Multiple sequence alignment - TraesCS2A01G295400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G295400 chr2A 100.000 5708 0 0 1 5708 508029243 508034950 0.000000e+00 10541.0
1 TraesCS2A01G295400 chr2A 81.452 124 21 2 3043 3165 722840595 722840717 3.640000e-17 100.0
2 TraesCS2A01G295400 chr2B 91.722 4953 249 66 557 5418 446079706 446084588 0.000000e+00 6726.0
3 TraesCS2A01G295400 chr2B 89.130 184 13 5 5496 5679 446106796 446106972 7.440000e-54 222.0
4 TraesCS2A01G295400 chr2B 81.967 122 22 0 3044 3165 711726854 711726975 2.810000e-18 104.0
5 TraesCS2A01G295400 chr2B 100.000 28 0 0 5422 5449 446084752 446084779 1.000000e-02 52.8
6 TraesCS2A01G295400 chr2D 91.761 4940 211 71 573 5423 375592177 375597009 0.000000e+00 6687.0
7 TraesCS2A01G295400 chr2D 82.258 124 20 2 3043 3165 588249195 588249317 7.820000e-19 106.0
8 TraesCS2A01G295400 chr4A 98.381 556 9 0 1 556 466933784 466934339 0.000000e+00 977.0
9 TraesCS2A01G295400 chr6A 98.201 556 10 0 1 556 175997927 175997372 0.000000e+00 972.0
10 TraesCS2A01G295400 chr1A 97.695 564 13 0 1 564 85044929 85045492 0.000000e+00 970.0
11 TraesCS2A01G295400 chr7A 98.022 556 11 0 1 556 696094710 696094155 0.000000e+00 966.0
12 TraesCS2A01G295400 chr7A 97.666 557 12 1 1 557 106434376 106434931 0.000000e+00 955.0
13 TraesCS2A01G295400 chr3B 98.022 556 11 0 1 556 593862996 593863551 0.000000e+00 966.0
14 TraesCS2A01G295400 chr3B 97.482 556 14 0 1 556 565570903 565571458 0.000000e+00 950.0
15 TraesCS2A01G295400 chr1B 97.846 557 11 1 1 557 15209554 15208999 0.000000e+00 961.0
16 TraesCS2A01G295400 chr5B 97.163 564 11 4 1 563 336402137 336401578 0.000000e+00 948.0
17 TraesCS2A01G295400 chr5B 83.761 468 73 2 3950 4417 507870786 507870322 1.890000e-119 440.0
18 TraesCS2A01G295400 chr5B 82.731 249 43 0 3973 4221 507869704 507869456 7.440000e-54 222.0
19 TraesCS2A01G295400 chr4D 79.885 870 153 18 2320 3175 502709640 502710501 8.130000e-173 617.0
20 TraesCS2A01G295400 chr5A 79.260 892 167 12 2296 3175 687150104 687150989 1.760000e-169 606.0
21 TraesCS2A01G295400 chr5A 84.380 621 86 7 2556 3175 533974432 533973822 2.940000e-167 599.0
22 TraesCS2A01G295400 chr5A 81.176 765 116 16 3950 4713 533967394 533966657 1.770000e-164 590.0
23 TraesCS2A01G295400 chr5A 83.864 471 69 5 3950 4417 535117341 535116875 5.250000e-120 442.0
24 TraesCS2A01G295400 chr4B 78.812 892 171 13 2296 3175 647623912 647624797 8.240000e-163 584.0
25 TraesCS2A01G295400 chr5D 82.731 249 43 0 3973 4221 421508347 421508099 7.440000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G295400 chr2A 508029243 508034950 5707 False 10541.0 10541 100.000 1 5708 1 chr2A.!!$F1 5707
1 TraesCS2A01G295400 chr2B 446079706 446084779 5073 False 3389.4 6726 95.861 557 5449 2 chr2B.!!$F3 4892
2 TraesCS2A01G295400 chr2D 375592177 375597009 4832 False 6687.0 6687 91.761 573 5423 1 chr2D.!!$F1 4850
3 TraesCS2A01G295400 chr4A 466933784 466934339 555 False 977.0 977 98.381 1 556 1 chr4A.!!$F1 555
4 TraesCS2A01G295400 chr6A 175997372 175997927 555 True 972.0 972 98.201 1 556 1 chr6A.!!$R1 555
5 TraesCS2A01G295400 chr1A 85044929 85045492 563 False 970.0 970 97.695 1 564 1 chr1A.!!$F1 563
6 TraesCS2A01G295400 chr7A 696094155 696094710 555 True 966.0 966 98.022 1 556 1 chr7A.!!$R1 555
7 TraesCS2A01G295400 chr7A 106434376 106434931 555 False 955.0 955 97.666 1 557 1 chr7A.!!$F1 556
8 TraesCS2A01G295400 chr3B 593862996 593863551 555 False 966.0 966 98.022 1 556 1 chr3B.!!$F2 555
9 TraesCS2A01G295400 chr3B 565570903 565571458 555 False 950.0 950 97.482 1 556 1 chr3B.!!$F1 555
10 TraesCS2A01G295400 chr1B 15208999 15209554 555 True 961.0 961 97.846 1 557 1 chr1B.!!$R1 556
11 TraesCS2A01G295400 chr5B 336401578 336402137 559 True 948.0 948 97.163 1 563 1 chr5B.!!$R1 562
12 TraesCS2A01G295400 chr5B 507869456 507870786 1330 True 331.0 440 83.246 3950 4417 2 chr5B.!!$R2 467
13 TraesCS2A01G295400 chr4D 502709640 502710501 861 False 617.0 617 79.885 2320 3175 1 chr4D.!!$F1 855
14 TraesCS2A01G295400 chr5A 687150104 687150989 885 False 606.0 606 79.260 2296 3175 1 chr5A.!!$F1 879
15 TraesCS2A01G295400 chr5A 533973822 533974432 610 True 599.0 599 84.380 2556 3175 1 chr5A.!!$R2 619
16 TraesCS2A01G295400 chr5A 533966657 533967394 737 True 590.0 590 81.176 3950 4713 1 chr5A.!!$R1 763
17 TraesCS2A01G295400 chr4B 647623912 647624797 885 False 584.0 584 78.812 2296 3175 1 chr4B.!!$F1 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 338 1.004918 CGAAGGGACTGCCGACTTT 60.005 57.895 0.00 0.00 40.86 2.66 F
626 628 1.278127 GTTCTCCACTCCCGGAATTCA 59.722 52.381 0.73 0.00 33.65 2.57 F
638 640 1.397693 CGGAATTCATCGATCGCTTGC 60.398 52.381 11.09 3.33 0.00 4.01 F
1795 1849 0.174617 GGTGTCCAGTGAGCTAGAGC 59.825 60.000 0.00 0.00 42.49 4.09 F
1923 1978 0.608640 ACTGGCTCTAACTTGACGGG 59.391 55.000 0.00 0.00 0.00 5.28 F
1924 1979 0.608640 CTGGCTCTAACTTGACGGGT 59.391 55.000 0.00 0.00 0.00 5.28 F
1925 1980 1.002087 CTGGCTCTAACTTGACGGGTT 59.998 52.381 0.00 0.00 0.00 4.11 F
2199 2263 1.078426 AACTCGCAGCCCCATACAC 60.078 57.895 0.00 0.00 0.00 2.90 F
3821 3946 0.391130 GCACGCACACCTCCAATCTA 60.391 55.000 0.00 0.00 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1402 0.537188 TCAGCTCGGGGTCAAGAATC 59.463 55.000 0.00 0.0 0.00 2.52 R
1428 1477 0.753479 TCGAGCAGGAGAGATGGGTC 60.753 60.000 0.00 0.0 0.00 4.46 R
2543 2633 1.269166 CACCTCGTAGTTGATGTCGC 58.731 55.000 0.00 0.0 0.00 5.19 R
3526 3651 1.076332 CAAGGCAAGGCAGTACGTAC 58.924 55.000 18.10 18.1 0.00 3.67 R
3605 3730 1.080772 CGCGCCGGATAAGATAGCA 60.081 57.895 5.05 0.0 0.00 3.49 R
3821 3946 1.277557 CAGTTCAGTTGGAGCCTAGCT 59.722 52.381 0.00 0.0 43.88 3.32 R
3822 3947 1.677217 CCAGTTCAGTTGGAGCCTAGC 60.677 57.143 0.00 0.0 37.96 3.42 R
3903 4048 1.733912 CCATGAACTCATCACCACACG 59.266 52.381 0.00 0.0 41.93 4.49 R
5653 6224 0.030908 GGTCTAATCGGCGTGAGAGG 59.969 60.000 6.85 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.078426 GTACCGAGCTGTGGCCAAT 60.078 57.895 7.24 0.00 39.73 3.16
203 204 3.835790 CTCCGCCAACCCCGTTCAA 62.836 63.158 0.00 0.00 0.00 2.69
337 338 1.004918 CGAAGGGACTGCCGACTTT 60.005 57.895 0.00 0.00 40.86 2.66
439 441 3.181479 CGTGTATATGTGTGTGTAGGGCT 60.181 47.826 0.00 0.00 0.00 5.19
475 477 4.595781 TCCTTGTATAGTTGAGGTTGTGGT 59.404 41.667 0.00 0.00 0.00 4.16
557 559 6.156256 ACAGCCATAACTTGTCCTTCTACATA 59.844 38.462 0.00 0.00 0.00 2.29
564 566 4.099573 ACTTGTCCTTCTACATATCCCACG 59.900 45.833 0.00 0.00 0.00 4.94
565 567 2.963101 TGTCCTTCTACATATCCCACGG 59.037 50.000 0.00 0.00 0.00 4.94
566 568 3.228453 GTCCTTCTACATATCCCACGGA 58.772 50.000 0.00 0.00 35.55 4.69
567 569 3.005578 GTCCTTCTACATATCCCACGGAC 59.994 52.174 0.00 0.00 32.98 4.79
568 570 3.117246 TCCTTCTACATATCCCACGGACT 60.117 47.826 0.00 0.00 32.98 3.85
569 571 3.005897 CCTTCTACATATCCCACGGACTG 59.994 52.174 0.00 0.00 32.98 3.51
570 572 3.308035 TCTACATATCCCACGGACTGT 57.692 47.619 0.00 3.89 35.80 3.55
