.03 4.35
907 950 0.179137 TCTTCACGGACGCTGCTATG 60.179 55.000 0.00 0.00 0.00 2.23
908 951 1.756375 CTTCACGGACGCTGCTATGC 61.756 60.000 0.00 0.00 0.00 3.14
1232 1276 5.069914 ACCCTAGGAAATTTGGTTGTTGTTC 59.930 40.000 11.48 0.00 0.00 3.18
1350 1394 2.644676 GGAGCTAGGGTTTTGTGATCC 58.355 52.381 0.00 0.00 0.00 3.36
1527 1571 1.757699 GCGCCCCTATATCCCTCTAAG 59.242 57.143 0.00 0.00 0.00 2.18
1637 1681 2.979197 CTCGTCCAACTCGGCTCGT 61.979 63.158 0.00 0.00 34.80 4.18
1760 1804 2.544685 CTCTTGGCTTCAGGTGATACG 58.455 52.381 0.00 0.00 0.00 3.06
1874 1918 2.698274 GGGATCTGAGAGAGAGAAACCC 59.302 54.545 0.00 0.00 34.91 4.11
2056 2100 3.429822 CCACCAAAACCATCATCATCTGC 60.430 47.826 0.00 0.00 0.00 4.26
2127 2171 3.524095 TTGGATCTTCAAGAAGGCCAA 57.476 42.857 22.44 22.44 43.75 4.52
2560 2604 6.706270 TGCTTATATTTGCTAGTGGCTACTTC 59.294 38.462 8.46 1.45 42.39 3.01
2615 2659 6.539103 GGAGCTGTTTTTAGTTAGGAGTATGG 59.461 42.308 0.00 0.00 0.00 2.74
2751 2957 1.730547 GAATGGTGCACTTGTGCGC 60.731 57.895 25.47 25.47 43.86 6.09
3061 3269 4.418392 CAGTTGCTGATCAAGTTTATGGC 58.582 43.478 0.00 0.00 36.23 4.40
3209 3417 7.419204 CCAGTGAGTAGAGTAATAGCACTTAC 58.581 42.308 0.00 1.34 33.29 2.34
3295 3503 5.972107 ATTTCCTTGTCTCCTTGTTCATG 57.028 39.130 0.00 0.00 0.00 3.07
3395 3603 2.887152 AGAACACCAAGAAGGCATGAAC 59.113 45.455 0.00 0.00 43.14 3.18
3472 3681 1.872313 ACGTAGATGCTACCTAGACGC 59.128 52.381 0.00 0.00 0.00 5.19
3651 3860 3.172229 TGTTAAAAACACTTGCAGCCC 57.828 42.857 0.00 0.00 36.25 5.19
3819 4033 9.304731 GCATATTGCTGATTGACAATTTTCTTA 57.695 29.630 1.39 0.00 40.96 2.10
4213 5198 4.164604 AGTTATCGGCATAGTTAACCCCAA 59.835 41.667 0.88 0.00 30.57 4.12
4221 5206 4.157840 GCATAGTTAACCCCAAGGACTTTG 59.842 45.833 0.88 0.00 36.73 2.77
4232 5217 4.461431 CCCAAGGACTTTGTACCCATTTAC 59.539 45.833 0.00 0.00 34.87 2.01
4247 5232 9.933723 GTACCCATTTACGTAGGTCATTAATAT 57.066 33.333 7.45 0.00 33.70 1.28
4687 5672 4.813697 GCATTTTCCACCTGTCTAGATCTC 59.186 45.833 0.00 0.00 0.00 2.75
4988 5999 3.651803 TCCCGTGTAATTTTTGCCAAG 57.348 42.857 0.00 0.00 0.00 3.61
5016 6027 1.729131 CACCGATGGCGTGCAAAAC 60.729 57.895 0.00 0.00 35.23 2.43
5017 6028 1.896660 ACCGATGGCGTGCAAAACT 60.897 52.632 0.00 0.00 35.23 2.66
5018 6029 1.154225 CCGATGGCGTGCAAAACTC 60.154 57.895 0.00 0.00 35.23 3.01
5165 6176 0.914551 CGTCACGTTTCATCTAGCGG 59.085 55.000 0.00 0.00 0.00 5.52
5184 6195 0.098728 GCCGTTTGAATAGCGCATGT 59.901 50.000 11.47 0.00 0.00 3.21
5185 6196 1.467374 GCCGTTTGAATAGCGCATGTT 60.467 47.619 11.47 0.00 0.00 2.71
5226 6237 3.869246 GCTGCGCAACTAATCCTACTTAA 59.131 43.478 13.05 0.00 0.00 1.85
5446 6458 1.406860 TTTTGGCTGGGGCTCAAACC 61.407 55.000 0.00 0.00 37.88 3.27
5465 6477 2.224769 ACCAAACACACCCATAGTCAGG 60.225 50.000 0.00 0.00 0.00 3.86
5539 6551 7.617041 AAGTTAGCACCTTAGCTTCTTTATG 57.383 36.000 0.00 0.00 43.70 1.90
6186 7206 1.069049 GTGGGCTTGATGCTTGTGTTT 59.931 47.619 0.00 0.00 42.39 2.83
6381 7401 4.457257 GCAAGTAAGCATCCTTCTCTTGTT 59.543 41.667 12.64 0.00 40.78 2.83
6394 7414 6.263168 TCCTTCTCTTGTTGTTTGAGGAAATC 59.737 38.462 0.00 0.00 0.00 2.17
6463 7483 3.128764 CGTGCTCTGTAGTTAGTGGATCA 59.871 47.826 0.00 0.00 0.00 2.92
6475 7495 0.107703 GTGGATCATCTGGTTCGGCA 60.108 55.000 0.00 0.00 0.00 5.69
6562 7588 2.450476 CTTCTGGCAATGGGCTTTAGT 58.550 47.619 0.00 0.00 44.01 2.24
6756 7785 2.450609 TCAGGCGTAACTTTCAGGAC 57.549 50.000 0.00 0.00 0.00 3.85
6757 7786 1.968493 TCAGGCGTAACTTTCAGGACT 59.032 47.619 0.00 0.00 0.00 3.85
6758 7787 3.159472 TCAGGCGTAACTTTCAGGACTA 58.841 45.455 0.00 0.00 0.00 2.59
6759 7788 3.057033 TCAGGCGTAACTTTCAGGACTAC 60.057 47.826 0.00 0.00 0.00 2.73
6760 7789 2.895404 AGGCGTAACTTTCAGGACTACA 59.105 45.455 0.00 0.00 0.00 2.74
6814 7843 0.606130 ACATCGATGTTGTGCTGCCA 60.606 50.000 25.18 0.00 37.90 4.92
7036 8113 1.112315 AAAACGAGCCATGCCCAACA 61.112 50.000 0.00 0.00 0.00 3.33
7040 8117 1.588082 GAGCCATGCCCAACACTTG 59.412 57.895 0.00 0.00 0.00 3.16
7052 8131 1.610038 CAACACTTGCAGAATGAGGCA 59.390 47.619 1.38 0.00 39.69 4.75
7067 8146 0.601558 AGGCATGCTTTGAGCTGTTG 59.398 50.000 18.92 0.00 42.97 3.33
7085 8164 6.005583 CTGTTGAGCAGCTTAAAATGAAGA 57.994 37.500 0.23 0.00 38.52 2.87
7100 8180 3.363341 TGAAGAATCGTTTTGGGCAAC 57.637 42.857 0.00 0.00 0.00 4.17
7114 8194 3.355378 TGGGCAACTAGATTTCACATGG 58.645 45.455 0.00 0.00 0.00 3.66
7116 8196 3.378427 GGGCAACTAGATTTCACATGGTC 59.622 47.826 0.00 0.00 0.00 4.02
7117 8197 4.009675 GGCAACTAGATTTCACATGGTCA 58.990 43.478 0.00 0.00 0.00 4.02
7125 8205 8.708378 ACTAGATTTCACATGGTCATGAGATTA 58.292 33.333 16.77 6.96 41.20 1.75
7142 8222 6.812998 TGAGATTATAGGGTAGGAAAACACG 58.187 40.000 0.00 0.00 0.00 4.49
7157 8237 5.220777 GGAAAACACGTTCAGAATCACAGAA 60.221 40.000 0.00 0.00 0.00 3.02
7166 8246 6.346919 CGTTCAGAATCACAGAAGTTTGTAGG 60.347 42.308 0.00 0.00 0.00 3.18
7173 8253 4.003648 CACAGAAGTTTGTAGGATGGACC 58.996 47.826 0.00 0.00 39.35 4.46
7190 8270 3.832704 CCGTGTGGTAGAGCAATGA 57.167 52.632 0.00 0.00 0.00 2.57
7191 8271 1.359848 CCGTGTGGTAGAGCAATGAC 58.640 55.000 0.00 0.00 0.00 3.06
7192 8272 0.992072 CGTGTGGTAGAGCAATGACG 59.008 55.000 0.00 0.00 0.00 4.35
7193 8273 1.668919 CGTGTGGTAGAGCAATGACGT 60.669 52.381 0.00 0.00 0.00 4.34
7212 8292 4.186159 ACGTGTATTCGAATAAACCAGGG 58.814 43.478 25.81 17.01 34.70 4.45
7221 8301 1.222567 ATAAACCAGGGCCGATCCTT 58.777 50.000 0.00 0.00 34.31 3.36
7222 8302 0.996583 TAAACCAGGGCCGATCCTTT 59.003 50.000 0.00 0.00 34.31 3.11
7243 8323 5.348259 TTCCAAATTAGTTCTCCCCCTTT 57.652 39.130 0.00 0.00 0.00 3.11
7266 8346 2.021457 CTCGACCCTTCTCCTCTCTTC 58.979 57.143 0.00 0.00 0.00 2.87
7281 8361 3.947834 CTCTCTTCTCCTTGAGAGTCTCC 59.052 52.174 17.57 0.38 46.58 3.71
7282 8362 3.023832 CTCTTCTCCTTGAGAGTCTCCC 58.976 54.545 17.57 0.00 43.71 4.30
7283 8363 1.748493 CTTCTCCTTGAGAGTCTCCCG 59.252 57.143 17.57 8.09 43.71 5.14
7284 8364 0.699399 TCTCCTTGAGAGTCTCCCGT 59.301 55.000 17.57 0.00 43.71 5.28
7285 8365 0.814457 CTCCTTGAGAGTCTCCCGTG 59.186 60.000 17.57 3.98 37.87 4.94
7286 8366 0.404426 TCCTTGAGAGTCTCCCGTGA 59.596 55.000 17.57 6.23 0.00 4.35
7340 8420 2.134287 GCTGGCCGGAGTGGAGATA 61.134 63.158 18.31 0.00 42.00 1.98
