Multiple sequence alignment - TraesCS2A01G295700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G295700 chr2A 100.000 3210 0 0 1 3210 508513494 508516703 0.000000e+00 5928.0
1 TraesCS2A01G295700 chr2D 93.055 1699 65 24 736 2414 376131711 376133376 0.000000e+00 2435.0
2 TraesCS2A01G295700 chr2D 85.618 591 59 13 1 580 376130936 376131511 5.930000e-167 597.0
3 TraesCS2A01G295700 chr2D 93.678 174 9 2 2416 2588 376133420 376133592 3.180000e-65 259.0
4 TraesCS2A01G295700 chr2D 90.722 194 17 1 3018 3210 376133744 376133937 1.140000e-64 257.0
5 TraesCS2A01G295700 chr2D 94.375 160 5 1 2829 2984 376133587 376133746 3.200000e-60 243.0
6 TraesCS2A01G295700 chr2D 95.455 88 4 0 2609 2696 624365828 624365915 1.200000e-29 141.0
7 TraesCS2A01G295700 chr2D 88.889 63 6 1 634 696 300887366 300887427 3.430000e-10 76.8
8 TraesCS2A01G295700 chr2D 87.500 64 6 2 634 696 636644968 636645030 4.440000e-09 73.1
9 TraesCS2A01G295700 chr2B 92.348 1712 76 24 732 2414 447491480 447489795 0.000000e+00 2385.0
10 TraesCS2A01G295700 chr2B 93.103 377 24 2 2831 3205 447489584 447489208 4.680000e-153 551.0
11 TraesCS2A01G295700 chr2B 88.362 232 17 2 2609 2832 232780270 232780041 1.470000e-68 270.0
12 TraesCS2A01G295700 chr2B 93.333 165 9 2 2423 2586 447489749 447489586 3.200000e-60 243.0
13 TraesCS2A01G295700 chr2B 98.261 115 1 1 2704 2817 796482633 796482519 1.950000e-47 200.0
14 TraesCS2A01G295700 chr2B 96.552 87 3 0 2609 2695 608226780 608226866 9.280000e-31 145.0
15 TraesCS2A01G295700 chr2B 89.247 93 10 0 552 644 185812958 185812866 2.020000e-22 117.0
16 TraesCS2A01G295700 chr6A 88.696 230 14 8 2613 2832 594857528 594857755 1.470000e-68 270.0
17 TraesCS2A01G295700 chr6A 82.105 95 17 0 550 644 352665669 352665763 7.380000e-12 82.4
18 TraesCS2A01G295700 chr6A 88.889 63 7 0 582 644 153673690 153673628 9.550000e-11 78.7
19 TraesCS2A01G295700 chr6A 88.136 59 7 0 582 640 88080520 88080462 1.600000e-08 71.3
20 TraesCS2A01G295700 chr6A 100.000 28 0 0 432 459 553486253 553486226 6.000000e-03 52.8
21 TraesCS2A01G295700 chr7A 100.000 112 0 0 2704 2815 59200149 59200260 1.170000e-49 207.0
22 TraesCS2A01G295700 chr7B 100.000 111 0 0 2704 2814 141892764 141892654 4.200000e-49 206.0
23 TraesCS2A01G295700 chr7B 94.382 89 5 0 2608 2696 659420819 659420907 1.550000e-28 137.0
24 TraesCS2A01G295700 chr7B 82.474 97 17 0 546 642 705195517 705195613 5.710000e-13 86.1
25 TraesCS2A01G295700 chr7B 84.211 76 12 0 622 697 138161355 138161430 1.240000e-09 75.0
26 TraesCS2A01G295700 chr3B 100.000 110 0 0 2704 2813 17593502 17593611 1.510000e-48 204.0
27 TraesCS2A01G295700 chr3B 95.455 88 4 0 2609 2696 720268660 720268747 1.200000e-29 141.0
28 TraesCS2A01G295700 chr3B 87.692 65 7 1 634 697 556930645 556930709 1.240000e-09 75.0
29 TraesCS2A01G295700 chr3B 97.059 34 1 0 380 413 82822166 82822133 1.240000e-04 58.4
30 TraesCS2A01G295700 chr5A 97.436 117 3 0 2704 2820 9463898 9463782 1.950000e-47 200.0
31 TraesCS2A01G295700 chr5A 78.808 151 20 4 551 701 370244737 370244599 1.230000e-14 91.6
32 TraesCS2A01G295700 chr5A 90.323 62 6 0 583 644 571787643 571787582 7.380000e-12 82.4
33 TraesCS2A01G295700 chr4B 85.870 184 18 6 2656 2832 146469490 146469672 4.230000e-44 189.0
34 TraesCS2A01G295700 chr4B 81.000 100 11 5 551 644 33070052 33069955 4.440000e-09 73.1
35 TraesCS2A01G295700 chr4B 100.000 33 0 0 380 412 173913235 173913203 9.620000e-06 62.1
36 TraesCS2A01G295700 chr4B 92.857 42 1 2 427 468 631150746 631150707 3.460000e-05 60.2
37 TraesCS2A01G295700 chr5B 93.023 129 8 1 2704 2832 318403784 318403657 1.520000e-43 187.0
38 TraesCS2A01G295700 chr5B 83.000 100 16 1 546 644 537532909 537533008 4.410000e-14 89.8
39 TraesCS2A01G295700 chr5B 92.857 42 1 2 427 468 432075120 432075081 3.460000e-05 60.2
40 TraesCS2A01G295700 chrUn 77.936 281 41 7 138 409 91525681 91525949 4.290000e-34 156.0
41 TraesCS2A01G295700 chrUn 94.318 88 5 0 2609 2696 96474039 96474126 5.590000e-28 135.0
42 TraesCS2A01G295700 chrUn 87.013 77 10 0 568 644 24221165 24221089 1.590000e-13 87.9
43 TraesCS2A01G295700 chrUn 92.453 53 4 0 634 686 23772109 23772057 3.430000e-10 76.8
44 TraesCS2A01G295700 chrUn 90.909 55 5 0 639 693 320129137 320129191 1.240000e-09 75.0
45 TraesCS2A01G295700 chr1D 95.455 88 4 0 2609 2696 332997230 332997317 1.200000e-29 141.0
46 TraesCS2A01G295700 chr1D 95.455 88 4 0 2609 2696 423040631 423040718 1.200000e-29 141.0
47 TraesCS2A01G295700 chr3A 95.349 86 4 0 2611 2696 712325215 712325300 1.550000e-28 137.0
48 TraesCS2A01G295700 chr3A 84.043 94 15 0 551 644 420739370 420739463 1.230000e-14 91.6
49 TraesCS2A01G295700 chr4A 87.097 93 12 0 552 644 477033331 477033239 4.380000e-19 106.0
50 TraesCS2A01G295700 chr4A 91.176 68 6 0 634 701 633353792 633353725 3.410000e-15 93.5
51 TraesCS2A01G295700 chr4A 88.710 62 6 1 635 696 663735173 663735233 1.240000e-09 75.0
52 TraesCS2A01G295700 chr3D 86.170 94 13 0 551 644 172356578 172356671 5.670000e-18 102.0
53 TraesCS2A01G295700 chr3D 92.063 63 5 0 582 644 383544128 383544066 4.410000e-14 89.8
54 TraesCS2A01G295700 chr3D 88.710 62 6 1 635 696 367233270 367233210 1.240000e-09 75.0
55 TraesCS2A01G295700 chr5D 87.013 77 10 0 568 644 467186208 467186132 1.590000e-13 87.9
56 TraesCS2A01G295700 chr5D 92.063 63 2 3 584 644 121171686 121171625 5.710000e-13 86.1
57 TraesCS2A01G295700 chr6D 85.897 78 11 0 567 644 8137998 8137921 2.050000e-12 84.2
58 TraesCS2A01G295700 chr6D 90.476 63 6 0 582 644 413075526 413075588 2.050000e-12 84.2
59 TraesCS2A01G295700 chr6D 84.810 79 12 0 566 644 296857848 296857926 2.650000e-11 80.5
60 TraesCS2A01G295700 chr6D 89.062 64 5 2 634 696 65644018 65644080 9.550000e-11 78.7
61 TraesCS2A01G295700 chr6D 85.938 64 8 1 582 644 126433442 126433505 2.070000e-07 67.6
62 TraesCS2A01G295700 chr1B 92.982 57 4 0 588 644 217290722 217290666 2.050000e-12 84.2
63 TraesCS2A01G295700 chr1B 89.062 64 7 0 581 644 33984344 33984407 2.650000e-11 80.5
64 TraesCS2A01G295700 chr1B 93.878 49 3 0 666 714 616126347 616126299 1.240000e-09 75.0
65 TraesCS2A01G295700 chr1A 83.333 96 11 2 549 644 189717536 189717446 2.050000e-12 84.2
66 TraesCS2A01G295700 chr1A 88.060 67 8 0 634 700 539687621 539687555 2.650000e-11 80.5
67 TraesCS2A01G295700 chr1A 87.097 62 8 0 583 644 3432158 3432097 1.600000e-08 71.3
68 TraesCS2A01G295700 chr1A 88.462 52 6 0 589 640 539687633 539687582 2.670000e-06 63.9
69 TraesCS2A01G295700 chr7D 90.476 63 5 1 634 696 94652718 94652779 7.380000e-12 82.4
70 TraesCS2A01G295700 chr7D 88.889 63 6 1 634 696 30043679 30043740 3.430000e-10 76.8
71 TraesCS2A01G295700 chr6B 87.302 63 8 0 634 696 700578482 700578544 4.440000e-09 73.1
72 TraesCS2A01G295700 chr6B 87.302 63 7 1 634 696 213733046 213733107 1.600000e-08 71.3
73 TraesCS2A01G295700 chr6B 87.302 63 7 1 634 696 707440019 707440080 1.600000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G295700 chr2A 508513494 508516703 3209 False 5928.000000 5928 100.0000 1 3210 1 chr2A.!!$F1 3209
1 TraesCS2A01G295700 chr2D 376130936 376133937 3001 False 758.200000 2435 91.4896 1 3210 5 chr2D.!!$F4 3209
2 TraesCS2A01G295700 chr2B 447489208 447491480 2272 True 1059.666667 2385 92.9280 732 3205 3 chr2B.!!$R4 2473

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 155 0.476338 TCCACCTAAGGCTGCAAACA 59.524 50.0 0.5 0.0 0.0 2.83 F
934 1062 0.595095 CTTCTTGTTGCAGCCTGTCC 59.405 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 1785 1.218047 GCCGACTGGTGATACTGCA 59.782 57.895 0.00 0.0 37.67 4.41 R
