Multiple sequence alignment - TraesCS2A01G295300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G295300 chr2A 100.000 2528 0 0 1 2528 507718159 507715632 0.000000e+00 4669.0
1 TraesCS2A01G295300 chr2A 92.763 608 44 0 1921 2528 55099974 55100581 0.000000e+00 880.0
2 TraesCS2A01G295300 chr2A 90.476 609 57 1 1921 2528 3275843 3275235 0.000000e+00 802.0
3 TraesCS2A01G295300 chr2A 85.427 199 25 3 1 198 184537002 184536807 1.190000e-48 204.0
4 TraesCS2A01G295300 chr2B 94.655 1216 48 6 642 1846 445695404 445694195 0.000000e+00 1869.0
5 TraesCS2A01G295300 chr2D 92.621 1301 51 19 634 1901 375374334 375373046 0.000000e+00 1829.0
6 TraesCS2A01G295300 chr2D 92.763 608 43 1 1921 2528 334079753 334079147 0.000000e+00 878.0
7 TraesCS2A01G295300 chr6D 93.607 610 38 1 1920 2528 336525055 336525664 0.000000e+00 909.0
8 TraesCS2A01G295300 chr3D 92.434 608 46 0 1921 2528 1662285 1661678 0.000000e+00 869.0
9 TraesCS2A01G295300 chr3D 88.525 183 16 4 1 181 351252862 351252683 1.520000e-52 217.0
10 TraesCS2A01G295300 chr3D 86.567 201 18 6 1 200 175664075 175663883 1.970000e-51 213.0
11 TraesCS2A01G295300 chr6B 91.283 608 51 2 1921 2528 45893408 45894013 0.000000e+00 828.0
12 TraesCS2A01G295300 chr4D 91.461 609 40 7 1921 2528 73323972 73323375 0.000000e+00 826.0
13 TraesCS2A01G295300 chr3B 90.954 608 55 0 1921 2528 4707854 4707247 0.000000e+00 819.0
14 TraesCS2A01G295300 chr7A 90.538 613 46 7 1921 2528 18945904 18946509 0.000000e+00 800.0
15 TraesCS2A01G295300 chr5D 88.500 200 20 3 1 199 296999131 296998934 3.250000e-59 239.0
16 TraesCS2A01G295300 chr5D 88.482 191 13 7 15 199 77747497 77747310 3.270000e-54 222.0
17 TraesCS2A01G295300 chr4B 89.130 184 17 2 1 183 595216263 595216082 2.530000e-55 226.0
18 TraesCS2A01G295300 chr4B 86.500 200 24 2 1 199 526926585 526926782 1.520000e-52 217.0
19 TraesCS2A01G295300 chr7D 83.478 230 37 1 198 426 564170609 564170838 1.970000e-51 213.0
20 TraesCS2A01G295300 chr7D 87.500 184 20 2 1 183 175175274 175175093 2.550000e-50 209.0
21 TraesCS2A01G295300 chr7B 86.294 197 24 3 1 196 436791052 436790858 7.090000e-51 211.0
22 TraesCS2A01G295300 chr5A 80.625 160 27 4 1289 1446 19234803 19234646 1.230000e-23 121.0
23 TraesCS2A01G295300 chr6A 86.441 59 5 2 291 347 487116331 487116388 7.550000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G295300 chr2A 507715632 507718159 2527 True 4669 4669 100.000 1 2528 1 chr2A.!!$R3 2527
1 TraesCS2A01G295300 chr2A 55099974 55100581 607 False 880 880 92.763 1921 2528 1 chr2A.!!$F1 607
2 TraesCS2A01G295300 chr2A 3275235 3275843 608 True 802 802 90.476 1921 2528 1 chr2A.!!$R1 607
3 TraesCS2A01G295300 chr2B 445694195 445695404 1209 True 1869 1869 94.655 642 1846 1 chr2B.!!$R1 1204
4 TraesCS2A01G295300 chr2D 375373046 375374334 1288 True 1829 1829 92.621 634 1901 1 chr2D.!!$R2 1267
5 TraesCS2A01G295300 chr2D 334079147 334079753 606 True 878 878 92.763 1921 2528 1 chr2D.!!$R1 607
6 TraesCS2A01G295300 chr6D 336525055 336525664 609 False 909 909 93.607 1920 2528 1 chr6D.!!$F1 608
7 TraesCS2A01G295300 chr3D 1661678 1662285 607 True 869 869 92.434 1921 2528 1 chr3D.!!$R1 607
8 TraesCS2A01G295300 chr6B 45893408 45894013 605 False 828 828 91.283 1921 2528 1 chr6B.!!$F1 607
9 TraesCS2A01G295300 chr4D 73323375 73323972 597 True 826 826 91.461 1921 2528 1 chr4D.!!$R1 607
10 TraesCS2A01G295300 chr3B 4707247 4707854 607 True 819 819 90.954 1921 2528 1 chr3B.!!$R1 607
11 TraesCS2A01G295300 chr7A 18945904 18946509 605 False 800 800 90.538 1921 2528 1 chr7A.!!$F1 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.107361 GGGGGAGTTATGGACGTTGG 60.107 60.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 1949 0.043485 TGGGGGTAGCCACTGTGATA 59.957 55.0 15.61 0.0 0.0 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.838339 TTAGAATTGAAGAAGAAGAAGAAGTGT 57.162 29.630 0.00 0.00 0.00 3.55
30 31 8.152309 AGAATTGAAGAAGAAGAAGAAGTGTG 57.848 34.615 0.00 0.00 0.00 3.82
31 32 5.741388 TTGAAGAAGAAGAAGAAGTGTGC 57.259 39.130 0.00 0.00 0.00 4.57
32 33 4.769688 TGAAGAAGAAGAAGAAGTGTGCA 58.230 39.130 0.00 0.00 0.00 4.57
33 34 5.185454 TGAAGAAGAAGAAGAAGTGTGCAA 58.815 37.500 0.00 0.00 0.00 4.08
34 35 5.295292 TGAAGAAGAAGAAGAAGTGTGCAAG 59.705 40.000 0.00 0.00 0.00 4.01
35 36 3.563390 AGAAGAAGAAGAAGTGTGCAAGC 59.437 43.478 0.00 0.00 0.00 4.01
36 37 3.205784 AGAAGAAGAAGTGTGCAAGCT 57.794 42.857 0.00 0.00 0.00 3.74
37 38 3.549794 AGAAGAAGAAGTGTGCAAGCTT 58.450 40.909 0.00 0.00 0.00 3.74
38 39 3.314635 AGAAGAAGAAGTGTGCAAGCTTG 59.685 43.478 22.44 22.44 0.00 4.01
39 40 2.923121 AGAAGAAGTGTGCAAGCTTGA 58.077 42.857 30.39 12.25 0.00 3.02
40 41 2.877168 AGAAGAAGTGTGCAAGCTTGAG 59.123 45.455 30.39 4.87 0.00 3.02
41 42 2.627515 AGAAGTGTGCAAGCTTGAGA 57.372 45.000 30.39 12.49 0.00 3.27
42 43 2.923121 AGAAGTGTGCAAGCTTGAGAA 58.077 42.857 30.39 11.55 0.00 2.87
43 44 2.877168 AGAAGTGTGCAAGCTTGAGAAG 59.123 45.455 30.39 3.21 0.00 2.85
51 52 4.215349 GCTTGAGAAGCGGCAGAT 57.785 55.556 1.45 0.00 45.74 2.90
52 53 2.013021 GCTTGAGAAGCGGCAGATC 58.987 57.895 1.45 0.00 45.74 2.75
53 54 0.742281 GCTTGAGAAGCGGCAGATCA 60.742 55.000 1.45 0.00 45.74 2.92
54 55 1.730501 CTTGAGAAGCGGCAGATCAA 58.269 50.000 1.45 8.05 0.00 2.57
55 56 1.396301 CTTGAGAAGCGGCAGATCAAC 59.604 52.381 1.45 0.00 0.00 3.18
56 57 0.321346 TGAGAAGCGGCAGATCAACA 59.679 50.000 1.45 0.33 0.00 3.33
57 58 1.270785 TGAGAAGCGGCAGATCAACAA 60.271 47.619 1.45 0.00 0.00 2.83
58 59 2.012673 GAGAAGCGGCAGATCAACAAT 58.987 47.619 1.45 0.00 0.00 2.71
59 60 1.741706 AGAAGCGGCAGATCAACAATG 59.258 47.619 1.45 0.00 0.00 2.82
60 61 1.739466 GAAGCGGCAGATCAACAATGA 59.261 47.619 1.45 0.00 40.57 2.57
61 62 1.825090 AGCGGCAGATCAACAATGAA 58.175 45.000 1.45 0.00 39.49 2.57
62 63 1.741706 AGCGGCAGATCAACAATGAAG 59.258 47.619 1.45 0.00 39.49 3.02
63 64 1.739466 GCGGCAGATCAACAATGAAGA 59.261 47.619 0.00 0.00 39.49 2.87
64 65 2.476854 GCGGCAGATCAACAATGAAGAC 60.477 50.000 0.00 0.00 39.49 3.01
65 66 2.743664 CGGCAGATCAACAATGAAGACA 59.256 45.455 0.00 0.00 39.49 3.41
66 67 3.376234 CGGCAGATCAACAATGAAGACAT 59.624 43.478 0.00 0.00 39.49 3.06
67 68 4.571984 CGGCAGATCAACAATGAAGACATA 59.428 41.667 0.00 0.00 39.49 2.29
68 69 5.277202 CGGCAGATCAACAATGAAGACATAG 60.277 44.000 0.00 0.00 39.49 2.23
69 70 5.819379 GGCAGATCAACAATGAAGACATAGA 59.181 40.000 0.00 0.00 39.49 1.98
70 71 6.018098 GGCAGATCAACAATGAAGACATAGAG 60.018 42.308 0.00 0.00 39.49 2.43
71 72 6.760298 GCAGATCAACAATGAAGACATAGAGA 59.240 38.462 0.00 0.00 39.49 3.10
72 73 7.279536 GCAGATCAACAATGAAGACATAGAGAA 59.720 37.037 0.00 0.00 39.49 2.87
73 74 8.819015 CAGATCAACAATGAAGACATAGAGAAG 58.181 37.037 0.00 0.00 39.49 2.85
74 75 7.986320 AGATCAACAATGAAGACATAGAGAAGG 59.014 37.037 0.00 0.00 39.49 3.46
75 76 7.009179 TCAACAATGAAGACATAGAGAAGGT 57.991 36.000 0.00 0.00 35.50 3.50
76 77 8.134202 TCAACAATGAAGACATAGAGAAGGTA 57.866 34.615 0.00 0.00 35.50 3.08
77 78 8.762645 TCAACAATGAAGACATAGAGAAGGTAT 58.237 33.333 0.00 0.00 35.50 2.73
78 79 9.388506 CAACAATGAAGACATAGAGAAGGTATT 57.611 33.333 0.00 0.00 35.50 1.89
84 85 9.434275 TGAAGACATAGAGAAGGTATTAATCCA 57.566 33.333 0.00 0.00 0.00 3.41
103 104 3.832527 CCAATTAGTGGGGGAGTTATGG 58.167 50.000 0.00 0.00 44.64 2.74
104 105 3.461831 CCAATTAGTGGGGGAGTTATGGA 59.538 47.826 0.00 0.00 44.64 3.41
105 106 4.461198 CAATTAGTGGGGGAGTTATGGAC 58.539 47.826 0.00 0.00 0.00 4.02
106 107 1.784358 TAGTGGGGGAGTTATGGACG 58.216 55.000 0.00 0.00 0.00 4.79
107 108 0.252558 AGTGGGGGAGTTATGGACGT 60.253 55.000 0.00 0.00 0.00 4.34
108 109 0.616891 GTGGGGGAGTTATGGACGTT 59.383 55.000 0.00 0.00 0.00 3.99
109 110 0.616371 TGGGGGAGTTATGGACGTTG 59.384 55.000 0.00 0.00 0.00 4.10
110 111 0.107361 GGGGGAGTTATGGACGTTGG 60.107 60.000 0.00 0.00 0.00 3.77
111 112 0.906775 GGGGAGTTATGGACGTTGGA 59.093 55.000 0.00 0.00 0.00 3.53
112 113 1.489230 GGGGAGTTATGGACGTTGGAT 59.511 52.381 0.00 0.00 0.00 3.41
113 114 2.701951 GGGGAGTTATGGACGTTGGATA 59.298 50.000 0.00 0.00 0.00 2.59
114 115 3.326880 GGGGAGTTATGGACGTTGGATAT 59.673 47.826 0.00 0.00 0.00 1.63
115 116 4.562963 GGGGAGTTATGGACGTTGGATATC 60.563 50.000 0.00 0.00 0.00 1.63
116 117 4.283722 GGGAGTTATGGACGTTGGATATCT 59.716 45.833 2.05 0.00 0.00 1.98
117 118 5.221661 GGGAGTTATGGACGTTGGATATCTT 60.222 44.000 2.05 0.00 0.00 2.40
118 119 6.289064 GGAGTTATGGACGTTGGATATCTTT 58.711 40.000 2.05 0.00 0.00 2.52