7341 8421 2.045280 CTGGCCGGAGTGGAGATAG 58.955 63.158 5.28 0.00 42.00 2.08
7342 8422 0.757188 CTGGCCGGAGTGGAGATAGT 60.757 60.000 5.28 0.00 42.00 2.12
7343 8423 0.554305 TGGCCGGAGTGGAGATAGTA 59.446 55.000 5.05 0.00 42.00 1.82
7358 8484 8.136800 GTGGAGATAGTAGTTTAGGTTTAGCTC 58.863 40.741 0.00 0.00 0.00 4.09
7359 8485 7.287235 TGGAGATAGTAGTTTAGGTTTAGCTCC 59.713 40.741 0.00 0.00 41.62 4.70
7380 8507 0.829990 CTTTGGTGGTGTTTGGCCTT 59.170 50.000 3.32 0.00 0.00 4.35
7393 8520 0.184933 TGGCCTTGTGCTAGTTTGGT 59.815 50.000 3.32 0.00 40.92 3.67
7401 8528 1.200020 GTGCTAGTTTGGTGTCATGCC 59.800 52.381 0.00 0.00 0.00 4.40
7403 8530 0.447801 CTAGTTTGGTGTCATGCCGC 59.552 55.000 0.00 0.00 0.00 6.53
7411 8538 1.987306 TGTCATGCCGCTAGGGTGA 60.987 57.895 6.02 0.36 38.44 4.02
7412 8539 1.227380 GTCATGCCGCTAGGGTGAG 60.227 63.158 6.02 0.00 38.44 3.51
7413 8540 2.590007 CATGCCGCTAGGGTGAGC 60.590 66.667 6.02 2.97 38.44 4.26
7414 8541 2.765807 ATGCCGCTAGGGTGAGCT 60.766 61.111 6.02 0.00 40.51 4.09
7415 8542 1.457643 ATGCCGCTAGGGTGAGCTA 60.458 57.895 6.02 0.00 40.51 3.32
7416 8543 1.467678 ATGCCGCTAGGGTGAGCTAG 61.468 60.000 6.02 0.00 40.51 3.42
7417 8544 2.731374 CCGCTAGGGTGAGCTAGC 59.269 66.667 6.62 6.62 43.53 3.42
7419 8546 3.843304 GCTAGGGTGAGCTAGCGA 58.157 61.111 9.55 0.00 39.04 4.93
7451 8626 0.631753 AGGAATGGAGGAGGAGACGA 59.368 55.000 0.00 0.00 0.00 4.20
7479 8654 4.202060 GGCAAAGCCCTTCTAAATAAGCTC 60.202 45.833 0.00 0.00 44.06 4.09
7490 8665 1.132500 AATAAGCTCGCTAAGGCCCT 58.868 50.000 0.00 0.00 34.44 5.19
7491 8666 1.132500 ATAAGCTCGCTAAGGCCCTT 58.868 50.000 0.00 0.00 34.44 3.95
7495 8670 1.400530 GCTCGCTAAGGCCCTTAGGA 61.401 60.000 27.62 21.27 42.43 2.94
7505 8680 0.032815 GCCCTTAGGAGAGACGATGC 59.967 60.000 0.00 0.00 33.47 3.91
7506 8681 0.312416 CCCTTAGGAGAGACGATGCG 59.688 60.000 0.00 0.00 33.47 4.73
7507 8682 1.309950 CCTTAGGAGAGACGATGCGA 58.690 55.000 0.00 0.00 0.00 5.10
7508 8683 1.676529 CCTTAGGAGAGACGATGCGAA 59.323 52.381 0.00 0.00 0.00 4.70
7509 8684 2.287308 CCTTAGGAGAGACGATGCGAAG 60.287 54.545 0.00 0.00 0.00 3.79
7510 8685 1.309950 TAGGAGAGACGATGCGAAGG 58.690 55.000 0.00 0.00 0.00 3.46
7511 8686 1.066587 GGAGAGACGATGCGAAGGG 59.933 63.158 0.00 0.00 0.00 3.95
7512 8687 1.590259 GAGAGACGATGCGAAGGGC 60.590 63.158 0.00 0.00 43.96 5.19
7513 8688 2.586357 GAGACGATGCGAAGGGCC 60.586 66.667 0.00 0.00 42.61 5.80
7514 8689 3.077556 AGACGATGCGAAGGGCCT 61.078 61.111 0.00 0.00 42.61 5.19
7515 8690 2.586357 GACGATGCGAAGGGCCTC 60.586 66.667 6.46 0.00 42.61 4.70
7516 8691 4.162690 ACGATGCGAAGGGCCTCC 62.163 66.667 6.46 0.00 42.61 4.30
7517 8692 4.918201 CGATGCGAAGGGCCTCCC 62.918 72.222 6.46 0.29 45.90 4.30
7526 8701 2.045242 GGGCCTCCCGTTTTCTCC 60.045 66.667 0.84 0.00 32.13 3.71
7527 8702 2.754375 GGCCTCCCGTTTTCTCCA 59.246 61.111 0.00 0.00 0.00 3.86
7528 8703 1.303282 GGCCTCCCGTTTTCTCCAT 59.697 57.895 0.00 0.00 0.00 3.41
7529 8704 1.032114 GGCCTCCCGTTTTCTCCATG 61.032 60.000 0.00 0.00 0.00 3.66
7530 8705 1.657751 GCCTCCCGTTTTCTCCATGC 61.658 60.000 0.00 0.00 0.00 4.06
7531 8706 1.032114 CCTCCCGTTTTCTCCATGCC 61.032 60.000 0.00 0.00 0.00 4.40
7532 8707 1.369091 CTCCCGTTTTCTCCATGCCG 61.369 60.000 0.00 0.00 0.00 5.69
7533 8708 1.674322 CCCGTTTTCTCCATGCCGT 60.674 57.895 0.00 0.00 0.00 5.68
7534 8709 1.241315 CCCGTTTTCTCCATGCCGTT 61.241 55.000 0.00 0.00 0.00 4.44
7535 8710 0.109781 CCGTTTTCTCCATGCCGTTG 60.110 55.000 0.00 0.00 0.00 4.10
7536 8711 0.871722 CGTTTTCTCCATGCCGTTGA 59.128 50.000 0.00 0.00 0.00 3.18
7537 8712 1.135972 CGTTTTCTCCATGCCGTTGAG 60.136 52.381 0.00 0.00 0.00 3.02
7538 8713 1.200020 GTTTTCTCCATGCCGTTGAGG 59.800 52.381 0.00 0.00 44.97 3.86
7539 8714 0.400213 TTTCTCCATGCCGTTGAGGT 59.600 50.000 0.00 0.00 43.70 3.85
7540 8715 0.321564 TTCTCCATGCCGTTGAGGTG 60.322 55.000 0.00 0.00 43.70 4.00
7541 8716 1.746615 CTCCATGCCGTTGAGGTGG 60.747 63.158 0.00 0.00 43.70 4.61
7548 8723 4.351938 CGTTGAGGTGGCGGACGA 62.352 66.667 0.00 0.00 35.90 4.20
7549 8724 2.029964 GTTGAGGTGGCGGACGAA 59.970 61.111 0.00 0.00 0.00 3.85
7550 8725 2.027625 GTTGAGGTGGCGGACGAAG 61.028 63.158 0.00 0.00 0.00 3.79
7551 8726 2.204461 TTGAGGTGGCGGACGAAGA 61.204 57.895 0.00 0.00 0.00 2.87
7552 8727 1.750341 TTGAGGTGGCGGACGAAGAA 61.750 55.000 0.00 0.00 0.00 2.52
7553 8728 1.446272 GAGGTGGCGGACGAAGAAG 60.446 63.158 0.00 0.00 0.00 2.85
7554 8729 3.119096 GGTGGCGGACGAAGAAGC 61.119 66.667 0.00 0.00 0.00 3.86
7555 8730 2.357034 GTGGCGGACGAAGAAGCA 60.357 61.111 0.00 0.00 0.00 3.91
7556 8731 2.048222 TGGCGGACGAAGAAGCAG 60.048 61.111 0.00 0.00 0.00 4.24
7557 8732 2.048127 GGCGGACGAAGAAGCAGT 60.048 61.111 0.00 0.00 0.00 4.40
7558 8733 2.383527 GGCGGACGAAGAAGCAGTG 61.384 63.158 0.00 0.00 0.00 3.66
7559 8734 2.383527 GCGGACGAAGAAGCAGTGG 61.384 63.158 0.00 0.00 0.00 4.00
7560 8735 1.738099 CGGACGAAGAAGCAGTGGG 60.738 63.158 0.00 0.00 0.00 4.61
7561 8736 1.376037 GGACGAAGAAGCAGTGGGG 60.376 63.158 0.00 0.00 0.00 4.96
7562 8737 1.671742 GACGAAGAAGCAGTGGGGA 59.328 57.895 0.00 0.00 0.00 4.81
7563 8738 0.250513 GACGAAGAAGCAGTGGGGAT 59.749 55.000 0.00 0.00 0.00 3.85
7564 8739 0.250513 ACGAAGAAGCAGTGGGGATC 59.749 55.000 0.00 0.00 0.00 3.36
7565 8740 0.462759 CGAAGAAGCAGTGGGGATCC 60.463 60.000 1.92 1.92 0.00 3.36
7566 8741 0.915364 GAAGAAGCAGTGGGGATCCT 59.085 55.000 12.58 0.00 0.00 3.24
7567 8742 1.283321 GAAGAAGCAGTGGGGATCCTT 59.717 52.381 12.58 0.00 0.00 3.36
7568 8743 0.622665 AGAAGCAGTGGGGATCCTTG 59.377 55.000 12.58 6.71 0.00 3.61
7569 8744 0.329596 GAAGCAGTGGGGATCCTTGT 59.670 55.000 12.58 0.00 0.00 3.16
7570 8745 0.779997 AAGCAGTGGGGATCCTTGTT 59.220 50.000 12.58 0.96 0.00 2.83
7571 8746 0.779997 AGCAGTGGGGATCCTTGTTT 59.220 50.000 12.58 0.00 0.00 2.83
7572 8747 1.177401 GCAGTGGGGATCCTTGTTTC 58.823 55.000 12.58 0.00 0.00 2.78
7573 8748 1.453155 CAGTGGGGATCCTTGTTTCG 58.547 55.000 12.58 0.00 0.00 3.46
7574 8749 1.064825 AGTGGGGATCCTTGTTTCGT 58.935 50.000 12.58 0.00 0.00 3.85
7575 8750 1.423921 AGTGGGGATCCTTGTTTCGTT 59.576 47.619 12.58 0.00 0.00 3.85
7576 8751 2.158519 AGTGGGGATCCTTGTTTCGTTT 60.159 45.455 12.58 0.00 0.00 3.60
7577 8752 2.030274 GTGGGGATCCTTGTTTCGTTTG 60.030 50.000 12.58 0.00 0.00 2.93