2790 3006 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.552445 TTTTCCTTCCACCTCAATTTTTCA 57.448 33.333 0.00 0.00 0.00 2.69
39 40 5.529581 TTCCTTCCACCTCAATTTTTCAC 57.470 39.130 0.00 0.00 0.00 3.18
52 54 1.953559 TTTTCACACGAGAGCTTGCT 58.046 45.000 0.00 0.00 0.00 3.91
65 67 1.912043 AGCTTGCTAAGATGGTGAGGT 59.088 47.619 0.00 0.00 0.00 3.85
69 71 1.204704 TGCTAAGATGGTGAGGTGTCG 59.795 52.381 0.00 0.00 0.00 4.35
77 79 0.526662 GGTGAGGTGTCGTCGATCTT 59.473 55.000 0.00 0.00 0.00 2.40
94 97 4.379499 CGATCTTTGCCTTTTTGGAGTACC 60.379 45.833 0.00 0.00 38.35 3.34
95 98 3.227614 TCTTTGCCTTTTTGGAGTACCC 58.772 45.455 0.00 0.00 38.35 3.69
102 105 2.570415 TTTTGGAGTACCCGATTGCA 57.430 45.000 0.00 0.00 37.93 4.08
104 107 2.799126 TTGGAGTACCCGATTGCATT 57.201 45.000 0.00 0.00 37.93 3.56
107 110 2.172505 TGGAGTACCCGATTGCATTGAT 59.827 45.455 0.00 0.00 37.93 2.57
119 122 5.632244 ATTGCATTGATTTTTGGCCTTTC 57.368 34.783 3.32 0.00 0.00 2.62
120 123 3.410508 TGCATTGATTTTTGGCCTTTCC 58.589 40.909 3.32 0.00 0.00 3.13
121 124 2.749076 GCATTGATTTTTGGCCTTTCCC 59.251 45.455 3.32 0.00 0.00 3.97
122 125 3.559811 GCATTGATTTTTGGCCTTTCCCT 60.560 43.478 3.32 0.00 0.00 4.20
127 131 5.341169 TGATTTTTGGCCTTTCCCTTATCT 58.659 37.500 3.32 0.00 0.00 1.98
151 155 0.476338 TCCACCTAAGGCTGCAAACA 59.524 50.000 0.50 0.00 0.00 2.83
186 190 3.305471 GCGAGTTGGACTAGAGTCAACTT 60.305 47.826 21.31 11.74 46.47 2.66
196 200 7.504911 TGGACTAGAGTCAACTTAGTTTGTACT 59.495 37.037 11.64 0.00 46.47 2.73
253 257 6.415573 AGGTTGAACTGTAAAAAGTGACTCT 58.584 36.000 0.00 0.00 0.00 3.24
271 275 9.754382 AGTGACTCTTTTTAGTTTGTAACGATA 57.246 29.630 0.00 0.00 36.23 2.92
287 291 7.704271 TGTAACGATATCGAGTTGATCTCTTT 58.296 34.615 30.75 12.38 43.02 2.52
361 366 7.482169 AGATAGACCAGAACACAACATAAGA 57.518 36.000 0.00 0.00 0.00 2.10
362 367 7.907389 AGATAGACCAGAACACAACATAAGAA 58.093 34.615 0.00 0.00 0.00 2.52
363 368 8.375506 AGATAGACCAGAACACAACATAAGAAA 58.624 33.333 0.00 0.00 0.00 2.52
364 369 9.167311 GATAGACCAGAACACAACATAAGAAAT 57.833 33.333 0.00 0.00 0.00 2.17
365 370 7.440523 AGACCAGAACACAACATAAGAAATC 57.559 36.000 0.00 0.00 0.00 2.17
366 371 6.998074 AGACCAGAACACAACATAAGAAATCA 59.002 34.615 0.00 0.00 0.00 2.57
367 372 6.970484 ACCAGAACACAACATAAGAAATCAC 58.030 36.000 0.00 0.00 0.00 3.06
368 373 6.772716 ACCAGAACACAACATAAGAAATCACT 59.227 34.615 0.00 0.00 0.00 3.41
369 374 7.936847 ACCAGAACACAACATAAGAAATCACTA 59.063 33.333 0.00 0.00 0.00 2.74
370 375 8.950210 CCAGAACACAACATAAGAAATCACTAT 58.050 33.333 0.00 0.00 0.00 2.12
419 424 7.836685 TCTCAATTGAAGACTAGTATCCACTCT 59.163 37.037 9.88 0.00 36.14 3.24
436 443 6.223852 TCCACTCTGTCTTGAATTACTTGTC 58.776 40.000 0.00 0.00 0.00 3.18
440 447 9.261180 CACTCTGTCTTGAATTACTTGTCTTAA 57.739 33.333 0.00 0.00 0.00 1.85
471 478 8.229253 TCTAAATACGGATAGTGTCTAGCAAA 57.771 34.615 0.00 0.00 0.00 3.68
479 486 7.014326 ACGGATAGTGTCTAGCAAAAGATCATA 59.986 37.037 0.00 0.00 0.00 2.15
497 504 9.545105 AAGATCATAAATGAACTAGCAAGAGAG 57.455 33.333 3.49 0.00 38.73 3.20
511 518 5.147162 AGCAAGAGAGAAAAATAAAACGCG 58.853 37.500 3.53 3.53 0.00 6.01
512 519 4.909880 GCAAGAGAGAAAAATAAAACGCGT 59.090 37.500 5.58 5.58 0.00 6.01
513 520 5.058128 GCAAGAGAGAAAAATAAAACGCGTC 59.942 40.000 14.44 0.00 0.00 5.19
517 524 4.213482 AGAGAAAAATAAAACGCGTCTGCT 59.787 37.500 14.44 0.00 39.65 4.24
528 535 1.397693 CGCGTCTGCTCTCAAACTTTG 60.398 52.381 0.00 0.00 39.65 2.77
541 548 7.468631 GCTCTCAAACTTTGGTCAGAATAACAA 60.469 37.037 1.62 0.00 0.00 2.83
580 592 5.389516 CCTCCGTTTCAAATTAGTTGACTCG 60.390 44.000 0.00 3.41 46.09 4.18
581 593 4.708601 CCGTTTCAAATTAGTTGACTCGG 58.291 43.478 17.35 17.35 46.09 4.63
582 594 5.585500 CGTTTCAAATTAGTTGACTCGGA 57.415 39.130 0.00 0.00 46.09 4.55
583 595 6.165659 CGTTTCAAATTAGTTGACTCGGAT 57.834 37.500 0.00 0.00 46.09 4.18
584 596 6.599437 CGTTTCAAATTAGTTGACTCGGATT 58.401 36.000 0.00 0.00 46.09 3.01
585 597 7.075741 CGTTTCAAATTAGTTGACTCGGATTT 58.924 34.615 0.00 0.00 46.09 2.17
586 598 7.589954 CGTTTCAAATTAGTTGACTCGGATTTT 59.410 33.333 0.00 0.00 46.09 1.82
587 599 9.244799 GTTTCAAATTAGTTGACTCGGATTTTT 57.755 29.630 0.00 0.00 46.09 1.94
588 600 9.458374 TTTCAAATTAGTTGACTCGGATTTTTC 57.542 29.630 0.00 0.00 46.09 2.29
589 601 8.391075 TCAAATTAGTTGACTCGGATTTTTCT 57.609 30.769 0.00 0.00 41.47 2.52
590 602 9.496873 TCAAATTAGTTGACTCGGATTTTTCTA 57.503 29.630 0.00 0.00 41.47 2.10
591 603 9.760660 CAAATTAGTTGACTCGGATTTTTCTAG 57.239 33.333 0.00 0.00 39.87 2.43
592 604 9.720769 AAATTAGTTGACTCGGATTTTTCTAGA 57.279 29.630 0.00 0.00 0.00 2.43
593 605 9.892130 AATTAGTTGACTCGGATTTTTCTAGAT 57.108 29.630 0.00 0.00 0.00 1.98
595 607 9.798994 TTAGTTGACTCGGATTTTTCTAGATAC 57.201 33.333 0.00 0.00 0.00 2.24
596 608 7.266400 AGTTGACTCGGATTTTTCTAGATACC 58.734 38.462 0.00 0.00 0.00 2.73
597 609 6.785337 TGACTCGGATTTTTCTAGATACCA 57.215 37.500 0.00 0.00 0.00 3.25
598 610 7.177832 TGACTCGGATTTTTCTAGATACCAA 57.822 36.000 0.00 0.00 0.00 3.67
599 611 7.792032 TGACTCGGATTTTTCTAGATACCAAT 58.208 34.615 0.00 0.00 0.00 3.16
600 612 7.710907 TGACTCGGATTTTTCTAGATACCAATG 59.289 37.037 0.00 0.00 0.00 2.82
601 613 7.565680 ACTCGGATTTTTCTAGATACCAATGT 58.434 34.615 0.00 0.00 0.00 2.71
602 614 8.701895 ACTCGGATTTTTCTAGATACCAATGTA 58.298 33.333 0.00 0.00 0.00 2.29
603 615 9.712305 CTCGGATTTTTCTAGATACCAATGTAT 57.288 33.333 0.00 0.00 40.41 2.29
616 628 8.644318 GATACCAATGTATCTAGACACGTTTT 57.356 34.615 5.86 0.00 46.54 2.43
617 629 9.740239 GATACCAATGTATCTAGACACGTTTTA 57.260 33.333 5.86 2.01 46.54 1.52
618 630 9.745880 ATACCAATGTATCTAGACACGTTTTAG 57.254 33.333 5.86 1.74 31.99 1.85
632 644 6.390987 CACGTTTTAGTGTTAGAGACATCC 57.609 41.667 0.00 0.00 41.10 3.51
641 653 7.876936 AGTGTTAGAGACATCCGTATTTAGA 57.123 36.000 0.00 0.00 41.10 2.10
642 654 7.705214 AGTGTTAGAGACATCCGTATTTAGAC 58.295 38.462 0.00 0.00 41.10 2.59
643 655 7.338703 AGTGTTAGAGACATCCGTATTTAGACA 59.661 37.037 0.00 0.00 41.10 3.41
644 656 7.431668 GTGTTAGAGACATCCGTATTTAGACAC 59.568 40.741 0.00 0.00 41.10 3.67
645 657 5.171147 AGAGACATCCGTATTTAGACACG 57.829 43.478 0.00 0.00 37.89 4.49
646 658 4.639310 AGAGACATCCGTATTTAGACACGT 59.361 41.667 0.00 0.00 36.44 4.49
647 659 5.125097 AGAGACATCCGTATTTAGACACGTT 59.875 40.000 0.00 0.00 36.44 3.99
648 660 5.717119 AGACATCCGTATTTAGACACGTTT 58.283 37.500 0.00 0.00 36.44 3.60
649 661 6.161381 AGACATCCGTATTTAGACACGTTTT 58.839 36.000 0.00 0.00 36.44 2.43
650 662 7.315142 AGACATCCGTATTTAGACACGTTTTA 58.685 34.615 0.00 0.00 36.44 1.52
651 663 7.487189 AGACATCCGTATTTAGACACGTTTTAG 59.513 37.037 0.00 0.00 36.44 1.85
652 664 7.092716 ACATCCGTATTTAGACACGTTTTAGT 58.907 34.615 0.00 0.00 36.44 2.24
653 665 6.932901 TCCGTATTTAGACACGTTTTAGTG 57.067 37.500 0.00 0.00 46.83 2.74
667 679 7.946043 CACGTTTTAGTGTTAGATACATTCGT 58.054 34.615 0.00 0.00 39.39 3.85
668 680 9.064804 CACGTTTTAGTGTTAGATACATTCGTA 57.935 33.333 0.00 0.00 39.39 3.43
669 681 9.793252 ACGTTTTAGTGTTAGATACATTCGTAT 57.207 29.630 0.00 0.00 41.16 3.06
717 729 6.753913 TTGAGACCAAGATAATAGATGCCT 57.246 37.500 0.00 0.00 0.00 4.75
718 730 6.352016 TGAGACCAAGATAATAGATGCCTC 57.648 41.667 0.00 0.00 0.00 4.70
719 731 5.247110 TGAGACCAAGATAATAGATGCCTCC 59.753 44.000 0.00 0.00 0.00 4.30
720 732 5.158141 AGACCAAGATAATAGATGCCTCCA 58.842 41.667 0.00 0.00 0.00 3.86
721 733 5.608437 AGACCAAGATAATAGATGCCTCCAA 59.392 40.000 0.00 0.00 0.00 3.53
722 734 6.274200 AGACCAAGATAATAGATGCCTCCAAT 59.726 38.462 0.00 0.00 0.00 3.16
723 735 7.459125 AGACCAAGATAATAGATGCCTCCAATA 59.541 37.037 0.00 0.00 0.00 1.90