119 120 6.766467 GGAGTTATGGACGTTGGATATCTTTT 59.234 38.462 2.05 0.00 0.00 2.27
120 121 7.929785 GGAGTTATGGACGTTGGATATCTTTTA 59.070 37.037 2.05 0.00 0.00 1.52
121 122 9.321562 GAGTTATGGACGTTGGATATCTTTTAA 57.678 33.333 2.05 0.00 0.00 1.52
122 123 9.675464 AGTTATGGACGTTGGATATCTTTTAAA 57.325 29.630 2.05 0.00 0.00 1.52
126 127 8.343168 TGGACGTTGGATATCTTTTAAAATGT 57.657 30.769 0.09 0.00 0.00 2.71
127 128 8.455682 TGGACGTTGGATATCTTTTAAAATGTC 58.544 33.333 0.09 8.46 33.41 3.06
128 129 8.674607 GGACGTTGGATATCTTTTAAAATGTCT 58.325 33.333 0.09 0.00 34.22 3.41
157 158 9.899226 TTATGGTTTTTGTTTTCTTTGGTTTTG 57.101 25.926 0.00 0.00 0.00 2.44
158 159 6.209361 TGGTTTTTGTTTTCTTTGGTTTTGC 58.791 32.000 0.00 0.00 0.00 3.68
159 160 6.039829 TGGTTTTTGTTTTCTTTGGTTTTGCT 59.960 30.769 0.00 0.00 0.00 3.91
160 161 6.580791 GGTTTTTGTTTTCTTTGGTTTTGCTC 59.419 34.615 0.00 0.00 0.00 4.26
161 162 7.359595 GTTTTTGTTTTCTTTGGTTTTGCTCT 58.640 30.769 0.00 0.00 0.00 4.09
162 163 6.720012 TTTGTTTTCTTTGGTTTTGCTCTC 57.280 33.333 0.00 0.00 0.00 3.20
163 164 4.420168 TGTTTTCTTTGGTTTTGCTCTCG 58.580 39.130 0.00 0.00 0.00 4.04
164 165 4.082463 TGTTTTCTTTGGTTTTGCTCTCGT 60.082 37.500 0.00 0.00 0.00 4.18
165 166 5.124138 TGTTTTCTTTGGTTTTGCTCTCGTA 59.876 36.000 0.00 0.00 0.00 3.43
166 167 5.418310 TTTCTTTGGTTTTGCTCTCGTAG 57.582 39.130 0.00 0.00 0.00 3.51
176 177 1.540407 GCTCTCGTAGCGAAGACTTG 58.460 55.000 0.00 0.00 42.53 3.16
177 178 1.795889 GCTCTCGTAGCGAAGACTTGG 60.796 57.143 0.00 0.00 42.53 3.61
178 179 1.469308 CTCTCGTAGCGAAGACTTGGT 59.531 52.381 0.00 0.00 34.74 3.67
179 180 1.199327 TCTCGTAGCGAAGACTTGGTG 59.801 52.381 0.00 0.00 34.74 4.17
180 181 1.199327 CTCGTAGCGAAGACTTGGTGA 59.801 52.381 0.00 0.00 34.74 4.02
181 182 1.610038 TCGTAGCGAAGACTTGGTGAA 59.390 47.619 0.00 0.00 31.06 3.18
182 183 2.230508 TCGTAGCGAAGACTTGGTGAAT 59.769 45.455 0.00 0.00 31.06 2.57
183 184 2.993899 CGTAGCGAAGACTTGGTGAATT 59.006 45.455 0.00 0.00 0.00 2.17
184 185 4.082625 TCGTAGCGAAGACTTGGTGAATTA 60.083 41.667 0.00 0.00 31.06 1.40
185 186 4.804139 CGTAGCGAAGACTTGGTGAATTAT 59.196 41.667 0.00 0.00 0.00 1.28
186 187 5.276395 CGTAGCGAAGACTTGGTGAATTATG 60.276 44.000 0.00 0.00 0.00 1.90
187 188 4.579869 AGCGAAGACTTGGTGAATTATGT 58.420 39.130 0.00 0.00 0.00 2.29
188 189 5.730550 AGCGAAGACTTGGTGAATTATGTA 58.269 37.500 0.00 0.00 0.00 2.29
189 190 5.581085 AGCGAAGACTTGGTGAATTATGTAC 59.419 40.000 0.00 0.00 0.00 2.90
190 191 5.581085 GCGAAGACTTGGTGAATTATGTACT 59.419 40.000 0.00 0.00 0.00 2.73
191 192 6.092259 GCGAAGACTTGGTGAATTATGTACTT 59.908 38.462 0.00 0.00 0.00 2.24
192 193 7.674240 GCGAAGACTTGGTGAATTATGTACTTC 60.674 40.741 0.00 0.00 0.00 3.01
193 194 7.330946 CGAAGACTTGGTGAATTATGTACTTCA 59.669 37.037 0.00 0.00 32.24 3.02
194 195 8.918202 AAGACTTGGTGAATTATGTACTTCAA 57.082 30.769 0.00 0.00 33.45 2.69
195 196 9.520515 AAGACTTGGTGAATTATGTACTTCAAT 57.479 29.630 0.00 0.00 33.45 2.57
196 197 8.950210 AGACTTGGTGAATTATGTACTTCAATG 58.050 33.333 0.00 0.00 33.45 2.82
197 198 8.635765 ACTTGGTGAATTATGTACTTCAATGT 57.364 30.769 0.00 0.00 33.45 2.71
198 199 9.733556 ACTTGGTGAATTATGTACTTCAATGTA 57.266 29.630 0.00 0.00 33.45 2.29
199 200 9.988350 CTTGGTGAATTATGTACTTCAATGTAC 57.012 33.333 0.00 0.00 42.10 2.90
200 201 9.733556 TTGGTGAATTATGTACTTCAATGTACT 57.266 29.630 6.41 0.00 42.22 2.73
201 202 9.378551 TGGTGAATTATGTACTTCAATGTACTC 57.621 33.333 6.41 0.00 42.22 2.59
202 203 8.827677 GGTGAATTATGTACTTCAATGTACTCC 58.172 37.037 6.41 0.00 42.22 3.85
203 204 8.827677 GTGAATTATGTACTTCAATGTACTCCC 58.172 37.037 6.41 0.00 42.22 4.30
204 205 8.768397 TGAATTATGTACTTCAATGTACTCCCT 58.232 33.333 6.41 0.00 42.22 4.20
205 206 9.262358 GAATTATGTACTTCAATGTACTCCCTC 57.738 37.037 6.41 0.00 42.22 4.30
206 207 5.615925 ATGTACTTCAATGTACTCCCTCC 57.384 43.478 6.41 0.00 42.22 4.30
207 208 4.422057 TGTACTTCAATGTACTCCCTCCA 58.578 43.478 6.41 0.00 42.22 3.86
208 209 5.030147 TGTACTTCAATGTACTCCCTCCAT 58.970 41.667 6.41 0.00 42.22 3.41
209 210 5.487488 TGTACTTCAATGTACTCCCTCCATT 59.513 40.000 6.41 0.00 42.22 3.16
210 211 6.670464 TGTACTTCAATGTACTCCCTCCATTA 59.330 38.462 6.41 0.00 42.22 1.90
211 212 5.990668 ACTTCAATGTACTCCCTCCATTAC 58.009 41.667 0.00 0.00 0.00 1.89
212 213 5.487488 ACTTCAATGTACTCCCTCCATTACA 59.513 40.000 0.00 0.00 0.00 2.41
213 214 5.353394 TCAATGTACTCCCTCCATTACAC 57.647 43.478 0.00 0.00 0.00 2.90
214 215 4.780554 TCAATGTACTCCCTCCATTACACA 59.219 41.667 0.00 0.00 0.00 3.72
215 216 5.249622 TCAATGTACTCCCTCCATTACACAA 59.750 40.000 0.00 0.00 0.00 3.33
216 217 5.975988 ATGTACTCCCTCCATTACACAAT 57.024 39.130 0.00 0.00 0.00 2.71
217 218 5.097742 TGTACTCCCTCCATTACACAATG 57.902 43.478 0.00 0.00 41.13 2.82
218 219 4.534500 TGTACTCCCTCCATTACACAATGT 59.466 41.667 0.00 0.00 40.04 2.71
219 220 5.722441 TGTACTCCCTCCATTACACAATGTA 59.278 40.000 0.00 0.00 40.04 2.29
220 221 5.359194 ACTCCCTCCATTACACAATGTAG 57.641 43.478 0.00 0.00 40.04 2.74
221 222 4.783227 ACTCCCTCCATTACACAATGTAGT 59.217 41.667 0.00 0.00 40.04 2.73
222 223 5.097742 TCCCTCCATTACACAATGTAGTG 57.902 43.478 4.89 4.89 44.93 2.74
223 224 3.627577 CCCTCCATTACACAATGTAGTGC 59.372 47.826 6.08 0.00 43.23 4.40
224 225 3.309682 CCTCCATTACACAATGTAGTGCG 59.690 47.826 6.08 1.60 43.23 5.34
225 226 3.932710 CTCCATTACACAATGTAGTGCGT 59.067 43.478 6.08 0.00 43.23 5.24
226 227 3.930229 TCCATTACACAATGTAGTGCGTC 59.070 43.478 6.08 0.00 43.23 5.19
227 228 3.063452 CCATTACACAATGTAGTGCGTCC 59.937 47.826 6.08 0.00 43.23 4.79
228 229 3.388345 TTACACAATGTAGTGCGTCCA 57.612 42.857 0.00 0.00 43.23 4.02
229 230 1.508632 ACACAATGTAGTGCGTCCAC 58.491 50.000 0.00 0.00 43.23 4.02
230 231 0.438445 CACAATGTAGTGCGTCCACG 59.562 55.000 0.00 0.00 46.62 4.94
240 241 4.717629 CGTCCACGCTTGCCGAGA 62.718 66.667 0.00 0.00 41.02 4.04
241 242 2.125512 GTCCACGCTTGCCGAGAT 60.126 61.111 0.00 0.00 41.02 2.75
242 243 1.741770 GTCCACGCTTGCCGAGATT 60.742 57.895 0.00 0.00 41.02 2.40
243 244 1.003839 TCCACGCTTGCCGAGATTT 60.004 52.632 0.00 0.00 41.02 2.17
244 245 0.248012 TCCACGCTTGCCGAGATTTA 59.752 50.000 0.00 0.00 41.02 1.40
245 246 1.083489 CCACGCTTGCCGAGATTTAA 58.917 50.000 0.00 0.00 41.02 1.52
246 247 1.466950 CCACGCTTGCCGAGATTTAAA 59.533 47.619 0.00 0.00 41.02 1.52
247 248 2.505866 CACGCTTGCCGAGATTTAAAC 58.494 47.619 0.00 0.00 41.02 2.01
248 249 2.159627 CACGCTTGCCGAGATTTAAACT 59.840 45.455 0.00 0.00 41.02 2.66
249 250 2.812011 ACGCTTGCCGAGATTTAAACTT 59.188 40.909 0.00 0.00 41.02 2.66
250 251 3.163594 CGCTTGCCGAGATTTAAACTTG 58.836 45.455 0.00 0.00 40.02 3.16
251 252 3.120338 CGCTTGCCGAGATTTAAACTTGA 60.120 43.478 0.00 0.00 40.02 3.02
252 253 4.437390 CGCTTGCCGAGATTTAAACTTGAT 60.437 41.667 0.00 0.00 40.02 2.57
253 254 5.030936 GCTTGCCGAGATTTAAACTTGATC 58.969 41.667 0.00 0.00 0.00 2.92
254 255 5.391950 GCTTGCCGAGATTTAAACTTGATCA 60.392 40.000 0.00 0.00 0.00 2.92
255 256 6.678900 GCTTGCCGAGATTTAAACTTGATCAT 60.679 38.462 0.00 0.00 0.00 2.45
256 257 7.467267 GCTTGCCGAGATTTAAACTTGATCATA 60.467 37.037 0.00 0.00 0.00 2.15
257 258 7.857734 TGCCGAGATTTAAACTTGATCATAA 57.142 32.000 0.00 0.00 0.00 1.90
258 259 8.275015 TGCCGAGATTTAAACTTGATCATAAA 57.725 30.769 0.00 0.00 0.00 1.40
259 260 8.902806 TGCCGAGATTTAAACTTGATCATAAAT 58.097 29.630 10.43 10.43 32.27 1.40
260 261 9.736023 GCCGAGATTTAAACTTGATCATAAATT 57.264 29.630 11.48 2.45 30.36 1.82
269 270 8.915871 AAACTTGATCATAAATTTGACCGATG 57.084 30.769 0.00 0.00 0.00 3.84
270 271 7.864108 ACTTGATCATAAATTTGACCGATGA 57.136 32.000 0.00 2.01 0.00 2.92
271 272 7.923888 ACTTGATCATAAATTTGACCGATGAG 58.076 34.615 0.00 1.73 30.49 2.90
272 273 7.770433 ACTTGATCATAAATTTGACCGATGAGA 59.230 33.333 0.00 0.00 30.49 3.27
273 274 7.482654 TGATCATAAATTTGACCGATGAGAC 57.517 36.000 0.00 1.99 30.49 3.36
274 275 6.483307 TGATCATAAATTTGACCGATGAGACC 59.517 38.462 0.00 0.00 30.49 3.85
275 276 4.808895 TCATAAATTTGACCGATGAGACCG 59.191 41.667 0.00 0.00 0.00 4.79
276 277 3.328382 AAATTTGACCGATGAGACCGA 57.672 42.857 0.00 0.00 0.00 4.69
277 278 3.543680 AATTTGACCGATGAGACCGAT 57.456 42.857 0.00 0.00 0.00 4.18
278 279 2.579207 TTTGACCGATGAGACCGATC 57.421 50.000 0.00 0.00 0.00 3.69
279 280 0.380733 TTGACCGATGAGACCGATCG 59.619 55.000 8.51 8.51 41.94 3.69
280 281 1.370657 GACCGATGAGACCGATCGC 60.371 63.158 10.32 0.00 41.13 4.58
281 282 2.427575 CCGATGAGACCGATCGCG 60.428 66.667 10.32 0.00 41.13 5.87