571 573 4.442401 TCTACATATCCCACGGACTGTA 57.558 45.455 0.00 5.36 34.29 2.74
572 574 4.395625 TCTACATATCCCACGGACTGTAG 58.604 47.826 18.01 18.01 44.27 2.74
573 575 3.028094 ACATATCCCACGGACTGTAGT 57.972 47.619 0.00 0.00 32.98 2.73
620 622 2.261671 CGTGTTCTCCACTCCCGG 59.738 66.667 0.00 0.00 42.20 5.73
626 628 1.278127 GTTCTCCACTCCCGGAATTCA 59.722 52.381 0.73 0.00 33.65 2.57
632 634 2.408050 CACTCCCGGAATTCATCGATC 58.592 52.381 0.73 0.00 0.00 3.69
638 640 1.397693 CGGAATTCATCGATCGCTTGC 60.398 52.381 11.09 3.33 0.00 4.01
647 649 4.845580 ATCGCTTGCTCCGGCCAG 62.846 66.667 2.24 0.00 37.74 4.85
683 685 2.125552 TGCCTCGGATGACAAGCG 60.126 61.111 0.00 0.00 0.00 4.68
684 686 2.892425 GCCTCGGATGACAAGCGG 60.892 66.667 0.00 0.00 0.00 5.52
687 689 4.812476 TCGGATGACAAGCGGGCG 62.812 66.667 0.00 0.00 0.00 6.13
718 740 4.081862 TCGTATGGTGGAGGTGAAAACTAG 60.082 45.833 0.00 0.00 0.00 2.57
764 786 3.495753 GGCCATTGTTTTCTCAAAAGCAG 59.504 43.478 0.00 0.00 37.00 4.24
774 796 7.335422 TGTTTTCTCAAAAGCAGCCAATAAAAA 59.665 29.630 0.00 0.00 31.57 1.94
778 800 6.257630 TCTCAAAAGCAGCCAATAAAAACAAC 59.742 34.615 0.00 0.00 0.00 3.32
817 839 4.335647 AGCAACCAGACCCAGCCG 62.336 66.667 0.00 0.00 0.00 5.52
856 878 2.800544 ACGTTTCCACAGATTTCTCACG 59.199 45.455 0.00 0.00 0.00 4.35
907 929 5.420739 AGAAGCTACCTGAGAAAGTCCTAAG 59.579 44.000 0.00 0.00 0.00 2.18
916 938 8.218488 ACCTGAGAAAGTCCTAAGTAAACATTT 58.782 33.333 0.00 0.00 0.00 2.32
917 939 9.720769 CCTGAGAAAGTCCTAAGTAAACATTTA 57.279 33.333 0.00 0.00 0.00 1.40
1026 1048 5.267587 CCCCAGGAAAAATCTCTCTTCATT 58.732 41.667 0.00 0.00 0.00 2.57
1164 1204 2.738000 GCTTCTGCACAGACATCGATCT 60.738 50.000 0.00 0.00 37.14 2.75
1173 1213 5.449862 GCACAGACATCGATCTTTCTCTACT 60.450 44.000 0.00 0.00 0.00 2.57
1363 1412 1.706287 GCCGCCTTCGATTCTTGACC 61.706 60.000 0.00 0.00 38.10 4.02
1428 1477 0.321210 TCAACGGTACATGCCCACTG 60.321 55.000 0.00 0.00 0.00 3.66
1443 1492 0.177604 CACTGACCCATCTCTCCTGC 59.822 60.000 0.00 0.00 0.00 4.85
1481 1532 2.279935 TAGAGCTAGCTAGGCAGACC 57.720 55.000 19.38 2.04 0.00 3.85
1503 1554 4.381292 CCTCCTTCTTTTGCATGGCTAAAG 60.381 45.833 15.65 15.65 46.69 1.85
1621 1672 4.871933 CTTGGGCCATACAAGAAACTTT 57.128 40.909 7.26 0.00 46.27 2.66
1622 1673 4.809673 CTTGGGCCATACAAGAAACTTTC 58.190 43.478 7.26 0.00 46.27 2.62
1623 1674 2.817258 TGGGCCATACAAGAAACTTTCG 59.183 45.455 0.00 0.00 34.02 3.46
1639 1690 7.385752 AGAAACTTTCGTAATCGTGTCCATTTA 59.614 33.333 0.00 0.00 38.33 1.40
1692 1743 3.064931 GGTGCTCAGTTTGTGTAGTACC 58.935 50.000 0.00 0.00 37.52 3.34
1742 1793 3.185246 TGCATGCTTTAGGACTAGCTC 57.815 47.619 20.33 0.00 38.22 4.09
1795 1849 0.174617 GGTGTCCAGTGAGCTAGAGC 59.825 60.000 0.00 0.00 42.49 4.09
1829 1883 2.912624 GCACTTGTGTGGCCTGAGC 61.913 63.158 3.32 0.00 43.97 4.26
1849 1903 6.246919 TGAGCAGTATCCTACTCCTAATACC 58.753 44.000 0.00 0.00 36.76 2.73
1875 1929 8.705134 CGTGGATTAGTTTAATAACGATGCATA 58.295 33.333 0.00 0.00 39.08 3.14
1920 1975 7.104290 AGGTTTATAACTGGCTCTAACTTGAC 58.896 38.462 0.00 0.00 0.00 3.18
1922 1977 2.457366 AACTGGCTCTAACTTGACGG 57.543 50.000 0.00 0.00 0.00 4.79
1923 1978 0.608640 ACTGGCTCTAACTTGACGGG 59.391 55.000 0.00 0.00 0.00 5.28
1924 1979 0.608640 CTGGCTCTAACTTGACGGGT 59.391 55.000 0.00 0.00 0.00 5.28
1925 1980 1.002087 CTGGCTCTAACTTGACGGGTT 59.998 52.381 0.00 0.00 0.00 4.11
1926 1981 1.418637 TGGCTCTAACTTGACGGGTTT 59.581 47.619 0.00 0.00 0.00 3.27
1957 2021 1.250154 ATCATGTTGGTGGTTGCCGG 61.250 55.000 0.00 0.00 0.00 6.13
2121 2185 3.261981 ACGCCTTTTCGTCCTGATTAT 57.738 42.857 0.00 0.00 38.44 1.28
2122 2186 4.395959 ACGCCTTTTCGTCCTGATTATA 57.604 40.909 0.00 0.00 38.44 0.98
2123 2187 4.117685 ACGCCTTTTCGTCCTGATTATAC 58.882 43.478 0.00 0.00 38.44 1.47
2124 2188 3.181774 CGCCTTTTCGTCCTGATTATACG 59.818 47.826 0.00 0.00 37.96 3.06
2125 2189 4.117685 GCCTTTTCGTCCTGATTATACGT 58.882 43.478 0.00 0.00 37.83 3.57
2126 2190 5.284079 GCCTTTTCGTCCTGATTATACGTA 58.716 41.667 0.00 0.00 37.83 3.57
2127 2191 5.174579 GCCTTTTCGTCCTGATTATACGTAC 59.825 44.000 0.00 0.00 37.83 3.67
2128 2192 6.501781 CCTTTTCGTCCTGATTATACGTACT 58.498 40.000 0.00 0.00 37.83 2.73
2129 2193 7.642669 CCTTTTCGTCCTGATTATACGTACTA 58.357 38.462 0.00 0.00 37.83 1.82
2130 2194 7.802251 CCTTTTCGTCCTGATTATACGTACTAG 59.198 40.741 0.00 0.00 37.83 2.57
2185 2249 1.975363 GCTGCATGGCTCGTGAACTC 61.975 60.000 0.00 0.00 0.00 3.01
2189 2253 1.446792 ATGGCTCGTGAACTCGCAG 60.447 57.895 0.00 0.00 0.00 5.18
2199 2263 1.078426 AACTCGCAGCCCCATACAC 60.078 57.895 0.00 0.00 0.00 2.90
2231 2297 4.351192 ACGAATGAAAATAATTGGCTCGC 58.649 39.130 0.00 0.00 0.00 5.03
2251 2317 4.404394 TCGCCATTAACCTTCACTGAGATA 59.596 41.667 0.00 0.00 0.00 1.98
2279 2369 2.644299 TCATGGGAATGTGAACTGGACT 59.356 45.455 0.00 0.00 0.00 3.85
2285 2375 4.074970 GGAATGTGAACTGGACTTGTGAT 58.925 43.478 0.00 0.00 0.00 3.06
2318 2408 4.137872 GCATGCAGCGCCCATGTT 62.138 61.111 28.43 0.00 41.56 2.71
2346 2436 4.380791 AGGGGTGGTACCATTTCTTCTAT 58.619 43.478 19.72 0.00 41.02 1.98
2736 2829 3.222855 CTCATCGGCGCCCTCTCT 61.223 66.667 23.46 0.00 0.00 3.10
3178 3284 1.227674 GCCGGAATCCAGGTAGCTG 60.228 63.158 15.13 15.13 0.00 4.24
3179 3285 1.227674 CCGGAATCCAGGTAGCTGC 60.228 63.158 16.62 0.00 0.00 5.25
3180 3286 1.227674 CGGAATCCAGGTAGCTGCC 60.228 63.158 13.81 13.81 0.00 4.85
3181 3287 1.690219 CGGAATCCAGGTAGCTGCCT 61.690 60.000 18.88 18.88 39.99 4.75
3254 3361 2.785540 TGCATGCATGGTCTCAGTTA 57.214 45.000 27.34 0.00 0.00 2.24
3332 3439 3.138798 CAGCTGATGCAGTGGCCC 61.139 66.667 8.42 0.00 42.74 5.80
3384 3491 1.592223 CCGGTGAGTCTCAAGGACC 59.408 63.158 16.71 8.13 45.54 4.46
3490 3615 4.370917 GTGTGCAATCAAGGTGACATTTT 58.629 39.130 0.00 0.00 0.00 1.82
3491 3616 4.445385 GTGTGCAATCAAGGTGACATTTTC 59.555 41.667 0.00 0.00 0.00 2.29
3492 3617 4.341806 TGTGCAATCAAGGTGACATTTTCT 59.658 37.500 0.00 0.00 0.00 2.52
3493 3618 5.534278 TGTGCAATCAAGGTGACATTTTCTA 59.466 36.000 0.00 0.00 0.00 2.10
3494 3619 6.088824 GTGCAATCAAGGTGACATTTTCTAG 58.911 40.000 0.00 0.00 0.00 2.43
3526 3651 3.567576 AAGGCGATCGAGATCACTATG 57.432 47.619 21.57 0.00 37.69 2.23
3575 3700 1.821136 GGCCCTGCAGAATATATTGCC 59.179 52.381 17.39 9.65 39.54 4.52
3605 3730 3.371965 AGTATGTGTTATCCTGGACCGT 58.628 45.455 0.00 0.00 0.00 4.83
3664 3789 1.963338 GTGTGCAGTGCCCACTCTC 60.963 63.158 21.65 0.00 40.20 3.20
3715 3840 2.572290 ACACCTGTCCTGCACTTTAAC 58.428 47.619 0.00 0.00 0.00 2.01
3745 3870 1.787847 GTCATGCGTTCTGTTCCGG 59.212 57.895 0.00 0.00 0.00 5.14
3808 3933 4.360964 GCATTGGCCTTGCACGCA 62.361 61.111 21.72 0.00 39.90 5.24
3811 3936 3.211564 ATTGGCCTTGCACGCACAC 62.212 57.895 3.32 0.00 0.00 3.82
3814 3939 4.030452 GCCTTGCACGCACACCTC 62.030 66.667 0.03 0.00 0.00 3.85
3817 3942 2.124529 TTGCACGCACACCTCCAA 60.125 55.556 0.00 0.00 0.00 3.53
3818 3943 1.518056 CTTGCACGCACACCTCCAAT 61.518 55.000 0.00 0.00 0.00 3.16
3819 3944 1.514678 TTGCACGCACACCTCCAATC 61.515 55.000 0.00 0.00 0.00 2.67