724 736 7.398024 ACCAAGATAATAGATGCCTCCAATAC 58.602 38.462 0.00 0.00 0.00 1.89
727 739 9.814899 CAAGATAATAGATGCCTCCAATACTAG 57.185 37.037 0.00 0.00 0.00 2.57
810 938 3.915437 CCAGTGTTGGCTTAAAATCGT 57.085 42.857 0.00 0.00 37.73 3.73
891 1019 6.642683 ATCTGTAAGTCGAACCAAAATACG 57.357 37.500 0.00 0.00 33.76 3.06
892 1020 4.925054 TCTGTAAGTCGAACCAAAATACGG 59.075 41.667 0.00 0.00 33.76 4.02
893 1021 4.880759 TGTAAGTCGAACCAAAATACGGA 58.119 39.130 0.00 0.00 0.00 4.69
894 1022 4.925054 TGTAAGTCGAACCAAAATACGGAG 59.075 41.667 0.00 0.00 0.00 4.63
895 1023 9.343075 TCTGTAAGTCGAACCAAAATACGGAGT 62.343 40.741 0.00 0.00 39.44 3.85
911 1039 2.667724 CGGAGTACAACGTCTGAACCTC 60.668 54.545 0.00 0.00 0.00 3.85
918 1046 2.418983 ACGTCTGAACCTCGAACTTC 57.581 50.000 0.00 0.00 0.00 3.01
931 1059 1.334419 CGAACTTCTTGTTGCAGCCTG 60.334 52.381 0.00 0.00 39.30 4.85
934 1062 0.595095 CTTCTTGTTGCAGCCTGTCC 59.405 55.000 0.00 0.00 0.00 4.02
1017 1175 5.069781 CCATAAAAAGTGAAACCCACCAGAA 59.930 40.000 0.00 0.00 46.87 3.02
1032 1190 3.835395 CACCAGAACTCCTTACCTTCTCT 59.165 47.826 0.00 0.00 0.00 3.10
1033 1191 4.081917 CACCAGAACTCCTTACCTTCTCTC 60.082 50.000 0.00 0.00 0.00 3.20
1034 1192 4.202738 ACCAGAACTCCTTACCTTCTCTCT 60.203 45.833 0.00 0.00 0.00 3.10
1265 1435 2.868787 GAGTCGTCGTTCGTCGCC 60.869 66.667 6.93 0.00 40.80 5.54
1301 1471 2.162608 CGAGGACGACTTCATGTTCTCT 59.837 50.000 0.00 0.00 42.66 3.10
1304 1474 3.829601 AGGACGACTTCATGTTCTCTTCT 59.170 43.478 0.00 0.00 0.00 2.85
1915 2085 1.451028 GAGGTGATGTGGCTCTGGC 60.451 63.158 0.00 0.00 37.82 4.85
1994 2164 1.273886 GTAGATCGGGAGGGAAGATGC 59.726 57.143 0.00 0.00 0.00 3.91
2149 2319 4.662278 TGGGAGTTTTCTGTAATTCAGGG 58.338 43.478 5.45 0.00 43.76 4.45
2217 2388 5.768164 TCTCAAGGTTTATTTTGTCCACTCC 59.232 40.000 0.00 0.00 0.00 3.85
2218 2389 5.701224 TCAAGGTTTATTTTGTCCACTCCT 58.299 37.500 0.00 0.00 0.00 3.69
2241 2412 8.053963 TCCTATCCAAATGGTATTTCGGTTTTA 58.946 33.333 0.00 0.00 36.34 1.52
2336 2509 4.148871 CCGTATGTGCATTCTCTAATCGTG 59.851 45.833 0.00 0.00 0.00 4.35
2359 2532 4.374843 TTGATATGCTGTTCAACCATGC 57.625 40.909 0.00 0.00 0.00 4.06
2386 2559 6.440647 TGCCTACTTCCTAGAGAATTTCAGAA 59.559 38.462 0.00 0.00 32.82 3.02
2387 2560 6.983890 GCCTACTTCCTAGAGAATTTCAGAAG 59.016 42.308 0.00 5.66 36.53 2.85
2414 2587 3.326297 TGTGTCAACAGTATGATCCCACA 59.674 43.478 0.00 0.00 39.69 4.17
2415 2588 4.019411 TGTGTCAACAGTATGATCCCACAT 60.019 41.667 0.00 0.00 39.69 3.21
2435 2650 2.969443 ACGAACTGCAAGCAATGTAC 57.031 45.000 0.00 0.00 37.60 2.90
2478 2694 1.006337 GTTGGAAAGCATTGCCGCA 60.006 52.632 4.70 0.00 0.00 5.69
2483 2699 1.134226 GAAAGCATTGCCGCATATGC 58.866 50.000 18.08 18.08 45.77 3.14
2489 2705 3.986072 TTGCCGCATATGCCGTGGT 62.986 57.895 21.77 0.00 37.91 4.16
2589 2805 5.408880 AGGTGAGCTTTTCTTAGTACTCC 57.591 43.478 0.00 0.00 0.00 3.85
2590 2806 4.223255 AGGTGAGCTTTTCTTAGTACTCCC 59.777 45.833 0.00 0.00 0.00 4.30
2591 2807 4.223255 GGTGAGCTTTTCTTAGTACTCCCT 59.777 45.833 0.00 0.00 0.00 4.20
2592 2808 5.412640 GTGAGCTTTTCTTAGTACTCCCTC 58.587 45.833 0.00 0.00 0.00 4.30
2593 2809 5.186215 GTGAGCTTTTCTTAGTACTCCCTCT 59.814 44.000 0.00 0.00 0.00 3.69
2594 2810 5.186021 TGAGCTTTTCTTAGTACTCCCTCTG 59.814 44.000 0.00 0.00 0.00 3.35
2595 2811 5.088026 AGCTTTTCTTAGTACTCCCTCTGT 58.912 41.667 0.00 0.00 0.00 3.41
2596 2812 5.544562 AGCTTTTCTTAGTACTCCCTCTGTT 59.455 40.000 0.00 0.00 0.00 3.16
2597 2813 5.639931 GCTTTTCTTAGTACTCCCTCTGTTG 59.360 44.000 0.00 0.00 0.00 3.33
2598 2814 4.803098 TTCTTAGTACTCCCTCTGTTGC 57.197 45.455 0.00 0.00 0.00 4.17
2599 2815 4.048970 TCTTAGTACTCCCTCTGTTGCT 57.951 45.455 0.00 0.00 0.00 3.91
2600 2816 5.188988 TCTTAGTACTCCCTCTGTTGCTA 57.811 43.478 0.00 0.00 0.00 3.49
2601 2817 5.194432 TCTTAGTACTCCCTCTGTTGCTAG 58.806 45.833 0.00 0.00 0.00 3.42
2602 2818 3.459710 AGTACTCCCTCTGTTGCTAGT 57.540 47.619 0.00 0.00 0.00 2.57
2603 2819 3.093057 AGTACTCCCTCTGTTGCTAGTG 58.907 50.000 0.00 0.00 0.00 2.74
2604 2820 2.016905 ACTCCCTCTGTTGCTAGTGT 57.983 50.000 0.00 0.00 0.00 3.55
2605 2821 2.330216 ACTCCCTCTGTTGCTAGTGTT 58.670 47.619 0.00 0.00 0.00 3.32
2606 2822 2.300437 ACTCCCTCTGTTGCTAGTGTTC 59.700 50.000 0.00 0.00 0.00 3.18
2607 2823 2.300152 CTCCCTCTGTTGCTAGTGTTCA 59.700 50.000 0.00 0.00 0.00 3.18
2608 2824 2.703536 TCCCTCTGTTGCTAGTGTTCAA 59.296 45.455 0.00 0.00 0.00 2.69
2609 2825 2.808543 CCCTCTGTTGCTAGTGTTCAAC 59.191 50.000 4.53 4.53 41.99 3.18
2610 2826 2.476619 CCTCTGTTGCTAGTGTTCAACG 59.523 50.000 6.50 0.00 43.91 4.10
2611 2827 2.476619 CTCTGTTGCTAGTGTTCAACGG 59.523 50.000 11.50 11.50 45.89 4.44
2612 2828 2.479837 CTGTTGCTAGTGTTCAACGGA 58.520 47.619 12.08 0.00 46.89 4.69
2613 2829 3.067106 CTGTTGCTAGTGTTCAACGGAT 58.933 45.455 12.08 0.00 46.89 4.18
2614 2830 2.805671 TGTTGCTAGTGTTCAACGGATG 59.194 45.455 6.50 0.00 43.91 3.51
2615 2831 2.806244 GTTGCTAGTGTTCAACGGATGT 59.194 45.455 0.00 0.00 34.12 3.06
2616 2832 3.945981 TGCTAGTGTTCAACGGATGTA 57.054 42.857 0.00 0.00 0.00 2.29
2617 2833 4.465632 TGCTAGTGTTCAACGGATGTAT 57.534 40.909 0.00 0.00 0.00 2.29
2618 2834 5.585820 TGCTAGTGTTCAACGGATGTATA 57.414 39.130 0.00 0.00 0.00 1.47
2619 2835 6.156748 TGCTAGTGTTCAACGGATGTATAT 57.843 37.500 0.00 0.00 0.00 0.86
2620 2836 7.279750 TGCTAGTGTTCAACGGATGTATATA 57.720 36.000 0.00 0.00 0.00 0.86
2621 2837 7.368059 TGCTAGTGTTCAACGGATGTATATAG 58.632 38.462 0.00 0.00 0.00 1.31
2622 2838 7.229907 TGCTAGTGTTCAACGGATGTATATAGA 59.770 37.037 0.00 0.00 0.00 1.98
2623 2839 7.537991 GCTAGTGTTCAACGGATGTATATAGAC 59.462 40.741 0.00 0.00 0.00 2.59
2624 2840 7.342769 AGTGTTCAACGGATGTATATAGACA 57.657 36.000 2.07 2.07 0.00 3.41
2625 2841 7.952671 AGTGTTCAACGGATGTATATAGACAT 58.047 34.615 12.70 12.70 42.82 3.06
2626 2842 9.074576 AGTGTTCAACGGATGTATATAGACATA 57.925 33.333 12.82 0.00 40.18 2.29
2627 2843 9.856488 GTGTTCAACGGATGTATATAGACATAT 57.144 33.333 12.82 0.00 40.18 1.78
2654 2870 6.690194 AGAATGTAGATCCACTCATTTTGC 57.310 37.500 0.00 0.00 31.65 3.68
2655 2871 6.421485 AGAATGTAGATCCACTCATTTTGCT 58.579 36.000 0.00 0.00 31.65 3.91
2656 2872 6.541641 AGAATGTAGATCCACTCATTTTGCTC 59.458 38.462 0.00 0.00 31.65 4.26
2657 2873 4.517285 TGTAGATCCACTCATTTTGCTCC 58.483 43.478 0.00 0.00 0.00 4.70
2658 2874 2.636830 AGATCCACTCATTTTGCTCCG 58.363 47.619 0.00 0.00 0.00 4.63
2659 2875 2.026822 AGATCCACTCATTTTGCTCCGT 60.027 45.455 0.00 0.00 0.00 4.69
2660 2876 3.197766 AGATCCACTCATTTTGCTCCGTA 59.802 43.478 0.00 0.00 0.00 4.02
2661 2877 3.627395 TCCACTCATTTTGCTCCGTAT 57.373 42.857 0.00 0.00 0.00 3.06
2662 2878 3.270027 TCCACTCATTTTGCTCCGTATG 58.730 45.455 0.00 0.00 0.00 2.39
2663 2879 3.009723 CCACTCATTTTGCTCCGTATGT 58.990 45.455 0.00 0.00 0.00 2.29
2664 2880 4.081365 TCCACTCATTTTGCTCCGTATGTA 60.081 41.667 0.00 0.00 0.00 2.29
2665 2881 4.271049 CCACTCATTTTGCTCCGTATGTAG 59.729 45.833 0.00 0.00 0.00 2.74
2666 2882 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2667 2883 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2668 2884 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2669 2885 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
2670 2886 0.101759 TTGCTCCGTATGTAGTCCGC 59.898 55.000 0.00 0.00 0.00 5.54
2671 2887 1.033202 TGCTCCGTATGTAGTCCGCA 61.033 55.000 0.00 0.00 0.00 5.69
2672 2888 0.314302 GCTCCGTATGTAGTCCGCAT 59.686 55.000 0.00 0.00 0.00 4.73
2673 2889 1.269621 GCTCCGTATGTAGTCCGCATT 60.270 52.381 0.00 0.00 0.00 3.56
2674 2890 2.802057 GCTCCGTATGTAGTCCGCATTT 60.802 50.000 0.00 0.00 0.00 2.32
2675 2891 2.794910 CTCCGTATGTAGTCCGCATTTG 59.205 50.000 0.00 0.00 0.00 2.32