292 293 2.819595 GATCGCGGCAGGAGCAAA 60.820 61.111 6.13 0.00 44.61 3.68
293 294 2.359850 ATCGCGGCAGGAGCAAAA 60.360 55.556 6.13 0.00 44.61 2.44
294 295 1.922135 GATCGCGGCAGGAGCAAAAA 61.922 55.000 6.13 0.00 44.61 1.94
295 296 1.315257 ATCGCGGCAGGAGCAAAAAT 61.315 50.000 6.13 0.00 44.61 1.82
296 297 1.080569 CGCGGCAGGAGCAAAAATT 60.081 52.632 0.00 0.00 44.61 1.82
297 298 0.170116 CGCGGCAGGAGCAAAAATTA 59.830 50.000 0.00 0.00 44.61 1.40
298 299 1.202290 CGCGGCAGGAGCAAAAATTAT 60.202 47.619 0.00 0.00 44.61 1.28
299 300 2.032799 CGCGGCAGGAGCAAAAATTATA 59.967 45.455 0.00 0.00 44.61 0.98
300 301 3.372060 GCGGCAGGAGCAAAAATTATAC 58.628 45.455 0.00 0.00 44.61 1.47
301 302 3.795488 GCGGCAGGAGCAAAAATTATACC 60.795 47.826 0.00 0.00 44.61 2.73
302 303 3.380004 CGGCAGGAGCAAAAATTATACCA 59.620 43.478 0.00 0.00 44.61 3.25
303 304 4.682787 GGCAGGAGCAAAAATTATACCAC 58.317 43.478 0.00 0.00 44.61 4.16
304 305 4.441495 GGCAGGAGCAAAAATTATACCACC 60.441 45.833 0.00 0.00 44.61 4.61
305 306 4.733523 GCAGGAGCAAAAATTATACCACCG 60.734 45.833 0.00 0.00 41.58 4.94
306 307 4.638421 CAGGAGCAAAAATTATACCACCGA 59.362 41.667 0.00 0.00 0.00 4.69
307 308 5.124776 CAGGAGCAAAAATTATACCACCGAA 59.875 40.000 0.00 0.00 0.00 4.30
308 309 5.124936 AGGAGCAAAAATTATACCACCGAAC 59.875 40.000 0.00 0.00 0.00 3.95
309 310 5.124936 GGAGCAAAAATTATACCACCGAACT 59.875 40.000 0.00 0.00 0.00 3.01
310 311 6.190954 AGCAAAAATTATACCACCGAACTC 57.809 37.500 0.00 0.00 0.00 3.01
311 312 5.708230 AGCAAAAATTATACCACCGAACTCA 59.292 36.000 0.00 0.00 0.00 3.41
312 313 6.377146 AGCAAAAATTATACCACCGAACTCAT 59.623 34.615 0.00 0.00 0.00 2.90
313 314 7.554835 AGCAAAAATTATACCACCGAACTCATA 59.445 33.333 0.00 0.00 0.00 2.15
314 315 8.349983 GCAAAAATTATACCACCGAACTCATAT 58.650 33.333 0.00 0.00 0.00 1.78
318 319 7.884816 ATTATACCACCGAACTCATATTTCG 57.115 36.000 1.78 1.78 44.40 3.46
333 334 8.712363 ACTCATATTTCGATACGAATTCAATGG 58.288 33.333 6.22 0.27 45.28 3.16
334 335 8.601845 TCATATTTCGATACGAATTCAATGGT 57.398 30.769 6.22 0.00 45.28 3.55
335 336 9.699703 TCATATTTCGATACGAATTCAATGGTA 57.300 29.630 6.22 0.00 45.28 3.25
348 349 9.471084 CGAATTCAATGGTATAATTTTTACCCC 57.529 33.333 6.22 0.00 38.69 4.95
349 350 9.772973 GAATTCAATGGTATAATTTTTACCCCC 57.227 33.333 11.93 0.00 38.69 5.40
350 351 6.963083 TCAATGGTATAATTTTTACCCCCG 57.037 37.500 11.93 2.91 38.69 5.73
351 352 5.302313 TCAATGGTATAATTTTTACCCCCGC 59.698 40.000 11.93 0.00 38.69 6.13
352 353 3.564264 TGGTATAATTTTTACCCCCGCC 58.436 45.455 11.93 0.00 38.69 6.13
353 354 2.553602 GGTATAATTTTTACCCCCGCCG 59.446 50.000 5.08 0.00 34.25 6.46
354 355 1.034356 ATAATTTTTACCCCCGCCGC 58.966 50.000 0.00 0.00 0.00 6.53
355 356 0.323178 TAATTTTTACCCCCGCCGCA 60.323 50.000 0.00 0.00 0.00 5.69
356 357 1.600511 AATTTTTACCCCCGCCGCAG 61.601 55.000 0.00 0.00 0.00 5.18
357 358 2.774687 ATTTTTACCCCCGCCGCAGT 62.775 55.000 0.00 0.00 0.00 4.40
358 359 3.905437 TTTTACCCCCGCCGCAGTC 62.905 63.158 0.00 0.00 0.00 3.51
369 370 3.244105 CGCAGTCGGTCTTGTTGG 58.756 61.111 0.00 0.00 0.00 3.77
370 371 1.594293 CGCAGTCGGTCTTGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
371 372 1.557443 CGCAGTCGGTCTTGTTGGTC 61.557 60.000 0.00 0.00 0.00 4.02
372 373 0.531974 GCAGTCGGTCTTGTTGGTCA 60.532 55.000 0.00 0.00 0.00 4.02
373 374 1.948104 CAGTCGGTCTTGTTGGTCAA 58.052 50.000 0.00 0.00 34.61 3.18
374 375 2.285083 CAGTCGGTCTTGTTGGTCAAA 58.715 47.619 0.00 0.00 35.48 2.69
375 376 2.878406 CAGTCGGTCTTGTTGGTCAAAT 59.122 45.455 0.00 0.00 35.48 2.32
376 377 3.315191 CAGTCGGTCTTGTTGGTCAAATT 59.685 43.478 0.00 0.00 35.48 1.82
377 378 3.951680 AGTCGGTCTTGTTGGTCAAATTT 59.048 39.130 0.00 0.00 35.48 1.82
378 379 5.008217 CAGTCGGTCTTGTTGGTCAAATTTA 59.992 40.000 0.00 0.00 35.48 1.40
379 380 5.768164 AGTCGGTCTTGTTGGTCAAATTTAT 59.232 36.000 0.00 0.00 35.48 1.40
380 381 5.856455 GTCGGTCTTGTTGGTCAAATTTATG 59.144 40.000 0.00 0.00 35.48 1.90
381 382 5.048364 TCGGTCTTGTTGGTCAAATTTATGG 60.048 40.000 0.00 0.00 35.48 2.74
382 383 5.278758 CGGTCTTGTTGGTCAAATTTATGGT 60.279 40.000 0.00 0.00 35.48 3.55
383 384 6.156519 GGTCTTGTTGGTCAAATTTATGGTC 58.843 40.000 0.00 0.00 35.48 4.02
384 385 5.856455 GTCTTGTTGGTCAAATTTATGGTCG 59.144 40.000 0.00 0.00 35.48 4.79
385 386 5.765677 TCTTGTTGGTCAAATTTATGGTCGA 59.234 36.000 0.00 0.00 35.48 4.20
386 387 6.263392 TCTTGTTGGTCAAATTTATGGTCGAA 59.737 34.615 0.00 0.00 35.48 3.71
387 388 5.764131 TGTTGGTCAAATTTATGGTCGAAC 58.236 37.500 0.00 0.00 0.00 3.95
388 389 5.533154 TGTTGGTCAAATTTATGGTCGAACT 59.467 36.000 0.33 0.00 0.00 3.01
389 390 6.039941 TGTTGGTCAAATTTATGGTCGAACTT 59.960 34.615 0.33 0.00 0.00 2.66
390 391 7.228906 TGTTGGTCAAATTTATGGTCGAACTTA 59.771 33.333 0.33 0.00 0.00 2.24
391 392 7.372451 TGGTCAAATTTATGGTCGAACTTAG 57.628 36.000 0.33 0.00 0.00 2.18
392 393 7.162761 TGGTCAAATTTATGGTCGAACTTAGA 58.837 34.615 0.33 0.00 0.00 2.10
393 394 7.827236 TGGTCAAATTTATGGTCGAACTTAGAT 59.173 33.333 0.33 0.00 0.00 1.98
394 395 8.336080 GGTCAAATTTATGGTCGAACTTAGATC 58.664 37.037 0.33 0.00 0.00 2.75
395 396 9.099454 GTCAAATTTATGGTCGAACTTAGATCT 57.901 33.333 0.33 0.00 0.00 2.75
396 397 9.667107 TCAAATTTATGGTCGAACTTAGATCTT 57.333 29.630 0.00 0.00 0.00 2.40
397 398 9.708222 CAAATTTATGGTCGAACTTAGATCTTG 57.292 33.333 0.00 5.13 0.00 3.02
398 399 9.667107 AAATTTATGGTCGAACTTAGATCTTGA 57.333 29.630 0.00 0.00 0.00 3.02
399 400 9.667107 AATTTATGGTCGAACTTAGATCTTGAA 57.333 29.630 0.00 0.00 0.00 2.69
400 401 9.667107 ATTTATGGTCGAACTTAGATCTTGAAA 57.333 29.630 0.00 0.00 0.00 2.69
401 402 9.496873 TTTATGGTCGAACTTAGATCTTGAAAA 57.503 29.630 0.00 0.00 0.00 2.29
403 404 5.408604 TGGTCGAACTTAGATCTTGAAAAGC 59.591 40.000 0.00 0.00 45.70 3.51
404 405 5.444745 GGTCGAACTTAGATCTTGAAAAGCG 60.445 44.000 0.00 0.00 45.70 4.68
405 406 5.118817 GTCGAACTTAGATCTTGAAAAGCGT 59.881 40.000 0.00 0.00 45.70 5.07
406 407 5.118664 TCGAACTTAGATCTTGAAAAGCGTG 59.881 40.000 0.00 0.00 45.70 5.34
407 408 5.613358 AACTTAGATCTTGAAAAGCGTGG 57.387 39.130 0.00 0.00 45.70 4.94
408 409 4.003648 ACTTAGATCTTGAAAAGCGTGGG 58.996 43.478 0.00 0.00 45.70 4.61
409 410 1.168714 AGATCTTGAAAAGCGTGGGC 58.831 50.000 0.00 0.00 45.70 5.36
410 411 0.179189 GATCTTGAAAAGCGTGGGCG 60.179 55.000 0.00 0.00 45.70 6.13
421 422 4.507879 GTGGGCGCACTACGTTAT 57.492 55.556 25.28 0.00 46.11 1.89
422 423 2.003672 GTGGGCGCACTACGTTATG 58.996 57.895 25.28 0.00 46.11 1.90
423 424 1.153529 TGGGCGCACTACGTTATGG 60.154 57.895 12.74 0.00 46.11 2.74
424 425 1.142314 GGGCGCACTACGTTATGGA 59.858 57.895 10.83 0.00 46.11 3.41
425 426 0.460635 GGGCGCACTACGTTATGGAA 60.461 55.000 10.83 0.00 46.11 3.53
426 427 1.578583 GGCGCACTACGTTATGGAAT 58.421 50.000 10.83 0.00 46.11 3.01
427 428 1.260561 GGCGCACTACGTTATGGAATG 59.739 52.381 10.83 0.00 46.11 2.67
428 429 2.198406 GCGCACTACGTTATGGAATGA 58.802 47.619 0.30 0.00 46.11 2.57
429 430 2.605818 GCGCACTACGTTATGGAATGAA 59.394 45.455 0.30 0.00 46.11 2.57
430 431 3.302480 GCGCACTACGTTATGGAATGAAG 60.302 47.826 0.30 0.00 46.11 3.02
431 432 3.245284 CGCACTACGTTATGGAATGAAGG 59.755 47.826 0.00 0.00 36.87 3.46
432 433 3.560068 GCACTACGTTATGGAATGAAGGG 59.440 47.826 0.00 0.00 0.00 3.95
433 434 4.682320 GCACTACGTTATGGAATGAAGGGA 60.682 45.833 0.00 0.00 0.00 4.20
434 435 5.050490 CACTACGTTATGGAATGAAGGGAG 58.950 45.833 0.00 0.00 0.00 4.30
435 436 4.715297 ACTACGTTATGGAATGAAGGGAGT 59.285 41.667 0.00 0.00 31.35 3.85
436 437 5.895534 ACTACGTTATGGAATGAAGGGAGTA 59.104 40.000 0.00 0.00 33.83 2.59
437 438 5.888982 ACGTTATGGAATGAAGGGAGTAT 57.111 39.130 0.00 0.00 0.00 2.12
438 439 5.855045 ACGTTATGGAATGAAGGGAGTATC 58.145 41.667 0.00 0.00 0.00 2.24
439 440 5.365605 ACGTTATGGAATGAAGGGAGTATCA 59.634 40.000 0.00 0.00 36.25 2.15
440 441 6.126883 ACGTTATGGAATGAAGGGAGTATCAA 60.127 38.462 0.00 0.00 36.25 2.57
441 442 6.765989 CGTTATGGAATGAAGGGAGTATCAAA 59.234 38.462 0.00 0.00 36.25 2.69
442 443 7.282224 CGTTATGGAATGAAGGGAGTATCAAAA 59.718 37.037 0.00 0.00 36.25 2.44
443 444 9.136323 GTTATGGAATGAAGGGAGTATCAAAAT 57.864 33.333 0.00 0.00 36.25 1.82
444 445 7.592885 ATGGAATGAAGGGAGTATCAAAATG 57.407 36.000 0.00 0.00 36.25 2.32
445 446 6.493166 TGGAATGAAGGGAGTATCAAAATGT 58.507 36.000 0.00 0.00 36.25 2.71
446 447 6.377996 TGGAATGAAGGGAGTATCAAAATGTG 59.622 38.462 0.00 0.00 36.25 3.21
447 448 6.183360 GGAATGAAGGGAGTATCAAAATGTGG 60.183 42.308 0.00 0.00 36.25 4.17
448 449 5.255397 TGAAGGGAGTATCAAAATGTGGT 57.745 39.130 0.00 0.00 36.25 4.16