3820 3945 1.672356 GCACGCACACCTCCAATCT 60.672 57.895 0.00 0.00 0.00 2.40
3821 3946 0.391130 GCACGCACACCTCCAATCTA 60.391 55.000 0.00 0.00 0.00 1.98
3822 3947 1.645034 CACGCACACCTCCAATCTAG 58.355 55.000 0.00 0.00 0.00 2.43
3842 3973 1.677217 GCTAGGCTCCAACTGAACTGG 60.677 57.143 0.00 0.00 35.05 4.00
3886 4031 9.400638 TCGTTTTAATTTGACCAACATAATGTC 57.599 29.630 0.00 0.00 0.00 3.06
3903 4048 5.453567 AATGTCTGTTCCCTTTTGTAAGC 57.546 39.130 0.00 0.00 0.00 3.09
3922 4067 1.129251 GCGTGTGGTGATGAGTTCATG 59.871 52.381 0.00 0.00 36.54 3.07
3928 4073 5.003160 TGTGGTGATGAGTTCATGGTTAAG 58.997 41.667 0.00 0.00 36.54 1.85
4140 4285 2.654877 GACGGCGGTCTTCTTCCA 59.345 61.111 16.52 0.00 40.15 3.53
4216 4361 1.592743 CGACCCCACCACGTAATGA 59.407 57.895 0.00 0.00 0.00 2.57
4224 4369 2.168521 CCACCACGTAATGACATCTCCT 59.831 50.000 0.00 0.00 0.00 3.69
4236 4381 5.287674 TGACATCTCCTGATCCTCATTTC 57.712 43.478 0.00 0.00 0.00 2.17
4296 4441 5.220586 GCACACATTAGCTAGCGTTGATTTA 60.221 40.000 17.70 0.00 0.00 1.40
4313 4458 5.237048 TGATTTAATGTTGGGCTTCTTTGC 58.763 37.500 0.00 0.00 0.00 3.68
4452 4597 5.540337 ACCATATGTTCCTCATCTCGTACAT 59.460 40.000 1.24 0.00 37.91 2.29
4453 4598 6.719829 ACCATATGTTCCTCATCTCGTACATA 59.280 38.462 1.24 0.00 37.91 2.29
4454 4599 7.030165 CCATATGTTCCTCATCTCGTACATAC 58.970 42.308 1.24 0.00 37.91 2.39
4493 4639 8.055279 ACAAATGGATCATTCGTACTGATTTT 57.945 30.769 0.00 0.00 32.43 1.82
4505 4651 5.092781 CGTACTGATTTTGTTTGCCCATAC 58.907 41.667 0.00 0.00 0.00 2.39
4534 4680 2.617308 GTCTAGATTGATCGGTCCGTCA 59.383 50.000 11.88 11.42 0.00 4.35
4581 4729 2.285368 TGCATCCTCTCCCGGGTT 60.285 61.111 22.86 0.00 0.00 4.11
4587 4735 0.340558 TCCTCTCCCGGGTTTATCCA 59.659 55.000 22.86 0.00 38.11 3.41
4620 4768 1.160137 GCAAGAACGCTCACCTTCAT 58.840 50.000 0.00 0.00 0.00 2.57
4714 5118 6.662414 TCATGAACGGTGCTTAGAATTTAG 57.338 37.500 0.00 0.00 0.00 1.85
4721 5125 4.686122 CGGTGCTTAGAATTTAGGGTGGAT 60.686 45.833 0.00 0.00 0.00 3.41
4722 5126 5.454187 CGGTGCTTAGAATTTAGGGTGGATA 60.454 44.000 0.00 0.00 0.00 2.59
4744 5148 4.873746 TCTACATGCAGGCTTCCTATAC 57.126 45.455 0.00 0.00 29.64 1.47
4780 5184 3.252215 TGGCTCACGTTCTGTTAAATTGG 59.748 43.478 0.00 0.00 0.00 3.16
4794 5198 5.888724 TGTTAAATTGGTCTCTGGTGAAACA 59.111 36.000 0.00 0.00 39.98 2.83
4799 5203 4.371624 TGGTCTCTGGTGAAACATGATT 57.628 40.909 0.00 0.00 39.98 2.57
4801 5205 3.441572 GGTCTCTGGTGAAACATGATTGG 59.558 47.826 0.00 0.00 39.98 3.16
4805 5209 4.074259 TCTGGTGAAACATGATTGGTCTG 58.926 43.478 0.00 0.00 39.98 3.51
4806 5210 3.822735 CTGGTGAAACATGATTGGTCTGT 59.177 43.478 0.00 0.00 39.98 3.41
4818 5222 2.519771 TGGTCTGTGAGGGTACGTAT 57.480 50.000 0.00 0.00 0.00 3.06
4938 5342 7.617225 TGGTGGAAAGTATATATATTGTCGGG 58.383 38.462 0.00 0.00 0.00 5.14
4949 5353 1.084289 ATTGTCGGGCGAGTTTTAGC 58.916 50.000 0.00 0.00 0.00 3.09
4967 5371 0.877743 GCTTCCAAGGTTGCACTCTC 59.122 55.000 0.00 0.00 0.00 3.20
4976 5380 5.221224 CCAAGGTTGCACTCTCTCTATCTAG 60.221 48.000 0.00 0.00 0.00 2.43
4987 5391 9.625747 CACTCTCTCTATCTAGCCATTATATCA 57.374 37.037 0.00 0.00 0.00 2.15
4988 5392 9.851686 ACTCTCTCTATCTAGCCATTATATCAG 57.148 37.037 0.00 0.00 0.00 2.90
5011 5415 7.978975 TCAGTAAAGGAAAGGTTCATTTTTGTG 59.021 33.333 6.01 3.10 40.35 3.33
5035 5439 1.078988 GACCATCGCCGGGTTTACA 60.079 57.895 2.18 0.00 39.19 2.41
5069 5473 2.224548 ACCCTACAACCTGACAAGCTTC 60.225 50.000 0.00 0.00 0.00 3.86
5078 5482 1.808945 CTGACAAGCTTCACCCATGAC 59.191 52.381 0.00 0.00 33.38 3.06
5093 5497 8.563123 TCACCCATGACGTTTACATTATTTAA 57.437 30.769 0.00 0.00 0.00 1.52
5095 5499 9.796120 CACCCATGACGTTTACATTATTTAATT 57.204 29.630 0.00 0.00 0.00 1.40
5255 5666 4.514066 TCGACCTTGTTTTCTAAGGCTTTC 59.486 41.667 4.45 0.00 46.89 2.62
5279 5690 2.203209 CCGAAGTGGGGGCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
5282 5693 1.097547 CGAAGTGGGGGCATAGCAAG 61.098 60.000 0.00 0.00 0.00 4.01
5341 5752 0.392336 TGGCAATTTGGTTGAGGTGC 59.608 50.000 0.00 0.00 40.37 5.01
5360 5771 4.807304 GGTGCAATGCCATTAAATGAAGAG 59.193 41.667 1.53 0.00 0.00 2.85
5385 5796 1.428448 TAAGCGATGTGTCACTGTGC 58.572 50.000 2.12 5.27 0.00 4.57
5406 5817 3.124976 GCGCCATGCAAAACAATAAATGT 59.875 39.130 0.00 0.00 44.28 2.71
5449 6020 8.204160 ACATAGATACTATGCACTGCAAAAGTA 58.796 33.333 22.34 22.34 43.62 2.24
5450 6021 8.706936 CATAGATACTATGCACTGCAAAAGTAG 58.293 37.037 23.47 16.58 43.62 2.57
5451 6022 6.644347 AGATACTATGCACTGCAAAAGTAGT 58.356 36.000 23.47 19.95 43.62 2.73
5452 6023 7.782049 AGATACTATGCACTGCAAAAGTAGTA 58.218 34.615 23.47 20.97 43.62 1.82
5453 6024 7.707035 AGATACTATGCACTGCAAAAGTAGTAC 59.293 37.037 23.47 18.75 43.62 2.73
5454 6025 5.794894 ACTATGCACTGCAAAAGTAGTACT 58.205 37.500 16.79 0.00 43.62 2.73
5455 6026 6.931838 ACTATGCACTGCAAAAGTAGTACTA 58.068 36.000 16.79 0.00 43.62 1.82
5456 6027 7.036220 ACTATGCACTGCAAAAGTAGTACTAG 58.964 38.462 16.79 9.11 43.62 2.57
5457 6028 5.209818 TGCACTGCAAAAGTAGTACTAGT 57.790 39.130 1.87 3.18 36.83 2.57
5458 6029 4.988540 TGCACTGCAAAAGTAGTACTAGTG 59.011 41.667 19.40 19.40 36.83 2.74
5459 6030 4.989168 GCACTGCAAAAGTAGTACTAGTGT 59.011 41.667 22.39 2.60 36.83 3.55
5460 6031 5.107453 GCACTGCAAAAGTAGTACTAGTGTG 60.107 44.000 22.39 13.30 36.83 3.82
5461 6032 5.983720 CACTGCAAAAGTAGTACTAGTGTGT 59.016 40.000 16.92 11.84 36.83 3.72
5462 6033 5.983720 ACTGCAAAAGTAGTACTAGTGTGTG 59.016 40.000 11.04 10.17 37.36 3.82
5463 6034 6.151663 TGCAAAAGTAGTACTAGTGTGTGA 57.848 37.500 11.04 2.44 0.00 3.58
5464 6035 6.755206 TGCAAAAGTAGTACTAGTGTGTGAT 58.245 36.000 11.04 0.00 0.00 3.06
5465 6036 7.888424 TGCAAAAGTAGTACTAGTGTGTGATA 58.112 34.615 11.04 1.53 0.00 2.15
5466 6037 8.528643 TGCAAAAGTAGTACTAGTGTGTGATAT 58.471 33.333 11.04 0.00 0.00 1.63
5471 6042 9.558396 AAGTAGTACTAGTGTGTGATATACTCC 57.442 37.037 11.04 0.00 32.53 3.85
5472 6043 8.712103 AGTAGTACTAGTGTGTGATATACTCCA 58.288 37.037 9.52 0.00 32.53 3.86
5473 6044 7.804843 AGTACTAGTGTGTGATATACTCCAC 57.195 40.000 5.39 0.00 32.53 4.02
5474 6045 6.771749 AGTACTAGTGTGTGATATACTCCACC 59.228 42.308 5.39 0.00 34.47 4.61
5475 6046 5.516044 ACTAGTGTGTGATATACTCCACCA 58.484 41.667 0.00 0.00 34.47 4.17
5476 6047 5.594725 ACTAGTGTGTGATATACTCCACCAG 59.405 44.000 0.00 0.00 34.47 4.00
5477 6048 4.610333 AGTGTGTGATATACTCCACCAGA 58.390 43.478 0.00 0.00 34.47 3.86
5478 6049 5.023452 AGTGTGTGATATACTCCACCAGAA 58.977 41.667 0.00 0.00 34.47 3.02
5479 6050 5.127845 AGTGTGTGATATACTCCACCAGAAG 59.872 44.000 0.00 0.00 34.47 2.85
5480 6051 5.023452 TGTGTGATATACTCCACCAGAAGT 58.977 41.667 0.00 0.00 32.61 3.01
5481 6052 6.096423 GTGTGTGATATACTCCACCAGAAGTA 59.904 42.308 0.00 0.00 32.61 2.24
5482 6053 6.321435 TGTGTGATATACTCCACCAGAAGTAG 59.679 42.308 0.00 0.00 32.61 2.57
5483 6054 5.302059 TGTGATATACTCCACCAGAAGTAGC 59.698 44.000 0.00 0.00 32.61 3.58
5484 6055 4.833380 TGATATACTCCACCAGAAGTAGCC 59.167 45.833 0.00 0.00 0.00 3.93
5485 6056 2.921834 TACTCCACCAGAAGTAGCCT 57.078 50.000 0.00 0.00 0.00 4.58