7578 8753 2.235891 GGGGATCCTTGTTTCGTTTGT 58.764 47.619 12.58 0.00 0.00 2.83
7579 8754 2.228103 GGGGATCCTTGTTTCGTTTGTC 59.772 50.000 12.58 0.00 0.00 3.18
7580 8755 3.146847 GGGATCCTTGTTTCGTTTGTCT 58.853 45.455 12.58 0.00 0.00 3.41
7581 8756 3.188667 GGGATCCTTGTTTCGTTTGTCTC 59.811 47.826 12.58 0.00 0.00 3.36
7582 8757 3.120649 GGATCCTTGTTTCGTTTGTCTCG 60.121 47.826 3.84 0.00 0.00 4.04
7583 8758 2.896168 TCCTTGTTTCGTTTGTCTCGT 58.104 42.857 0.00 0.00 0.00 4.18
7584 8759 2.605818 TCCTTGTTTCGTTTGTCTCGTG 59.394 45.455 0.00 0.00 0.00 4.35
7585 8760 2.286184 CCTTGTTTCGTTTGTCTCGTGG 60.286 50.000 0.00 0.00 0.00 4.94
7586 8761 0.653636 TGTTTCGTTTGTCTCGTGGC 59.346 50.000 0.00 0.00 0.00 5.01
7587 8762 0.382636 GTTTCGTTTGTCTCGTGGCG 60.383 55.000 0.00 0.00 0.00 5.69
7588 8763 1.492319 TTTCGTTTGTCTCGTGGCGG 61.492 55.000 0.00 0.00 0.00 6.13
7589 8764 3.411351 CGTTTGTCTCGTGGCGGG 61.411 66.667 0.00 0.00 0.00 6.13
7590 8765 2.280592 GTTTGTCTCGTGGCGGGT 60.281 61.111 0.00 0.00 0.00 5.28
7591 8766 1.890510 GTTTGTCTCGTGGCGGGTT 60.891 57.895 0.00 0.00 0.00 4.11
7592 8767 1.153127 TTTGTCTCGTGGCGGGTTT 60.153 52.632 0.00 0.00 0.00 3.27
7593 8768 1.440938 TTTGTCTCGTGGCGGGTTTG 61.441 55.000 0.00 0.00 0.00 2.93
7594 8769 3.723348 GTCTCGTGGCGGGTTTGC 61.723 66.667 0.00 0.00 0.00 3.68
7602 8777 3.423154 GCGGGTTTGCCTCGTCAG 61.423 66.667 0.00 0.00 33.15 3.51
7603 8778 2.342279 CGGGTTTGCCTCGTCAGA 59.658 61.111 0.00 0.00 34.45 3.27
7604 8779 1.079127 CGGGTTTGCCTCGTCAGAT 60.079 57.895 0.00 0.00 34.45 2.90
7605 8780 1.084370 CGGGTTTGCCTCGTCAGATC 61.084 60.000 0.00 0.00 34.45 2.75
7606 8781 0.744771 GGGTTTGCCTCGTCAGATCC 60.745 60.000 0.00 0.00 34.45 3.36
7607 8782 0.744771 GGTTTGCCTCGTCAGATCCC 60.745 60.000 0.00 0.00 0.00 3.85
7608 8783 0.036388 GTTTGCCTCGTCAGATCCCA 60.036 55.000 0.00 0.00 0.00 4.37
7609 8784 0.250234 TTTGCCTCGTCAGATCCCAG 59.750 55.000 0.00 0.00 0.00 4.45
7610 8785 2.107953 GCCTCGTCAGATCCCAGC 59.892 66.667 0.00 0.00 0.00 4.85
7611 8786 2.430610 GCCTCGTCAGATCCCAGCT 61.431 63.158 0.00 0.00 0.00 4.24
7612 8787 1.965754 GCCTCGTCAGATCCCAGCTT 61.966 60.000 0.00 0.00 0.00 3.74
7613 8788 0.103937 CCTCGTCAGATCCCAGCTTC 59.896 60.000 0.00 0.00 0.00 3.86
7614 8789 0.103937 CTCGTCAGATCCCAGCTTCC 59.896 60.000 0.00 0.00 0.00 3.46
7615 8790 1.227089 CGTCAGATCCCAGCTTCCG 60.227 63.158 0.00 0.00 0.00 4.30
7616 8791 1.667154 CGTCAGATCCCAGCTTCCGA 61.667 60.000 0.00 0.00 0.00 4.55
7617 8792 0.179097 GTCAGATCCCAGCTTCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
7618 8793 1.227089 CAGATCCCAGCTTCCGACG 60.227 63.158 0.00 0.00 0.00 5.12
7619 8794 1.379977 AGATCCCAGCTTCCGACGA 60.380 57.895 0.00 0.00 0.00 4.20
7620 8795 1.066587 GATCCCAGCTTCCGACGAG 59.933 63.158 0.00 0.00 0.00 4.18
7621 8796 2.356818 GATCCCAGCTTCCGACGAGG 62.357 65.000 0.00 0.00 42.97 4.63
7622 8797 3.382832 CCCAGCTTCCGACGAGGT 61.383 66.667 0.00 0.00 41.99 3.85
7623 8798 2.657237 CCAGCTTCCGACGAGGTT 59.343 61.111 0.00 0.00 41.99 3.50
7624 8799 1.738099 CCAGCTTCCGACGAGGTTG 60.738 63.158 0.00 0.00 41.99 3.77
7625 8800 1.738099 CAGCTTCCGACGAGGTTGG 60.738 63.158 0.00 0.00 41.99 3.77
7626 8801 3.119096 GCTTCCGACGAGGTTGGC 61.119 66.667 0.00 0.00 41.99 4.52
7627 8802 2.809601 CTTCCGACGAGGTTGGCG 60.810 66.667 0.00 0.00 41.99 5.69
7628 8803 3.569049 CTTCCGACGAGGTTGGCGT 62.569 63.158 0.00 0.00 45.79 5.68
7635 8810 2.202892 GAGGTTGGCGTCGATCCC 60.203 66.667 0.00 1.30 0.00 3.85
7636 8811 2.683933 AGGTTGGCGTCGATCCCT 60.684 61.111 0.00 0.00 0.00 4.20
7637 8812 2.511600 GGTTGGCGTCGATCCCTG 60.512 66.667 0.00 0.00 0.00 4.45
7638 8813 2.577059 GTTGGCGTCGATCCCTGA 59.423 61.111 0.00 0.00 0.00 3.86
7639 8814 1.810030 GTTGGCGTCGATCCCTGAC 60.810 63.158 0.00 2.18 0.00 3.51
7640 8815 1.982395 TTGGCGTCGATCCCTGACT 60.982 57.895 0.00 0.00 34.17 3.41
7641 8816 1.541310 TTGGCGTCGATCCCTGACTT 61.541 55.000 0.00 0.00 34.17 3.01
7642 8817 1.519455 GGCGTCGATCCCTGACTTG 60.519 63.158 0.00 0.00 34.17 3.16
7643 8818 1.215647 GCGTCGATCCCTGACTTGT 59.784 57.895 0.00 0.00 34.17 3.16
7644 8819 1.078759 GCGTCGATCCCTGACTTGTG 61.079 60.000 0.00 0.00 34.17 3.33
7645 8820 0.458543 CGTCGATCCCTGACTTGTGG 60.459 60.000 0.00 0.00 34.17 4.17
7646 8821 0.108138 GTCGATCCCTGACTTGTGGG 60.108 60.000 0.00 0.00 44.66 4.61
7649 8824 4.232905 TCCCTGACTTGTGGGAGG 57.767 61.111 0.00 0.00 46.69 4.30
7650 8825 1.238938 TCCCTGACTTGTGGGAGGT 59.761 57.895 0.00 0.00 46.69 3.85
7651 8826 0.401395 TCCCTGACTTGTGGGAGGTT 60.401 55.000 0.00 0.00 46.69 3.50
7652 8827 0.036875 CCCTGACTTGTGGGAGGTTC 59.963 60.000 0.00 0.00 46.15 3.62
7653 8828 1.059913 CCTGACTTGTGGGAGGTTCT 58.940 55.000 0.00 0.00 0.00 3.01
7654 8829 1.421646 CCTGACTTGTGGGAGGTTCTT 59.578 52.381 0.00 0.00 0.00 2.52
7655 8830 2.158608 CCTGACTTGTGGGAGGTTCTTT 60.159 50.000 0.00 0.00 0.00 2.52
7656 8831 2.880890 CTGACTTGTGGGAGGTTCTTTG 59.119 50.000 0.00 0.00 0.00 2.77
7657 8832 2.230660 GACTTGTGGGAGGTTCTTTGG 58.769 52.381 0.00 0.00 0.00 3.28
7658 8833 0.961753 CTTGTGGGAGGTTCTTTGGC 59.038 55.000 0.00 0.00 0.00 4.52
7659 8834 0.555769 TTGTGGGAGGTTCTTTGGCT 59.444 50.000 0.00 0.00 0.00 4.75
7660 8835 0.110486 TGTGGGAGGTTCTTTGGCTC 59.890 55.000 0.00 0.00 0.00 4.70
7661 8836 0.955919 GTGGGAGGTTCTTTGGCTCG 60.956 60.000 0.00 0.00 0.00 5.03
7662 8837 1.375326 GGGAGGTTCTTTGGCTCGT 59.625 57.895 0.00 0.00 0.00 4.18
7663 8838 0.673956 GGGAGGTTCTTTGGCTCGTC 60.674 60.000 0.00 0.00 0.00 4.20
7664 8839 0.034896 GGAGGTTCTTTGGCTCGTCA 59.965 55.000 0.00 0.00 0.00 4.35
7665 8840 1.433534 GAGGTTCTTTGGCTCGTCAG 58.566 55.000 0.00 0.00 0.00 3.51
7666 8841 1.000955 GAGGTTCTTTGGCTCGTCAGA 59.999 52.381 0.00 0.00 0.00 3.27
7676 8851 2.871099 TCGTCAGAGCTGTCGAGC 59.129 61.111 14.06 0.00 43.69 5.03
7689 8864 4.214383 CGAGCGGCGAACATGCTG 62.214 66.667 12.98 0.00 44.57 4.41
7690 8865 3.121030 GAGCGGCGAACATGCTGT 61.121 61.111 12.98 0.00 43.32 4.40
7691 8866 2.669569 AGCGGCGAACATGCTGTT 60.670 55.556 12.98 1.82 44.37 3.16
7692 8867 2.502510 GCGGCGAACATGCTGTTG 60.503 61.111 12.98 0.00 41.28 3.33
7693 8868 2.176546 CGGCGAACATGCTGTTGG 59.823 61.111 0.00 6.50 41.28 3.77
7694 8869 2.568090 GGCGAACATGCTGTTGGG 59.432 61.111 6.31 1.06 41.28 4.12