449 450 5.640147 TGAAGGGAGTATCAAAATGTGGTT 58.360 37.500 0.00 0.00 36.25 3.67
450 451 5.476599 TGAAGGGAGTATCAAAATGTGGTTG 59.523 40.000 0.00 0.00 36.25 3.77
451 452 5.255397 AGGGAGTATCAAAATGTGGTTGA 57.745 39.130 0.00 0.00 39.24 3.18
452 453 5.640147 AGGGAGTATCAAAATGTGGTTGAA 58.360 37.500 0.00 0.00 38.44 2.69
453 454 6.256053 AGGGAGTATCAAAATGTGGTTGAAT 58.744 36.000 0.00 0.00 38.44 2.57
454 455 6.153340 AGGGAGTATCAAAATGTGGTTGAATG 59.847 38.462 0.00 0.00 38.44 2.67
455 456 6.152661 GGGAGTATCAAAATGTGGTTGAATGA 59.847 38.462 0.00 0.00 38.44 2.57
456 457 7.309744 GGGAGTATCAAAATGTGGTTGAATGAA 60.310 37.037 0.00 0.00 38.44 2.57
457 458 7.756722 GGAGTATCAAAATGTGGTTGAATGAAG 59.243 37.037 0.00 0.00 38.44 3.02
458 459 8.181904 AGTATCAAAATGTGGTTGAATGAAGT 57.818 30.769 0.00 0.00 38.44 3.01
459 460 9.295825 AGTATCAAAATGTGGTTGAATGAAGTA 57.704 29.630 0.00 0.00 38.44 2.24
460 461 9.906660 GTATCAAAATGTGGTTGAATGAAGTAA 57.093 29.630 0.00 0.00 38.44 2.24
462 463 9.829507 ATCAAAATGTGGTTGAATGAAGTAAAA 57.170 25.926 0.00 0.00 38.44 1.52
463 464 9.829507 TCAAAATGTGGTTGAATGAAGTAAAAT 57.170 25.926 0.00 0.00 32.13 1.82
484 485 8.980143 AAAATAACAAAGAAATATGTCGGTGG 57.020 30.769 4.48 0.00 0.00 4.61
485 486 4.434713 AACAAAGAAATATGTCGGTGGC 57.565 40.909 4.48 0.00 0.00 5.01
486 487 2.752903 ACAAAGAAATATGTCGGTGGCC 59.247 45.455 0.00 0.00 0.00 5.36
499 500 1.358877 GGTGGCCGAAAATGAAATGC 58.641 50.000 0.00 0.00 0.00 3.56
500 501 1.337635 GGTGGCCGAAAATGAAATGCA 60.338 47.619 0.00 0.00 0.00 3.96
501 502 2.620242 GTGGCCGAAAATGAAATGCAT 58.380 42.857 0.00 0.00 39.43 3.96
520 521 7.816945 ATGCATTTGAATTTCTTTTACTCCG 57.183 32.000 0.00 0.00 0.00 4.63
521 522 6.744112 TGCATTTGAATTTCTTTTACTCCGT 58.256 32.000 0.00 0.00 0.00 4.69
522 523 7.206687 TGCATTTGAATTTCTTTTACTCCGTT 58.793 30.769 0.00 0.00 0.00 4.44
523 524 8.353684 TGCATTTGAATTTCTTTTACTCCGTTA 58.646 29.630 0.00 0.00 0.00 3.18
524 525 9.353999 GCATTTGAATTTCTTTTACTCCGTTAT 57.646 29.630 0.00 0.00 0.00 1.89
538 539 9.467258 TTTACTCCGTTATATAACAAGGAATCG 57.533 33.333 22.27 13.10 35.99 3.34
539 540 6.453092 ACTCCGTTATATAACAAGGAATCGG 58.547 40.000 22.27 15.57 35.99 4.18
540 541 6.041296 ACTCCGTTATATAACAAGGAATCGGT 59.959 38.462 22.27 13.32 35.99 4.69
541 542 6.819284 TCCGTTATATAACAAGGAATCGGTT 58.181 36.000 22.27 0.00 35.99 4.44
542 543 7.950512 TCCGTTATATAACAAGGAATCGGTTA 58.049 34.615 22.27 1.62 35.99 2.85
543 544 8.084073 TCCGTTATATAACAAGGAATCGGTTAG 58.916 37.037 22.27 4.08 35.99 2.34
544 545 7.330208 CCGTTATATAACAAGGAATCGGTTAGG 59.670 40.741 22.27 8.62 35.99 2.69
545 546 7.869429 CGTTATATAACAAGGAATCGGTTAGGT 59.131 37.037 22.27 0.00 35.99 3.08
546 547 9.201127 GTTATATAACAAGGAATCGGTTAGGTC 57.799 37.037 18.75 0.00 36.25 3.85
547 548 3.345508 AACAAGGAATCGGTTAGGTCC 57.654 47.619 0.00 0.00 0.00 4.46
548 549 2.262637 ACAAGGAATCGGTTAGGTCCA 58.737 47.619 0.00 0.00 32.19 4.02
549 550 2.640826 ACAAGGAATCGGTTAGGTCCAA 59.359 45.455 0.00 0.00 32.19 3.53
550 551 3.007635 CAAGGAATCGGTTAGGTCCAAC 58.992 50.000 0.00 0.00 32.19 3.77
551 552 1.558294 AGGAATCGGTTAGGTCCAACC 59.442 52.381 11.30 11.30 43.88 3.77
562 563 7.899178 GGTTAGGTCCAACCAAAAATTAATG 57.101 36.000 14.79 0.00 46.14 1.90
563 564 7.672240 GGTTAGGTCCAACCAAAAATTAATGA 58.328 34.615 14.79 0.00 46.14 2.57
564 565 8.318412 GGTTAGGTCCAACCAAAAATTAATGAT 58.682 33.333 14.79 0.00 46.14 2.45
565 566 9.150348 GTTAGGTCCAACCAAAAATTAATGATG 57.850 33.333 0.00 0.00 41.95 3.07
566 567 7.315066 AGGTCCAACCAAAAATTAATGATGT 57.685 32.000 0.00 0.00 41.95 3.06
567 568 8.429237 AGGTCCAACCAAAAATTAATGATGTA 57.571 30.769 0.00 0.00 41.95 2.29
568 569 8.875168 AGGTCCAACCAAAAATTAATGATGTAA 58.125 29.630 0.00 0.00 41.95 2.41
569 570 9.150348 GGTCCAACCAAAAATTAATGATGTAAG 57.850 33.333 0.00 0.00 38.42 2.34
570 571 9.705290 GTCCAACCAAAAATTAATGATGTAAGT 57.295 29.630 0.00 0.00 0.00 2.24
587 588 9.472361 TGATGTAAGTTTTACTTCACTAGACAC 57.528 33.333 11.32 0.00 39.51 3.67
588 589 9.694137 GATGTAAGTTTTACTTCACTAGACACT 57.306 33.333 0.00 0.00 39.51 3.55
589 590 9.694137 ATGTAAGTTTTACTTCACTAGACACTC 57.306 33.333 0.00 0.00 39.51 3.51
590 591 8.139989 TGTAAGTTTTACTTCACTAGACACTCC 58.860 37.037 0.00 0.00 39.51 3.85
591 592 6.726490 AGTTTTACTTCACTAGACACTCCA 57.274 37.500 0.00 0.00 0.00 3.86
592 593 7.304497 AGTTTTACTTCACTAGACACTCCAT 57.696 36.000 0.00 0.00 0.00 3.41
593 594 7.736893 AGTTTTACTTCACTAGACACTCCATT 58.263 34.615 0.00 0.00 0.00 3.16
594 595 8.867097 AGTTTTACTTCACTAGACACTCCATTA 58.133 33.333 0.00 0.00 0.00 1.90
595 596 8.923683 GTTTTACTTCACTAGACACTCCATTAC 58.076 37.037 0.00 0.00 0.00 1.89
596 597 5.662674 ACTTCACTAGACACTCCATTACC 57.337 43.478 0.00 0.00 0.00 2.85
597 598 5.334421 ACTTCACTAGACACTCCATTACCT 58.666 41.667 0.00 0.00 0.00 3.08
598 599 6.491383 ACTTCACTAGACACTCCATTACCTA 58.509 40.000 0.00 0.00 0.00 3.08
599 600 7.126733 ACTTCACTAGACACTCCATTACCTAT 58.873 38.462 0.00 0.00 0.00 2.57
600 601 7.620094 ACTTCACTAGACACTCCATTACCTATT 59.380 37.037 0.00 0.00 0.00 1.73
601 602 9.132923 CTTCACTAGACACTCCATTACCTATTA 57.867 37.037 0.00 0.00 0.00 0.98
602 603 8.693120 TCACTAGACACTCCATTACCTATTAG 57.307 38.462 0.00 0.00 0.00 1.73
603 604 7.724506 TCACTAGACACTCCATTACCTATTAGG 59.275 40.741 8.25 8.25 42.49 2.69
604 605 7.724506 CACTAGACACTCCATTACCTATTAGGA 59.275 40.741 16.80 0.00 37.67 2.94
605 606 8.287350 ACTAGACACTCCATTACCTATTAGGAA 58.713 37.037 16.80 6.86 37.67 3.36
606 607 9.315363 CTAGACACTCCATTACCTATTAGGAAT 57.685 37.037 16.80 8.71 37.67 3.01
607 608 8.568617 AGACACTCCATTACCTATTAGGAATT 57.431 34.615 16.80 0.00 37.67 2.17
608 609 8.432805 AGACACTCCATTACCTATTAGGAATTG 58.567 37.037 16.80 9.46 37.67 2.32
609 610 7.518188 ACACTCCATTACCTATTAGGAATTGG 58.482 38.462 16.80 16.73 37.67 3.16
610 611 7.128883 ACACTCCATTACCTATTAGGAATTGGT 59.871 37.037 16.80 9.68 46.38 3.67
611 612 7.998964 CACTCCATTACCTATTAGGAATTGGTT 59.001 37.037 16.80 8.10 43.04 3.67
612 613 9.232882 ACTCCATTACCTATTAGGAATTGGTTA 57.767 33.333 16.80 3.03 43.04 2.85
613 614 9.726438 CTCCATTACCTATTAGGAATTGGTTAG 57.274 37.037 16.80 9.30 43.04 2.34
614 615 9.455144 TCCATTACCTATTAGGAATTGGTTAGA 57.545 33.333 16.80 1.92 43.04 2.10
620 621 9.628500 ACCTATTAGGAATTGGTTAGAAATGTC 57.372 33.333 16.80 0.00 43.04 3.06
621 622 9.067986 CCTATTAGGAATTGGTTAGAAATGTCC 57.932 37.037 3.41 0.00 37.67 4.02
622 623 9.853177 CTATTAGGAATTGGTTAGAAATGTCCT 57.147 33.333 0.00 0.00 37.92 3.85
625 626 7.939784 AGGAATTGGTTAGAAATGTCCTTAC 57.060 36.000 0.00 0.00 29.89 2.34
626 627 7.699878 AGGAATTGGTTAGAAATGTCCTTACT 58.300 34.615 0.00 0.00 29.89 2.24
627 628 8.832735 AGGAATTGGTTAGAAATGTCCTTACTA 58.167 33.333 0.00 0.00 29.89 1.82
628 629 9.110502 GGAATTGGTTAGAAATGTCCTTACTAG 57.889 37.037 0.00 0.00 0.00 2.57
629 630 9.886132 GAATTGGTTAGAAATGTCCTTACTAGA 57.114 33.333 0.00 0.00 0.00 2.43
631 632 9.838339 ATTGGTTAGAAATGTCCTTACTAGATG 57.162 33.333 0.00 0.00 0.00 2.90
632 633 8.603898 TGGTTAGAAATGTCCTTACTAGATGA 57.396 34.615 0.00 0.00 0.00 2.92
645 646 7.778853 TCCTTACTAGATGAAGTTCCGAACTAT 59.221 37.037 14.19 5.30 41.91 2.12
740 747 1.376812 CAAGTGGCCCCTACCGTTC 60.377 63.158 0.00 0.00 0.00 3.95
870 879 4.067896 CGCCATTATCTTAACTGCCATCT 58.932 43.478 0.00 0.00 0.00 2.90
946 955 4.367023 GTACGCTGCCGTCCACCA 62.367 66.667 0.00 0.00 46.39 4.17
947 956 4.367023 TACGCTGCCGTCCACCAC 62.367 66.667 0.00 0.00 46.39 4.16
957 966 1.750341 CGTCCACCACCACCACTGTA 61.750 60.000 0.00 0.00 0.00 2.74
1092 1101 2.487934 CCATCATTGAGATCACCGTCC 58.512 52.381 0.00 0.00 33.72 4.79
1093 1102 2.103771 CCATCATTGAGATCACCGTCCT 59.896 50.000 0.00 0.00 33.72 3.85
1177 1186 4.470170 TCGCCATGGACGACGACG 62.470 66.667 22.05 12.13 45.75 5.12
1458 1467 1.210931 CAAGCTGTTCATGCACCCG 59.789 57.895 0.00 0.00 0.00 5.28
1532 1541 0.107654 GTGGCGCAGGACTAGGAAAT 60.108 55.000 10.83 0.00 0.00 2.17
1586 1595 7.800092 AGATTGATCTGTAAATTAGTGCCTCT 58.200 34.615 0.00 0.00 35.42 3.69
1718 1758 5.304778 TGATCTGTTTCGTTCCATGAGAAA 58.695 37.500 0.00 0.00 35.85 2.52
1893 1936 9.219603 TCTAATTTCAACTCTTACAGTCAATGG 57.780 33.333 0.00 0.00 32.30 3.16
1894 1937 6.824305 ATTTCAACTCTTACAGTCAATGGG 57.176 37.500 0.00 0.00 32.30 4.00
1895 1938 4.974645 TCAACTCTTACAGTCAATGGGT 57.025 40.909 0.00 0.00 32.30 4.51
1896 1939 4.894784 TCAACTCTTACAGTCAATGGGTC 58.105 43.478 0.00 0.00 32.30 4.46
1897 1940 3.983044 ACTCTTACAGTCAATGGGTCC 57.017 47.619 0.00 0.00 0.00 4.46