5486 6057 2.031495 ACTCCACCAGAAGTAGCCTT 57.969 50.000 0.00 0.00 0.00 4.35
5487 6058 3.185880 ACTCCACCAGAAGTAGCCTTA 57.814 47.619 0.00 0.00 0.00 2.69
5488 6059 3.100671 ACTCCACCAGAAGTAGCCTTAG 58.899 50.000 0.00 0.00 0.00 2.18
5489 6060 3.245658 ACTCCACCAGAAGTAGCCTTAGA 60.246 47.826 0.00 0.00 0.00 2.10
5490 6061 3.769844 CTCCACCAGAAGTAGCCTTAGAA 59.230 47.826 0.00 0.00 0.00 2.10
5491 6062 4.164981 TCCACCAGAAGTAGCCTTAGAAA 58.835 43.478 0.00 0.00 0.00 2.52
5492 6063 4.595781 TCCACCAGAAGTAGCCTTAGAAAA 59.404 41.667 0.00 0.00 0.00 2.29
5493 6064 5.072600 TCCACCAGAAGTAGCCTTAGAAAAA 59.927 40.000 0.00 0.00 0.00 1.94
5494 6065 5.412904 CCACCAGAAGTAGCCTTAGAAAAAG 59.587 44.000 0.00 0.00 0.00 2.27
5495 6066 5.412904 CACCAGAAGTAGCCTTAGAAAAAGG 59.587 44.000 0.00 0.00 40.39 3.11
5496 6067 5.309806 ACCAGAAGTAGCCTTAGAAAAAGGA 59.690 40.000 7.97 0.00 39.81 3.36
5497 6068 5.644206 CCAGAAGTAGCCTTAGAAAAAGGAC 59.356 44.000 7.97 0.00 39.81 3.85
5498 6069 5.644206 CAGAAGTAGCCTTAGAAAAAGGACC 59.356 44.000 7.97 0.00 39.81 4.46
5499 6070 4.571369 AGTAGCCTTAGAAAAAGGACCC 57.429 45.455 7.97 0.00 39.81 4.46
5500 6071 3.914435 AGTAGCCTTAGAAAAAGGACCCA 59.086 43.478 7.97 0.00 39.81 4.51
5501 6072 3.895704 AGCCTTAGAAAAAGGACCCAA 57.104 42.857 7.97 0.00 39.81 4.12
5502 6073 4.193240 AGCCTTAGAAAAAGGACCCAAA 57.807 40.909 7.97 0.00 39.81 3.28
5503 6074 4.752063 AGCCTTAGAAAAAGGACCCAAAT 58.248 39.130 7.97 0.00 39.81 2.32
5504 6075 4.528206 AGCCTTAGAAAAAGGACCCAAATG 59.472 41.667 7.97 0.00 39.81 2.32
5505 6076 4.820897 CCTTAGAAAAAGGACCCAAATGC 58.179 43.478 0.00 0.00 39.81 3.56
5506 6077 4.283212 CCTTAGAAAAAGGACCCAAATGCA 59.717 41.667 0.00 0.00 39.81 3.96
5507 6078 5.221621 CCTTAGAAAAAGGACCCAAATGCAA 60.222 40.000 0.00 0.00 39.81 4.08
5508 6079 4.769345 AGAAAAAGGACCCAAATGCAAA 57.231 36.364 0.00 0.00 0.00 3.68
5509 6080 4.707105 AGAAAAAGGACCCAAATGCAAAG 58.293 39.130 0.00 0.00 0.00 2.77
5510 6081 4.408596 AGAAAAAGGACCCAAATGCAAAGA 59.591 37.500 0.00 0.00 0.00 2.52
5511 6082 3.751479 AAAGGACCCAAATGCAAAGAC 57.249 42.857 0.00 0.00 0.00 3.01
5512 6083 2.683211 AGGACCCAAATGCAAAGACT 57.317 45.000 0.00 0.00 0.00 3.24
5513 6084 2.962859 AGGACCCAAATGCAAAGACTT 58.037 42.857 0.00 0.00 0.00 3.01
5514 6085 2.629617 AGGACCCAAATGCAAAGACTTG 59.370 45.455 0.00 0.00 35.49 3.16
5515 6086 2.627699 GGACCCAAATGCAAAGACTTGA 59.372 45.455 0.00 0.00 34.14 3.02
5516 6087 3.552890 GGACCCAAATGCAAAGACTTGAC 60.553 47.826 0.00 0.00 34.14 3.18
5517 6088 3.030291 ACCCAAATGCAAAGACTTGACA 58.970 40.909 0.00 0.00 34.14 3.58
5518 6089 3.068590 ACCCAAATGCAAAGACTTGACAG 59.931 43.478 0.00 0.00 34.14 3.51
5519 6090 3.054878 CCAAATGCAAAGACTTGACAGC 58.945 45.455 0.00 0.00 34.14 4.40
5520 6091 3.491276 CCAAATGCAAAGACTTGACAGCA 60.491 43.478 0.00 7.16 34.14 4.41
5521 6092 4.114073 CAAATGCAAAGACTTGACAGCAA 58.886 39.130 0.00 0.00 35.45 3.91
5522 6093 4.389890 AATGCAAAGACTTGACAGCAAA 57.610 36.364 0.00 0.00 35.45 3.68
5523 6094 3.865011 TGCAAAGACTTGACAGCAAAA 57.135 38.095 0.00 0.00 34.14 2.44
5524 6095 4.389890 TGCAAAGACTTGACAGCAAAAT 57.610 36.364 0.00 0.00 34.14 1.82
5525 6096 5.512753 TGCAAAGACTTGACAGCAAAATA 57.487 34.783 0.00 0.00 34.14 1.40
5526 6097 5.900425 TGCAAAGACTTGACAGCAAAATAA 58.100 33.333 0.00 0.00 34.14 1.40
5527 6098 5.978919 TGCAAAGACTTGACAGCAAAATAAG 59.021 36.000 0.00 0.00 34.14 1.73
5528 6099 5.979517 GCAAAGACTTGACAGCAAAATAAGT 59.020 36.000 0.00 0.00 34.14 2.24
5529 6100 7.138736 GCAAAGACTTGACAGCAAAATAAGTA 58.861 34.615 0.00 0.00 34.14 2.24
5530 6101 7.324616 GCAAAGACTTGACAGCAAAATAAGTAG 59.675 37.037 0.00 0.00 34.14 2.57
5531 6102 8.559536 CAAAGACTTGACAGCAAAATAAGTAGA 58.440 33.333 0.00 0.00 34.14 2.59
5532 6103 7.659652 AGACTTGACAGCAAAATAAGTAGAC 57.340 36.000 0.00 0.00 32.23 2.59
5533 6104 7.217200 AGACTTGACAGCAAAATAAGTAGACA 58.783 34.615 0.00 0.00 32.23 3.41
5534 6105 7.715249 AGACTTGACAGCAAAATAAGTAGACAA 59.285 33.333 0.00 0.00 32.23 3.18
5535 6106 8.396272 ACTTGACAGCAAAATAAGTAGACAAT 57.604 30.769 0.00 0.00 32.73 2.71
5536 6107 8.850156 ACTTGACAGCAAAATAAGTAGACAATT 58.150 29.630 0.00 0.00 32.73 2.32
5575 6146 3.066291 ACATATTTTGTCCACGAGCCA 57.934 42.857 0.00 0.00 30.89 4.75
5576 6147 2.747446 ACATATTTTGTCCACGAGCCAC 59.253 45.455 0.00 0.00 30.89 5.01
5577 6148 2.851263 TATTTTGTCCACGAGCCACT 57.149 45.000 0.00 0.00 0.00 4.00
5578 6149 1.981256 ATTTTGTCCACGAGCCACTT 58.019 45.000 0.00 0.00 0.00 3.16
5579 6150 1.757682 TTTTGTCCACGAGCCACTTT 58.242 45.000 0.00 0.00 0.00 2.66
5580 6151 2.623878 TTTGTCCACGAGCCACTTTA 57.376 45.000 0.00 0.00 0.00 1.85
5581 6152 2.623878 TTGTCCACGAGCCACTTTAA 57.376 45.000 0.00 0.00 0.00 1.52
5582 6153 2.623878 TGTCCACGAGCCACTTTAAA 57.376 45.000 0.00 0.00 0.00 1.52
5583 6154 2.489971 TGTCCACGAGCCACTTTAAAG 58.510 47.619 13.76 13.76 0.00 1.85
5584 6155 2.103432 TGTCCACGAGCCACTTTAAAGA 59.897 45.455 21.92 0.00 0.00 2.52
5585 6156 3.244422 TGTCCACGAGCCACTTTAAAGAT 60.244 43.478 21.92 3.51 0.00 2.40
5586 6157 4.020928 TGTCCACGAGCCACTTTAAAGATA 60.021 41.667 21.92 0.00 0.00 1.98
5587 6158 4.329256 GTCCACGAGCCACTTTAAAGATAC 59.671 45.833 21.92 9.63 0.00 2.24
5588 6159 4.020928 TCCACGAGCCACTTTAAAGATACA 60.021 41.667 21.92 0.00 0.00 2.29
5589 6160 4.693566 CCACGAGCCACTTTAAAGATACAA 59.306 41.667 21.92 0.00 0.00 2.41
5590 6161 5.390567 CCACGAGCCACTTTAAAGATACAAC 60.391 44.000 21.92 7.41 0.00 3.32
5591 6162 4.694037 ACGAGCCACTTTAAAGATACAACC 59.306 41.667 21.92 4.03 0.00 3.77
5592 6163 4.693566 CGAGCCACTTTAAAGATACAACCA 59.306 41.667 21.92 0.00 0.00 3.67
5593 6164 5.180492 CGAGCCACTTTAAAGATACAACCAA 59.820 40.000 21.92 0.00 0.00 3.67
5594 6165 6.128007 CGAGCCACTTTAAAGATACAACCAAT 60.128 38.462 21.92 0.00 0.00 3.16
5595 6166 6.924111 AGCCACTTTAAAGATACAACCAATG 58.076 36.000 21.92 5.33 0.00 2.82
5596 6167 6.719370 AGCCACTTTAAAGATACAACCAATGA 59.281 34.615 21.92 0.00 0.00 2.57
5597 6168 6.806739 GCCACTTTAAAGATACAACCAATGAC 59.193 38.462 21.92 0.00 0.00 3.06
5598 6169 7.523052 GCCACTTTAAAGATACAACCAATGACA 60.523 37.037 21.92 0.00 0.00 3.58
5599 6170 7.807907 CCACTTTAAAGATACAACCAATGACAC 59.192 37.037 21.92 0.00 0.00 3.67
5600 6171 8.567948 CACTTTAAAGATACAACCAATGACACT 58.432 33.333 21.92 0.00 0.00 3.55
5601 6172 8.567948 ACTTTAAAGATACAACCAATGACACTG 58.432 33.333 21.92 0.00 0.00 3.66
5602 6173 5.376854 AAAGATACAACCAATGACACTGC 57.623 39.130 0.00 0.00 0.00 4.40
5603 6174 4.292186 AGATACAACCAATGACACTGCT 57.708 40.909 0.00 0.00 0.00 4.24
5604 6175 5.420725 AGATACAACCAATGACACTGCTA 57.579 39.130 0.00 0.00 0.00 3.49
5605 6176 5.994250 AGATACAACCAATGACACTGCTAT 58.006 37.500 0.00 0.00 0.00 2.97
5606 6177 7.124573 AGATACAACCAATGACACTGCTATA 57.875 36.000 0.00 0.00 0.00 1.31
5607 6178 7.739825 AGATACAACCAATGACACTGCTATAT 58.260 34.615 0.00 0.00 0.00 0.86
5608 6179 7.658982 AGATACAACCAATGACACTGCTATATG 59.341 37.037 0.00 0.00 0.00 1.78
5609 6180 5.500234 ACAACCAATGACACTGCTATATGT 58.500 37.500 0.00 0.00 0.00 2.29