7695 8870 2.126346 GCGAACATGCTGTTGGGC 60.126 61.111 6.31 6.23 41.28 5.36
7696 8871 2.629656 GCGAACATGCTGTTGGGCT 61.630 57.895 6.31 0.00 41.28 5.19
7697 8872 1.959085 CGAACATGCTGTTGGGCTT 59.041 52.632 6.31 0.00 41.28 4.35
7698 8873 0.109597 CGAACATGCTGTTGGGCTTC 60.110 55.000 6.31 0.00 41.28 3.86
7699 8874 0.109597 GAACATGCTGTTGGGCTTCG 60.110 55.000 6.31 0.00 41.28 3.79
7700 8875 0.823356 AACATGCTGTTGGGCTTCGT 60.823 50.000 0.00 0.00 39.45 3.85
7701 8876 1.210931 CATGCTGTTGGGCTTCGTG 59.789 57.895 0.00 0.00 0.00 4.35
7702 8877 1.228245 ATGCTGTTGGGCTTCGTGT 60.228 52.632 0.00 0.00 0.00 4.49
7703 8878 1.518056 ATGCTGTTGGGCTTCGTGTG 61.518 55.000 0.00 0.00 0.00 3.82
7704 8879 2.186826 GCTGTTGGGCTTCGTGTGT 61.187 57.895 0.00 0.00 0.00 3.72
7705 8880 0.882927 GCTGTTGGGCTTCGTGTGTA 60.883 55.000 0.00 0.00 0.00 2.90
7706 8881 1.808411 CTGTTGGGCTTCGTGTGTAT 58.192 50.000 0.00 0.00 0.00 2.29
7707 8882 1.732259 CTGTTGGGCTTCGTGTGTATC 59.268 52.381 0.00 0.00 0.00 2.24
7708 8883 1.070914 TGTTGGGCTTCGTGTGTATCA 59.929 47.619 0.00 0.00 0.00 2.15
7709 8884 2.290008 TGTTGGGCTTCGTGTGTATCAT 60.290 45.455 0.00 0.00 0.00 2.45
7710 8885 2.309528 TGGGCTTCGTGTGTATCATC 57.690 50.000 0.00 0.00 0.00 2.92
7711 8886 1.552792 TGGGCTTCGTGTGTATCATCA 59.447 47.619 0.00 0.00 0.00 3.07
7712 8887 2.205074 GGGCTTCGTGTGTATCATCAG 58.795 52.381 0.00 0.00 0.00 2.90
7713 8888 1.594862 GGCTTCGTGTGTATCATCAGC 59.405 52.381 0.00 0.00 0.00 4.26
7714 8889 1.256376 GCTTCGTGTGTATCATCAGCG 59.744 52.381 0.00 0.00 0.00 5.18
7715 8890 1.854743 CTTCGTGTGTATCATCAGCGG 59.145 52.381 0.00 0.00 0.00 5.52
7716 8891 0.815095 TCGTGTGTATCATCAGCGGT 59.185 50.000 0.00 0.00 0.00 5.68
7717 8892 0.923403 CGTGTGTATCATCAGCGGTG 59.077 55.000 8.67 8.67 0.00 4.94
7718 8893 1.290203 GTGTGTATCATCAGCGGTGG 58.710 55.000 15.67 0.00 0.00 4.61
7719 8894 0.901827 TGTGTATCATCAGCGGTGGT 59.098 50.000 15.67 4.08 0.00 4.16
7720 8895 1.277842 TGTGTATCATCAGCGGTGGTT 59.722 47.619 15.67 0.00 0.00 3.67
7721 8896 2.498078 TGTGTATCATCAGCGGTGGTTA 59.502 45.455 15.67 0.00 0.00 2.85
7722 8897 3.133901 TGTGTATCATCAGCGGTGGTTAT 59.866 43.478 15.67 7.32 0.00 1.89
7723 8898 3.494626 GTGTATCATCAGCGGTGGTTATG 59.505 47.826 15.67 11.33 0.00 1.90
7724 8899 2.260844 ATCATCAGCGGTGGTTATGG 57.739 50.000 15.67 0.00 0.00 2.74
7725 8900 0.180171 TCATCAGCGGTGGTTATGGG 59.820 55.000 15.67 0.00 0.00 4.00
7726 8901 0.819259 CATCAGCGGTGGTTATGGGG 60.819 60.000 15.67 0.00 0.00 4.96
7727 8902 0.986019 ATCAGCGGTGGTTATGGGGA 60.986 55.000 15.67 0.00 0.00 4.81
7728 8903 1.153168 CAGCGGTGGTTATGGGGAG 60.153 63.158 6.74 0.00 0.00 4.30
7729 8904 2.192175 GCGGTGGTTATGGGGAGG 59.808 66.667 0.00 0.00 0.00 4.30
7730 8905 2.192175 CGGTGGTTATGGGGAGGC 59.808 66.667 0.00 0.00 0.00 4.70
7731 8906 2.375345 CGGTGGTTATGGGGAGGCT 61.375 63.158 0.00 0.00 0.00 4.58
7732 8907 1.052124 CGGTGGTTATGGGGAGGCTA 61.052 60.000 0.00 0.00 0.00 3.93
7733 8908 1.218844 GGTGGTTATGGGGAGGCTAA 58.781 55.000 0.00 0.00 0.00 3.09
7734 8909 1.143073 GGTGGTTATGGGGAGGCTAAG 59.857 57.143 0.00 0.00 0.00 2.18
7735 8910 1.143073 GTGGTTATGGGGAGGCTAAGG 59.857 57.143 0.00 0.00 0.00 2.69
7736 8911 0.110678 GGTTATGGGGAGGCTAAGGC 59.889 60.000 0.00 0.00 37.82 4.35
7737 8912 1.141185 GTTATGGGGAGGCTAAGGCT 58.859 55.000 0.00 0.00 42.48 4.58
7744 8919 4.058434 AGGCTAAGGCTCCAGTCC 57.942 61.111 0.00 0.00 38.73 3.85
7745 8920 1.394151 AGGCTAAGGCTCCAGTCCT 59.606 57.895 0.00 0.00 38.73 3.85
7746 8921 0.689412 AGGCTAAGGCTCCAGTCCTC 60.689 60.000 0.00 0.00 38.73 3.71
7747 8922 1.439644 GCTAAGGCTCCAGTCCTCG 59.560 63.158 0.00 0.00 32.45 4.63
7748 8923 1.439644 CTAAGGCTCCAGTCCTCGC 59.560 63.158 0.00 0.00 32.45 5.03
7749 8924 2.022240 CTAAGGCTCCAGTCCTCGCC 62.022 65.000 0.00 0.00 42.79 5.54
7752 8927 4.500116 GCTCCAGTCCTCGCCGAC 62.500 72.222 0.00 0.00 0.00 4.79
7753 8928 4.180946 CTCCAGTCCTCGCCGACG 62.181 72.222 0.00 0.00 37.85 5.12
7763 8938 4.862092 CGCCGACGAGCTGCTGAT 62.862 66.667 7.01 0.00 43.93 2.90
7764 8939 2.510238 GCCGACGAGCTGCTGATT 60.510 61.111 7.01 0.00 0.00 2.57
7765 8940 2.520904 GCCGACGAGCTGCTGATTC 61.521 63.158 7.01 0.00 0.00 2.52
7766 8941 1.880340 CCGACGAGCTGCTGATTCC 60.880 63.158 7.01 0.00 0.00 3.01
7767 8942 1.140589 CGACGAGCTGCTGATTCCT 59.859 57.895 7.01 0.00 0.00 3.36
7768 8943 0.382158 CGACGAGCTGCTGATTCCTA 59.618 55.000 7.01 0.00 0.00 2.94
7769 8944 1.000827 CGACGAGCTGCTGATTCCTAT 60.001 52.381 7.01 0.00 0.00 2.57
7770 8945 2.402305 GACGAGCTGCTGATTCCTATG 58.598 52.381 7.01 0.00 0.00 2.23
7771 8946 1.069823 ACGAGCTGCTGATTCCTATGG 59.930 52.381 7.01 0.00 0.00 2.74
7772 8947 1.521580 GAGCTGCTGATTCCTATGGC 58.478 55.000 7.01 0.00 0.00 4.40
7775 8950 0.107456 CTGCTGATTCCTATGGCCGT 59.893 55.000 1.35 1.35 0.00 5.68
7799 8974 0.537653 CGTCCCTCTTTCTTCCTCCC 59.462 60.000 0.00 0.00 0.00 4.30
7829 9004 4.729918 AAAGGGGAGGCAGCGCAG 62.730 66.667 11.47 1.31 0.00 5.18
7850 9025 0.183971 TTCGGTTTGGTGTCCATGGT 59.816 50.000 12.58 0.00 31.53 3.55
7853 9028 0.958822 GGTTTGGTGTCCATGGTGTC 59.041 55.000 12.58 4.59 31.53 3.67
7854 9029 0.958822 GTTTGGTGTCCATGGTGTCC 59.041 55.000 12.58 12.51 31.53 4.02
7872 9047 4.803426 GCTGTGGAGGGCTCGACG 62.803 72.222 0.00 0.00 40.55 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.498176 GGTTGTGCCCCTACCTTCCT 61.498 60.000 0.00 0.00 36.20 3.36
42 43 4.095036 GCCCTTTAACTCAATCTCCTTTCG 59.905 45.833 0.00 0.00 0.00 3.46
46 47 3.330701 TGTGCCCTTTAACTCAATCTCCT 59.669 43.478 0.00 0.00 0.00 3.69
50 51 5.163513 CAACATGTGCCCTTTAACTCAATC 58.836 41.667 0.00 0.00 0.00 2.67
75 76 2.398588 TGCCTAGCTAGTACTGCCATT 58.601 47.619 19.31 0.00 0.00 3.16
79 80 1.134560 ACGTTGCCTAGCTAGTACTGC 59.865 52.381 19.31 15.06 0.00 4.40
104 106 4.051922 CCTCTCATGTCCTTGTTATACGC 58.948 47.826 0.00 0.00 0.00 4.42
139 141 4.570772 CGAGTTTCGATGGATGTATGGTTT 59.429 41.667 0.00 0.00 43.74 3.27
144 146 6.382608 CATCTACGAGTTTCGATGGATGTAT 58.617 40.000 5.38 0.00 43.74 2.29
145 147 5.758924 CATCTACGAGTTTCGATGGATGTA 58.241 41.667 5.38 0.00 43.74 2.29
153 155 2.349590 TCGTCCATCTACGAGTTTCGA 58.650 47.619 5.38 0.00 46.29 3.71
189 191 1.116536 TGCCGTTGAGTCTACCCACA 61.117 55.000 0.00 0.00 0.00 4.17