1898 1941 3.248024 ACTCTTACAGTCAATGGGTCCA 58.752 45.455 0.00 0.00 0.00 4.02
1899 1942 3.008049 ACTCTTACAGTCAATGGGTCCAC 59.992 47.826 0.00 0.00 0.00 4.02
1900 1943 3.248024 TCTTACAGTCAATGGGTCCACT 58.752 45.455 0.00 0.00 0.00 4.00
1901 1944 3.260884 TCTTACAGTCAATGGGTCCACTC 59.739 47.826 0.00 0.00 0.00 3.51
1902 1945 1.734655 ACAGTCAATGGGTCCACTCT 58.265 50.000 0.00 0.00 0.00 3.24
1903 1946 2.057922 ACAGTCAATGGGTCCACTCTT 58.942 47.619 0.00 0.00 0.00 2.85
1904 1947 2.224621 ACAGTCAATGGGTCCACTCTTG 60.225 50.000 0.00 0.00 0.00 3.02
1905 1948 1.168714 GTCAATGGGTCCACTCTTGC 58.831 55.000 0.00 0.00 0.00 4.01
1906 1949 1.067295 TCAATGGGTCCACTCTTGCT 58.933 50.000 0.00 0.00 0.00 3.91
1907 1950 2.027192 GTCAATGGGTCCACTCTTGCTA 60.027 50.000 0.00 0.00 0.00 3.49
1908 1951 2.846206 TCAATGGGTCCACTCTTGCTAT 59.154 45.455 0.00 0.00 0.00 2.97
1909 1952 3.118261 TCAATGGGTCCACTCTTGCTATC 60.118 47.826 0.00 0.00 0.00 2.08
1910 1953 1.951209 TGGGTCCACTCTTGCTATCA 58.049 50.000 0.00 0.00 0.00 2.15
1911 1954 1.555075 TGGGTCCACTCTTGCTATCAC 59.445 52.381 0.00 0.00 0.00 3.06
1912 1955 1.555075 GGGTCCACTCTTGCTATCACA 59.445 52.381 0.00 0.00 0.00 3.58
1913 1956 2.419297 GGGTCCACTCTTGCTATCACAG 60.419 54.545 0.00 0.00 0.00 3.66
1914 1957 2.234908 GGTCCACTCTTGCTATCACAGT 59.765 50.000 0.00 0.00 0.00 3.55
1915 1958 3.257393 GTCCACTCTTGCTATCACAGTG 58.743 50.000 0.00 0.00 34.98 3.66
1916 1959 2.234661 TCCACTCTTGCTATCACAGTGG 59.765 50.000 14.15 14.15 46.01 4.00
1917 1960 2.005451 CACTCTTGCTATCACAGTGGC 58.995 52.381 0.00 0.00 33.06 5.01
1918 1961 1.905215 ACTCTTGCTATCACAGTGGCT 59.095 47.619 0.00 0.00 0.00 4.75
1925 1968 0.043485 TATCACAGTGGCTACCCCCA 59.957 55.000 0.00 0.00 0.00 4.96
2003 2046 2.378522 CATCCTCCCCCTCCCCTT 59.621 66.667 0.00 0.00 0.00 3.95
2025 2069 2.115911 CGCTGCTAGAGGAGGTCGT 61.116 63.158 0.00 0.00 33.79 4.34
2078 2122 1.684869 CGGAGGCTCTCTTCTCTTCCT 60.685 57.143 15.23 0.00 0.00 3.36
2440 2490 0.602638 ATCTCGTGGTTTTGCTGCGA 60.603 50.000 0.00 0.00 0.00 5.10
2445 2495 1.599171 CGTGGTTTTGCTGCGAATTGA 60.599 47.619 2.62 0.00 0.00 2.57
2514 2564 4.323477 CGGTTTGGCGAGGTGGGA 62.323 66.667 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.838339 ACACTTCTTCTTCTTCTTCAATTCTAA 57.162 29.630 0.00 0.00 0.00 2.10
4 5 9.265901 CACACTTCTTCTTCTTCTTCAATTCTA 57.734 33.333 0.00 0.00 0.00 2.10
5 6 7.255070 GCACACTTCTTCTTCTTCTTCAATTCT 60.255 37.037 0.00 0.00 0.00 2.40
6 7 6.855403 GCACACTTCTTCTTCTTCTTCAATTC 59.145 38.462 0.00 0.00 0.00 2.17
7 8 6.319658 TGCACACTTCTTCTTCTTCTTCAATT 59.680 34.615 0.00 0.00 0.00 2.32
8 9 5.824624 TGCACACTTCTTCTTCTTCTTCAAT 59.175 36.000 0.00 0.00 0.00 2.57
9 10 5.185454 TGCACACTTCTTCTTCTTCTTCAA 58.815 37.500 0.00 0.00 0.00 2.69
10 11 4.769688 TGCACACTTCTTCTTCTTCTTCA 58.230 39.130 0.00 0.00 0.00 3.02
11 12 5.741388 TTGCACACTTCTTCTTCTTCTTC 57.259 39.130 0.00 0.00 0.00 2.87
12 13 4.036144 GCTTGCACACTTCTTCTTCTTCTT 59.964 41.667 0.00 0.00 0.00 2.52
13 14 3.563390 GCTTGCACACTTCTTCTTCTTCT 59.437 43.478 0.00 0.00 0.00 2.85
14 15 3.563390 AGCTTGCACACTTCTTCTTCTTC 59.437 43.478 0.00 0.00 0.00 2.87
15 16 3.549794 AGCTTGCACACTTCTTCTTCTT 58.450 40.909 0.00 0.00 0.00 2.52
16 17 3.205784 AGCTTGCACACTTCTTCTTCT 57.794 42.857 0.00 0.00 0.00 2.85
17 18 3.313526 TCAAGCTTGCACACTTCTTCTTC 59.686 43.478 21.99 0.00 0.00 2.87
18 19 3.282021 TCAAGCTTGCACACTTCTTCTT 58.718 40.909 21.99 0.00 0.00 2.52
19 20 2.877168 CTCAAGCTTGCACACTTCTTCT 59.123 45.455 21.99 0.00 0.00 2.85
20 21 2.874701 TCTCAAGCTTGCACACTTCTTC 59.125 45.455 21.99 0.00 0.00 2.87
21 22 2.923121 TCTCAAGCTTGCACACTTCTT 58.077 42.857 21.99 0.00 0.00 2.52
22 23 2.627515 TCTCAAGCTTGCACACTTCT 57.372 45.000 21.99 0.00 0.00 2.85
23 24 3.265070 CTTCTCAAGCTTGCACACTTC 57.735 47.619 21.99 0.00 0.00 3.01
35 36 1.396301 GTTGATCTGCCGCTTCTCAAG 59.604 52.381 0.00 0.00 0.00 3.02
36 37 1.270785 TGTTGATCTGCCGCTTCTCAA 60.271 47.619 0.00 0.00 0.00 3.02
37 38 0.321346 TGTTGATCTGCCGCTTCTCA 59.679 50.000 0.00 0.00 0.00 3.27
38 39 1.442769 TTGTTGATCTGCCGCTTCTC 58.557 50.000 0.00 0.00 0.00 2.87
39 40 1.741706 CATTGTTGATCTGCCGCTTCT 59.258 47.619 0.00 0.00 0.00 2.85
40 41 1.739466 TCATTGTTGATCTGCCGCTTC 59.261 47.619 0.00 0.00 0.00 3.86
41 42 1.825090 TCATTGTTGATCTGCCGCTT 58.175 45.000 0.00 0.00 0.00 4.68
42 43 1.741706 CTTCATTGTTGATCTGCCGCT 59.258 47.619 0.00 0.00 0.00 5.52
43 44 1.739466 TCTTCATTGTTGATCTGCCGC 59.261 47.619 0.00 0.00 0.00 6.53
44 45 2.743664 TGTCTTCATTGTTGATCTGCCG 59.256 45.455 0.00 0.00 0.00 5.69
45 46 4.978083 ATGTCTTCATTGTTGATCTGCC 57.022 40.909 0.00 0.00 0.00 4.85
46 47 6.760298 TCTCTATGTCTTCATTGTTGATCTGC 59.240 38.462 0.00 0.00 35.70 4.26
47 48 8.713737 TTCTCTATGTCTTCATTGTTGATCTG 57.286 34.615 0.00 0.00 35.70 2.90
48 49 7.986320 CCTTCTCTATGTCTTCATTGTTGATCT 59.014 37.037 0.00 0.00 35.70 2.75
49 50 7.768120 ACCTTCTCTATGTCTTCATTGTTGATC 59.232 37.037 0.00 0.00 35.70 2.92
50 51 7.628234 ACCTTCTCTATGTCTTCATTGTTGAT 58.372 34.615 0.00 0.00 35.70 2.57
51 52 7.009179 ACCTTCTCTATGTCTTCATTGTTGA 57.991 36.000 0.00 0.00 35.70 3.18
52 53 8.954950 ATACCTTCTCTATGTCTTCATTGTTG 57.045 34.615 0.00 0.00 35.70 3.33
58 59 9.434275 TGGATTAATACCTTCTCTATGTCTTCA 57.566 33.333 0.00 0.00 0.00 3.02
82 83 3.461831 TCCATAACTCCCCCACTAATTGG 59.538 47.826 0.00 0.00 46.47 3.16
83 84 4.461198 GTCCATAACTCCCCCACTAATTG 58.539 47.826 0.00 0.00 0.00 2.32
84 85 3.135895 CGTCCATAACTCCCCCACTAATT 59.864 47.826 0.00 0.00 0.00 1.40
85 86 2.704065 CGTCCATAACTCCCCCACTAAT 59.296 50.000 0.00 0.00 0.00 1.73
86 87 2.112998 CGTCCATAACTCCCCCACTAA 58.887 52.381 0.00 0.00 0.00 2.24
87 88 1.007479 ACGTCCATAACTCCCCCACTA 59.993 52.381 0.00 0.00 0.00 2.74
88 89 0.252558 ACGTCCATAACTCCCCCACT 60.253 55.000 0.00 0.00 0.00 4.00
89 90 0.616891 AACGTCCATAACTCCCCCAC 59.383 55.000 0.00 0.00 0.00 4.61
90 91 0.616371 CAACGTCCATAACTCCCCCA 59.384 55.000 0.00 0.00 0.00 4.96
91 92 0.107361 CCAACGTCCATAACTCCCCC 60.107 60.000 0.00 0.00 0.00 5.40
92 93 0.906775 TCCAACGTCCATAACTCCCC 59.093 55.000 0.00 0.00 0.00 4.81
93 94 4.283722 AGATATCCAACGTCCATAACTCCC 59.716 45.833 0.00 0.00 0.00 4.30
94 95 5.470047 AGATATCCAACGTCCATAACTCC 57.530 43.478 0.00 0.00 0.00 3.85
95 96 7.787725 AAAAGATATCCAACGTCCATAACTC 57.212 36.000 0.00 0.00 0.00 3.01
96 97 9.675464 TTTAAAAGATATCCAACGTCCATAACT 57.325 29.630 0.00 0.00 0.00 2.24
100 101 8.966868 ACATTTTAAAAGATATCCAACGTCCAT 58.033 29.630 6.79 0.00 0.00 3.41
101 102 8.343168 ACATTTTAAAAGATATCCAACGTCCA 57.657 30.769 6.79 0.00 0.00 4.02
102 103 8.674607 AGACATTTTAAAAGATATCCAACGTCC 58.325 33.333 6.79 0.00 0.00 4.79
131 132 9.899226 CAAAACCAAAGAAAACAAAAACCATAA 57.101 25.926 0.00 0.00 0.00 1.90
132 133 8.023706 GCAAAACCAAAGAAAACAAAAACCATA 58.976 29.630 0.00 0.00 0.00 2.74
133 134 6.865726 GCAAAACCAAAGAAAACAAAAACCAT 59.134 30.769 0.00 0.00 0.00 3.55
134 135 6.039829 AGCAAAACCAAAGAAAACAAAAACCA 59.960 30.769 0.00 0.00 0.00 3.67
135 136 6.442952 AGCAAAACCAAAGAAAACAAAAACC 58.557 32.000 0.00 0.00 0.00 3.27
136 137 7.359595 AGAGCAAAACCAAAGAAAACAAAAAC 58.640 30.769 0.00 0.00 0.00 2.43
137 138 7.503521 AGAGCAAAACCAAAGAAAACAAAAA 57.496 28.000 0.00 0.00 0.00 1.94
138 139 6.128688 CGAGAGCAAAACCAAAGAAAACAAAA 60.129 34.615 0.00 0.00 0.00 2.44
139 140 5.347364 CGAGAGCAAAACCAAAGAAAACAAA 59.653 36.000 0.00 0.00 0.00 2.83
140 141 4.862018 CGAGAGCAAAACCAAAGAAAACAA 59.138 37.500 0.00 0.00 0.00 2.83
141 142 4.082463 ACGAGAGCAAAACCAAAGAAAACA 60.082 37.500 0.00 0.00 0.00 2.83
142 143 4.421058 ACGAGAGCAAAACCAAAGAAAAC 58.579 39.130 0.00 0.00 0.00 2.43
143 144 4.712122 ACGAGAGCAAAACCAAAGAAAA 57.288 36.364 0.00 0.00 0.00 2.29
144 145 5.418310 CTACGAGAGCAAAACCAAAGAAA 57.582 39.130 0.00 0.00 0.00 2.52
158 159 1.469308 ACCAAGTCTTCGCTACGAGAG 59.531 52.381 0.00 0.00 37.14 3.20
159 160 1.199327 CACCAAGTCTTCGCTACGAGA 59.801 52.381 0.00 0.00 37.14 4.04
160 161 1.199327 TCACCAAGTCTTCGCTACGAG 59.801 52.381 0.00 0.00 37.14 4.18
161 162 1.241165 TCACCAAGTCTTCGCTACGA 58.759 50.000 0.00 0.00 0.00 3.43
162 163 2.060326 TTCACCAAGTCTTCGCTACG 57.940 50.000 0.00 0.00 0.00 3.51
163 164 5.581085 ACATAATTCACCAAGTCTTCGCTAC 59.419 40.000 0.00 0.00 0.00 3.58
164 165 5.730550 ACATAATTCACCAAGTCTTCGCTA 58.269 37.500 0.00 0.00 0.00 4.26
165 166 4.579869 ACATAATTCACCAAGTCTTCGCT 58.420 39.130 0.00 0.00 0.00 4.93
166 167 4.946784 ACATAATTCACCAAGTCTTCGC 57.053 40.909 0.00 0.00 0.00 4.70