5610 6181 5.586243 ACAACCAATGACACTGCTATATGTC 59.414 40.000 0.00 0.00 44.56 3.06
5617 6188 5.679734 GACACTGCTATATGTCAATTGGG 57.320 43.478 5.42 0.00 43.89 4.12
5618 6189 3.885297 ACACTGCTATATGTCAATTGGGC 59.115 43.478 5.42 0.00 0.00 5.36
5619 6190 3.254166 CACTGCTATATGTCAATTGGGCC 59.746 47.826 5.42 0.00 0.00 5.80
5620 6191 3.117550 ACTGCTATATGTCAATTGGGCCA 60.118 43.478 0.00 0.00 0.00 5.36
5621 6192 3.890756 CTGCTATATGTCAATTGGGCCAA 59.109 43.478 23.33 23.33 0.00 4.52
5622 6193 4.482030 TGCTATATGTCAATTGGGCCAAT 58.518 39.130 25.94 25.94 35.39 3.16
5623 6194 4.900652 TGCTATATGTCAATTGGGCCAATT 59.099 37.500 33.47 33.47 43.71 2.32
5637 6208 2.503775 CAATTGGATTGGGGGTCGG 58.496 57.895 0.00 0.00 36.63 4.79
5638 6209 1.042559 CAATTGGATTGGGGGTCGGG 61.043 60.000 0.00 0.00 36.63 5.14
5639 6210 2.236959 AATTGGATTGGGGGTCGGGG 62.237 60.000 0.00 0.00 0.00 5.73
5666 6237 3.532155 GGAGCCTCTCACGCCGAT 61.532 66.667 0.00 0.00 31.08 4.18
5667 6238 2.496817 GAGCCTCTCACGCCGATT 59.503 61.111 0.00 0.00 0.00 3.34
5668 6239 1.734137 GAGCCTCTCACGCCGATTA 59.266 57.895 0.00 0.00 0.00 1.75
5669 6240 0.318275 GAGCCTCTCACGCCGATTAG 60.318 60.000 0.00 0.00 0.00 1.73
5670 6241 0.752009 AGCCTCTCACGCCGATTAGA 60.752 55.000 0.00 0.00 0.00 2.10
5671 6242 0.595310 GCCTCTCACGCCGATTAGAC 60.595 60.000 0.00 0.00 0.00 2.59
5672 6243 0.030908 CCTCTCACGCCGATTAGACC 59.969 60.000 0.00 0.00 0.00 3.85
5673 6244 1.025812 CTCTCACGCCGATTAGACCT 58.974 55.000 0.00 0.00 0.00 3.85
5674 6245 2.219458 CTCTCACGCCGATTAGACCTA 58.781 52.381 0.00 0.00 0.00 3.08
5675 6246 2.617308 CTCTCACGCCGATTAGACCTAA 59.383 50.000 0.00 0.00 0.00 2.69
5676 6247 2.617308 TCTCACGCCGATTAGACCTAAG 59.383 50.000 0.00 0.00 0.00 2.18
5677 6248 2.358267 CTCACGCCGATTAGACCTAAGT 59.642 50.000 0.00 0.00 0.00 2.24
5678 6249 3.544684 TCACGCCGATTAGACCTAAGTA 58.455 45.455 0.00 0.00 0.00 2.24
5679 6250 3.947196 TCACGCCGATTAGACCTAAGTAA 59.053 43.478 0.00 0.00 0.00 2.24
5680 6251 4.581824 TCACGCCGATTAGACCTAAGTAAT 59.418 41.667 0.00 0.00 0.00 1.89
5681 6252 4.680110 CACGCCGATTAGACCTAAGTAATG 59.320 45.833 0.00 0.00 0.00 1.90
5682 6253 4.581824 ACGCCGATTAGACCTAAGTAATGA 59.418 41.667 0.00 0.00 0.00 2.57
5683 6254 4.916249 CGCCGATTAGACCTAAGTAATGAC 59.084 45.833 0.00 0.00 0.00 3.06
5684 6255 5.278364 CGCCGATTAGACCTAAGTAATGACT 60.278 44.000 0.00 0.00 37.59 3.41
5686 6257 6.421202 GCCGATTAGACCTAAGTAATGACTTG 59.579 42.308 5.64 0.00 45.74 3.16
5687 6258 6.924060 CCGATTAGACCTAAGTAATGACTTGG 59.076 42.308 5.64 2.29 45.74 3.61
5688 6259 7.201884 CCGATTAGACCTAAGTAATGACTTGGA 60.202 40.741 7.88 0.00 44.71 3.53
5689 6260 7.648510 CGATTAGACCTAAGTAATGACTTGGAC 59.351 40.741 7.88 6.79 44.71 4.02
5690 6261 5.678955 AGACCTAAGTAATGACTTGGACC 57.321 43.478 7.88 0.00 44.71 4.46
5691 6262 4.159879 AGACCTAAGTAATGACTTGGACCG 59.840 45.833 7.88 0.00 44.71 4.79
5692 6263 3.195661 CCTAAGTAATGACTTGGACCGC 58.804 50.000 7.88 0.00 44.71 5.68
5693 6264 2.109425 AAGTAATGACTTGGACCGCC 57.891 50.000 0.00 0.00 44.50 6.13
5694 6265 1.276622 AGTAATGACTTGGACCGCCT 58.723 50.000 0.00 0.00 28.61 5.52
5695 6266 1.207329 AGTAATGACTTGGACCGCCTC 59.793 52.381 0.00 0.00 28.61 4.70
5696 6267 1.066430 GTAATGACTTGGACCGCCTCA 60.066 52.381 0.00 0.00 34.31 3.86
5697 6268 0.620556 AATGACTTGGACCGCCTCAT 59.379 50.000 0.00 0.00 30.31 2.90
5698 6269 0.179000 ATGACTTGGACCGCCTCATC 59.821 55.000 0.00 0.00 34.31 2.92
5699 6270 1.191489 TGACTTGGACCGCCTCATCA 61.191 55.000 0.00 0.00 34.31 3.07
5700 6271 0.179000 GACTTGGACCGCCTCATCAT 59.821 55.000 0.00 0.00 34.31 2.45
5701 6272 0.179000 ACTTGGACCGCCTCATCATC 59.821 55.000 0.00 0.00 34.31 2.92
5702 6273 0.877649 CTTGGACCGCCTCATCATCG 60.878 60.000 0.00 0.00 34.31 3.84
5703 6274 2.663188 GGACCGCCTCATCATCGC 60.663 66.667 0.00 0.00 0.00 4.58
5704 6275 2.106938 GACCGCCTCATCATCGCA 59.893 61.111 0.00 0.00 0.00 5.10
5705 6276 1.521457 GACCGCCTCATCATCGCAA 60.521 57.895 0.00 0.00 0.00 4.85
5706 6277 1.766143 GACCGCCTCATCATCGCAAC 61.766 60.000 0.00 0.00 0.00 4.17
5707 6278 2.537560 CCGCCTCATCATCGCAACC 61.538 63.158 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
222 223 2.086054 AAGTGAATGTCCAGCTCGAC 57.914 50.000 4.30 4.30 0.00 4.20
337 338 3.463944 GAACGAAACTCCTCAAAGGTGA 58.536 45.455 2.26 0.00 36.53 4.02
439 441 4.993705 ATACAAGGAAAACAGGAGGTGA 57.006 40.909 0.00 0.00 0.00 4.02
475 477 8.159447 ACACGTATATATAAGTACAGAGGTGGA 58.841 37.037 10.46 0.00 0.00 4.02
557 559 2.025605 TCACTACTACAGTCCGTGGGAT 60.026 50.000 10.17 0.00 34.26 3.85
564 566 3.362706 TCCACCATCACTACTACAGTCC 58.637 50.000 0.00 0.00 34.26 3.85
565 567 5.401531 TTTCCACCATCACTACTACAGTC 57.598 43.478 0.00 0.00 34.26 3.51
566 568 5.818678 TTTTCCACCATCACTACTACAGT 57.181 39.130 0.00 0.00 38.32 3.55
567 569 5.120208 CGTTTTTCCACCATCACTACTACAG 59.880 44.000 0.00 0.00 0.00 2.74
568 570 4.992319 CGTTTTTCCACCATCACTACTACA 59.008 41.667 0.00 0.00 0.00 2.74
569 571 4.992951 ACGTTTTTCCACCATCACTACTAC 59.007 41.667 0.00 0.00 0.00 2.73
570 572 5.217978 ACGTTTTTCCACCATCACTACTA 57.782 39.130 0.00 0.00 0.00 1.82
571 573 4.081322 ACGTTTTTCCACCATCACTACT 57.919 40.909 0.00 0.00 0.00 2.57
572 574 5.640357 TGATACGTTTTTCCACCATCACTAC 59.360 40.000 0.00 0.00 0.00 2.73
573 575 5.795972 TGATACGTTTTTCCACCATCACTA 58.204 37.500 0.00 0.00 0.00 2.74
620 622 2.096516 GGAGCAAGCGATCGATGAATTC 60.097 50.000 21.57 13.77 0.00 2.17
626 628 2.028190 CCGGAGCAAGCGATCGAT 59.972 61.111 21.57 10.64 0.00 3.59
656 658 1.133025 CATCCGAGGCACATTTCAACC 59.867 52.381 0.00 0.00 0.00 3.77
683 685 1.081376 CATACGAGGTCGATCGCCC 60.081 63.158 20.30 15.40 46.60 6.13
684 686 1.081376 CCATACGAGGTCGATCGCC 60.081 63.158 11.09 14.99 46.60 5.54
687 689 1.267261 CTCCACCATACGAGGTCGATC 59.733 57.143 6.35 0.00 40.77 3.69
718 740 8.654215 GCCTAAACTTGTCATTAGTAGTTACAC 58.346 37.037 0.00 0.00 31.06 2.90
764 786 4.333926 TGCAAGTTGGTTGTTTTTATTGGC 59.666 37.500 4.75 0.00 38.55 4.52
774 796 2.024414 GGAGAAGTGCAAGTTGGTTGT 58.976 47.619 4.75 0.00 38.55 3.32
778 800 1.876156 GAGTGGAGAAGTGCAAGTTGG 59.124 52.381 4.75 0.00 0.00 3.77
837 859 2.095718 GGCGTGAGAAATCTGTGGAAAC 60.096 50.000 0.00 0.00 0.00 2.78
856 878 0.681243 AGGGAAATCTCGCTTTGGGC 60.681 55.000 0.00 0.00 41.89 5.36
943 965 5.378332 TCTGATAGGGAAGTGCTAGTACTC 58.622 45.833 14.27 7.74 0.00 2.59
944 966 5.390087 TCTGATAGGGAAGTGCTAGTACT 57.610 43.478 7.78 7.78 0.00 2.73
945 967 5.770663 TCATCTGATAGGGAAGTGCTAGTAC 59.229 44.000 2.24 2.24 0.00 2.73
1002 1024 2.816777 AGAGAGATTTTTCCTGGGGC 57.183 50.000 0.00 0.00 0.00 5.80
1026 1048 2.955660 ACAAAAGGCCACGAATTCAGAA 59.044 40.909 5.01 0.00 0.00 3.02
1164 1204 6.494666 TGGGAAGAAGAACAAGTAGAGAAA 57.505 37.500 0.00 0.00 0.00 2.52
1173 1213 1.821216 GGCGATGGGAAGAAGAACAA 58.179 50.000 0.00 0.00 0.00 2.83
1206 1246 3.325293 ACTACCATTGCTCTCACACTG 57.675 47.619 0.00 0.00 0.00 3.66
1353 1402 0.537188 TCAGCTCGGGGTCAAGAATC 59.463 55.000 0.00 0.00 0.00 2.52
1428 1477 0.753479 TCGAGCAGGAGAGATGGGTC 60.753 60.000 0.00 0.00 0.00 4.46