206 208 2.109181 GTAGCCCCTCGATGGTGC 59.891 66.667 5.97 8.71 0.00 5.01
245 247 6.024552 AGAAAATCGCCAAATGTGTACAAT 57.975 33.333 0.00 0.00 0.00 2.71
347 374 0.813210 CCTCTCCATTCTCGCCAAGC 60.813 60.000 0.00 0.00 0.00 4.01
355 382 0.327000 CCCCACCTCCTCTCCATTCT 60.327 60.000 0.00 0.00 0.00 2.40
393 424 4.381612 CCCGTTATATCCATATGTCACGCT 60.382 45.833 1.24 0.00 0.00 5.07
434 468 7.833285 ATAAAGAAAACCAAGGCTTGTTAGA 57.167 32.000 24.57 5.08 0.00 2.10
553 591 5.705609 TGTTGCAGCGTATGAGATAGATA 57.294 39.130 0.00 0.00 0.00 1.98
587 629 5.502869 CGACGTTTGTAAGTTATTATGCCCC 60.503 44.000 0.00 0.00 0.00 5.80
596 638 4.930963 TCCTTGACGACGTTTGTAAGTTA 58.069 39.130 0.13 0.00 0.00 2.24
597 639 3.784338 TCCTTGACGACGTTTGTAAGTT 58.216 40.909 0.13 0.00 0.00 2.66
598 640 3.441496 TCCTTGACGACGTTTGTAAGT 57.559 42.857 0.13 0.00 0.00 2.24
599 641 4.269363 AGTTTCCTTGACGACGTTTGTAAG 59.731 41.667 0.13 5.25 0.00 2.34
601 643 3.784338 AGTTTCCTTGACGACGTTTGTA 58.216 40.909 0.13 0.00 0.00 2.41
602 644 2.624636 AGTTTCCTTGACGACGTTTGT 58.375 42.857 0.13 0.00 0.00 2.83
603 645 3.668596 AAGTTTCCTTGACGACGTTTG 57.331 42.857 0.13 0.00 0.00 2.93
616 658 1.461897 GCATGTTGCATGCAAGTTTCC 59.538 47.619 32.64 20.46 44.26 3.13
640 682 5.660629 TGCAAGTTCAGCAATTTTTCATG 57.339 34.783 0.00 0.00 39.39 3.07
665 707 0.178961 AACTCAGGGGGTTTTCTGCC 60.179 55.000 0.00 0.00 0.00 4.85
725 767 7.492344 TCTTTTTGTGGAATTTCTTCTCAAAGC 59.508 33.333 0.00 0.00 36.98 3.51
840 883 0.950836 TTGTGTTGCCACGAATCCAG 59.049 50.000 0.00 0.00 44.92 3.86
885 928 0.530744 AGCAGCGTCCGTGAAGAATA 59.469 50.000 0.00 0.00 0.00 1.75
907 950 1.819632 GGATGACATGTGGGACCGC 60.820 63.158 1.15 0.00 0.00 5.68
908 951 0.179073 GAGGATGACATGTGGGACCG 60.179 60.000 1.15 0.00 0.00 4.79
991 1035 2.360801 GGAAGAAGACGATGGAGAGGAG 59.639 54.545 0.00 0.00 0.00 3.69
1232 1276 3.120408 GCCAATTCGATCAATCTCGATGG 60.120 47.826 10.32 10.32 46.16 3.51
1637 1681 3.241530 AGTGCCTGTGAGCCCGAA 61.242 61.111 0.00 0.00 0.00 4.30
1760 1804 2.763448 ACCCTCAAGTAGATGCTCAGTC 59.237 50.000 0.00 0.00 0.00 3.51
1874 1918 1.285962 ACATTGGAGTCATCCTTGGGG 59.714 52.381 0.00 0.00 46.80 4.96
2056 2100 6.006449 CCCATTCTCCTCAACCCATTATTAG 58.994 44.000 0.00 0.00 0.00 1.73
2368 2412 7.450074 TCCAATACATCTACGCCATTATCTTT 58.550 34.615 0.00 0.00 0.00 2.52
2388 2432 4.081309 CCATTCAGTTGCAAGGAATCCAAT 60.081 41.667 18.58 1.99 0.00 3.16
2560 2604 2.223112 GCACCATTCAATGTGCGTAGAG 60.223 50.000 8.55 0.00 33.04 2.43
3061 3269 6.169094 AGCCATATCATAAGTTTCTGGATCG 58.831 40.000 0.00 0.00 0.00 3.69
3209 3417 9.238368 TGAGTTAATGAATTAAAAGTGTAGGGG 57.762 33.333 0.00 0.00 34.36 4.79
3295 3503 4.783764 ATTGTAAACCTAGCAAAGTGGC 57.216 40.909 0.00 0.00 0.00 5.01
3395 3603 2.188062 TGCCGGTTTACCCTTGTAAG 57.812 50.000 1.90 0.00 38.17 2.34
3651 3860 2.099098 AGCAACAAGTTTTGACGGGAAG 59.901 45.455 0.00 0.00 0.00 3.46
3819 4033 2.709934 AGATACATTCCTGCAGGCAGAT 59.290 45.455 28.91 17.79 46.30 2.90
4213 5198 4.628963 ACGTAAATGGGTACAAAGTCCT 57.371 40.909 0.00 0.00 0.00 3.85
4221 5206 9.933723 ATATTAATGACCTACGTAAATGGGTAC 57.066 33.333 4.36 0.85 32.72 3.34
4232 5217 6.817765 AAATGCCCATATTAATGACCTACG 57.182 37.500 0.00 0.00 34.84 3.51
4247 5232 6.881602 GGGTGAACATTTTTATAAAATGCCCA 59.118 34.615 21.06 16.72 40.35 5.36
4411 5396 3.054802 ACTGAGAAAAATGATCCCGCTCT 60.055 43.478 0.00 0.00 0.00 4.09
4687 5672 4.640789 AATAAGTCTCTGCAGGAGTACG 57.359 45.455 15.13 0.00 42.40 3.67
5016 6027 1.537202 CCAACTTTTTGGCGAGAGGAG 59.463 52.381 0.00 0.00 46.09 3.69
5017 6028 1.604604 CCAACTTTTTGGCGAGAGGA 58.395 50.000 0.00 0.00 46.09 3.71
5165 6176 0.098728 ACATGCGCTATTCAAACGGC 59.901 50.000 9.73 0.00 0.00 5.68
5184 6195 3.568007 AGCTGCATGAACGGAACTAAAAA 59.432 39.130 1.02 0.00 0.00 1.94
5185 6196 3.058293 CAGCTGCATGAACGGAACTAAAA 60.058 43.478 0.00 0.00 0.00 1.52
5226 6237 4.970860 ATGAGCTGCTATTAGACATGGT 57.029 40.909 0.15 0.00 0.00 3.55
5327 6338 7.591426 GCCAACTAAGTTCACAAATACTTTGAG 59.409 37.037 6.61 0.00 43.26 3.02
5446 6458 3.338249 CTCCTGACTATGGGTGTGTTTG 58.662 50.000 0.00 0.00 0.00 2.93
5465 6477 5.314923 TGTATTTGATTTGAAGGCAGCTC 57.685 39.130 0.00 0.00 0.00 4.09
5539 6551 8.339714 CCAATCAACATAAAATCCATTGCAATC 58.660 33.333 9.53 0.00 0.00 2.67
6150 7170 2.813061 CCCACGCCATTTGATGATTTC 58.187 47.619 0.00 0.00 0.00 2.17
6381 7401 7.685481 TGGAACACTATAGATTTCCTCAAACA 58.315 34.615 24.93 10.91 38.70 2.83
6463 7483 1.399744 TATCCGCTGCCGAACCAGAT 61.400 55.000 0.00 0.00 34.77 2.90
6475 7495 0.106469 TCTCACTGCCTCTATCCGCT 60.106 55.000 0.00 0.00 0.00 5.52
6562 7588 2.754552 GGCTTCCATCACTTGCATGTAA 59.245 45.455 4.73 0.00 0.00 2.41
6756 7785 8.916654 CAGAGGCTATCGTTATTTTGTATGTAG 58.083 37.037 0.00 0.00 0.00 2.74
6757 7786 8.418662 ACAGAGGCTATCGTTATTTTGTATGTA 58.581 33.333 0.00 0.00 0.00 2.29
6758 7787 7.224753 CACAGAGGCTATCGTTATTTTGTATGT 59.775 37.037 0.00 0.00 0.00 2.29
6759 7788 7.438160 TCACAGAGGCTATCGTTATTTTGTATG 59.562 37.037 0.00 0.00 0.00 2.39
6760 7789 7.497595 TCACAGAGGCTATCGTTATTTTGTAT 58.502 34.615 0.00 0.00 0.00 2.29
6861 7892 6.590292 TCAAACACCAGATCGAATAGAAAGTC 59.410 38.462 0.00 0.00 0.00 3.01
6862 7893 6.464222 TCAAACACCAGATCGAATAGAAAGT 58.536 36.000 0.00 0.00 0.00 2.66
6960 8012 8.539770 ACAAAACTAGACAGACATAATCACAG 57.460 34.615 0.00 0.00 0.00 3.66
6972 8046 5.007626 TGCACAGCTTAACAAAACTAGACAG 59.992 40.000 0.00 0.00 0.00 3.51
7036 8113 0.815734 GCATGCCTCATTCTGCAAGT 59.184 50.000 6.36 0.00 41.50 3.16
7040 8117 1.475280 TCAAAGCATGCCTCATTCTGC 59.525 47.619 15.66 0.00 34.85 4.26
7067 8146 5.873732 ACGATTCTTCATTTTAAGCTGCTC 58.126 37.500 1.00 0.00 0.00 4.26
7084 8163 4.965119 ATCTAGTTGCCCAAAACGATTC 57.035 40.909 0.00 0.00 35.13 2.52
7085 8164 5.242838 TGAAATCTAGTTGCCCAAAACGATT 59.757 36.000 0.00 0.00 35.13 3.34
7100 8180 9.722184 ATAATCTCATGACCATGTGAAATCTAG 57.278 33.333 15.74 2.89 42.35 2.43
7114 8194 8.429641 TGTTTTCCTACCCTATAATCTCATGAC 58.570 37.037 0.00 0.00 0.00 3.06
7116 8196 7.385205 CGTGTTTTCCTACCCTATAATCTCATG 59.615 40.741 0.00 0.00 0.00 3.07
7117 8197 7.070821 ACGTGTTTTCCTACCCTATAATCTCAT 59.929 37.037 0.00 0.00 0.00 2.90
7125 8205 4.529377 TCTGAACGTGTTTTCCTACCCTAT 59.471 41.667 0.00 0.00 0.00 2.57