2676 2892 2.427812 TCCGTATGTAGTCCGCATTTGA 59.572 45.455 0.00 0.00 0.00 2.69
2677 2893 3.119065 TCCGTATGTAGTCCGCATTTGAA 60.119 43.478 0.00 0.00 0.00 2.69
2678 2894 3.807622 CCGTATGTAGTCCGCATTTGAAT 59.192 43.478 0.00 0.00 0.00 2.57
2679 2895 4.084537 CCGTATGTAGTCCGCATTTGAATC 60.085 45.833 0.00 0.00 0.00 2.52
2680 2896 4.745125 CGTATGTAGTCCGCATTTGAATCT 59.255 41.667 0.00 0.00 0.00 2.40
2681 2897 5.107837 CGTATGTAGTCCGCATTTGAATCTC 60.108 44.000 0.00 0.00 0.00 2.75
2682 2898 3.531538 TGTAGTCCGCATTTGAATCTCC 58.468 45.455 0.00 0.00 0.00 3.71
2683 2899 2.787473 AGTCCGCATTTGAATCTCCA 57.213 45.000 0.00 0.00 0.00 3.86
2684 2900 3.071874 AGTCCGCATTTGAATCTCCAA 57.928 42.857 0.00 0.00 0.00 3.53
2685 2901 3.420893 AGTCCGCATTTGAATCTCCAAA 58.579 40.909 0.00 0.00 39.93 3.28
2686 2902 3.826157 AGTCCGCATTTGAATCTCCAAAA 59.174 39.130 0.00 0.00 39.20 2.44
2687 2903 4.280677 AGTCCGCATTTGAATCTCCAAAAA 59.719 37.500 0.00 0.00 39.20 1.94
2688 2904 4.622740 GTCCGCATTTGAATCTCCAAAAAG 59.377 41.667 0.00 0.00 39.20 2.27
2689 2905 4.522405 TCCGCATTTGAATCTCCAAAAAGA 59.478 37.500 0.00 0.00 39.20 2.52
2690 2906 4.622740 CCGCATTTGAATCTCCAAAAAGAC 59.377 41.667 0.00 0.00 39.20 3.01
2691 2907 5.464168 CGCATTTGAATCTCCAAAAAGACT 58.536 37.500 0.00 0.00 39.20 3.24
2692 2908 5.922544 CGCATTTGAATCTCCAAAAAGACTT 59.077 36.000 0.00 0.00 39.20 3.01
2693 2909 7.083858 CGCATTTGAATCTCCAAAAAGACTTA 58.916 34.615 0.00 0.00 39.20 2.24
2694 2910 7.756722 CGCATTTGAATCTCCAAAAAGACTTAT 59.243 33.333 0.00 0.00 39.20 1.73
2699 2915 9.449719 TTGAATCTCCAAAAAGACTTATACTCC 57.550 33.333 0.00 0.00 0.00 3.85
2700 2916 8.047310 TGAATCTCCAAAAAGACTTATACTCCC 58.953 37.037 0.00 0.00 0.00 4.30
2701 2917 7.757242 ATCTCCAAAAAGACTTATACTCCCT 57.243 36.000 0.00 0.00 0.00 4.20
2702 2918 7.184067 TCTCCAAAAAGACTTATACTCCCTC 57.816 40.000 0.00 0.00 0.00 4.30
2703 2919 6.729100 TCTCCAAAAAGACTTATACTCCCTCA 59.271 38.462 0.00 0.00 0.00 3.86
2704 2920 7.236847 TCTCCAAAAAGACTTATACTCCCTCAA 59.763 37.037 0.00 0.00 0.00 3.02
2705 2921 7.928873 TCCAAAAAGACTTATACTCCCTCAAT 58.071 34.615 0.00 0.00 0.00 2.57
2706 2922 9.053472 TCCAAAAAGACTTATACTCCCTCAATA 57.947 33.333 0.00 0.00 0.00 1.90
2707 2923 9.331282 CCAAAAAGACTTATACTCCCTCAATAG 57.669 37.037 0.00 0.00 0.00 1.73
2708 2924 9.892130 CAAAAAGACTTATACTCCCTCAATAGT 57.108 33.333 0.00 0.00 0.00 2.12
2710 2926 9.892130 AAAAGACTTATACTCCCTCAATAGTTG 57.108 33.333 0.00 0.00 0.00 3.16
2711 2927 8.611051 AAGACTTATACTCCCTCAATAGTTGT 57.389 34.615 0.00 0.00 0.00 3.32
2712 2928 8.240267 AGACTTATACTCCCTCAATAGTTGTC 57.760 38.462 0.00 0.00 0.00 3.18
2713 2929 7.839705 AGACTTATACTCCCTCAATAGTTGTCA 59.160 37.037 0.00 0.00 0.00 3.58
2714 2930 8.554490 ACTTATACTCCCTCAATAGTTGTCAT 57.446 34.615 0.00 0.00 0.00 3.06
2715 2931 8.643324 ACTTATACTCCCTCAATAGTTGTCATC 58.357 37.037 0.00 0.00 0.00 2.92
2716 2932 8.547481 TTATACTCCCTCAATAGTTGTCATCA 57.453 34.615 0.00 0.00 0.00 3.07
2717 2933 5.762179 ACTCCCTCAATAGTTGTCATCAA 57.238 39.130 0.00 0.00 0.00 2.57
2718 2934 6.126863 ACTCCCTCAATAGTTGTCATCAAA 57.873 37.500 0.00 0.00 35.20 2.69
2719 2935 6.542821 ACTCCCTCAATAGTTGTCATCAAAA 58.457 36.000 0.00 0.00 35.20 2.44
2720 2936 7.177878 ACTCCCTCAATAGTTGTCATCAAAAT 58.822 34.615 0.00 0.00 35.20 1.82
2721 2937 7.121759 ACTCCCTCAATAGTTGTCATCAAAATG 59.878 37.037 0.00 0.00 35.20 2.32
2722 2938 6.377996 TCCCTCAATAGTTGTCATCAAAATGG 59.622 38.462 0.00 0.00 35.20 3.16
2723 2939 6.377996 CCCTCAATAGTTGTCATCAAAATGGA 59.622 38.462 0.00 0.00 35.20 3.41
2724 2940 7.069085 CCCTCAATAGTTGTCATCAAAATGGAT 59.931 37.037 0.00 0.00 35.20 3.41
2725 2941 7.919091 CCTCAATAGTTGTCATCAAAATGGATG 59.081 37.037 0.00 0.00 44.78 3.51
2736 2952 6.646267 CATCAAAATGGATGAAAAGGGATGT 58.354 36.000 0.00 0.00 46.00 3.06
2737 2953 7.784037 CATCAAAATGGATGAAAAGGGATGTA 58.216 34.615 0.00 0.00 46.00 2.29
2738 2954 7.976414 TCAAAATGGATGAAAAGGGATGTAT 57.024 32.000 0.00 0.00 0.00 2.29
2739 2955 8.010733 TCAAAATGGATGAAAAGGGATGTATC 57.989 34.615 0.00 0.00 0.00 2.24
2740 2956 7.840716 TCAAAATGGATGAAAAGGGATGTATCT 59.159 33.333 0.00 0.00 0.00 1.98
2741 2957 9.135189 CAAAATGGATGAAAAGGGATGTATCTA 57.865 33.333 0.00 0.00 0.00 1.98
2742 2958 8.930846 AAATGGATGAAAAGGGATGTATCTAG 57.069 34.615 0.00 0.00 0.00 2.43
2743 2959 7.878621 ATGGATGAAAAGGGATGTATCTAGA 57.121 36.000 0.00 0.00 0.00 2.43
2744 2960 7.690454 TGGATGAAAAGGGATGTATCTAGAA 57.310 36.000 0.00 0.00 0.00 2.10
2745 2961 7.509546 TGGATGAAAAGGGATGTATCTAGAAC 58.490 38.462 0.00 0.00 0.00 3.01
2746 2962 7.348274 TGGATGAAAAGGGATGTATCTAGAACT 59.652 37.037 0.00 0.00 0.00 3.01
2747 2963 8.871125 GGATGAAAAGGGATGTATCTAGAACTA 58.129 37.037 0.00 0.00 0.00 2.24
2755 2971 9.364653 AGGGATGTATCTAGAACTAAAATACGT 57.635 33.333 0.00 0.00 0.00 3.57
2756 2972 9.623350 GGGATGTATCTAGAACTAAAATACGTC 57.377 37.037 17.13 17.13 37.78 4.34
2770 2986 9.796180 ACTAAAATACGTCTAGATACATCTCCT 57.204 33.333 0.00 0.00 38.32 3.69
2777 2993 8.113173 ACGTCTAGATACATCTCCTTTAATCC 57.887 38.462 0.00 0.00 38.32 3.01
2778 2994 7.724506 ACGTCTAGATACATCTCCTTTAATCCA 59.275 37.037 0.00 0.00 38.32 3.41
2779 2995 8.744652 CGTCTAGATACATCTCCTTTAATCCAT 58.255 37.037 0.00 0.00 38.32 3.41
2787 3003 8.827832 ACATCTCCTTTAATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
2788 3004 8.689972 ACATCTCCTTTAATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
2789 3005 8.689061 CATCTCCTTTAATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
2790 3006 8.648698 TCTCCTTTAATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
2791 3007 8.742777 TCTCCTTTAATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
2792 3008 8.421249 TCCTTTAATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
2793 3009 9.527157 TCCTTTAATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
2799 3015 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
2800 3016 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
2801 3017 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
2802 3018 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2803 3019 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2804 3020 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2805 3021 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2806 3022 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2807 3023 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2808 3024 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2809 3025 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2810 3026 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2811 3027 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2812 3028 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2813 3029 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
2814 3030 0.032813 TTCCGGACGGAGGGAGTATT 60.033 55.000 13.64 0.00 46.06 1.89
2815 3031 0.032813 TCCGGACGGAGGGAGTATTT 60.033 55.000 9.76 0.00 39.76 1.40
2816 3032 1.215173 TCCGGACGGAGGGAGTATTTA 59.785 52.381 9.76 0.00 39.76 1.40
2817 3033 1.612463 CCGGACGGAGGGAGTATTTAG 59.388 57.143 4.40 0.00 37.50 1.85
2818 3034 2.579873 CGGACGGAGGGAGTATTTAGA 58.420 52.381 0.00 0.00 0.00 2.10
2819 3035 2.954318 CGGACGGAGGGAGTATTTAGAA 59.046 50.000 0.00 0.00 0.00 2.10
2820 3036 3.382546 CGGACGGAGGGAGTATTTAGAAA 59.617 47.826 0.00 0.00 0.00 2.52
2821 3037 4.691175 GGACGGAGGGAGTATTTAGAAAC 58.309 47.826 0.00 0.00 0.00 2.78
2822 3038 4.357996 GACGGAGGGAGTATTTAGAAACG 58.642 47.826 0.00 0.00 0.00 3.60
2823 3039 3.131755 ACGGAGGGAGTATTTAGAAACGG 59.868 47.826 0.00 0.00 0.00 4.44