1443 1492 2.021722 AGCTTCGCTCTAGCTCGAG 58.978 57.895 8.45 8.45 45.52 4.04
1477 1528 2.800250 CCATGCAAAAGAAGGAGGTCT 58.200 47.619 0.00 0.00 0.00 3.85
1481 1532 4.460382 TCTTTAGCCATGCAAAAGAAGGAG 59.540 41.667 7.83 0.00 0.00 3.69
1503 1554 2.477754 GCTACTACACACCGTTGGTTTC 59.522 50.000 0.00 0.00 31.02 2.78
1531 1582 1.585006 GTCCGAAGAGCAAGGACGA 59.415 57.895 0.00 0.00 43.96 4.20
1621 1672 6.971527 AAACATAAATGGACACGATTACGA 57.028 33.333 0.00 0.00 42.66 3.43
1622 1673 7.018826 ACAAAACATAAATGGACACGATTACG 58.981 34.615 0.00 0.00 45.75 3.18
1623 1674 8.736751 AACAAAACATAAATGGACACGATTAC 57.263 30.769 0.00 0.00 0.00 1.89
1717 1768 4.816385 GCTAGTCCTAAAGCATGCATGTTA 59.184 41.667 26.79 16.98 38.63 2.41
1795 1849 2.354259 AGTGCAAGCTAGCTAAAGCAG 58.646 47.619 28.89 13.58 45.30 4.24
1849 1903 6.939627 TGCATCGTTATTAAACTAATCCACG 58.060 36.000 0.00 5.36 36.80 4.94
1887 1941 6.211384 AGAGCCAGTTATAAACCTTTGCAAAT 59.789 34.615 13.23 0.00 0.00 2.32
1932 1987 3.131577 GCAACCACCAACATGATGATGAT 59.868 43.478 4.25 0.00 33.36 2.45
1934 1989 2.417651 GGCAACCACCAACATGATGATG 60.418 50.000 4.25 0.00 35.49 3.07
1939 1994 1.900981 CCGGCAACCACCAACATGA 60.901 57.895 0.00 0.00 0.00 3.07
1957 2021 2.592861 GGGATCTGGCGTGGCATC 60.593 66.667 0.00 0.00 0.00 3.91
2121 2185 9.935682 GTATATGTGTTGTTTAGCTAGTACGTA 57.064 33.333 0.00 0.00 0.00 3.57
2122 2186 8.461222 TGTATATGTGTTGTTTAGCTAGTACGT 58.539 33.333 0.00 0.00 0.00 3.57
2123 2187 8.845942 TGTATATGTGTTGTTTAGCTAGTACG 57.154 34.615 0.00 0.00 0.00 3.67
2124 2188 9.245962 CCTGTATATGTGTTGTTTAGCTAGTAC 57.754 37.037 0.00 0.00 0.00 2.73
2125 2189 7.924412 GCCTGTATATGTGTTGTTTAGCTAGTA 59.076 37.037 0.00 0.00 0.00 1.82
2126 2190 6.761714 GCCTGTATATGTGTTGTTTAGCTAGT 59.238 38.462 0.00 0.00 0.00 2.57
2127 2191 6.761242 TGCCTGTATATGTGTTGTTTAGCTAG 59.239 38.462 0.00 0.00 0.00 3.42
2128 2192 6.645306 TGCCTGTATATGTGTTGTTTAGCTA 58.355 36.000 0.00 0.00 0.00 3.32
2129 2193 5.496556 TGCCTGTATATGTGTTGTTTAGCT 58.503 37.500 0.00 0.00 0.00 3.32
2130 2194 5.811399 TGCCTGTATATGTGTTGTTTAGC 57.189 39.130 0.00 0.00 0.00 3.09
2185 2249 1.506262 GTTTGTGTATGGGGCTGCG 59.494 57.895 0.00 0.00 0.00 5.18
2189 2253 3.428316 CGTTAATGGTTTGTGTATGGGGC 60.428 47.826 0.00 0.00 0.00 5.80
2231 2297 8.428063 AGAGATTATCTCAGTGAAGGTTAATGG 58.572 37.037 22.36 0.00 45.73 3.16
2251 2317 5.651139 CAGTTCACATTCCCATGAAGAGATT 59.349 40.000 0.00 0.00 35.55 2.40
2279 2369 4.574013 GCACCAAATTTCACCAAATCACAA 59.426 37.500 0.00 0.00 30.37 3.33
2285 2375 2.877168 GCATGCACCAAATTTCACCAAA 59.123 40.909 14.21 0.00 0.00 3.28
2318 2408 2.653543 ATGGTACCACCCCTTGTAGA 57.346 50.000 19.09 0.00 37.50 2.59
2346 2436 2.470311 CCCCTTGGGGTTGTACTGA 58.530 57.895 16.51 0.00 42.41 3.41
2543 2633 1.269166 CACCTCGTAGTTGATGTCGC 58.731 55.000 0.00 0.00 0.00 5.19
3178 3284 6.118170 ACACCAGCATATGATATGATTAGGC 58.882 40.000 16.22 0.00 0.00 3.93
3179 3285 7.436376 CGTACACCAGCATATGATATGATTAGG 59.564 40.741 16.22 10.47 0.00 2.69
3180 3286 7.976175 ACGTACACCAGCATATGATATGATTAG 59.024 37.037 16.22 6.32 0.00 1.73
3181 3287 7.836842 ACGTACACCAGCATATGATATGATTA 58.163 34.615 16.22 0.00 0.00 1.75
3254 3361 5.179368 CGCCTGAAAATATCACACGGATAAT 59.821 40.000 0.00 0.00 41.66 1.28
3332 3439 2.125350 GCCTCAAGCTCCTCCACG 60.125 66.667 0.00 0.00 38.99 4.94
3490 3615 2.758979 CGCCTTTTGGTCCTAGACTAGA 59.241 50.000 11.27 0.00 42.99 2.43
3491 3616 2.758979 TCGCCTTTTGGTCCTAGACTAG 59.241 50.000 2.18 2.18 42.99 2.57
3492 3617 2.811410 TCGCCTTTTGGTCCTAGACTA 58.189 47.619 0.00 0.00 42.99 2.59
3493 3618 1.640917 TCGCCTTTTGGTCCTAGACT 58.359 50.000 0.00 0.00 42.99 3.24
3494 3619 2.552031 GATCGCCTTTTGGTCCTAGAC 58.448 52.381 0.00 0.00 42.99 2.59
3526 3651 1.076332 CAAGGCAAGGCAGTACGTAC 58.924 55.000 18.10 18.10 0.00 3.67
3575 3700 4.345257 AGGATAACACATACTACTGGCTGG 59.655 45.833 0.00 0.00 0.00 4.85
3605 3730 1.080772 CGCGCCGGATAAGATAGCA 60.081 57.895 5.05 0.00 0.00 3.49
3664 3789 2.767505 ACGGAGTAGAAAAGGCACAAG 58.232 47.619 0.00 0.00 41.94 3.16
3715 3840 2.584418 CATGACGCCGAGCTGAGG 60.584 66.667 0.00 0.00 0.00 3.86
3745 3870 8.035984 AGTCTAGTTTTCTAAGCTGTAATGGAC 58.964 37.037 0.00 0.00 31.45 4.02
3806 3931 2.224161 CCTAGCTAGATTGGAGGTGTGC 60.224 54.545 22.70 0.00 0.00 4.57
3807 3932 2.224161 GCCTAGCTAGATTGGAGGTGTG 60.224 54.545 22.70 1.74 0.00 3.82
3808 3933 2.043227 GCCTAGCTAGATTGGAGGTGT 58.957 52.381 22.70 0.00 0.00 4.16
3811 3936 1.899142 GGAGCCTAGCTAGATTGGAGG 59.101 57.143 22.70 7.23 39.88 4.30
3812 3937 2.603021 TGGAGCCTAGCTAGATTGGAG 58.397 52.381 22.70 5.22 39.88 3.86
3813 3938 2.700897 GTTGGAGCCTAGCTAGATTGGA 59.299 50.000 22.70 0.10 39.88 3.53
3814 3939 2.703007 AGTTGGAGCCTAGCTAGATTGG 59.297 50.000 22.70 7.37 39.88 3.16
3817 3942 3.320610 TCAGTTGGAGCCTAGCTAGAT 57.679 47.619 22.70 10.17 39.88 1.98
3818 3943 2.761208 GTTCAGTTGGAGCCTAGCTAGA 59.239 50.000 22.70 0.00 39.88 2.43
3819 3944 2.763448 AGTTCAGTTGGAGCCTAGCTAG 59.237 50.000 14.20 14.20 39.88 3.42
3820 3945 2.497675 CAGTTCAGTTGGAGCCTAGCTA 59.502 50.000 0.00 0.00 39.88 3.32
3821 3946 1.277557 CAGTTCAGTTGGAGCCTAGCT 59.722 52.381 0.00 0.00 43.88 3.32
3822 3947 1.677217 CCAGTTCAGTTGGAGCCTAGC 60.677 57.143 0.00 0.00 37.96 3.42
3842 3973 5.796350 AACGATCTATTGTTAGGTTGCAC 57.204 39.130 0.00 0.00 32.76 4.57
3877 4022 7.309194 GCTTACAAAAGGGAACAGACATTATGT 60.309 37.037 0.00 0.00 32.98 2.29
3886 4031 2.616842 ACACGCTTACAAAAGGGAACAG 59.383 45.455 8.91 0.21 45.94 3.16
3903 4048 1.733912 CCATGAACTCATCACCACACG 59.266 52.381 0.00 0.00 41.93 4.49
3922 4067 5.139435 ACAAGTTAGTCCGGTACTTAACC 57.861 43.478 11.09 0.00 45.77 2.85
3928 4073 5.232463 TGATGAAACAAGTTAGTCCGGTAC 58.768 41.667 0.00 0.00 0.00 3.34
3933 4078 4.154918 CAGCCTGATGAAACAAGTTAGTCC 59.845 45.833 0.00 0.00 0.00 3.85
4236 4381 7.857885 GCGTGAGAAATAATGAATTTAAGGGAG 59.142 37.037 0.00 0.00 37.93 4.30
4272 4417 1.999735 TCAACGCTAGCTAATGTGTGC 59.000 47.619 13.93 0.00 0.00 4.57
4296 4441 1.270550 CGAGCAAAGAAGCCCAACATT 59.729 47.619 0.00 0.00 34.23 2.71
4313 4458 1.081892 CAAAGATGACCTGCACCGAG 58.918 55.000 0.00 0.00 0.00 4.63
4461 4606 9.661563 AGTACGAATGATCCATTTGTTAACTTA 57.338 29.630 15.31 0.00 43.49 2.24
4467 4612 7.630242 AATCAGTACGAATGATCCATTTGTT 57.370 32.000 15.31 0.00 43.49 2.83
4483 4628 6.267496 AGTATGGGCAAACAAAATCAGTAC 57.733 37.500 0.00 0.00 0.00 2.73
4493 4639 4.072131 GACAGAGAAAGTATGGGCAAACA 58.928 43.478 0.00 0.00 0.00 2.83
4505 4651 6.142818 ACCGATCAATCTAGACAGAGAAAG 57.857 41.667 0.00 0.00 33.22 2.62
4581 4729 0.387929 CTAGGGCGAGCGTTGGATAA 59.612 55.000 0.00 0.00 0.00 1.75
4714 5118 2.616510 GCCTGCATGTAGATATCCACCC 60.617 54.545 12.93 0.00 0.00 4.61
4721 5125 6.016555 TGTATAGGAAGCCTGCATGTAGATA 58.983 40.000 12.93 0.00 34.61 1.98
4722 5126 4.840680 TGTATAGGAAGCCTGCATGTAGAT 59.159 41.667 12.93 0.00 34.61 1.98
4766 5170 5.763204 TCACCAGAGACCAATTTAACAGAAC 59.237 40.000 0.00 0.00 0.00 3.01
4780 5184 4.074970 ACCAATCATGTTTCACCAGAGAC 58.925 43.478 0.00 0.00 0.00 3.36