7142 8222 6.706270 TCCTACAAACTTCTGTGATTCTGAAC 59.294 38.462 0.00 0.00 32.19 3.18
7157 8237 1.975680 ACACGGTCCATCCTACAAACT 59.024 47.619 0.00 0.00 0.00 2.66
7166 8246 0.179108 GCTCTACCACACGGTCCATC 60.179 60.000 0.00 0.00 44.71 3.51
7173 8253 0.992072 CGTCATTGCTCTACCACACG 59.008 55.000 0.00 0.00 0.00 4.49
7180 8260 4.625972 TCGAATACACGTCATTGCTCTA 57.374 40.909 0.00 0.00 34.70 2.43
7181 8261 3.503827 TCGAATACACGTCATTGCTCT 57.496 42.857 0.00 0.00 34.70 4.09
7182 8262 4.778842 ATTCGAATACACGTCATTGCTC 57.221 40.909 9.39 0.00 34.70 4.26
7184 8264 5.675444 GGTTTATTCGAATACACGTCATTGC 59.325 40.000 21.92 8.06 34.70 3.56
7185 8265 6.767080 TGGTTTATTCGAATACACGTCATTG 58.233 36.000 21.92 0.00 34.70 2.82
7186 8266 6.036735 CCTGGTTTATTCGAATACACGTCATT 59.963 38.462 21.92 0.00 34.70 2.57
7187 8267 5.522460 CCTGGTTTATTCGAATACACGTCAT 59.478 40.000 21.92 0.00 34.70 3.06
7188 8268 4.865925 CCTGGTTTATTCGAATACACGTCA 59.134 41.667 21.92 16.08 34.70 4.35
7189 8269 4.269363 CCCTGGTTTATTCGAATACACGTC 59.731 45.833 21.92 13.21 34.70 4.34
7190 8270 4.186159 CCCTGGTTTATTCGAATACACGT 58.814 43.478 21.92 0.73 34.70 4.49
7191 8271 3.001939 GCCCTGGTTTATTCGAATACACG 59.998 47.826 21.92 12.75 0.00 4.49
7192 8272 3.314357 GGCCCTGGTTTATTCGAATACAC 59.686 47.826 21.08 21.08 0.00 2.90
7193 8273 3.547746 GGCCCTGGTTTATTCGAATACA 58.452 45.455 17.33 8.65 0.00 2.29
7212 8292 4.640647 AGAACTAATTTGGAAAGGATCGGC 59.359 41.667 0.00 0.00 0.00 5.54
7221 8301 5.075900 AGAAAGGGGGAGAACTAATTTGGAA 59.924 40.000 0.00 0.00 0.00 3.53
7222 8302 4.606255 AGAAAGGGGGAGAACTAATTTGGA 59.394 41.667 0.00 0.00 0.00 3.53
7243 8323 1.210967 GAGAGGAGAAGGGTCGAGAGA 59.789 57.143 0.00 0.00 38.16 3.10
7266 8346 0.814457 CACGGGAGACTCTCAAGGAG 59.186 60.000 8.35 0.00 46.87 3.69
7318 8398 4.641645 CCACTCCGGCCAGCAACA 62.642 66.667 2.24 0.00 0.00 3.33
7323 8403 0.757188 ACTATCTCCACTCCGGCCAG 60.757 60.000 2.24 0.00 33.14 4.85
7327 8407 4.519730 CCTAAACTACTATCTCCACTCCGG 59.480 50.000 0.00 0.00 0.00 5.14
7340 8420 6.683312 AAGTGGAGCTAAACCTAAACTACT 57.317 37.500 0.00 0.00 0.00 2.57
7341 8421 6.148976 CCAAAGTGGAGCTAAACCTAAACTAC 59.851 42.308 0.00 0.00 40.96 2.73
7342 8422 6.183361 ACCAAAGTGGAGCTAAACCTAAACTA 60.183 38.462 0.18 0.00 40.96 2.24
7343 8423 5.070685 CCAAAGTGGAGCTAAACCTAAACT 58.929 41.667 0.00 0.00 40.96 2.66
7359 8485 0.179086 GGCCAAACACCACCAAAGTG 60.179 55.000 0.00 0.00 44.12 3.16
7380 8507 1.879380 GCATGACACCAAACTAGCACA 59.121 47.619 0.00 0.00 0.00 4.57
7393 8520 1.960040 CTCACCCTAGCGGCATGACA 61.960 60.000 0.00 0.00 33.26 3.58
7403 8530 1.657556 GCTCGCTAGCTCACCCTAG 59.342 63.158 13.93 0.00 45.85 3.02
7413 8540 1.068753 CCACCATGGAGCTCGCTAG 59.931 63.158 21.47 0.00 40.96 3.42
7414 8541 1.381191 TCCACCATGGAGCTCGCTA 60.381 57.895 21.47 0.00 42.67 4.26
7415 8542 2.685017 TCCACCATGGAGCTCGCT 60.685 61.111 21.47 0.00 42.67 4.93
7471 8646 1.132500 AGGGCCTTAGCGAGCTTATT 58.868 50.000 0.00 0.00 41.24 1.40
7479 8654 0.676736 CTCTCCTAAGGGCCTTAGCG 59.323 60.000 37.28 30.31 41.27 4.26
7490 8665 1.676529 CCTTCGCATCGTCTCTCCTAA 59.323 52.381 0.00 0.00 0.00 2.69
7491 8666 1.309950 CCTTCGCATCGTCTCTCCTA 58.690 55.000 0.00 0.00 0.00 2.94
7495 8670 2.496817 GCCCTTCGCATCGTCTCT 59.503 61.111 0.00 0.00 37.47 3.10
7505 8680 2.033602 AAAACGGGAGGCCCTTCG 59.966 61.111 0.00 2.95 42.67 3.79
7506 8681 0.677098 GAGAAAACGGGAGGCCCTTC 60.677 60.000 0.00 0.00 42.67 3.46
7507 8682 1.379146 GAGAAAACGGGAGGCCCTT 59.621 57.895 0.00 0.00 42.67 3.95
7508 8683 2.603652 GGAGAAAACGGGAGGCCCT 61.604 63.158 0.00 0.00 42.67 5.19
7509 8684 2.045242 GGAGAAAACGGGAGGCCC 60.045 66.667 0.00 0.00 41.09 5.80
7510 8685 1.032114 CATGGAGAAAACGGGAGGCC 61.032 60.000 0.00 0.00 0.00 5.19
7511 8686 1.657751 GCATGGAGAAAACGGGAGGC 61.658 60.000 0.00 0.00 0.00 4.70
7512 8687 1.032114 GGCATGGAGAAAACGGGAGG 61.032 60.000 0.00 0.00 0.00 4.30
7513 8688 1.369091 CGGCATGGAGAAAACGGGAG 61.369 60.000 0.00 0.00 0.00 4.30
7514 8689 1.376683 CGGCATGGAGAAAACGGGA 60.377 57.895 0.00 0.00 0.00 5.14
7515 8690 1.241315 AACGGCATGGAGAAAACGGG 61.241 55.000 0.00 0.00 0.00 5.28
7516 8691 0.109781 CAACGGCATGGAGAAAACGG 60.110 55.000 0.00 0.00 0.00 4.44
7517 8692 0.871722 TCAACGGCATGGAGAAAACG 59.128 50.000 0.00 0.00 0.00 3.60
7518 8693 1.200020 CCTCAACGGCATGGAGAAAAC 59.800 52.381 0.00 0.00 0.00 2.43
7519 8694 1.202879 ACCTCAACGGCATGGAGAAAA 60.203 47.619 0.00 0.00 35.61 2.29
7520 8695 0.400213 ACCTCAACGGCATGGAGAAA 59.600 50.000 0.00 0.00 35.61 2.52
7521 8696 0.321564 CACCTCAACGGCATGGAGAA 60.322 55.000 0.00 0.00 35.61 2.87
7522 8697 1.296392 CACCTCAACGGCATGGAGA 59.704 57.895 0.00 0.00 35.61 3.71
7523 8698 1.746615 CCACCTCAACGGCATGGAG 60.747 63.158 0.00 0.00 31.96 3.86
7524 8699 2.350895 CCACCTCAACGGCATGGA 59.649 61.111 0.00 0.00 31.96 3.41
7531 8706 3.851845 TTCGTCCGCCACCTCAACG 62.852 63.158 0.00 0.00 34.80 4.10
7532 8707 2.027625 CTTCGTCCGCCACCTCAAC 61.028 63.158 0.00 0.00 0.00 3.18
7533 8708 1.750341 TTCTTCGTCCGCCACCTCAA 61.750 55.000 0.00 0.00 0.00 3.02
7534 8709 2.154798 CTTCTTCGTCCGCCACCTCA 62.155 60.000 0.00 0.00 0.00 3.86
7535 8710 1.446272 CTTCTTCGTCCGCCACCTC 60.446 63.158 0.00 0.00 0.00 3.85
7536 8711 2.657237 CTTCTTCGTCCGCCACCT 59.343 61.111 0.00 0.00 0.00 4.00
7537 8712 3.119096 GCTTCTTCGTCCGCCACC 61.119 66.667 0.00 0.00 0.00 4.61
7538 8713 2.357034 TGCTTCTTCGTCCGCCAC 60.357 61.111 0.00 0.00 0.00 5.01
7539 8714 2.048222 CTGCTTCTTCGTCCGCCA 60.048 61.111 0.00 0.00 0.00 5.69
7540 8715 2.048127 ACTGCTTCTTCGTCCGCC 60.048 61.111 0.00 0.00 0.00 6.13
7541 8716 2.383527 CCACTGCTTCTTCGTCCGC 61.384 63.158 0.00 0.00 0.00 5.54
7542 8717 1.738099 CCCACTGCTTCTTCGTCCG 60.738 63.158 0.00 0.00 0.00 4.79
7543 8718 1.376037 CCCCACTGCTTCTTCGTCC 60.376 63.158 0.00 0.00 0.00 4.79
7544 8719 0.250513 ATCCCCACTGCTTCTTCGTC 59.749 55.000 0.00 0.00 0.00 4.20
7545 8720 0.250513 GATCCCCACTGCTTCTTCGT 59.749 55.000 0.00 0.00 0.00 3.85
7546 8721 0.462759 GGATCCCCACTGCTTCTTCG 60.463 60.000 0.00 0.00 0.00 3.79
7547 8722 0.915364 AGGATCCCCACTGCTTCTTC 59.085 55.000 8.55 0.00 33.88 2.87
7548 8723 1.005215 CAAGGATCCCCACTGCTTCTT 59.995 52.381 8.55 0.00 33.88 2.52
7549 8724 0.622665 CAAGGATCCCCACTGCTTCT 59.377 55.000 8.55 0.00 33.88 2.85