2824 3040 3.382546 CGGAGGGAGTATTTAGAAACGGA 59.617 47.826 0.00 0.00 0.00 4.69
2825 3041 4.499357 CGGAGGGAGTATTTAGAAACGGAG 60.499 50.000 0.00 0.00 0.00 4.63
2826 3042 4.202233 GGAGGGAGTATTTAGAAACGGAGG 60.202 50.000 0.00 0.00 0.00 4.30
2827 3043 3.710165 AGGGAGTATTTAGAAACGGAGGG 59.290 47.826 0.00 0.00 0.00 4.30
2828 3044 3.708121 GGGAGTATTTAGAAACGGAGGGA 59.292 47.826 0.00 0.00 0.00 4.20
2926 3146 4.558697 GCTACGCCCATTCTTTTCAAAACT 60.559 41.667 0.00 0.00 0.00 2.66
2957 3177 9.899661 TGATTGCTATGTTTAGGTGTAGTATTT 57.100 29.630 0.00 0.00 0.00 1.40
2996 3216 8.908786 CTGGTCTTATCCAGCAAAATAGATAA 57.091 34.615 0.00 0.00 46.53 1.75
2997 3217 9.342308 CTGGTCTTATCCAGCAAAATAGATAAA 57.658 33.333 0.00 0.00 46.53 1.40
2998 3218 9.120538 TGGTCTTATCCAGCAAAATAGATAAAC 57.879 33.333 0.00 0.00 32.40 2.01
2999 3219 9.120538 GGTCTTATCCAGCAAAATAGATAAACA 57.879 33.333 0.00 0.00 32.40 2.83
3001 3221 8.840321 TCTTATCCAGCAAAATAGATAAACAGC 58.160 33.333 0.00 0.00 32.40 4.40
3002 3222 8.518430 TTATCCAGCAAAATAGATAAACAGCA 57.482 30.769 0.00 0.00 30.34 4.41
3003 3223 6.194796 TCCAGCAAAATAGATAAACAGCAC 57.805 37.500 0.00 0.00 0.00 4.40
3004 3224 5.125417 TCCAGCAAAATAGATAAACAGCACC 59.875 40.000 0.00 0.00 0.00 5.01
3005 3225 5.105797 CCAGCAAAATAGATAAACAGCACCA 60.106 40.000 0.00 0.00 0.00 4.17
3006 3226 6.389091 CAGCAAAATAGATAAACAGCACCAA 58.611 36.000 0.00 0.00 0.00 3.67
3007 3227 6.308766 CAGCAAAATAGATAAACAGCACCAAC 59.691 38.462 0.00 0.00 0.00 3.77
3008 3228 6.209391 AGCAAAATAGATAAACAGCACCAACT 59.791 34.615 0.00 0.00 0.00 3.16
3009 3229 6.868339 GCAAAATAGATAAACAGCACCAACTT 59.132 34.615 0.00 0.00 0.00 2.66
3010 3230 7.062255 GCAAAATAGATAAACAGCACCAACTTC 59.938 37.037 0.00 0.00 0.00 3.01
3011 3231 8.299570 CAAAATAGATAAACAGCACCAACTTCT 58.700 33.333 0.00 0.00 0.00 2.85
3012 3232 8.409358 AAATAGATAAACAGCACCAACTTCTT 57.591 30.769 0.00 0.00 0.00 2.52
3013 3233 8.409358 AATAGATAAACAGCACCAACTTCTTT 57.591 30.769 0.00 0.00 0.00 2.52
3014 3234 6.076981 AGATAAACAGCACCAACTTCTTTG 57.923 37.500 0.00 0.00 34.63 2.77
3015 3235 5.827797 AGATAAACAGCACCAACTTCTTTGA 59.172 36.000 0.00 0.00 37.39 2.69
3016 3236 4.799564 AAACAGCACCAACTTCTTTGAA 57.200 36.364 0.00 0.00 37.39 2.69
3023 3279 4.290155 CACCAACTTCTTTGAACCATTCG 58.710 43.478 0.00 0.00 37.39 3.34
3053 3310 6.641314 TGTTTTCTCTTTCTGTGTCGATACTC 59.359 38.462 13.73 0.00 0.00 2.59
3060 3317 4.456280 TCTGTGTCGATACTCATGCTTT 57.544 40.909 13.73 0.00 0.00 3.51
3090 3347 5.462034 CATACACTGCTGAAAACTCTAGC 57.538 43.478 0.00 0.00 37.93 3.42
3092 3349 4.078639 ACACTGCTGAAAACTCTAGCTT 57.921 40.909 0.00 0.00 38.25 3.74
3106 3363 6.500589 ACTCTAGCTTTATTCCTGCCATAA 57.499 37.500 0.00 0.00 0.00 1.90
3132 3389 3.546271 CGCATGATCTTGTGAAATGCTTG 59.454 43.478 15.18 0.00 40.85 4.01
3142 3400 7.532571 TCTTGTGAAATGCTTGATGTATTCTG 58.467 34.615 0.00 0.00 30.66 3.02
3152 3410 6.026513 GCTTGATGTATTCTGTTTTCTGCTC 58.973 40.000 0.00 0.00 0.00 4.26
3169 3427 1.484240 GCTCACCTTAGGCTGAGATGT 59.516 52.381 24.58 0.00 34.88 3.06
3180 3438 3.710165 AGGCTGAGATGTTCATCTGATGA 59.290 43.478 16.06 16.06 34.68 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.634448 TGGAAGGAAAAGCATGAAAACGA 59.366 39.130 0.00 0.00 0.00 3.85
14 15 6.479990 GTGAAAAATTGAGGTGGAAGGAAAAG 59.520 38.462 0.00 0.00 0.00 2.27
16 17 5.423610 TGTGAAAAATTGAGGTGGAAGGAAA 59.576 36.000 0.00 0.00 0.00 3.13
38 39 2.417924 CCATCTTAGCAAGCTCTCGTGT 60.418 50.000 0.00 0.00 0.00 4.49
39 40 2.200067 CCATCTTAGCAAGCTCTCGTG 58.800 52.381 0.00 0.00 0.00 4.35
52 54 1.471287 CGACGACACCTCACCATCTTA 59.529 52.381 0.00 0.00 0.00 2.10
65 67 2.163818 AAAGGCAAAGATCGACGACA 57.836 45.000 0.00 0.00 0.00 4.35
69 71 3.253432 ACTCCAAAAAGGCAAAGATCGAC 59.747 43.478 0.00 0.00 37.29 4.20
77 79 1.143277 TCGGGTACTCCAAAAAGGCAA 59.857 47.619 0.00 0.00 37.29 4.52
94 97 2.352342 GGCCAAAAATCAATGCAATCGG 59.648 45.455 0.00 0.00 0.00 4.18
95 98 3.264104 AGGCCAAAAATCAATGCAATCG 58.736 40.909 5.01 0.00 0.00 3.34
102 105 4.999469 AAGGGAAAGGCCAAAAATCAAT 57.001 36.364 5.01 0.00 38.95 2.57
104 107 5.341169 AGATAAGGGAAAGGCCAAAAATCA 58.659 37.500 5.01 0.00 38.95 2.57
107 110 5.899278 ACTAGATAAGGGAAAGGCCAAAAA 58.101 37.500 5.01 0.00 38.95 1.94
119 122 5.422650 GCCTTAGGTGGATACTAGATAAGGG 59.577 48.000 0.00 0.00 38.69 3.95
120 123 6.153680 CAGCCTTAGGTGGATACTAGATAAGG 59.846 46.154 0.00 0.00 40.38 2.69
121 124 6.350612 GCAGCCTTAGGTGGATACTAGATAAG 60.351 46.154 0.00 0.00 41.94 1.73
122 125 5.480772 GCAGCCTTAGGTGGATACTAGATAA 59.519 44.000 0.00 0.00 41.94 1.75
127 131 3.040655 TGCAGCCTTAGGTGGATACTA 57.959 47.619 0.00 0.00 41.94 1.82
151 155 1.235948 AACTCGCTCGGACTCGACTT 61.236 55.000 0.00 0.00 40.88 3.01
196 200 7.971168 TCGCTCAGTTTGAAAACTCAAATTTTA 59.029 29.630 5.46 0.00 45.65 1.52
230 234 6.679327 AGAGTCACTTTTTACAGTTCAACC 57.321 37.500 0.00 0.00 0.00 3.77
260 264 7.704271 AGAGATCAACTCGATATCGTTACAAA 58.296 34.615 23.61 7.93 45.34 2.83
267 271 5.680893 TCGAAAGAGATCAACTCGATATCG 58.319 41.667 19.14 19.14 45.34 2.92
331 336 6.811665 TGTTGTGTTCTGGTCTATCTTATTCG 59.188 38.462 0.00 0.00 0.00 3.34
332 337 8.723942 ATGTTGTGTTCTGGTCTATCTTATTC 57.276 34.615 0.00 0.00 0.00 1.75
335 340 9.031537 TCTTATGTTGTGTTCTGGTCTATCTTA 57.968 33.333 0.00 0.00 0.00 2.10
399 404 6.486056 AGACAGAGTGGATACTAGTCTTCAA 58.514 40.000 0.00 0.00 43.88 2.69
412 417 6.042093 AGACAAGTAATTCAAGACAGAGTGGA 59.958 38.462 0.00 0.00 0.00 4.02
413 418 6.226787 AGACAAGTAATTCAAGACAGAGTGG 58.773 40.000 0.00 0.00 0.00 4.00
450 457 7.108841 TCTTTTGCTAGACACTATCCGTATT 57.891 36.000 0.00 0.00 0.00 1.89
471 478 9.545105 CTCTCTTGCTAGTTCATTTATGATCTT 57.455 33.333 8.22 0.00 37.80 2.40
497 504 4.464112 AGAGCAGACGCGTTTTATTTTTC 58.536 39.130 15.53 3.91 45.49 2.29
503 510 2.143008 TTGAGAGCAGACGCGTTTTA 57.857 45.000 15.53 0.00 45.49 1.52
504 511 1.003866 GTTTGAGAGCAGACGCGTTTT 60.004 47.619 15.53 1.39 45.49 2.43
505 512 0.582005 GTTTGAGAGCAGACGCGTTT 59.418 50.000 15.53 4.14 45.49 3.60
506 513 0.249489 AGTTTGAGAGCAGACGCGTT 60.249 50.000 15.53 0.00 45.49 4.84
507 514 0.249489 AAGTTTGAGAGCAGACGCGT 60.249 50.000 13.85 13.85 45.49 6.01
508 515 0.861837 AAAGTTTGAGAGCAGACGCG 59.138 50.000 3.53 3.53 45.49 6.01
511 518 3.206150 TGACCAAAGTTTGAGAGCAGAC 58.794 45.455 17.33 0.65 0.00 3.51
512 519 3.134623 TCTGACCAAAGTTTGAGAGCAGA 59.865 43.478 17.33 17.54 0.00 4.26
513 520 3.470709 TCTGACCAAAGTTTGAGAGCAG 58.529 45.455 17.33 15.86 0.00 4.24
517 524 7.773224 TCTTGTTATTCTGACCAAAGTTTGAGA 59.227 33.333 17.33 9.06 0.00 3.27
555 562 5.374071 AGTCAACTAATTTGAAACGGAGGT 58.626 37.500 0.00 0.00 46.09 3.85
556 563 5.389516 CGAGTCAACTAATTTGAAACGGAGG 60.390 44.000 0.00 0.00 46.09 4.30
561 573 8.797266 AAAATCCGAGTCAACTAATTTGAAAC 57.203 30.769 0.00 0.00 46.09 2.78
564 576 8.391075 AGAAAAATCCGAGTCAACTAATTTGA 57.609 30.769 0.00 0.00 42.26 2.69
573 585 7.177832 TGGTATCTAGAAAAATCCGAGTCAA 57.822 36.000 0.00 0.00 0.00 3.18
592 604 9.745880 CTAAAACGTGTCTAGATACATTGGTAT 57.254 33.333 18.39 5.17 42.86 2.73
593 605 8.742777 ACTAAAACGTGTCTAGATACATTGGTA 58.257 33.333 18.39 6.28 0.00 3.25
594 606 7.544566 CACTAAAACGTGTCTAGATACATTGGT 59.455 37.037 18.39 13.92 0.00 3.67
595 607 7.544566 ACACTAAAACGTGTCTAGATACATTGG 59.455 37.037 18.39 13.41 44.32 3.16
596 608 8.462143 ACACTAAAACGTGTCTAGATACATTG 57.538 34.615 18.39 6.05 44.32 2.82
598 610 9.784680 CTAACACTAAAACGTGTCTAGATACAT 57.215 33.333 18.39 1.14 46.71 2.29
599 611 9.002600 TCTAACACTAAAACGTGTCTAGATACA 57.997 33.333 18.39 0.27 46.71 2.29
600 612 9.488124 CTCTAACACTAAAACGTGTCTAGATAC 57.512 37.037 9.46 9.46 46.71 2.24