4794 5198 2.168521 CGTACCCTCACAGACCAATCAT 59.831 50.000 0.00 0.00 0.00 2.45
4799 5203 2.097036 CATACGTACCCTCACAGACCA 58.903 52.381 0.00 0.00 0.00 4.02
4801 5205 3.243002 GCTACATACGTACCCTCACAGAC 60.243 52.174 0.00 0.00 0.00 3.51
4805 5209 3.501445 CCTAGCTACATACGTACCCTCAC 59.499 52.174 0.00 0.00 0.00 3.51
4806 5210 3.137176 ACCTAGCTACATACGTACCCTCA 59.863 47.826 0.00 0.00 0.00 3.86
4818 5222 2.559668 ACTACGTGCAAACCTAGCTACA 59.440 45.455 0.00 0.00 0.00 2.74
4898 5302 1.596752 ACCAATGCGCACGACAGAA 60.597 52.632 14.90 0.00 0.00 3.02
4938 5342 2.152016 ACCTTGGAAGCTAAAACTCGC 58.848 47.619 0.00 0.00 0.00 5.03
4949 5353 2.038295 AGAGAGAGTGCAACCTTGGAAG 59.962 50.000 0.00 0.00 37.80 3.46
4976 5380 8.465273 AACCTTTCCTTTACTGATATAATGGC 57.535 34.615 0.00 0.00 32.09 4.40
4987 5391 8.073467 TCACAAAAATGAACCTTTCCTTTACT 57.927 30.769 0.00 0.00 29.26 2.24
4988 5392 8.710835 TTCACAAAAATGAACCTTTCCTTTAC 57.289 30.769 0.00 0.00 33.62 2.01
5011 5415 0.034896 ACCCGGCGATGGTCATATTC 59.965 55.000 9.30 0.00 0.00 1.75
5035 5439 4.470304 GGTTGTAGGGTTTAGAGACCAGAT 59.530 45.833 0.00 0.00 41.65 2.90
5069 5473 9.796120 AATTAAATAATGTAAACGTCATGGGTG 57.204 29.630 0.00 0.00 0.00 4.61
5274 5685 8.768957 ATACATTGATGCTACTACTTGCTATG 57.231 34.615 0.00 0.00 0.00 2.23
5277 5688 6.820335 TGATACATTGATGCTACTACTTGCT 58.180 36.000 0.00 0.00 0.00 3.91
5279 5690 7.172019 TGCATGATACATTGATGCTACTACTTG 59.828 37.037 0.00 0.00 42.50 3.16
5282 5693 7.461918 CATGCATGATACATTGATGCTACTAC 58.538 38.462 22.59 0.00 42.50 2.73
5341 5752 8.827177 AATATGCTCTTCATTTAATGGCATTG 57.173 30.769 22.57 6.77 36.87 2.82
5360 5771 4.271049 ACAGTGACACATCGCTTAATATGC 59.729 41.667 8.59 0.00 43.38 3.14
5385 5796 4.152045 ACACATTTATTGTTTTGCATGGCG 59.848 37.500 0.00 0.00 36.00 5.69
5418 5829 8.404107 TGCAGTGCATAGTATCTATGTTAGTA 57.596 34.615 15.37 0.00 31.71 1.82
5419 5830 7.290110 TGCAGTGCATAGTATCTATGTTAGT 57.710 36.000 15.37 7.64 31.71 2.24
5420 5831 8.593492 TTTGCAGTGCATAGTATCTATGTTAG 57.407 34.615 20.50 7.16 38.76 2.34
5449 6020 6.771749 GGTGGAGTATATCACACACTAGTACT 59.228 42.308 0.00 0.00 37.41 2.73
5450 6021 6.544931 TGGTGGAGTATATCACACACTAGTAC 59.455 42.308 0.00 0.00 37.41 2.73
5451 6022 6.665695 TGGTGGAGTATATCACACACTAGTA 58.334 40.000 0.00 0.00 37.41 1.82
5452 6023 5.516044 TGGTGGAGTATATCACACACTAGT 58.484 41.667 0.00 0.00 37.41 2.57
5453 6024 5.828328 TCTGGTGGAGTATATCACACACTAG 59.172 44.000 0.00 0.00 42.23 2.57
5454 6025 5.762279 TCTGGTGGAGTATATCACACACTA 58.238 41.667 0.00 0.00 37.41 2.74
5455 6026 4.610333 TCTGGTGGAGTATATCACACACT 58.390 43.478 0.00 0.00 37.41 3.55
5456 6027 5.105310 ACTTCTGGTGGAGTATATCACACAC 60.105 44.000 0.00 0.00 36.87 3.82
5457 6028 5.023452 ACTTCTGGTGGAGTATATCACACA 58.977 41.667 0.00 0.00 35.74 3.72
5458 6029 5.599999 ACTTCTGGTGGAGTATATCACAC 57.400 43.478 0.00 0.00 35.74 3.82
5459 6030 5.302059 GCTACTTCTGGTGGAGTATATCACA 59.698 44.000 0.00 0.00 35.74 3.58
5460 6031 5.279056 GGCTACTTCTGGTGGAGTATATCAC 60.279 48.000 0.00 0.00 0.00 3.06
5461 6032 4.833380 GGCTACTTCTGGTGGAGTATATCA 59.167 45.833 0.00 0.00 0.00 2.15
5462 6033 5.081032 AGGCTACTTCTGGTGGAGTATATC 58.919 45.833 0.00 0.00 0.00 1.63
5463 6034 5.081315 AGGCTACTTCTGGTGGAGTATAT 57.919 43.478 0.00 0.00 0.00 0.86
5464 6035 4.537945 AGGCTACTTCTGGTGGAGTATA 57.462 45.455 0.00 0.00 0.00 1.47
5465 6036 3.406512 AGGCTACTTCTGGTGGAGTAT 57.593 47.619 0.00 0.00 0.00 2.12
5466 6037 2.921834 AGGCTACTTCTGGTGGAGTA 57.078 50.000 0.00 0.00 0.00 2.59
5467 6038 2.031495 AAGGCTACTTCTGGTGGAGT 57.969 50.000 0.00 0.00 28.54 3.85
5468 6039 3.366396 TCTAAGGCTACTTCTGGTGGAG 58.634 50.000 0.00 0.00 38.14 3.86
5469 6040 3.468071 TCTAAGGCTACTTCTGGTGGA 57.532 47.619 0.00 0.00 38.14 4.02
5470 6041 4.553330 TTTCTAAGGCTACTTCTGGTGG 57.447 45.455 0.00 0.00 38.14 4.61
5471 6042 5.412904 CCTTTTTCTAAGGCTACTTCTGGTG 59.587 44.000 0.00 0.00 38.14 4.17
5472 6043 5.309806 TCCTTTTTCTAAGGCTACTTCTGGT 59.690 40.000 0.00 0.00 38.14 4.00
5473 6044 5.644206 GTCCTTTTTCTAAGGCTACTTCTGG 59.356 44.000 0.00 0.00 38.14 3.86
5474 6045 5.644206 GGTCCTTTTTCTAAGGCTACTTCTG 59.356 44.000 0.00 0.00 38.14 3.02
5475 6046 5.280573 GGGTCCTTTTTCTAAGGCTACTTCT 60.281 44.000 0.00 0.00 38.14 2.85
5476 6047 4.942483 GGGTCCTTTTTCTAAGGCTACTTC 59.058 45.833 0.00 0.00 38.14 3.01
5477 6048 4.352893 TGGGTCCTTTTTCTAAGGCTACTT 59.647 41.667 0.00 0.00 40.74 2.24
5478 6049 3.914435 TGGGTCCTTTTTCTAAGGCTACT 59.086 43.478 0.00 0.00 37.34 2.57
5479 6050 4.296621 TGGGTCCTTTTTCTAAGGCTAC 57.703 45.455 0.00 0.00 37.34 3.58
5480 6051 5.327737 TTTGGGTCCTTTTTCTAAGGCTA 57.672 39.130 0.00 0.00 37.34 3.93
5481 6052 3.895704 TTGGGTCCTTTTTCTAAGGCT 57.104 42.857 0.00 0.00 37.34 4.58
5482 6053 4.820897 CATTTGGGTCCTTTTTCTAAGGC 58.179 43.478 0.00 0.00 37.34 4.35
5483 6054 4.283212 TGCATTTGGGTCCTTTTTCTAAGG 59.717 41.667 0.00 0.00 38.78 2.69
5484 6055 5.467035 TGCATTTGGGTCCTTTTTCTAAG 57.533 39.130 0.00 0.00 0.00 2.18
5485 6056 5.878406 TTGCATTTGGGTCCTTTTTCTAA 57.122 34.783 0.00 0.00 0.00 2.10
5486 6057 5.600484 TCTTTGCATTTGGGTCCTTTTTCTA 59.400 36.000 0.00 0.00 0.00 2.10
5487 6058 4.408596 TCTTTGCATTTGGGTCCTTTTTCT 59.591 37.500 0.00 0.00 0.00 2.52
5488 6059 4.511454 GTCTTTGCATTTGGGTCCTTTTTC 59.489 41.667 0.00 0.00 0.00 2.29
5489 6060 4.164030 AGTCTTTGCATTTGGGTCCTTTTT 59.836 37.500 0.00 0.00 0.00 1.94
5490 6061 3.711190 AGTCTTTGCATTTGGGTCCTTTT 59.289 39.130 0.00 0.00 0.00 2.27
5491 6062 3.308401 AGTCTTTGCATTTGGGTCCTTT 58.692 40.909 0.00 0.00 0.00 3.11
5492 6063 2.962859 AGTCTTTGCATTTGGGTCCTT 58.037 42.857 0.00 0.00 0.00 3.36
5493 6064 2.629617 CAAGTCTTTGCATTTGGGTCCT 59.370 45.455 0.00 0.00 0.00 3.85
5494 6065 2.627699 TCAAGTCTTTGCATTTGGGTCC 59.372 45.455 0.00 0.00 34.21 4.46
5495 6066 3.068024 TGTCAAGTCTTTGCATTTGGGTC 59.932 43.478 0.00 0.00 34.21 4.46
5496 6067 3.030291 TGTCAAGTCTTTGCATTTGGGT 58.970 40.909 0.00 0.00 34.21 4.51
5497 6068 3.645884 CTGTCAAGTCTTTGCATTTGGG 58.354 45.455 0.00 0.00 34.21 4.12
5498 6069 3.054878 GCTGTCAAGTCTTTGCATTTGG 58.945 45.455 0.00 0.00 34.21 3.28
5499 6070 3.708890 TGCTGTCAAGTCTTTGCATTTG 58.291 40.909 0.00 0.00 34.21 2.32
5500 6071 4.389890 TTGCTGTCAAGTCTTTGCATTT 57.610 36.364 0.00 0.00 34.21 2.32
5501 6072 4.389890 TTTGCTGTCAAGTCTTTGCATT 57.610 36.364 0.00 0.00 34.21 3.56
5502 6073 4.389890 TTTTGCTGTCAAGTCTTTGCAT 57.610 36.364 0.00 0.00 34.21 3.96
5503 6074 3.865011 TTTTGCTGTCAAGTCTTTGCA 57.135 38.095 0.00 0.00 34.21 4.08
5504 6075 5.979517 ACTTATTTTGCTGTCAAGTCTTTGC 59.020 36.000 0.00 0.00 34.21 3.68
5505 6076 8.559536 TCTACTTATTTTGCTGTCAAGTCTTTG 58.440 33.333 0.00 0.00 33.12 2.77
5506 6077 8.560374 GTCTACTTATTTTGCTGTCAAGTCTTT 58.440 33.333 0.00 0.00 33.12 2.52
5507 6078 7.715249 TGTCTACTTATTTTGCTGTCAAGTCTT 59.285 33.333 0.00 0.00 33.12 3.01
5508 6079 7.217200 TGTCTACTTATTTTGCTGTCAAGTCT 58.783 34.615 0.00 0.00 33.12 3.24
5509 6080 7.421530 TGTCTACTTATTTTGCTGTCAAGTC 57.578 36.000 0.00 0.00 33.12 3.01