167 168 7.330946 TGAAGTACATAATTCACCAAGTCTTCG 59.669 37.037 0.00 0.00 35.64 3.79
168 169 8.547967 TGAAGTACATAATTCACCAAGTCTTC 57.452 34.615 0.00 0.00 35.64 2.87
169 170 8.918202 TTGAAGTACATAATTCACCAAGTCTT 57.082 30.769 1.46 0.00 39.61 3.01
170 171 8.950210 CATTGAAGTACATAATTCACCAAGTCT 58.050 33.333 1.46 0.00 39.61 3.24
171 172 8.730680 ACATTGAAGTACATAATTCACCAAGTC 58.269 33.333 1.46 0.00 39.61 3.01
172 173 8.635765 ACATTGAAGTACATAATTCACCAAGT 57.364 30.769 1.46 0.00 39.61 3.16
173 174 9.988350 GTACATTGAAGTACATAATTCACCAAG 57.012 33.333 1.46 0.00 42.97 3.61
174 175 9.733556 AGTACATTGAAGTACATAATTCACCAA 57.266 29.630 1.46 0.00 45.25 3.67
175 176 9.378551 GAGTACATTGAAGTACATAATTCACCA 57.621 33.333 1.46 0.00 45.25 4.17
176 177 8.827677 GGAGTACATTGAAGTACATAATTCACC 58.172 37.037 1.46 0.00 45.25 4.02
177 178 8.827677 GGGAGTACATTGAAGTACATAATTCAC 58.172 37.037 1.46 0.00 45.25 3.18
178 179 8.768397 AGGGAGTACATTGAAGTACATAATTCA 58.232 33.333 6.97 0.00 45.25 2.57
179 180 9.262358 GAGGGAGTACATTGAAGTACATAATTC 57.738 37.037 6.97 0.00 45.25 2.17
180 181 8.211629 GGAGGGAGTACATTGAAGTACATAATT 58.788 37.037 6.97 0.00 45.25 1.40
181 182 7.347222 TGGAGGGAGTACATTGAAGTACATAAT 59.653 37.037 6.97 0.00 45.25 1.28
182 183 6.670464 TGGAGGGAGTACATTGAAGTACATAA 59.330 38.462 6.97 0.00 45.25 1.90
183 184 6.199376 TGGAGGGAGTACATTGAAGTACATA 58.801 40.000 6.97 0.00 45.25 2.29
184 185 5.030147 TGGAGGGAGTACATTGAAGTACAT 58.970 41.667 6.97 0.00 45.25 2.29
185 186 4.422057 TGGAGGGAGTACATTGAAGTACA 58.578 43.478 6.97 0.00 45.25 2.90
186 187 5.615925 ATGGAGGGAGTACATTGAAGTAC 57.384 43.478 0.00 0.00 43.61 2.73
187 188 6.670464 TGTAATGGAGGGAGTACATTGAAGTA 59.330 38.462 0.00 0.00 36.36 2.24
188 189 5.487488 TGTAATGGAGGGAGTACATTGAAGT 59.513 40.000 0.00 0.00 36.36 3.01
189 190 5.817816 GTGTAATGGAGGGAGTACATTGAAG 59.182 44.000 0.00 0.00 36.36 3.02
190 191 5.249622 TGTGTAATGGAGGGAGTACATTGAA 59.750 40.000 0.00 0.00 36.36 2.69
191 192 4.780554 TGTGTAATGGAGGGAGTACATTGA 59.219 41.667 0.00 0.00 36.36 2.57
192 193 5.097742 TGTGTAATGGAGGGAGTACATTG 57.902 43.478 0.00 0.00 36.36 2.82
193 194 5.772393 TTGTGTAATGGAGGGAGTACATT 57.228 39.130 0.00 0.00 38.31 2.71
194 195 5.191722 ACATTGTGTAATGGAGGGAGTACAT 59.808 40.000 0.00 0.00 46.33 2.29
195 196 4.534500 ACATTGTGTAATGGAGGGAGTACA 59.466 41.667 0.00 0.00 46.33 2.90
196 197 5.099042 ACATTGTGTAATGGAGGGAGTAC 57.901 43.478 5.17 0.00 46.33 2.73
197 198 6.479972 CTACATTGTGTAATGGAGGGAGTA 57.520 41.667 0.00 0.00 46.96 2.59
198 199 5.359194 CTACATTGTGTAATGGAGGGAGT 57.641 43.478 0.00 0.00 46.96 3.85
204 205 3.930229 GACGCACTACATTGTGTAATGGA 59.070 43.478 0.00 0.00 46.33 3.41
205 206 3.063452 GGACGCACTACATTGTGTAATGG 59.937 47.826 0.00 0.00 46.33 3.16
207 208 3.682858 GTGGACGCACTACATTGTGTAAT 59.317 43.478 0.00 0.00 40.33 1.89
208 209 3.061322 GTGGACGCACTACATTGTGTAA 58.939 45.455 0.00 0.00 40.33 2.41
209 210 2.679450 GTGGACGCACTACATTGTGTA 58.321 47.619 0.00 0.00 40.33 2.90
210 211 1.508632 GTGGACGCACTACATTGTGT 58.491 50.000 0.00 0.00 42.95 3.72
211 212 0.438445 CGTGGACGCACTACATTGTG 59.562 55.000 0.00 0.00 40.62 3.33
212 213 2.822306 CGTGGACGCACTACATTGT 58.178 52.632 0.00 0.00 0.00 2.71
223 224 3.989698 ATCTCGGCAAGCGTGGACG 62.990 63.158 0.79 0.00 43.27 4.79
224 225 1.298859 AAATCTCGGCAAGCGTGGAC 61.299 55.000 0.79 0.00 0.00 4.02
225 226 0.248012 TAAATCTCGGCAAGCGTGGA 59.752 50.000 0.79 0.00 0.00 4.02
226 227 1.083489 TTAAATCTCGGCAAGCGTGG 58.917 50.000 0.79 0.00 0.00 4.94
227 228 2.159627 AGTTTAAATCTCGGCAAGCGTG 59.840 45.455 0.00 0.00 0.00 5.34
228 229 2.423577 AGTTTAAATCTCGGCAAGCGT 58.576 42.857 0.00 0.00 0.00 5.07
229 230 3.120338 TCAAGTTTAAATCTCGGCAAGCG 60.120 43.478 0.00 0.00 0.00 4.68
230 231 4.419522 TCAAGTTTAAATCTCGGCAAGC 57.580 40.909 0.00 0.00 0.00 4.01
231 232 6.182039 TGATCAAGTTTAAATCTCGGCAAG 57.818 37.500 0.00 0.00 0.00 4.01
232 233 6.757897 ATGATCAAGTTTAAATCTCGGCAA 57.242 33.333 0.00 0.00 0.00 4.52
233 234 7.857734 TTATGATCAAGTTTAAATCTCGGCA 57.142 32.000 0.00 0.00 0.00 5.69
234 235 9.736023 AATTTATGATCAAGTTTAAATCTCGGC 57.264 29.630 10.85 0.00 0.00 5.54
244 245 8.739039 TCATCGGTCAAATTTATGATCAAGTTT 58.261 29.630 0.00 0.00 30.56 2.66
245 246 8.279970 TCATCGGTCAAATTTATGATCAAGTT 57.720 30.769 0.00 0.00 30.56 2.66
246 247 7.770433 TCTCATCGGTCAAATTTATGATCAAGT 59.230 33.333 0.00 0.00 30.56 3.16
247 248 8.066595 GTCTCATCGGTCAAATTTATGATCAAG 58.933 37.037 0.00 0.00 30.56 3.02
248 249 7.012327 GGTCTCATCGGTCAAATTTATGATCAA 59.988 37.037 0.00 0.00 30.56 2.57
249 250 6.483307 GGTCTCATCGGTCAAATTTATGATCA 59.517 38.462 0.00 0.00 30.56 2.92
250 251 6.346919 CGGTCTCATCGGTCAAATTTATGATC 60.347 42.308 1.96 0.00 0.00 2.92
251 252 5.466728 CGGTCTCATCGGTCAAATTTATGAT 59.533 40.000 1.96 0.00 0.00 2.45
252 253 4.808895 CGGTCTCATCGGTCAAATTTATGA 59.191 41.667 0.00 0.00 0.00 2.15
253 254 4.808895 TCGGTCTCATCGGTCAAATTTATG 59.191 41.667 0.00 0.00 0.00 1.90
254 255 5.018539 TCGGTCTCATCGGTCAAATTTAT 57.981 39.130 0.00 0.00 0.00 1.40
255 256 4.459390 TCGGTCTCATCGGTCAAATTTA 57.541 40.909 0.00 0.00 0.00 1.40
256 257 3.328382 TCGGTCTCATCGGTCAAATTT 57.672 42.857 0.00 0.00 0.00 1.82
257 258 3.458189 GATCGGTCTCATCGGTCAAATT 58.542 45.455 0.00 0.00 37.65 1.82
258 259 2.543861 CGATCGGTCTCATCGGTCAAAT 60.544 50.000 7.38 0.00 39.62 2.32
259 260 1.202256 CGATCGGTCTCATCGGTCAAA 60.202 52.381 7.38 0.00 39.62 2.69
260 261 0.380733 CGATCGGTCTCATCGGTCAA 59.619 55.000 7.38 0.00 39.62 3.18
261 262 2.022520 CGATCGGTCTCATCGGTCA 58.977 57.895 7.38 0.00 39.62 4.02
262 263 1.370657 GCGATCGGTCTCATCGGTC 60.371 63.158 18.30 0.00 42.84 4.79
263 264 2.722487 GCGATCGGTCTCATCGGT 59.278 61.111 18.30 0.00 42.84 4.69
264 265 2.427575 CGCGATCGGTCTCATCGG 60.428 66.667 18.30 0.00 42.84 4.18
275 276 1.922135 TTTTTGCTCCTGCCGCGATC 61.922 55.000 8.23 0.00 38.71 3.69
276 277 1.315257 ATTTTTGCTCCTGCCGCGAT 61.315 50.000 8.23 0.00 38.71 4.58
277 278 1.523154 AATTTTTGCTCCTGCCGCGA 61.523 50.000 8.23 0.00 38.71 5.87
278 279 0.170116 TAATTTTTGCTCCTGCCGCG 59.830 50.000 0.00 0.00 38.71 6.46
279 280 2.584492 ATAATTTTTGCTCCTGCCGC 57.416 45.000 0.00 0.00 38.71 6.53
280 281 3.380004 TGGTATAATTTTTGCTCCTGCCG 59.620 43.478 0.00 0.00 38.71 5.69
281 282 4.441495 GGTGGTATAATTTTTGCTCCTGCC 60.441 45.833 0.00 0.00 38.71 4.85
282 283 4.682787 GGTGGTATAATTTTTGCTCCTGC 58.317 43.478 0.00 0.00 40.20 4.85
283 284 4.638421 TCGGTGGTATAATTTTTGCTCCTG 59.362 41.667 0.00 0.00 0.00 3.86
284 285 4.850680 TCGGTGGTATAATTTTTGCTCCT 58.149 39.130 0.00 0.00 0.00 3.69
285 286 5.124936 AGTTCGGTGGTATAATTTTTGCTCC 59.875 40.000 0.00 0.00 0.00 4.70
286 287 6.128117 TGAGTTCGGTGGTATAATTTTTGCTC 60.128 38.462 0.00 0.00 0.00 4.26
287 288 5.708230 TGAGTTCGGTGGTATAATTTTTGCT 59.292 36.000 0.00 0.00 0.00 3.91
288 289 5.945155 TGAGTTCGGTGGTATAATTTTTGC 58.055 37.500 0.00 0.00 0.00 3.68
292 293 8.770828 CGAAATATGAGTTCGGTGGTATAATTT 58.229 33.333 1.39 0.00 43.19 1.82
293 294 8.145767 TCGAAATATGAGTTCGGTGGTATAATT 58.854 33.333 8.90 0.00 46.11 1.40
294 295 7.663827 TCGAAATATGAGTTCGGTGGTATAAT 58.336 34.615 8.90 0.00 46.11 1.28
295 296 7.041635 TCGAAATATGAGTTCGGTGGTATAA 57.958 36.000 8.90 0.00 46.11 0.98
296 297 6.638096 TCGAAATATGAGTTCGGTGGTATA 57.362 37.500 8.90 0.00 46.11 1.47
297 298 5.524971 TCGAAATATGAGTTCGGTGGTAT 57.475 39.130 8.90 0.00 46.11 2.73
298 299 4.987408 TCGAAATATGAGTTCGGTGGTA 57.013 40.909 8.90 0.00 46.11 3.25
299 300 3.880047 TCGAAATATGAGTTCGGTGGT 57.120 42.857 8.90 0.00 46.11 4.16
300 301 4.381863 CGTATCGAAATATGAGTTCGGTGG 59.618 45.833 8.90 0.00 46.11 4.61
301 302 5.209977 TCGTATCGAAATATGAGTTCGGTG 58.790 41.667 8.90 0.00 46.11 4.94
302 303 5.428496 TCGTATCGAAATATGAGTTCGGT 57.572 39.130 8.90 4.80 46.11 4.69
322 323 9.471084 GGGGTAAAAATTATACCATTGAATTCG 57.529 33.333 17.56 0.00 43.83 3.34
323 324 9.772973 GGGGGTAAAAATTATACCATTGAATTC 57.227 33.333 17.56 0.00 43.83 2.17
324 325 8.425703 CGGGGGTAAAAATTATACCATTGAATT 58.574 33.333 17.56 0.00 43.83 2.17
325 326 7.472240 GCGGGGGTAAAAATTATACCATTGAAT 60.472 37.037 17.56 0.00 43.83 2.57
326 327 6.183360 GCGGGGGTAAAAATTATACCATTGAA 60.183 38.462 17.56 0.00 43.83 2.69
327 328 5.302313 GCGGGGGTAAAAATTATACCATTGA 59.698 40.000 17.56 0.00 43.83 2.57
328 329 5.510009 GGCGGGGGTAAAAATTATACCATTG 60.510 44.000 17.56 9.85 43.83 2.82
329 330 4.589798 GGCGGGGGTAAAAATTATACCATT 59.410 41.667 17.56 0.00 43.83 3.16