601 613 9.440773 TCTCTAACACTAAAACGTGTCTAGATA 57.559 33.333 0.00 0.00 46.71 1.98
602 614 8.235905 GTCTCTAACACTAAAACGTGTCTAGAT 58.764 37.037 0.00 0.00 46.71 1.98
603 615 7.227314 TGTCTCTAACACTAAAACGTGTCTAGA 59.773 37.037 0.00 0.00 46.71 2.43
604 616 7.358066 TGTCTCTAACACTAAAACGTGTCTAG 58.642 38.462 0.00 0.00 46.71 2.43
605 617 7.263100 TGTCTCTAACACTAAAACGTGTCTA 57.737 36.000 0.00 0.00 46.71 2.59
606 618 6.140303 TGTCTCTAACACTAAAACGTGTCT 57.860 37.500 0.00 0.00 46.71 3.41
607 619 6.089150 GGATGTCTCTAACACTAAAACGTGTC 59.911 42.308 0.00 0.00 46.71 3.67
609 621 5.060569 CGGATGTCTCTAACACTAAAACGTG 59.939 44.000 0.00 0.00 41.75 4.49
610 622 5.159209 CGGATGTCTCTAACACTAAAACGT 58.841 41.667 0.00 0.00 41.75 3.99
611 623 5.159209 ACGGATGTCTCTAACACTAAAACG 58.841 41.667 0.00 0.00 41.75 3.60
612 624 8.699283 AATACGGATGTCTCTAACACTAAAAC 57.301 34.615 0.00 0.00 41.75 2.43
615 627 9.399797 TCTAAATACGGATGTCTCTAACACTAA 57.600 33.333 0.00 0.00 41.75 2.24
616 628 8.834465 GTCTAAATACGGATGTCTCTAACACTA 58.166 37.037 0.00 0.00 41.75 2.74
617 629 7.338703 TGTCTAAATACGGATGTCTCTAACACT 59.661 37.037 0.00 0.00 41.75 3.55
618 630 7.431668 GTGTCTAAATACGGATGTCTCTAACAC 59.568 40.741 0.00 0.00 41.75 3.32
626 638 6.399204 AAAACGTGTCTAAATACGGATGTC 57.601 37.500 0.00 0.00 43.47 3.06
632 644 9.117145 TCTAACACTAAAACGTGTCTAAATACG 57.883 33.333 0.00 0.00 46.71 3.06
642 654 7.946043 ACGAATGTATCTAACACTAAAACGTG 58.054 34.615 0.00 0.00 42.09 4.49
643 655 9.793252 ATACGAATGTATCTAACACTAAAACGT 57.207 29.630 0.00 0.00 42.09 3.99
659 671 9.878667 TCTTAAATTTGTCCAGATACGAATGTA 57.121 29.630 0.00 0.00 34.38 2.29
660 672 8.665685 GTCTTAAATTTGTCCAGATACGAATGT 58.334 33.333 0.00 0.00 34.38 2.71
661 673 8.664798 TGTCTTAAATTTGTCCAGATACGAATG 58.335 33.333 0.00 0.00 34.38 2.67
662 674 8.786826 TGTCTTAAATTTGTCCAGATACGAAT 57.213 30.769 0.00 0.00 35.40 3.34
663 675 8.500773 GTTGTCTTAAATTTGTCCAGATACGAA 58.499 33.333 0.00 0.00 0.00 3.85
664 676 7.876068 AGTTGTCTTAAATTTGTCCAGATACGA 59.124 33.333 0.00 0.00 0.00 3.43
665 677 8.029642 AGTTGTCTTAAATTTGTCCAGATACG 57.970 34.615 0.00 0.00 0.00 3.06
680 692 9.793259 ATCTTGGTCTCAAATTAGTTGTCTTAA 57.207 29.630 0.00 0.00 38.47 1.85
702 714 9.554053 ACTAGTATTGGAGGCATCTATTATCTT 57.446 33.333 0.00 0.00 0.00 2.40
765 893 7.147880 GGCTCCCTTAATTTAGCTCGATATAGA 60.148 40.741 0.00 0.00 35.30 1.98
767 895 6.439375 TGGCTCCCTTAATTTAGCTCGATATA 59.561 38.462 0.00 0.00 35.30 0.86
773 901 3.879892 CACTGGCTCCCTTAATTTAGCTC 59.120 47.826 0.00 0.00 35.30 4.09
809 937 6.780706 TTTAGGTTGATTGAGAAACGAGAC 57.219 37.500 0.00 0.00 0.00 3.36
810 938 9.496873 TTTATTTAGGTTGATTGAGAAACGAGA 57.503 29.630 0.00 0.00 0.00 4.04
857 985 7.597743 GGTTCGACTTACAGATTGACTAAGAAA 59.402 37.037 0.00 0.00 0.00 2.52
860 988 6.387465 TGGTTCGACTTACAGATTGACTAAG 58.613 40.000 0.00 0.00 0.00 2.18
862 990 5.970317 TGGTTCGACTTACAGATTGACTA 57.030 39.130 0.00 0.00 0.00 2.59
872 1000 4.925646 ACTCCGTATTTTGGTTCGACTTAC 59.074 41.667 0.00 0.00 0.00 2.34
873 1001 5.138125 ACTCCGTATTTTGGTTCGACTTA 57.862 39.130 0.00 0.00 0.00 2.24
876 1004 4.236935 TGTACTCCGTATTTTGGTTCGAC 58.763 43.478 0.00 0.00 0.00 4.20
891 1019 2.667724 CGAGGTTCAGACGTTGTACTCC 60.668 54.545 0.00 0.00 0.00 3.85
892 1020 2.225019 TCGAGGTTCAGACGTTGTACTC 59.775 50.000 0.00 0.00 0.00 2.59
893 1021 2.224606 TCGAGGTTCAGACGTTGTACT 58.775 47.619 0.00 0.00 0.00 2.73
894 1022 2.693797 TCGAGGTTCAGACGTTGTAC 57.306 50.000 0.00 0.00 0.00 2.90
895 1023 2.620115 AGTTCGAGGTTCAGACGTTGTA 59.380 45.455 0.00 0.00 0.00 2.41
896 1024 1.407979 AGTTCGAGGTTCAGACGTTGT 59.592 47.619 0.00 0.00 0.00 3.32
897 1025 2.135664 AGTTCGAGGTTCAGACGTTG 57.864 50.000 0.00 0.00 0.00 4.10
907 1035 2.213499 CTGCAACAAGAAGTTCGAGGT 58.787 47.619 0.00 0.00 38.74 3.85
911 1039 0.947244 AGGCTGCAACAAGAAGTTCG 59.053 50.000 0.50 0.00 38.74 3.95
918 1046 2.417978 TTGGACAGGCTGCAACAAG 58.582 52.632 15.89 0.00 0.00 3.16
1017 1175 2.023791 GGGGAGAGAGAAGGTAAGGAGT 60.024 54.545 0.00 0.00 0.00 3.85
1032 1190 2.376842 GGATGGGGAAGGGGGAGA 59.623 66.667 0.00 0.00 0.00 3.71
1033 1191 2.778717 GGGATGGGGAAGGGGGAG 60.779 72.222 0.00 0.00 0.00 4.30
1034 1192 4.465410 GGGGATGGGGAAGGGGGA 62.465 72.222 0.00 0.00 0.00 4.81
1615 1785 1.218047 GCCGACTGGTGATACTGCA 59.782 57.895 0.00 0.00 37.67 4.41
1785 1955 3.470888 CATCGAGAAGGGGGCGGT 61.471 66.667 0.00 0.00 0.00 5.68
1893 2063 4.101448 AGCCACATCACCTCGCCC 62.101 66.667 0.00 0.00 0.00 6.13
1948 2118 9.214957 CAACGCCACAAGAATTATATCCTAATA 57.785 33.333 0.00 0.00 0.00 0.98
1994 2164 5.295152 ACTCAACCTGTTACCTTACTTTCG 58.705 41.667 0.00 0.00 0.00 3.46
2149 2319 2.766313 GTTGACAAAATTGCCCTTCCC 58.234 47.619 0.00 0.00 0.00 3.97
2253 2424 7.821595 CAAAATGCAATTGTGTGATATCACT 57.178 32.000 30.67 12.59 41.45 3.41
2336 2509 4.980434 GCATGGTTGAACAGCATATCAATC 59.020 41.667 0.00 2.42 41.97 2.67
2359 2532 5.129485 TGAAATTCTCTAGGAAGTAGGCAGG 59.871 44.000 0.00 0.00 37.36 4.85
2386 2559 5.877012 GGATCATACTGTTGACACAATGACT 59.123 40.000 0.00 0.00 30.36 3.41
2387 2560 5.065218 GGGATCATACTGTTGACACAATGAC 59.935 44.000 0.00 2.78 30.36 3.06
2414 2587 3.374058 GGTACATTGCTTGCAGTTCGTAT 59.626 43.478 0.00 0.00 0.00 3.06
2415 2588 2.739913 GGTACATTGCTTGCAGTTCGTA 59.260 45.455 0.00 0.00 0.00 3.43
2417 2590 1.535028 TGGTACATTGCTTGCAGTTCG 59.465 47.619 0.00 0.00 0.00 3.95
2435 2650 5.969423 AGCATAATTGGTTGATGAGTTTGG 58.031 37.500 0.00 0.00 0.00 3.28
2478 2694 3.945285 CCAAAGTTCTTACCACGGCATAT 59.055 43.478 0.00 0.00 0.00 1.78
2483 2699 2.292292 CCAACCAAAGTTCTTACCACGG 59.708 50.000 0.00 0.00 32.45 4.94
2489 2705 3.306472 AGGCACCAACCAAAGTTCTTA 57.694 42.857 0.00 0.00 32.45 2.10
2557 2773 9.660180 CTAAGAAAAGCTCACCTAATAAGACTT 57.340 33.333 0.00 0.00 0.00 3.01
2558 2774 8.817876 ACTAAGAAAAGCTCACCTAATAAGACT 58.182 33.333 0.00 0.00 0.00 3.24
2586 2802 2.300152 TGAACACTAGCAACAGAGGGAG 59.700 50.000 0.00 0.00 0.00 4.30
2587 2803 2.325484 TGAACACTAGCAACAGAGGGA 58.675 47.619 0.00 0.00 0.00 4.20
2588 2804 2.808543 GTTGAACACTAGCAACAGAGGG 59.191 50.000 0.00 0.00 42.86 4.30
2589 2805 2.476619 CGTTGAACACTAGCAACAGAGG 59.523 50.000 10.36 0.00 43.35 3.69
2590 2806 2.476619 CCGTTGAACACTAGCAACAGAG 59.523 50.000 10.36 0.00 43.35 3.35
2591 2807 2.101750 TCCGTTGAACACTAGCAACAGA 59.898 45.455 10.36 3.30 43.35 3.41
2592 2808 2.479837 TCCGTTGAACACTAGCAACAG 58.520 47.619 10.36 1.34 43.35 3.16
2593 2809 2.605837 TCCGTTGAACACTAGCAACA 57.394 45.000 10.36 0.00 43.35 3.33
2594 2810 2.806244 ACATCCGTTGAACACTAGCAAC 59.194 45.455 0.00 0.00 40.62 4.17
2595 2811 3.120321 ACATCCGTTGAACACTAGCAA 57.880 42.857 0.00 0.00 0.00 3.91
2596 2812 2.831685 ACATCCGTTGAACACTAGCA 57.168 45.000 0.00 0.00 0.00 3.49
2597 2813 7.537991 GTCTATATACATCCGTTGAACACTAGC 59.462 40.741 0.00 0.00 0.00 3.42
2598 2814 8.565416 TGTCTATATACATCCGTTGAACACTAG 58.435 37.037 0.00 0.00 0.00 2.57
2599 2815 8.454570 TGTCTATATACATCCGTTGAACACTA 57.545 34.615 0.00 0.00 0.00 2.74
2600 2816 7.342769 TGTCTATATACATCCGTTGAACACT 57.657 36.000 0.00 0.00 0.00 3.55
2601 2817 9.856488 ATATGTCTATATACATCCGTTGAACAC 57.144 33.333 7.00 0.00 40.52 3.32
2628 2844 8.677300 GCAAAATGAGTGGATCTACATTCTAAA 58.323 33.333 12.16 0.00 32.84 1.85
2629 2845 8.049117 AGCAAAATGAGTGGATCTACATTCTAA 58.951 33.333 12.16 0.00 32.84 2.10
2630 2846 7.568349 AGCAAAATGAGTGGATCTACATTCTA 58.432 34.615 12.16 0.00 32.84 2.10
2631 2847 6.421485 AGCAAAATGAGTGGATCTACATTCT 58.579 36.000 12.16 0.00 32.84 2.40
2632 2848 6.238593 GGAGCAAAATGAGTGGATCTACATTC 60.239 42.308 12.16 1.87 32.84 2.67
2633 2849 5.591877 GGAGCAAAATGAGTGGATCTACATT 59.408 40.000 12.16 0.70 34.99 2.71