7550 8725 0.329596 ACAAGGATCCCCACTGCTTC 59.670 55.000 8.55 0.00 33.88 3.86
7551 8726 0.779997 AACAAGGATCCCCACTGCTT 59.220 50.000 8.55 0.00 33.88 3.91
7552 8727 0.779997 AAACAAGGATCCCCACTGCT 59.220 50.000 8.55 0.00 33.88 4.24
7553 8728 1.177401 GAAACAAGGATCCCCACTGC 58.823 55.000 8.55 0.00 33.88 4.40
7554 8729 1.271379 ACGAAACAAGGATCCCCACTG 60.271 52.381 8.55 3.64 33.88 3.66
7555 8730 1.064825 ACGAAACAAGGATCCCCACT 58.935 50.000 8.55 0.00 33.88 4.00
7556 8731 1.905637 AACGAAACAAGGATCCCCAC 58.094 50.000 8.55 0.00 33.88 4.61
7557 8732 2.235016 CAAACGAAACAAGGATCCCCA 58.765 47.619 8.55 0.00 33.88 4.96
7558 8733 2.228103 GACAAACGAAACAAGGATCCCC 59.772 50.000 8.55 0.00 0.00 4.81
7559 8734 3.146847 AGACAAACGAAACAAGGATCCC 58.853 45.455 8.55 0.00 0.00 3.85
7560 8735 3.120649 CGAGACAAACGAAACAAGGATCC 60.121 47.826 2.48 2.48 0.00 3.36
7561 8736 3.493503 ACGAGACAAACGAAACAAGGATC 59.506 43.478 0.00 0.00 34.70 3.36
7562 8737 3.247648 CACGAGACAAACGAAACAAGGAT 59.752 43.478 0.00 0.00 34.70 3.24
7563 8738 2.605818 CACGAGACAAACGAAACAAGGA 59.394 45.455 0.00 0.00 34.70 3.36
7564 8739 2.286184 CCACGAGACAAACGAAACAAGG 60.286 50.000 0.00 0.00 34.70 3.61
7565 8740 2.849502 GCCACGAGACAAACGAAACAAG 60.850 50.000 0.00 0.00 34.70 3.16
7566 8741 1.062880 GCCACGAGACAAACGAAACAA 59.937 47.619 0.00 0.00 34.70 2.83
7567 8742 0.653636 GCCACGAGACAAACGAAACA 59.346 50.000 0.00 0.00 34.70 2.83
7568 8743 0.382636 CGCCACGAGACAAACGAAAC 60.383 55.000 0.00 0.00 34.70 2.78
7569 8744 1.492319 CCGCCACGAGACAAACGAAA 61.492 55.000 0.00 0.00 34.70 3.46
7570 8745 1.952133 CCGCCACGAGACAAACGAA 60.952 57.895 0.00 0.00 34.70 3.85
7571 8746 2.355363 CCGCCACGAGACAAACGA 60.355 61.111 0.00 0.00 34.70 3.85
7572 8747 3.411351 CCCGCCACGAGACAAACG 61.411 66.667 0.00 0.00 0.00 3.60
7573 8748 1.441732 AAACCCGCCACGAGACAAAC 61.442 55.000 0.00 0.00 0.00 2.93
7574 8749 1.153127 AAACCCGCCACGAGACAAA 60.153 52.632 0.00 0.00 0.00 2.83
7575 8750 1.890041 CAAACCCGCCACGAGACAA 60.890 57.895 0.00 0.00 0.00 3.18
7576 8751 2.280524 CAAACCCGCCACGAGACA 60.281 61.111 0.00 0.00 0.00 3.41
7577 8752 3.723348 GCAAACCCGCCACGAGAC 61.723 66.667 0.00 0.00 0.00 3.36
7585 8760 3.423154 CTGACGAGGCAAACCCGC 61.423 66.667 0.00 0.00 39.21 6.13
7586 8761 1.079127 ATCTGACGAGGCAAACCCG 60.079 57.895 0.00 0.00 39.21 5.28
7587 8762 0.744771 GGATCTGACGAGGCAAACCC 60.745 60.000 0.00 0.00 36.11 4.11
7588 8763 0.744771 GGGATCTGACGAGGCAAACC 60.745 60.000 0.00 0.00 0.00 3.27
7589 8764 0.036388 TGGGATCTGACGAGGCAAAC 60.036 55.000 0.00 0.00 0.00 2.93
7590 8765 0.250234 CTGGGATCTGACGAGGCAAA 59.750 55.000 0.00 0.00 0.00 3.68
7591 8766 1.900351 CTGGGATCTGACGAGGCAA 59.100 57.895 0.00 0.00 0.00 4.52
7592 8767 2.725312 GCTGGGATCTGACGAGGCA 61.725 63.158 0.00 0.00 0.00 4.75
7593 8768 1.965754 AAGCTGGGATCTGACGAGGC 61.966 60.000 0.00 0.00 0.00 4.70
7594 8769 0.103937 GAAGCTGGGATCTGACGAGG 59.896 60.000 0.00 0.00 0.00 4.63
7595 8770 0.103937 GGAAGCTGGGATCTGACGAG 59.896 60.000 0.00 0.00 0.00 4.18
7596 8771 1.667154 CGGAAGCTGGGATCTGACGA 61.667 60.000 0.00 0.00 0.00 4.20
7597 8772 1.227089 CGGAAGCTGGGATCTGACG 60.227 63.158 0.00 0.00 0.00 4.35
7598 8773 0.179097 GTCGGAAGCTGGGATCTGAC 60.179 60.000 8.89 8.89 42.76 3.51
7599 8774 1.667154 CGTCGGAAGCTGGGATCTGA 61.667 60.000 0.00 0.00 0.00 3.27
7600 8775 1.227089 CGTCGGAAGCTGGGATCTG 60.227 63.158 0.00 0.00 0.00 2.90
7601 8776 1.379977 TCGTCGGAAGCTGGGATCT 60.380 57.895 0.00 0.00 0.00 2.75
7602 8777 1.066587 CTCGTCGGAAGCTGGGATC 59.933 63.158 0.00 0.00 0.00 3.36
7603 8778 2.427245 CCTCGTCGGAAGCTGGGAT 61.427 63.158 0.00 0.00 33.16 3.85
7604 8779 3.068691 CCTCGTCGGAAGCTGGGA 61.069 66.667 0.00 0.00 33.16 4.37
7605 8780 2.943978 AACCTCGTCGGAAGCTGGG 61.944 63.158 0.00 3.14 36.31 4.45
7606 8781 1.738099 CAACCTCGTCGGAAGCTGG 60.738 63.158 0.00 2.55 36.31 4.85
7607 8782 1.738099 CCAACCTCGTCGGAAGCTG 60.738 63.158 0.00 0.00 36.31 4.24
7608 8783 2.657237 CCAACCTCGTCGGAAGCT 59.343 61.111 0.00 0.00 36.31 3.74
7609 8784 3.119096 GCCAACCTCGTCGGAAGC 61.119 66.667 0.00 0.00 36.31 3.86
7610 8785 2.809601 CGCCAACCTCGTCGGAAG 60.810 66.667 0.00 0.00 36.31 3.46
7611 8786 3.562779 GACGCCAACCTCGTCGGAA 62.563 63.158 0.00 0.00 45.19 4.30
7612 8787 4.047059 GACGCCAACCTCGTCGGA 62.047 66.667 0.00 0.00 45.19 4.55
7616 8791 2.181021 GATCGACGCCAACCTCGT 59.819 61.111 0.00 0.00 43.49 4.18
7617 8792 2.582498 GGATCGACGCCAACCTCG 60.582 66.667 1.43 0.00 0.00 4.63
7618 8793 2.202892 GGGATCGACGCCAACCTC 60.203 66.667 8.28 0.00 0.00 3.85
7619 8794 2.683933 AGGGATCGACGCCAACCT 60.684 61.111 8.28 0.00 0.00 3.50
7620 8795 2.511600 CAGGGATCGACGCCAACC 60.512 66.667 8.28 0.00 0.00 3.77
7621 8796 1.810030 GTCAGGGATCGACGCCAAC 60.810 63.158 8.28 0.57 0.00 3.77
7622 8797 1.541310 AAGTCAGGGATCGACGCCAA 61.541 55.000 8.28 0.00 38.46 4.52
7623 8798 1.982395 AAGTCAGGGATCGACGCCA 60.982 57.895 8.28 0.00 38.46 5.69
7624 8799 1.519455 CAAGTCAGGGATCGACGCC 60.519 63.158 0.00 0.00 38.46 5.68
7625 8800 1.078759 CACAAGTCAGGGATCGACGC 61.079 60.000 0.00 0.00 38.46 5.19
7626 8801 0.458543 CCACAAGTCAGGGATCGACG 60.459 60.000 0.00 0.00 38.46 5.12
7627 8802 3.442996 CCACAAGTCAGGGATCGAC 57.557 57.895 0.00 0.00 0.00 4.20
7633 8808 0.036875 GAACCTCCCACAAGTCAGGG 59.963 60.000 0.00 0.00 46.90 4.45
7634 8809 1.059913 AGAACCTCCCACAAGTCAGG 58.940 55.000 0.00 0.00 0.00 3.86
7635 8810 2.880890 CAAAGAACCTCCCACAAGTCAG 59.119 50.000 0.00 0.00 0.00 3.51
7636 8811 2.422803 CCAAAGAACCTCCCACAAGTCA 60.423 50.000 0.00 0.00 0.00 3.41
7637 8812 2.230660 CCAAAGAACCTCCCACAAGTC 58.769 52.381 0.00 0.00 0.00 3.01
7638 8813 1.754201 GCCAAAGAACCTCCCACAAGT 60.754 52.381 0.00 0.00 0.00 3.16
7639 8814 0.961753 GCCAAAGAACCTCCCACAAG 59.038 55.000 0.00 0.00 0.00 3.16
7640 8815 0.555769 AGCCAAAGAACCTCCCACAA 59.444 50.000 0.00 0.00 0.00 3.33
7641 8816 0.110486 GAGCCAAAGAACCTCCCACA 59.890 55.000 0.00 0.00 0.00 4.17
7642 8817 0.955919 CGAGCCAAAGAACCTCCCAC 60.956 60.000 0.00 0.00 0.00 4.61
7643 8818 1.374947 CGAGCCAAAGAACCTCCCA 59.625 57.895 0.00 0.00 0.00 4.37
7644 8819 0.673956 GACGAGCCAAAGAACCTCCC 60.674 60.000 0.00 0.00 0.00 4.30
7645 8820 0.034896 TGACGAGCCAAAGAACCTCC 59.965 55.000 0.00 0.00 0.00 4.30