330 331 4.154176 GGCGGGGGTAAAAATTATACCAT 58.846 43.478 17.56 0.00 43.83 3.55
331 332 3.564264 GGCGGGGGTAAAAATTATACCA 58.436 45.455 17.56 0.00 43.83 3.25
332 333 2.553602 CGGCGGGGGTAAAAATTATACC 59.446 50.000 0.00 10.53 41.76 2.73
333 334 2.030893 GCGGCGGGGGTAAAAATTATAC 60.031 50.000 9.78 0.00 0.00 1.47
334 335 2.228925 GCGGCGGGGGTAAAAATTATA 58.771 47.619 9.78 0.00 0.00 0.98
335 336 1.034356 GCGGCGGGGGTAAAAATTAT 58.966 50.000 9.78 0.00 0.00 1.28
336 337 0.323178 TGCGGCGGGGGTAAAAATTA 60.323 50.000 9.78 0.00 0.00 1.40
337 338 1.600511 CTGCGGCGGGGGTAAAAATT 61.601 55.000 9.78 0.00 0.00 1.82
338 339 2.035940 TGCGGCGGGGGTAAAAAT 59.964 55.556 9.78 0.00 0.00 1.82
339 340 2.673687 CTGCGGCGGGGGTAAAAA 60.674 61.111 9.78 0.00 0.00 1.94
340 341 3.905437 GACTGCGGCGGGGGTAAAA 62.905 63.158 14.26 0.00 0.00 1.52
341 342 4.397832 GACTGCGGCGGGGGTAAA 62.398 66.667 14.26 0.00 0.00 2.01
352 353 1.557443 GACCAACAAGACCGACTGCG 61.557 60.000 0.00 0.00 37.24 5.18
353 354 0.531974 TGACCAACAAGACCGACTGC 60.532 55.000 0.00 0.00 0.00 4.40
354 355 1.948104 TTGACCAACAAGACCGACTG 58.052 50.000 0.00 0.00 34.20 3.51
355 356 2.702592 TTTGACCAACAAGACCGACT 57.297 45.000 0.00 0.00 39.77 4.18
356 357 3.982576 AATTTGACCAACAAGACCGAC 57.017 42.857 0.00 0.00 39.77 4.79
357 358 5.048364 CCATAAATTTGACCAACAAGACCGA 60.048 40.000 0.00 0.00 39.77 4.69
358 359 5.160641 CCATAAATTTGACCAACAAGACCG 58.839 41.667 0.00 0.00 39.77 4.79
359 360 6.096673 ACCATAAATTTGACCAACAAGACC 57.903 37.500 0.00 0.00 39.77 3.85
360 361 5.856455 CGACCATAAATTTGACCAACAAGAC 59.144 40.000 0.00 0.00 39.77 3.01
361 362 5.765677 TCGACCATAAATTTGACCAACAAGA 59.234 36.000 0.00 0.00 39.77 3.02
362 363 6.007936 TCGACCATAAATTTGACCAACAAG 57.992 37.500 0.00 0.00 39.77 3.16
363 364 6.039941 AGTTCGACCATAAATTTGACCAACAA 59.960 34.615 0.00 0.00 36.65 2.83
364 365 5.533154 AGTTCGACCATAAATTTGACCAACA 59.467 36.000 0.00 0.00 0.00 3.33
365 366 6.009115 AGTTCGACCATAAATTTGACCAAC 57.991 37.500 0.00 0.00 0.00 3.77
366 367 6.642707 AAGTTCGACCATAAATTTGACCAA 57.357 33.333 0.00 0.00 0.00 3.67
367 368 7.162761 TCTAAGTTCGACCATAAATTTGACCA 58.837 34.615 0.00 0.00 0.00 4.02
368 369 7.605410 TCTAAGTTCGACCATAAATTTGACC 57.395 36.000 0.00 0.00 0.00 4.02
369 370 9.099454 AGATCTAAGTTCGACCATAAATTTGAC 57.901 33.333 0.00 0.00 0.00 3.18
370 371 9.667107 AAGATCTAAGTTCGACCATAAATTTGA 57.333 29.630 0.00 0.00 0.00 2.69
371 372 9.708222 CAAGATCTAAGTTCGACCATAAATTTG 57.292 33.333 0.00 0.00 0.00 2.32
372 373 9.667107 TCAAGATCTAAGTTCGACCATAAATTT 57.333 29.630 0.00 0.00 0.00 1.82
373 374 9.667107 TTCAAGATCTAAGTTCGACCATAAATT 57.333 29.630 0.00 0.00 0.00 1.82
374 375 9.667107 TTTCAAGATCTAAGTTCGACCATAAAT 57.333 29.630 0.00 0.00 0.00 1.40
375 376 9.496873 TTTTCAAGATCTAAGTTCGACCATAAA 57.503 29.630 0.00 0.00 0.00 1.40
376 377 9.151471 CTTTTCAAGATCTAAGTTCGACCATAA 57.849 33.333 0.00 0.00 0.00 1.90
377 378 7.277981 GCTTTTCAAGATCTAAGTTCGACCATA 59.722 37.037 0.00 0.00 0.00 2.74
378 379 6.092807 GCTTTTCAAGATCTAAGTTCGACCAT 59.907 38.462 0.00 0.00 0.00 3.55
379 380 5.408604 GCTTTTCAAGATCTAAGTTCGACCA 59.591 40.000 0.00 0.00 0.00 4.02
380 381 5.444745 CGCTTTTCAAGATCTAAGTTCGACC 60.445 44.000 0.00 0.00 0.00 4.79
381 382 5.118817 ACGCTTTTCAAGATCTAAGTTCGAC 59.881 40.000 0.00 0.00 0.00 4.20
382 383 5.118664 CACGCTTTTCAAGATCTAAGTTCGA 59.881 40.000 0.00 0.00 0.00 3.71
383 384 5.308927 CACGCTTTTCAAGATCTAAGTTCG 58.691 41.667 0.00 0.00 0.00 3.95
384 385 5.390991 CCCACGCTTTTCAAGATCTAAGTTC 60.391 44.000 0.00 0.00 0.00 3.01
385 386 4.455877 CCCACGCTTTTCAAGATCTAAGTT 59.544 41.667 0.00 0.00 0.00 2.66
386 387 4.003648 CCCACGCTTTTCAAGATCTAAGT 58.996 43.478 0.00 0.00 0.00 2.24
387 388 3.181506 GCCCACGCTTTTCAAGATCTAAG 60.182 47.826 0.00 0.00 0.00 2.18
388 389 2.747446 GCCCACGCTTTTCAAGATCTAA 59.253 45.455 0.00 0.00 0.00 2.10
389 390 2.356135 GCCCACGCTTTTCAAGATCTA 58.644 47.619 0.00 0.00 0.00 1.98
390 391 1.168714 GCCCACGCTTTTCAAGATCT 58.831 50.000 0.00 0.00 0.00 2.75
391 392 0.179189 CGCCCACGCTTTTCAAGATC 60.179 55.000 0.00 0.00 0.00 2.75
392 393 1.875963 CGCCCACGCTTTTCAAGAT 59.124 52.632 0.00 0.00 0.00 2.40
393 394 3.339731 CGCCCACGCTTTTCAAGA 58.660 55.556 0.00 0.00 0.00 3.02
403 404 1.517694 ATAACGTAGTGCGCCCACG 60.518 57.895 19.72 19.72 45.00 4.94
404 405 1.426041 CCATAACGTAGTGCGCCCAC 61.426 60.000 4.18 0.00 45.00 4.61
405 406 1.153529 CCATAACGTAGTGCGCCCA 60.154 57.895 4.18 0.00 45.00 5.36
406 407 0.460635 TTCCATAACGTAGTGCGCCC 60.461 55.000 4.18 0.00 45.00 6.13
407 408 1.260561 CATTCCATAACGTAGTGCGCC 59.739 52.381 4.18 0.00 45.00 6.53
408 409 2.198406 TCATTCCATAACGTAGTGCGC 58.802 47.619 0.00 0.00 45.00 6.09
409 410 3.245284 CCTTCATTCCATAACGTAGTGCG 59.755 47.826 0.00 0.00 45.00 5.34
410 411 3.560068 CCCTTCATTCCATAACGTAGTGC 59.440 47.826 0.00 0.00 45.00 4.40
411 412 5.018539 TCCCTTCATTCCATAACGTAGTG 57.981 43.478 0.00 0.00 45.00 2.74
413 414 5.277857 ACTCCCTTCATTCCATAACGTAG 57.722 43.478 0.00 0.00 0.00 3.51
414 415 6.551975 TGATACTCCCTTCATTCCATAACGTA 59.448 38.462 0.00 0.00 0.00 3.57
415 416 5.365605 TGATACTCCCTTCATTCCATAACGT 59.634 40.000 0.00 0.00 0.00 3.99
416 417 5.853936 TGATACTCCCTTCATTCCATAACG 58.146 41.667 0.00 0.00 0.00 3.18
417 418 8.519799 TTTTGATACTCCCTTCATTCCATAAC 57.480 34.615 0.00 0.00 0.00 1.89
418 419 9.135189 CATTTTGATACTCCCTTCATTCCATAA 57.865 33.333 0.00 0.00 0.00 1.90
419 420 8.281531 ACATTTTGATACTCCCTTCATTCCATA 58.718 33.333 0.00 0.00 0.00 2.74
420 421 7.069085 CACATTTTGATACTCCCTTCATTCCAT 59.931 37.037 0.00 0.00 0.00 3.41
421 422 6.377996 CACATTTTGATACTCCCTTCATTCCA 59.622 38.462 0.00 0.00 0.00 3.53
422 423 6.183360 CCACATTTTGATACTCCCTTCATTCC 60.183 42.308 0.00 0.00 0.00 3.01
423 424 6.378280 ACCACATTTTGATACTCCCTTCATTC 59.622 38.462 0.00 0.00 0.00 2.67
424 425 6.256053 ACCACATTTTGATACTCCCTTCATT 58.744 36.000 0.00 0.00 0.00 2.57
425 426 5.831103 ACCACATTTTGATACTCCCTTCAT 58.169 37.500 0.00 0.00 0.00 2.57
426 427 5.255397 ACCACATTTTGATACTCCCTTCA 57.745 39.130 0.00 0.00 0.00 3.02
427 428 5.710099 TCAACCACATTTTGATACTCCCTTC 59.290 40.000 0.00 0.00 0.00 3.46
428 429 5.640147 TCAACCACATTTTGATACTCCCTT 58.360 37.500 0.00 0.00 0.00 3.95
429 430 5.255397 TCAACCACATTTTGATACTCCCT 57.745 39.130 0.00 0.00 0.00 4.20
430 431 5.975693 TTCAACCACATTTTGATACTCCC 57.024 39.130 0.00 0.00 33.03 4.30
431 432 7.156876 TCATTCAACCACATTTTGATACTCC 57.843 36.000 0.00 0.00 33.03 3.85
432 433 8.299570 ACTTCATTCAACCACATTTTGATACTC 58.700 33.333 0.00 0.00 33.03 2.59
433 434 8.181904 ACTTCATTCAACCACATTTTGATACT 57.818 30.769 0.00 0.00 33.03 2.12
434 435 9.906660 TTACTTCATTCAACCACATTTTGATAC 57.093 29.630 0.00 0.00 33.03 2.24
436 437 9.829507 TTTTACTTCATTCAACCACATTTTGAT 57.170 25.926 0.00 0.00 33.03 2.57
437 438 9.829507 ATTTTACTTCATTCAACCACATTTTGA 57.170 25.926 0.00 0.00 0.00 2.69
459 460 7.544217 GCCACCGACATATTTCTTTGTTATTTT 59.456 33.333 0.00 0.00 0.00 1.82
460 461 7.033185 GCCACCGACATATTTCTTTGTTATTT 58.967 34.615 0.00 0.00 0.00 1.40
461 462 6.405397 GGCCACCGACATATTTCTTTGTTATT 60.405 38.462 0.00 0.00 0.00 1.40
462 463 5.067283 GGCCACCGACATATTTCTTTGTTAT 59.933 40.000 0.00 0.00 0.00 1.89
463 464 4.396790 GGCCACCGACATATTTCTTTGTTA 59.603 41.667 0.00 0.00 0.00 2.41
464 465 3.192633 GGCCACCGACATATTTCTTTGTT 59.807 43.478 0.00 0.00 0.00 2.83
465 466 2.752903 GGCCACCGACATATTTCTTTGT 59.247 45.455 0.00 0.00 0.00 2.83
466 467 3.420839 GGCCACCGACATATTTCTTTG 57.579 47.619 0.00 0.00 0.00 2.77
480 481 1.337635 TGCATTTCATTTTCGGCCACC 60.338 47.619 2.24 0.00 0.00 4.61
481 482 2.077413 TGCATTTCATTTTCGGCCAC 57.923 45.000 2.24 0.00 0.00 5.01
482 483 3.331478 AATGCATTTCATTTTCGGCCA 57.669 38.095 5.99 0.00 42.48 5.36
494 495 8.711457 CGGAGTAAAAGAAATTCAAATGCATTT 58.289 29.630 18.99 18.99 0.00 2.32
495 496 7.872483 ACGGAGTAAAAGAAATTCAAATGCATT 59.128 29.630 5.99 5.99 41.94 3.56
496 497 7.378181 ACGGAGTAAAAGAAATTCAAATGCAT 58.622 30.769 0.00 0.00 41.94 3.96
497 498 6.744112 ACGGAGTAAAAGAAATTCAAATGCA 58.256 32.000 0.00 0.00 41.94 3.96
498 499 7.637709 AACGGAGTAAAAGAAATTCAAATGC 57.362 32.000 0.00 0.00 45.00 3.56
512 513 9.467258 CGATTCCTTGTTATATAACGGAGTAAA 57.533 33.333 18.42 14.37 45.00 2.01
513 514 8.084073 CCGATTCCTTGTTATATAACGGAGTAA 58.916 37.037 18.42 12.79 45.00 2.24
514 515 7.231317 ACCGATTCCTTGTTATATAACGGAGTA 59.769 37.037 18.42 8.21 45.00 2.59
516 517 6.453092 ACCGATTCCTTGTTATATAACGGAG 58.547 40.000 18.42 17.22 39.00 4.63