2634 2850 5.128919 GGAGCAAAATGAGTGGATCTACAT 58.871 41.667 12.16 0.00 0.00 2.29
2635 2851 4.517285 GGAGCAAAATGAGTGGATCTACA 58.483 43.478 12.16 0.00 0.00 2.74
2636 2852 3.557595 CGGAGCAAAATGAGTGGATCTAC 59.442 47.826 0.00 0.00 0.00 2.59
2637 2853 3.197766 ACGGAGCAAAATGAGTGGATCTA 59.802 43.478 0.00 0.00 0.00 1.98
2638 2854 2.026822 ACGGAGCAAAATGAGTGGATCT 60.027 45.455 0.00 0.00 0.00 2.75
2639 2855 2.359900 ACGGAGCAAAATGAGTGGATC 58.640 47.619 0.00 0.00 0.00 3.36
2640 2856 2.496899 ACGGAGCAAAATGAGTGGAT 57.503 45.000 0.00 0.00 0.00 3.41
2641 2857 3.270027 CATACGGAGCAAAATGAGTGGA 58.730 45.455 0.00 0.00 0.00 4.02
2642 2858 3.009723 ACATACGGAGCAAAATGAGTGG 58.990 45.455 0.00 0.00 0.00 4.00
2643 2859 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2644 2860 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2645 2861 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2646 2862 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
2647 2863 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
2648 2864 3.454375 CGGACTACATACGGAGCAAAAT 58.546 45.455 0.00 0.00 0.00 1.82
2649 2865 2.883574 CGGACTACATACGGAGCAAAA 58.116 47.619 0.00 0.00 0.00 2.44
2650 2866 1.470285 GCGGACTACATACGGAGCAAA 60.470 52.381 0.00 0.00 0.00 3.68
2651 2867 0.101759 GCGGACTACATACGGAGCAA 59.898 55.000 0.00 0.00 0.00 3.91
2652 2868 1.033202 TGCGGACTACATACGGAGCA 61.033 55.000 0.00 0.00 0.00 4.26
2653 2869 0.314302 ATGCGGACTACATACGGAGC 59.686 55.000 0.00 0.00 0.00 4.70
2654 2870 2.794910 CAAATGCGGACTACATACGGAG 59.205 50.000 0.00 0.00 0.00 4.63
2655 2871 2.427812 TCAAATGCGGACTACATACGGA 59.572 45.455 0.00 0.00 0.00 4.69
2656 2872 2.816689 TCAAATGCGGACTACATACGG 58.183 47.619 0.00 0.00 0.00 4.02
2657 2873 4.745125 AGATTCAAATGCGGACTACATACG 59.255 41.667 0.00 0.00 0.00 3.06
2658 2874 5.177696 GGAGATTCAAATGCGGACTACATAC 59.822 44.000 0.00 0.00 0.00 2.39
2659 2875 5.163353 TGGAGATTCAAATGCGGACTACATA 60.163 40.000 0.00 0.00 0.00 2.29
2660 2876 4.130118 GGAGATTCAAATGCGGACTACAT 58.870 43.478 0.00 0.00 0.00 2.29
2661 2877 3.055458 TGGAGATTCAAATGCGGACTACA 60.055 43.478 0.00 0.00 0.00 2.74
2662 2878 3.531538 TGGAGATTCAAATGCGGACTAC 58.468 45.455 0.00 0.00 0.00 2.73
2663 2879 3.904800 TGGAGATTCAAATGCGGACTA 57.095 42.857 0.00 0.00 0.00 2.59
2664 2880 2.787473 TGGAGATTCAAATGCGGACT 57.213 45.000 0.00 0.00 0.00 3.85
2665 2881 3.848272 TTTGGAGATTCAAATGCGGAC 57.152 42.857 0.00 0.00 32.39 4.79
2666 2882 4.522405 TCTTTTTGGAGATTCAAATGCGGA 59.478 37.500 0.00 0.00 36.63 5.54
2667 2883 4.622740 GTCTTTTTGGAGATTCAAATGCGG 59.377 41.667 0.00 0.00 36.63 5.69
2668 2884 5.464168 AGTCTTTTTGGAGATTCAAATGCG 58.536 37.500 0.00 0.00 36.63 4.73
2669 2885 8.992835 ATAAGTCTTTTTGGAGATTCAAATGC 57.007 30.769 0.00 0.00 36.63 3.56
2673 2889 9.449719 GGAGTATAAGTCTTTTTGGAGATTCAA 57.550 33.333 0.00 0.00 0.00 2.69
2674 2890 8.047310 GGGAGTATAAGTCTTTTTGGAGATTCA 58.953 37.037 0.00 0.00 0.00 2.57
2675 2891 8.268605 AGGGAGTATAAGTCTTTTTGGAGATTC 58.731 37.037 0.00 0.00 0.00 2.52
2676 2892 8.164057 AGGGAGTATAAGTCTTTTTGGAGATT 57.836 34.615 0.00 0.00 0.00 2.40
2677 2893 7.403231 TGAGGGAGTATAAGTCTTTTTGGAGAT 59.597 37.037 0.00 0.00 0.00 2.75
2678 2894 6.729100 TGAGGGAGTATAAGTCTTTTTGGAGA 59.271 38.462 0.00 0.00 0.00 3.71
2679 2895 6.947464 TGAGGGAGTATAAGTCTTTTTGGAG 58.053 40.000 0.00 0.00 0.00 3.86
2680 2896 6.945636 TGAGGGAGTATAAGTCTTTTTGGA 57.054 37.500 0.00 0.00 0.00 3.53
2681 2897 9.331282 CTATTGAGGGAGTATAAGTCTTTTTGG 57.669 37.037 0.00 0.00 0.00 3.28
2682 2898 9.892130 ACTATTGAGGGAGTATAAGTCTTTTTG 57.108 33.333 0.00 0.00 0.00 2.44
2684 2900 9.892130 CAACTATTGAGGGAGTATAAGTCTTTT 57.108 33.333 0.00 0.00 0.00 2.27
2685 2901 9.047947 ACAACTATTGAGGGAGTATAAGTCTTT 57.952 33.333 0.00 0.00 0.00 2.52
2686 2902 8.611051 ACAACTATTGAGGGAGTATAAGTCTT 57.389 34.615 0.00 0.00 0.00 3.01
2687 2903 7.839705 TGACAACTATTGAGGGAGTATAAGTCT 59.160 37.037 0.00 0.00 0.00 3.24
2688 2904 8.008513 TGACAACTATTGAGGGAGTATAAGTC 57.991 38.462 0.00 0.00 0.00 3.01
2689 2905 7.973048 TGACAACTATTGAGGGAGTATAAGT 57.027 36.000 0.00 0.00 0.00 2.24
2690 2906 8.642432 TGATGACAACTATTGAGGGAGTATAAG 58.358 37.037 0.00 0.00 0.00 1.73
2691 2907 8.547481 TGATGACAACTATTGAGGGAGTATAA 57.453 34.615 0.00 0.00 0.00 0.98
2692 2908 8.547481 TTGATGACAACTATTGAGGGAGTATA 57.453 34.615 0.00 0.00 0.00 1.47
2693 2909 7.437713 TTGATGACAACTATTGAGGGAGTAT 57.562 36.000 0.00 0.00 0.00 2.12
2694 2910 6.867519 TTGATGACAACTATTGAGGGAGTA 57.132 37.500 0.00 0.00 0.00 2.59
2695 2911 5.762179 TTGATGACAACTATTGAGGGAGT 57.238 39.130 0.00 0.00 0.00 3.85
2696 2912 7.415989 CCATTTTGATGACAACTATTGAGGGAG 60.416 40.741 0.00 0.00 35.63 4.30
2697 2913 6.377996 CCATTTTGATGACAACTATTGAGGGA 59.622 38.462 0.00 0.00 35.63 4.20
2698 2914 6.377996 TCCATTTTGATGACAACTATTGAGGG 59.622 38.462 0.00 0.00 35.63 4.30
2699 2915 7.395190 TCCATTTTGATGACAACTATTGAGG 57.605 36.000 0.00 0.00 35.63 3.86
2700 2916 8.680001 TCATCCATTTTGATGACAACTATTGAG 58.320 33.333 0.00 0.00 44.65 3.02
2701 2917 8.578448 TCATCCATTTTGATGACAACTATTGA 57.422 30.769 0.00 0.00 44.65 2.57
2712 2928 6.646267 ACATCCCTTTTCATCCATTTTGATG 58.354 36.000 0.00 0.00 42.84 3.07
2713 2929 6.879367 ACATCCCTTTTCATCCATTTTGAT 57.121 33.333 0.00 0.00 0.00 2.57
2714 2930 7.840716 AGATACATCCCTTTTCATCCATTTTGA 59.159 33.333 0.00 0.00 0.00 2.69
2715 2931 8.015185 AGATACATCCCTTTTCATCCATTTTG 57.985 34.615 0.00 0.00 0.00 2.44
2716 2932 9.359653 CTAGATACATCCCTTTTCATCCATTTT 57.640 33.333 0.00 0.00 0.00 1.82
2717 2933 8.727149 TCTAGATACATCCCTTTTCATCCATTT 58.273 33.333 0.00 0.00 0.00 2.32
2718 2934 8.280258 TCTAGATACATCCCTTTTCATCCATT 57.720 34.615 0.00 0.00 0.00 3.16
2719 2935 7.878621 TCTAGATACATCCCTTTTCATCCAT 57.121 36.000 0.00 0.00 0.00 3.41
2720 2936 7.348274 AGTTCTAGATACATCCCTTTTCATCCA 59.652 37.037 0.00 0.00 0.00 3.41
2721 2937 7.740805 AGTTCTAGATACATCCCTTTTCATCC 58.259 38.462 0.00 0.00 0.00 3.51
2729 2945 9.364653 ACGTATTTTAGTTCTAGATACATCCCT 57.635 33.333 0.00 0.00 0.00 4.20
2730 2946 9.623350 GACGTATTTTAGTTCTAGATACATCCC 57.377 37.037 0.00 0.00 0.00 3.85
2744 2960 9.796180 AGGAGATGTATCTAGACGTATTTTAGT 57.204 33.333 0.00 0.00 37.25 2.24
2751 2967 9.228949 GGATTAAAGGAGATGTATCTAGACGTA 57.771 37.037 0.00 0.00 37.25 3.57
2752 2968 7.724506 TGGATTAAAGGAGATGTATCTAGACGT 59.275 37.037 0.00 0.00 37.25 4.34
2753 2969 8.112016 TGGATTAAAGGAGATGTATCTAGACG 57.888 38.462 0.00 0.00 37.25 4.18
2761 2977 9.919416 TCATCAAAATGGATTAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
2762 2978 8.689972 GTCATCAAAATGGATTAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
2763 2979 8.689061 TGTCATCAAAATGGATTAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
2764 2980 8.827832 TGTCATCAAAATGGATTAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
2765 2981 8.648698 TTGTCATCAAAATGGATTAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
2766 2982 8.526147 ACTTGTCATCAAAATGGATTAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
2767 2983 8.421249 ACTTGTCATCAAAATGGATTAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
2773 2989 7.975616 CGGAAATACTTGTCATCAAAATGGATT 59.024 33.333 0.00 0.00 33.42 3.01
2774 2990 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