5510 6081 7.801716 TTGTCTACTTATTTTGCTGTCAAGT 57.198 32.000 0.00 0.00 33.12 3.16
5556 6127 3.009723 AGTGGCTCGTGGACAAAATATG 58.990 45.455 0.00 0.00 32.99 1.78
5557 6128 3.350219 AGTGGCTCGTGGACAAAATAT 57.650 42.857 0.00 0.00 32.99 1.28
5558 6129 2.851263 AGTGGCTCGTGGACAAAATA 57.149 45.000 0.00 0.00 32.99 1.40
5559 6130 1.981256 AAGTGGCTCGTGGACAAAAT 58.019 45.000 0.00 0.00 32.99 1.82
5560 6131 1.757682 AAAGTGGCTCGTGGACAAAA 58.242 45.000 0.00 0.00 32.99 2.44
5561 6132 2.623878 TAAAGTGGCTCGTGGACAAA 57.376 45.000 0.00 0.00 32.99 2.83
5562 6133 2.623878 TTAAAGTGGCTCGTGGACAA 57.376 45.000 0.00 0.00 32.99 3.18
5563 6134 2.103432 TCTTTAAAGTGGCTCGTGGACA 59.897 45.455 14.74 0.00 0.00 4.02
5564 6135 2.762745 TCTTTAAAGTGGCTCGTGGAC 58.237 47.619 14.74 0.00 0.00 4.02
5565 6136 3.695830 ATCTTTAAAGTGGCTCGTGGA 57.304 42.857 14.74 0.00 0.00 4.02
5566 6137 4.250464 TGTATCTTTAAAGTGGCTCGTGG 58.750 43.478 14.74 0.00 0.00 4.94
5567 6138 5.390567 GGTTGTATCTTTAAAGTGGCTCGTG 60.391 44.000 14.74 0.00 0.00 4.35
5568 6139 4.694037 GGTTGTATCTTTAAAGTGGCTCGT 59.306 41.667 14.74 0.00 0.00 4.18
5569 6140 4.693566 TGGTTGTATCTTTAAAGTGGCTCG 59.306 41.667 14.74 0.00 0.00 5.03
5570 6141 6.569179 TTGGTTGTATCTTTAAAGTGGCTC 57.431 37.500 14.74 4.06 0.00 4.70
5571 6142 6.719370 TCATTGGTTGTATCTTTAAAGTGGCT 59.281 34.615 14.74 2.17 0.00 4.75
5572 6143 6.806739 GTCATTGGTTGTATCTTTAAAGTGGC 59.193 38.462 14.74 6.85 0.00 5.01
5573 6144 7.807907 GTGTCATTGGTTGTATCTTTAAAGTGG 59.192 37.037 14.74 0.00 0.00 4.00
5574 6145 8.567948 AGTGTCATTGGTTGTATCTTTAAAGTG 58.432 33.333 14.74 2.45 0.00 3.16
5575 6146 8.567948 CAGTGTCATTGGTTGTATCTTTAAAGT 58.432 33.333 14.74 5.49 0.00 2.66
5576 6147 7.538678 GCAGTGTCATTGGTTGTATCTTTAAAG 59.461 37.037 9.04 9.04 0.00 1.85
5577 6148 7.230510 AGCAGTGTCATTGGTTGTATCTTTAAA 59.769 33.333 0.00 0.00 0.00 1.52
5578 6149 6.714810 AGCAGTGTCATTGGTTGTATCTTTAA 59.285 34.615 0.00 0.00 0.00 1.52
5579 6150 6.237901 AGCAGTGTCATTGGTTGTATCTTTA 58.762 36.000 0.00 0.00 0.00 1.85
5580 6151 5.072741 AGCAGTGTCATTGGTTGTATCTTT 58.927 37.500 0.00 0.00 0.00 2.52
5581 6152 4.655963 AGCAGTGTCATTGGTTGTATCTT 58.344 39.130 0.00 0.00 0.00 2.40
5582 6153 4.292186 AGCAGTGTCATTGGTTGTATCT 57.708 40.909 0.00 0.00 0.00 1.98
5583 6154 7.442364 ACATATAGCAGTGTCATTGGTTGTATC 59.558 37.037 5.30 0.00 0.00 2.24
5584 6155 7.282585 ACATATAGCAGTGTCATTGGTTGTAT 58.717 34.615 5.30 3.13 0.00 2.29
5585 6156 6.649155 ACATATAGCAGTGTCATTGGTTGTA 58.351 36.000 5.30 1.03 0.00 2.41
5586 6157 5.500234 ACATATAGCAGTGTCATTGGTTGT 58.500 37.500 5.30 1.91 0.00 3.32
5587 6158 5.585844 TGACATATAGCAGTGTCATTGGTTG 59.414 40.000 5.30 1.31 46.97 3.77
5588 6159 5.744171 TGACATATAGCAGTGTCATTGGTT 58.256 37.500 5.30 0.00 46.97 3.67
5589 6160 5.357742 TGACATATAGCAGTGTCATTGGT 57.642 39.130 5.33 5.33 46.97 3.67
5595 6166 4.023707 GCCCAATTGACATATAGCAGTGTC 60.024 45.833 7.12 0.00 43.81 3.67
5596 6167 3.885297 GCCCAATTGACATATAGCAGTGT 59.115 43.478 7.12 0.00 0.00 3.55
5597 6168 3.254166 GGCCCAATTGACATATAGCAGTG 59.746 47.826 7.12 0.00 0.00 3.66
5598 6169 3.117550 TGGCCCAATTGACATATAGCAGT 60.118 43.478 7.12 0.00 0.00 4.40
5599 6170 3.489355 TGGCCCAATTGACATATAGCAG 58.511 45.455 7.12 0.00 0.00 4.24
5600 6171 3.591695 TGGCCCAATTGACATATAGCA 57.408 42.857 7.12 0.00 0.00 3.49
5601 6172 5.473066 AATTGGCCCAATTGACATATAGC 57.527 39.130 20.69 0.00 41.70 2.97
5619 6190 1.042559 CCCGACCCCCAATCCAATTG 61.043 60.000 0.00 0.00 39.94 2.32
5620 6191 1.309688 CCCGACCCCCAATCCAATT 59.690 57.895 0.00 0.00 0.00 2.32
5621 6192 2.700185 CCCCGACCCCCAATCCAAT 61.700 63.158 0.00 0.00 0.00 3.16
5622 6193 3.343326 CCCCGACCCCCAATCCAA 61.343 66.667 0.00 0.00 0.00 3.53
5649 6220 1.735376 TAATCGGCGTGAGAGGCTCC 61.735 60.000 11.71 3.35 34.19 4.70
5650 6221 0.318275 CTAATCGGCGTGAGAGGCTC 60.318 60.000 6.34 6.34 34.19 4.70
5651 6222 0.752009 TCTAATCGGCGTGAGAGGCT 60.752 55.000 6.85 0.00 34.19 4.58
5652 6223 0.595310 GTCTAATCGGCGTGAGAGGC 60.595 60.000 6.85 0.00 0.00 4.70
5653 6224 0.030908 GGTCTAATCGGCGTGAGAGG 59.969 60.000 6.85 0.00 0.00 3.69
5654 6225 1.025812 AGGTCTAATCGGCGTGAGAG 58.974 55.000 6.85 0.47 0.00 3.20
5655 6226 2.336945 TAGGTCTAATCGGCGTGAGA 57.663 50.000 6.85 5.40 0.00 3.27
5656 6227 2.358267 ACTTAGGTCTAATCGGCGTGAG 59.642 50.000 6.85 2.81 0.00 3.51
5657 6228 2.372264 ACTTAGGTCTAATCGGCGTGA 58.628 47.619 6.85 0.00 0.00 4.35
5658 6229 2.865343 ACTTAGGTCTAATCGGCGTG 57.135 50.000 6.85 0.00 0.00 5.34
5659 6230 4.581824 TCATTACTTAGGTCTAATCGGCGT 59.418 41.667 6.85 0.00 0.00 5.68
5660 6231 4.916249 GTCATTACTTAGGTCTAATCGGCG 59.084 45.833 0.00 0.00 0.00 6.46
5661 6232 6.086785 AGTCATTACTTAGGTCTAATCGGC 57.913 41.667 0.00 0.00 29.00 5.54
5662 6233 6.924060 CCAAGTCATTACTTAGGTCTAATCGG 59.076 42.308 0.00 0.00 44.28 4.18
5663 6234 7.648510 GTCCAAGTCATTACTTAGGTCTAATCG 59.351 40.741 0.00 0.00 44.28 3.34
5664 6235 7.927092 GGTCCAAGTCATTACTTAGGTCTAATC 59.073 40.741 0.00 0.00 44.28 1.75
5665 6236 7.417570 CGGTCCAAGTCATTACTTAGGTCTAAT 60.418 40.741 0.00 0.00 44.28 1.73
5666 6237 6.127535 CGGTCCAAGTCATTACTTAGGTCTAA 60.128 42.308 0.00 0.00 44.28 2.10
5667 6238 5.359009 CGGTCCAAGTCATTACTTAGGTCTA 59.641 44.000 0.00 0.00 44.28 2.59
5668 6239 4.159879 CGGTCCAAGTCATTACTTAGGTCT 59.840 45.833 0.00 0.00 44.28 3.85
5669 6240 4.430908 CGGTCCAAGTCATTACTTAGGTC 58.569 47.826 0.00 0.00 44.28 3.85
5670 6241 3.369157 GCGGTCCAAGTCATTACTTAGGT 60.369 47.826 0.00 0.00 44.28 3.08
5671 6242 3.195661 GCGGTCCAAGTCATTACTTAGG 58.804 50.000 0.00 0.00 44.28 2.69
5672 6243 3.118738 AGGCGGTCCAAGTCATTACTTAG 60.119 47.826 0.00 0.00 44.28 2.18
5673 6244 2.835764 AGGCGGTCCAAGTCATTACTTA 59.164 45.455 0.00 0.00 44.28 2.24
5675 6246 1.207329 GAGGCGGTCCAAGTCATTACT 59.793 52.381 0.00 0.00 37.65 2.24
5676 6247 1.066430 TGAGGCGGTCCAAGTCATTAC 60.066 52.381 0.00 0.00 33.74 1.89
5677 6248 1.271856 TGAGGCGGTCCAAGTCATTA 58.728 50.000 0.00 0.00 33.74 1.90
5678 6249 0.620556 ATGAGGCGGTCCAAGTCATT 59.379 50.000 0.00 0.00 33.74 2.57
5679 6250 0.179000 GATGAGGCGGTCCAAGTCAT 59.821 55.000 0.00 0.00 30.20 3.06
5680 6251 1.191489 TGATGAGGCGGTCCAAGTCA 61.191 55.000 0.00 0.00 33.74 3.41
5681 6252 0.179000 ATGATGAGGCGGTCCAAGTC 59.821 55.000 0.00 0.00 33.74 3.01
5682 6253 0.179000 GATGATGAGGCGGTCCAAGT 59.821 55.000 0.00 0.00 33.74 3.16
5683 6254 0.877649 CGATGATGAGGCGGTCCAAG 60.878 60.000 0.00 0.00 33.74 3.61
5684 6255 1.143838 CGATGATGAGGCGGTCCAA 59.856 57.895 0.00 0.00 33.74 3.53
5685 6256 2.814604 CGATGATGAGGCGGTCCA 59.185 61.111 0.00 0.00 33.74 4.02
5686 6257 2.663188 GCGATGATGAGGCGGTCC 60.663 66.667 0.00 0.00 0.00 4.46
5687 6258 1.521457 TTGCGATGATGAGGCGGTC 60.521 57.895 0.00 0.00 0.00 4.79
5688 6259 1.815421 GTTGCGATGATGAGGCGGT 60.815 57.895 0.00 0.00 0.00 5.68
5689 6260 2.537560 GGTTGCGATGATGAGGCGG 61.538 63.158 0.00 0.00 0.00 6.13
5690 6261 3.017323 GGTTGCGATGATGAGGCG 58.983 61.111 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.