7646 8821 1.000955 TCTGACGAGCCAAAGAACCTC 59.999 52.381 0.00 0.00 0.00 3.85
7647 8822 1.001406 CTCTGACGAGCCAAAGAACCT 59.999 52.381 0.00 0.00 0.00 3.50
7648 8823 1.433534 CTCTGACGAGCCAAAGAACC 58.566 55.000 0.00 0.00 0.00 3.62
7660 8835 2.575525 CGCTCGACAGCTCTGACG 60.576 66.667 13.80 13.80 46.71 4.35
7661 8836 2.202544 CCGCTCGACAGCTCTGAC 60.203 66.667 3.60 0.00 44.40 3.51
7662 8837 4.121669 GCCGCTCGACAGCTCTGA 62.122 66.667 3.60 0.00 44.40 3.27
7671 8846 4.435436 AGCATGTTCGCCGCTCGA 62.435 61.111 0.00 0.00 46.88 4.04
7672 8847 4.214383 CAGCATGTTCGCCGCTCG 62.214 66.667 0.00 0.00 40.15 5.03
7683 8858 1.210931 CACGAAGCCCAACAGCATG 59.789 57.895 0.00 0.00 46.00 4.06
7684 8859 1.228245 ACACGAAGCCCAACAGCAT 60.228 52.632 0.00 0.00 34.23 3.79
7685 8860 2.186160 CACACGAAGCCCAACAGCA 61.186 57.895 0.00 0.00 34.23 4.41
7686 8861 0.882927 TACACACGAAGCCCAACAGC 60.883 55.000 0.00 0.00 0.00 4.40
7687 8862 1.732259 GATACACACGAAGCCCAACAG 59.268 52.381 0.00 0.00 0.00 3.16
7688 8863 1.070914 TGATACACACGAAGCCCAACA 59.929 47.619 0.00 0.00 0.00 3.33
7689 8864 1.803334 TGATACACACGAAGCCCAAC 58.197 50.000 0.00 0.00 0.00 3.77
7690 8865 2.027653 TGATGATACACACGAAGCCCAA 60.028 45.455 0.00 0.00 0.00 4.12
7691 8866 1.552792 TGATGATACACACGAAGCCCA 59.447 47.619 0.00 0.00 0.00 5.36
7692 8867 2.205074 CTGATGATACACACGAAGCCC 58.795 52.381 0.00 0.00 0.00 5.19
7693 8868 1.594862 GCTGATGATACACACGAAGCC 59.405 52.381 0.00 0.00 0.00 4.35
7694 8869 1.256376 CGCTGATGATACACACGAAGC 59.744 52.381 0.00 0.00 0.00 3.86
7695 8870 1.854743 CCGCTGATGATACACACGAAG 59.145 52.381 0.00 0.00 0.00 3.79
7696 8871 1.203758 ACCGCTGATGATACACACGAA 59.796 47.619 0.00 0.00 0.00 3.85
7697 8872 0.815095 ACCGCTGATGATACACACGA 59.185 50.000 0.00 0.00 0.00 4.35
7698 8873 0.923403 CACCGCTGATGATACACACG 59.077 55.000 0.00 0.00 0.00 4.49
7699 8874 1.290203 CCACCGCTGATGATACACAC 58.710 55.000 0.00 0.00 0.00 3.82
7700 8875 0.901827 ACCACCGCTGATGATACACA 59.098 50.000 0.00 0.00 0.00 3.72
7701 8876 2.024176 AACCACCGCTGATGATACAC 57.976 50.000 0.00 0.00 0.00 2.90
7702 8877 3.494223 CCATAACCACCGCTGATGATACA 60.494 47.826 0.00 0.00 0.00 2.29
7703 8878 3.067106 CCATAACCACCGCTGATGATAC 58.933 50.000 0.00 0.00 0.00 2.24
7704 8879 2.038426 CCCATAACCACCGCTGATGATA 59.962 50.000 0.00 0.00 0.00 2.15
7705 8880 1.202806 CCCATAACCACCGCTGATGAT 60.203 52.381 0.00 0.00 0.00 2.45
7706 8881 0.180171 CCCATAACCACCGCTGATGA 59.820 55.000 0.00 0.00 0.00 2.92
7707 8882 0.819259 CCCCATAACCACCGCTGATG 60.819 60.000 0.00 0.00 0.00 3.07
7708 8883 0.986019 TCCCCATAACCACCGCTGAT 60.986 55.000 0.00 0.00 0.00 2.90
7709 8884 1.613928 TCCCCATAACCACCGCTGA 60.614 57.895 0.00 0.00 0.00 4.26
7710 8885 1.153168 CTCCCCATAACCACCGCTG 60.153 63.158 0.00 0.00 0.00 5.18
7711 8886 2.375345 CCTCCCCATAACCACCGCT 61.375 63.158 0.00 0.00 0.00 5.52
7712 8887 2.192175 CCTCCCCATAACCACCGC 59.808 66.667 0.00 0.00 0.00 5.68
7713 8888 1.052124 TAGCCTCCCCATAACCACCG 61.052 60.000 0.00 0.00 0.00 4.94
7714 8889 1.143073 CTTAGCCTCCCCATAACCACC 59.857 57.143 0.00 0.00 0.00 4.61
7715 8890 1.143073 CCTTAGCCTCCCCATAACCAC 59.857 57.143 0.00 0.00 0.00 4.16
7716 8891 1.518367 CCTTAGCCTCCCCATAACCA 58.482 55.000 0.00 0.00 0.00 3.67
7717 8892 0.110678 GCCTTAGCCTCCCCATAACC 59.889 60.000 0.00 0.00 0.00 2.85
7718 8893 1.072489 GAGCCTTAGCCTCCCCATAAC 59.928 57.143 0.00 0.00 41.25 1.89
7719 8894 1.435256 GAGCCTTAGCCTCCCCATAA 58.565 55.000 0.00 0.00 41.25 1.90
7720 8895 0.473886 GGAGCCTTAGCCTCCCCATA 60.474 60.000 0.00 0.00 41.25 2.74
7721 8896 1.772156 GGAGCCTTAGCCTCCCCAT 60.772 63.158 0.00 0.00 41.25 4.00
7722 8897 2.366972 GGAGCCTTAGCCTCCCCA 60.367 66.667 0.00 0.00 41.25 4.96
7723 8898 2.366972 TGGAGCCTTAGCCTCCCC 60.367 66.667 6.80 0.00 41.25 4.81
7724 8899 1.690985 ACTGGAGCCTTAGCCTCCC 60.691 63.158 6.80 0.00 41.25 4.30
7725 8900 1.691195 GGACTGGAGCCTTAGCCTCC 61.691 65.000 1.82 1.82 41.25 4.30
7726 8901 0.689412 AGGACTGGAGCCTTAGCCTC 60.689 60.000 0.00 0.00 41.25 4.70
7727 8902 0.689412 GAGGACTGGAGCCTTAGCCT 60.689 60.000 0.00 0.00 41.25 4.58
7728 8903 1.826709 GAGGACTGGAGCCTTAGCC 59.173 63.158 0.00 0.00 41.25 3.93
7729 8904 1.439644 CGAGGACTGGAGCCTTAGC 59.560 63.158 0.00 0.00 35.44 3.09
7730 8905 1.439644 GCGAGGACTGGAGCCTTAG 59.560 63.158 0.00 0.00 35.44 2.18
7731 8906 2.058595 GGCGAGGACTGGAGCCTTA 61.059 63.158 0.00 0.00 45.67 2.69
7732 8907 3.394836 GGCGAGGACTGGAGCCTT 61.395 66.667 0.00 0.00 45.67 4.35
7735 8910 4.500116 GTCGGCGAGGACTGGAGC 62.500 72.222 11.20 0.00 34.09 4.70
7736 8911 4.180946 CGTCGGCGAGGACTGGAG 62.181 72.222 23.88 0.00 41.33 3.86
7737 8912 4.710167 TCGTCGGCGAGGACTGGA 62.710 66.667 26.32 6.02 42.81 3.86
7746 8921 4.862092 ATCAGCAGCTCGTCGGCG 62.862 66.667 1.15 1.15 40.93 6.46
7747 8922 2.510238 AATCAGCAGCTCGTCGGC 60.510 61.111 0.00 0.00 36.06 5.54
7748 8923 1.880340 GGAATCAGCAGCTCGTCGG 60.880 63.158 0.00 0.00 0.00 4.79
7749 8924 0.382158 TAGGAATCAGCAGCTCGTCG 59.618 55.000 0.00 0.00 0.00 5.12
7750 8925 2.402305 CATAGGAATCAGCAGCTCGTC 58.598 52.381 0.00 0.00 0.00 4.20
7751 8926 1.069823 CCATAGGAATCAGCAGCTCGT 59.930 52.381 0.00 0.00 0.00 4.18
7752 8927 1.793258 CCATAGGAATCAGCAGCTCG 58.207 55.000 0.00 0.00 0.00 5.03
7753 8928 1.521580 GCCATAGGAATCAGCAGCTC 58.478 55.000 0.00 0.00 0.00 4.09
7754 8929 0.110104 GGCCATAGGAATCAGCAGCT 59.890 55.000 0.00 0.00 0.00 4.24
7755 8930 1.233285 CGGCCATAGGAATCAGCAGC 61.233 60.000 2.24 0.00 0.00 5.25
7756 8931 0.107456 ACGGCCATAGGAATCAGCAG 59.893 55.000 2.24 0.00 0.00 4.24
7757 8932 1.344438 CTACGGCCATAGGAATCAGCA 59.656 52.381 2.24 0.00 0.00 4.41
7758 8933 1.338200 CCTACGGCCATAGGAATCAGC 60.338 57.143 20.65 0.00 44.12 4.26
7759 8934 1.276421 CCCTACGGCCATAGGAATCAG 59.724 57.143 26.61 5.03 44.12 2.90
7760 8935 1.348064 CCCTACGGCCATAGGAATCA 58.652 55.000 26.61 0.00 44.12 2.57
7782 8957 0.412244 TCGGGAGGAAGAAAGAGGGA 59.588 55.000 0.00 0.00 0.00 4.20
7786 8961 1.555075 CATGGTCGGGAGGAAGAAAGA 59.445 52.381 0.00 0.00 0.00 2.52
7829 9004 0.240945 CATGGACACCAAACCGAAGC 59.759 55.000 0.00 0.00 36.95 3.86
7854 9029 4.803426 GTCGAGCCCTCCACAGCG 62.803 72.222 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.