2775 2991 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2776 2992 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2777 2993 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2778 2994 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2779 2995 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2780 2996 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2781 2997 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2782 2998 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2783 2999 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2784 3000 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2785 3001 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2786 3002 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2787 3003 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2788 3004 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2789 3005 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2790 3006 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2791 3007 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2792 3008 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2793 3009 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2794 3010 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2795 3011 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2796 3012 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
2797 3013 1.612463 CTAAATACTCCCTCCGTCCGG 59.388 57.143 0.00 0.00 0.00 5.14
2798 3014 2.579873 TCTAAATACTCCCTCCGTCCG 58.420 52.381 0.00 0.00 0.00 4.79
2799 3015 4.691175 GTTTCTAAATACTCCCTCCGTCC 58.309 47.826 0.00 0.00 0.00 4.79
2800 3016 4.357996 CGTTTCTAAATACTCCCTCCGTC 58.642 47.826 0.00 0.00 0.00 4.79
2801 3017 3.131755 CCGTTTCTAAATACTCCCTCCGT 59.868 47.826 0.00 0.00 0.00 4.69
2802 3018 3.382546 TCCGTTTCTAAATACTCCCTCCG 59.617 47.826 0.00 0.00 0.00 4.63
2803 3019 4.202233 CCTCCGTTTCTAAATACTCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
2804 3020 4.202233 CCCTCCGTTTCTAAATACTCCCTC 60.202 50.000 0.00 0.00 0.00 4.30
2805 3021 3.710165 CCCTCCGTTTCTAAATACTCCCT 59.290 47.826 0.00 0.00 0.00 4.20
2806 3022 3.708121 TCCCTCCGTTTCTAAATACTCCC 59.292 47.826 0.00 0.00 0.00 4.30
2807 3023 4.405036 ACTCCCTCCGTTTCTAAATACTCC 59.595 45.833 0.00 0.00 0.00 3.85
2808 3024 5.595257 ACTCCCTCCGTTTCTAAATACTC 57.405 43.478 0.00 0.00 0.00 2.59
2809 3025 6.193504 AGTACTCCCTCCGTTTCTAAATACT 58.806 40.000 0.00 0.00 0.00 2.12
2810 3026 6.462552 AGTACTCCCTCCGTTTCTAAATAC 57.537 41.667 0.00 0.00 0.00 1.89
2811 3027 6.894103 AGAAGTACTCCCTCCGTTTCTAAATA 59.106 38.462 0.00 0.00 0.00 1.40
2812 3028 5.720520 AGAAGTACTCCCTCCGTTTCTAAAT 59.279 40.000 0.00 0.00 0.00 1.40
2813 3029 5.082425 AGAAGTACTCCCTCCGTTTCTAAA 58.918 41.667 0.00 0.00 0.00 1.85
2814 3030 4.670765 AGAAGTACTCCCTCCGTTTCTAA 58.329 43.478 0.00 0.00 0.00 2.10
2815 3031 4.018597 AGAGAAGTACTCCCTCCGTTTCTA 60.019 45.833 16.95 0.00 45.96 2.10
2816 3032 3.090790 GAGAAGTACTCCCTCCGTTTCT 58.909 50.000 12.00 1.67 39.53 2.52
2817 3033 3.090790 AGAGAAGTACTCCCTCCGTTTC 58.909 50.000 16.95 0.61 45.96 2.78
2818 3034 3.172471 AGAGAAGTACTCCCTCCGTTT 57.828 47.619 16.95 1.96 45.96 3.60
2819 3035 2.903375 AGAGAAGTACTCCCTCCGTT 57.097 50.000 16.95 2.23 45.96 4.44
2820 3036 2.575279 TGTAGAGAAGTACTCCCTCCGT 59.425 50.000 16.95 6.83 45.96 4.69
2821 3037 2.944349 GTGTAGAGAAGTACTCCCTCCG 59.056 54.545 16.95 0.00 45.96 4.63
2822 3038 4.239428 AGTGTAGAGAAGTACTCCCTCC 57.761 50.000 16.95 7.61 45.96 4.30
2823 3039 5.254901 TCAAGTGTAGAGAAGTACTCCCTC 58.745 45.833 14.19 14.19 45.96 4.30
2824 3040 5.258216 TCAAGTGTAGAGAAGTACTCCCT 57.742 43.478 0.00 0.00 45.96 4.20
2825 3041 5.979288 TTCAAGTGTAGAGAAGTACTCCC 57.021 43.478 0.00 0.00 45.96 4.30
2879 3099 2.165167 CAGTCATTGTGCCACCAATCT 58.835 47.619 0.00 0.00 32.81 2.40
2926 3146 9.378551 CTACACCTAAACATAGCAATCAGTTTA 57.621 33.333 0.00 0.00 35.90 2.01
2981 3201 5.105797 TGGTGCTGTTTATCTATTTTGCTGG 60.106 40.000 0.00 0.00 0.00 4.85
2982 3202 5.953183 TGGTGCTGTTTATCTATTTTGCTG 58.047 37.500 0.00 0.00 0.00 4.41
2983 3203 6.209391 AGTTGGTGCTGTTTATCTATTTTGCT 59.791 34.615 0.00 0.00 0.00 3.91
2984 3204 6.389906 AGTTGGTGCTGTTTATCTATTTTGC 58.610 36.000 0.00 0.00 0.00 3.68
2985 3205 8.299570 AGAAGTTGGTGCTGTTTATCTATTTTG 58.700 33.333 0.00 0.00 0.00 2.44
2986 3206 8.409358 AGAAGTTGGTGCTGTTTATCTATTTT 57.591 30.769 0.00 0.00 0.00 1.82
2987 3207 8.409358 AAGAAGTTGGTGCTGTTTATCTATTT 57.591 30.769 0.00 0.00 0.00 1.40
2988 3208 8.299570 CAAAGAAGTTGGTGCTGTTTATCTATT 58.700 33.333 0.00 0.00 33.18 1.73
2989 3209 7.665559 TCAAAGAAGTTGGTGCTGTTTATCTAT 59.334 33.333 0.00 0.00 37.85 1.98
2990 3210 6.995686 TCAAAGAAGTTGGTGCTGTTTATCTA 59.004 34.615 0.00 0.00 37.85 1.98
2991 3211 5.827797 TCAAAGAAGTTGGTGCTGTTTATCT 59.172 36.000 0.00 0.00 37.85 1.98
2992 3212 6.072112 TCAAAGAAGTTGGTGCTGTTTATC 57.928 37.500 0.00 0.00 37.85 1.75
2993 3213 6.273071 GTTCAAAGAAGTTGGTGCTGTTTAT 58.727 36.000 0.00 0.00 37.85 1.40
2994 3214 5.393678 GGTTCAAAGAAGTTGGTGCTGTTTA 60.394 40.000 0.00 0.00 37.85 2.01
2995 3215 4.494484 GTTCAAAGAAGTTGGTGCTGTTT 58.506 39.130 0.00 0.00 37.85 2.83
2996 3216 3.119137 GGTTCAAAGAAGTTGGTGCTGTT 60.119 43.478 0.00 0.00 37.85 3.16
2997 3217 2.427095 GGTTCAAAGAAGTTGGTGCTGT 59.573 45.455 0.00 0.00 37.85 4.40
2998 3218 2.426738 TGGTTCAAAGAAGTTGGTGCTG 59.573 45.455 0.00 0.00 37.85 4.41
2999 3219 2.733956 TGGTTCAAAGAAGTTGGTGCT 58.266 42.857 0.00 0.00 37.85 4.40
3000 3220 3.733443 ATGGTTCAAAGAAGTTGGTGC 57.267 42.857 0.00 0.00 37.85 5.01
3001 3221 4.036262 TCGAATGGTTCAAAGAAGTTGGTG 59.964 41.667 0.00 0.00 37.85 4.17
3002 3222 4.204012 TCGAATGGTTCAAAGAAGTTGGT 58.796 39.130 0.00 0.00 37.85 3.67
3003 3223 4.829064 TCGAATGGTTCAAAGAAGTTGG 57.171 40.909 0.00 0.00 37.85 3.77
3004 3224 6.000891 TCATCGAATGGTTCAAAGAAGTTG 57.999 37.500 0.00 0.00 38.71 3.16
3005 3225 6.207417 ACATCATCGAATGGTTCAAAGAAGTT 59.793 34.615 2.35 0.00 0.00 2.66
3006 3226 5.707298 ACATCATCGAATGGTTCAAAGAAGT 59.293 36.000 2.35 0.00 0.00 3.01
3007 3227 6.187125 ACATCATCGAATGGTTCAAAGAAG 57.813 37.500 2.35 0.00 0.00 2.85
3008 3228 6.573664 AACATCATCGAATGGTTCAAAGAA 57.426 33.333 2.35 0.00 0.00 2.52
3009 3229 6.573664 AAACATCATCGAATGGTTCAAAGA 57.426 33.333 2.35 0.00 30.75 2.52
3010 3230 7.086376 AGAAAACATCATCGAATGGTTCAAAG 58.914 34.615 0.99 0.00 35.52 2.77
3011 3231 6.980593 AGAAAACATCATCGAATGGTTCAAA 58.019 32.000 0.99 0.00 35.52 2.69
3012 3232 6.430925 AGAGAAAACATCATCGAATGGTTCAA 59.569 34.615 0.99 0.00 35.52 2.69
3013 3233 5.939883 AGAGAAAACATCATCGAATGGTTCA 59.060 36.000 0.99 0.00 35.52 3.18
3014 3234 6.428385 AGAGAAAACATCATCGAATGGTTC 57.572 37.500 0.99 4.78 35.52 3.62
3015 3235 6.824305 AAGAGAAAACATCATCGAATGGTT 57.176 33.333 2.35 0.00 38.19 3.67
3016 3236 6.656693 AGAAAGAGAAAACATCATCGAATGGT 59.343 34.615 2.35 0.00 0.00 3.55
3023 3279 6.146184 TCGACACAGAAAGAGAAAACATCATC 59.854 38.462 0.00 0.00 0.00 2.92
3086 3343 6.312426 CGATCTTATGGCAGGAATAAAGCTAG 59.688 42.308 0.00 0.00 0.00 3.42
3090 3347 4.756642 TGCGATCTTATGGCAGGAATAAAG 59.243 41.667 0.00 0.00 39.12 1.85
3092 3349 4.350368 TGCGATCTTATGGCAGGAATAA 57.650 40.909 0.00 0.00 39.12 1.40
3123 3380 8.857216 CAGAAAACAGAATACATCAAGCATTTC 58.143 33.333 0.00 0.00 0.00 2.17
3132 3389 5.645497 AGGTGAGCAGAAAACAGAATACATC 59.355 40.000 0.00 0.00 0.00 3.06
3142 3400 2.485814 CAGCCTAAGGTGAGCAGAAAAC 59.514 50.000 0.00 0.00 44.53 2.43
3152 3410 3.616956 TGAACATCTCAGCCTAAGGTG 57.383 47.619 0.00 0.00 43.07 4.00
3169 3427 4.063998 ACATAGCGCTTCATCAGATGAA 57.936 40.909 22.16 22.16 46.30 2.57
3180 3438 3.244457 GGGTCCCTAAATACATAGCGCTT 60.244 47.826 18.68 0.00 0.00 4.68
3182 3440 2.302157 AGGGTCCCTAAATACATAGCGC 59.698 50.000 9.39 0.00 28.47 5.92
3187 3445 4.116113 TGGTTCAGGGTCCCTAAATACAT 58.884 43.478 11.12 0.00 29.64 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.