517 518 6.409524 ACCGATTCCTTGTTATATAACGGA 57.590 37.500 18.42 16.45 39.00 4.69
518 519 7.330208 CCTAACCGATTCCTTGTTATATAACGG 59.670 40.741 18.42 15.33 39.00 4.44
519 520 7.869429 ACCTAACCGATTCCTTGTTATATAACG 59.131 37.037 18.42 7.20 39.00 3.18
520 521 9.201127 GACCTAACCGATTCCTTGTTATATAAC 57.799 37.037 17.18 17.18 36.74 1.89
521 522 8.370182 GGACCTAACCGATTCCTTGTTATATAA 58.630 37.037 0.00 0.00 0.00 0.98
522 523 7.510001 TGGACCTAACCGATTCCTTGTTATATA 59.490 37.037 0.00 0.00 0.00 0.86
523 524 6.328148 TGGACCTAACCGATTCCTTGTTATAT 59.672 38.462 0.00 0.00 0.00 0.86
524 525 5.662208 TGGACCTAACCGATTCCTTGTTATA 59.338 40.000 0.00 0.00 0.00 0.98
525 526 4.472108 TGGACCTAACCGATTCCTTGTTAT 59.528 41.667 0.00 0.00 0.00 1.89
526 527 3.839490 TGGACCTAACCGATTCCTTGTTA 59.161 43.478 0.00 0.00 0.00 2.41
527 528 2.640826 TGGACCTAACCGATTCCTTGTT 59.359 45.455 0.00 0.00 0.00 2.83
528 529 2.262637 TGGACCTAACCGATTCCTTGT 58.737 47.619 0.00 0.00 0.00 3.16
529 530 3.007635 GTTGGACCTAACCGATTCCTTG 58.992 50.000 0.00 0.00 0.00 3.61
530 531 2.026542 GGTTGGACCTAACCGATTCCTT 60.027 50.000 9.27 0.00 40.58 3.36
531 532 1.558294 GGTTGGACCTAACCGATTCCT 59.442 52.381 9.27 0.00 40.58 3.36
532 533 2.034104 GGTTGGACCTAACCGATTCC 57.966 55.000 9.27 0.00 40.58 3.01
539 540 9.150348 CATCATTAATTTTTGGTTGGACCTAAC 57.850 33.333 0.00 0.00 39.58 2.34
540 541 8.875168 ACATCATTAATTTTTGGTTGGACCTAA 58.125 29.630 0.00 0.00 39.58 2.69
541 542 8.429237 ACATCATTAATTTTTGGTTGGACCTA 57.571 30.769 0.00 0.00 39.58 3.08
542 543 7.315066 ACATCATTAATTTTTGGTTGGACCT 57.685 32.000 0.00 0.00 39.58 3.85
543 544 9.150348 CTTACATCATTAATTTTTGGTTGGACC 57.850 33.333 0.00 0.00 39.22 4.46
544 545 9.705290 ACTTACATCATTAATTTTTGGTTGGAC 57.295 29.630 0.00 0.00 0.00 4.02
561 562 9.472361 GTGTCTAGTGAAGTAAAACTTACATCA 57.528 33.333 1.46 1.46 38.80 3.07
562 563 9.694137 AGTGTCTAGTGAAGTAAAACTTACATC 57.306 33.333 0.00 0.00 38.80 3.06
563 564 9.694137 GAGTGTCTAGTGAAGTAAAACTTACAT 57.306 33.333 0.00 0.00 38.80 2.29
564 565 8.139989 GGAGTGTCTAGTGAAGTAAAACTTACA 58.860 37.037 0.00 0.00 38.80 2.41
565 566 8.139989 TGGAGTGTCTAGTGAAGTAAAACTTAC 58.860 37.037 0.00 0.00 38.80 2.34
566 567 8.241497 TGGAGTGTCTAGTGAAGTAAAACTTA 57.759 34.615 0.00 0.00 38.80 2.24
567 568 7.120923 TGGAGTGTCTAGTGAAGTAAAACTT 57.879 36.000 0.00 0.00 41.95 2.66
568 569 6.726490 TGGAGTGTCTAGTGAAGTAAAACT 57.274 37.500 0.00 0.00 0.00 2.66
569 570 7.964604 AATGGAGTGTCTAGTGAAGTAAAAC 57.035 36.000 0.00 0.00 0.00 2.43
570 571 8.092687 GGTAATGGAGTGTCTAGTGAAGTAAAA 58.907 37.037 0.00 0.00 0.00 1.52
571 572 7.453752 AGGTAATGGAGTGTCTAGTGAAGTAAA 59.546 37.037 0.00 0.00 0.00 2.01
572 573 6.952358 AGGTAATGGAGTGTCTAGTGAAGTAA 59.048 38.462 0.00 0.00 0.00 2.24
573 574 6.491383 AGGTAATGGAGTGTCTAGTGAAGTA 58.509 40.000 0.00 0.00 0.00 2.24
574 575 5.334421 AGGTAATGGAGTGTCTAGTGAAGT 58.666 41.667 0.00 0.00 0.00 3.01
575 576 5.923733 AGGTAATGGAGTGTCTAGTGAAG 57.076 43.478 0.00 0.00 0.00 3.02
576 577 7.973048 AATAGGTAATGGAGTGTCTAGTGAA 57.027 36.000 0.00 0.00 0.00 3.18
577 578 7.724506 CCTAATAGGTAATGGAGTGTCTAGTGA 59.275 40.741 0.00 0.00 0.00 3.41
578 579 7.724506 TCCTAATAGGTAATGGAGTGTCTAGTG 59.275 40.741 6.17 0.00 36.53 2.74
579 580 7.823635 TCCTAATAGGTAATGGAGTGTCTAGT 58.176 38.462 6.17 0.00 36.53 2.57
580 581 8.707796 TTCCTAATAGGTAATGGAGTGTCTAG 57.292 38.462 6.17 0.00 36.53 2.43
581 582 9.670442 AATTCCTAATAGGTAATGGAGTGTCTA 57.330 33.333 6.17 0.00 36.53 2.59
582 583 8.432805 CAATTCCTAATAGGTAATGGAGTGTCT 58.567 37.037 6.17 0.00 36.53 3.41
583 584 7.661847 CCAATTCCTAATAGGTAATGGAGTGTC 59.338 40.741 13.03 0.00 35.63 3.67
584 585 7.128883 ACCAATTCCTAATAGGTAATGGAGTGT 59.871 37.037 22.01 2.07 36.44 3.55
585 586 7.518188 ACCAATTCCTAATAGGTAATGGAGTG 58.482 38.462 22.01 9.20 36.44 3.51
586 587 7.707467 ACCAATTCCTAATAGGTAATGGAGT 57.293 36.000 22.01 2.99 36.44 3.85
587 588 9.726438 CTAACCAATTCCTAATAGGTAATGGAG 57.274 37.037 22.01 9.65 36.44 3.86
588 589 9.455144 TCTAACCAATTCCTAATAGGTAATGGA 57.545 33.333 22.01 4.68 36.44 3.41
594 595 9.628500 GACATTTCTAACCAATTCCTAATAGGT 57.372 33.333 6.17 0.00 36.53 3.08
595 596 9.067986 GGACATTTCTAACCAATTCCTAATAGG 57.932 37.037 0.00 0.00 36.46 2.57
596 597 9.853177 AGGACATTTCTAACCAATTCCTAATAG 57.147 33.333 0.00 0.00 30.21 1.73
599 600 9.457436 GTAAGGACATTTCTAACCAATTCCTAA 57.543 33.333 0.00 0.00 31.80 2.69
600 601 8.832735 AGTAAGGACATTTCTAACCAATTCCTA 58.167 33.333 0.00 0.00 31.80 2.94
601 602 7.699878 AGTAAGGACATTTCTAACCAATTCCT 58.300 34.615 0.00 0.00 33.51 3.36
602 603 7.939784 AGTAAGGACATTTCTAACCAATTCC 57.060 36.000 0.00 0.00 0.00 3.01
603 604 9.886132 TCTAGTAAGGACATTTCTAACCAATTC 57.114 33.333 0.00 0.00 0.00 2.17
605 606 9.838339 CATCTAGTAAGGACATTTCTAACCAAT 57.162 33.333 0.00 0.00 0.00 3.16
606 607 9.042450 TCATCTAGTAAGGACATTTCTAACCAA 57.958 33.333 0.00 0.00 0.00 3.67
607 608 8.603898 TCATCTAGTAAGGACATTTCTAACCA 57.396 34.615 0.00 0.00 0.00 3.67
608 609 9.535878 CTTCATCTAGTAAGGACATTTCTAACC 57.464 37.037 0.00 0.00 0.00 2.85
612 613 8.261522 GGAACTTCATCTAGTAAGGACATTTCT 58.738 37.037 0.00 0.00 0.00 2.52
613 614 7.222999 CGGAACTTCATCTAGTAAGGACATTTC 59.777 40.741 0.00 0.00 0.00 2.17
614 615 7.042335 CGGAACTTCATCTAGTAAGGACATTT 58.958 38.462 0.00 0.00 0.00 2.32
615 616 6.380274 TCGGAACTTCATCTAGTAAGGACATT 59.620 38.462 0.00 0.00 0.00 2.71
616 617 5.892119 TCGGAACTTCATCTAGTAAGGACAT 59.108 40.000 0.00 0.00 0.00 3.06
617 618 5.258841 TCGGAACTTCATCTAGTAAGGACA 58.741 41.667 0.00 0.00 0.00 4.02
618 619 5.831702 TCGGAACTTCATCTAGTAAGGAC 57.168 43.478 0.00 0.00 0.00 3.85
619 620 5.950549 AGTTCGGAACTTCATCTAGTAAGGA 59.049 40.000 17.38 0.00 39.04 3.36
620 621 6.210287 AGTTCGGAACTTCATCTAGTAAGG 57.790 41.667 17.38 0.00 39.04 2.69
623 624 9.624373 ACTAATAGTTCGGAACTTCATCTAGTA 57.376 33.333 26.71 11.34 42.81 1.82
624 625 8.522542 ACTAATAGTTCGGAACTTCATCTAGT 57.477 34.615 26.71 20.08 42.81 2.57
625 626 9.453325 GAACTAATAGTTCGGAACTTCATCTAG 57.547 37.037 26.71 19.58 44.22 2.43
740 747 1.425267 TATGGCACGGATCAAACGCG 61.425 55.000 3.53 3.53 34.00 6.01
870 879 3.059393 CGGCTATATATCCGTAATCGCGA 60.059 47.826 13.09 13.09 40.72 5.87
939 948 0.250166 GTACAGTGGTGGTGGTGGAC 60.250 60.000 0.00 0.00 0.00 4.02
945 954 0.036306 GGGGAAGTACAGTGGTGGTG 59.964 60.000 0.00 0.00 0.00 4.17
946 955 0.104620 AGGGGAAGTACAGTGGTGGT 60.105 55.000 0.00 0.00 0.00 4.16
947 956 1.064825 AAGGGGAAGTACAGTGGTGG 58.935 55.000 0.00 0.00 0.00 4.61
1092 1101 2.726351 GGAGAAGGGGTGGAGCGAG 61.726 68.421 0.00 0.00 0.00 5.03
1093 1102 2.683933 GGAGAAGGGGTGGAGCGA 60.684 66.667 0.00 0.00 0.00 4.93
1532 1541 1.230635 GCTCCTCAAAGTGCGCTTGA 61.231 55.000 14.36 9.79 34.71 3.02
1586 1595 4.021104 AGGAAGAACTCGAATGATGTCACA 60.021 41.667 0.00 0.00 0.00 3.58
1718 1758 7.505248 TCTCTATGCAGTATCTCAGTTCTCAAT 59.495 37.037 0.00 0.00 0.00 2.57
1833 1876 9.080915 GGGATAAAAACTACTAGTTGAGTTACG 57.919 37.037 11.43 0.00 38.66 3.18
1888 1931 2.787473 TAGCAAGAGTGGACCCATTG 57.213 50.000 0.00 0.00 0.00 2.82
1889 1932 2.846206 TGATAGCAAGAGTGGACCCATT 59.154 45.455 0.00 0.00 0.00 3.16
1890 1933 2.171448 GTGATAGCAAGAGTGGACCCAT 59.829 50.000 0.00 0.00 0.00 4.00
1891 1934 1.555075 GTGATAGCAAGAGTGGACCCA 59.445 52.381 0.00 0.00 0.00 4.51
1892 1935 1.555075 TGTGATAGCAAGAGTGGACCC 59.445 52.381 0.00 0.00 0.00 4.46
1893 1936 2.234908 ACTGTGATAGCAAGAGTGGACC 59.765 50.000 0.00 0.00 0.00 4.46
1894 1937 3.257393 CACTGTGATAGCAAGAGTGGAC 58.743 50.000 11.78 0.00 35.00 4.02
1895 1938 3.599730 CACTGTGATAGCAAGAGTGGA 57.400 47.619 11.78 0.00 35.00 4.02
1896 1939 2.625737 CCACTGTGATAGCAAGAGTGG 58.374 52.381 20.35 20.35 44.29 4.00
1897 1940 2.005451 GCCACTGTGATAGCAAGAGTG 58.995 52.381 9.86 12.41 36.89 3.51
1898 1941 1.905215 AGCCACTGTGATAGCAAGAGT 59.095 47.619 9.86 0.00 0.00 3.24
1899 1942 2.687700 AGCCACTGTGATAGCAAGAG 57.312 50.000 9.86 0.00 0.00 2.85
1900 1943 2.168521 GGTAGCCACTGTGATAGCAAGA 59.831 50.000 9.86 0.00 0.00 3.02
1901 1944 2.555199 GGTAGCCACTGTGATAGCAAG 58.445 52.381 9.86 0.00 0.00 4.01
1902 1945 1.209504 GGGTAGCCACTGTGATAGCAA 59.790 52.381 9.86 0.00 0.00 3.91
1903 1946 0.830648 GGGTAGCCACTGTGATAGCA 59.169 55.000 9.86 0.00 0.00 3.49
1904 1947 0.106894 GGGGTAGCCACTGTGATAGC 59.893 60.000 14.06 10.83 0.00 2.97
1905 1948 0.759346 GGGGGTAGCCACTGTGATAG 59.241 60.000 14.06 0.00 0.00 2.08
1906 1949 0.043485 TGGGGGTAGCCACTGTGATA 59.957 55.000 15.61 0.00 0.00 2.15
1907 1950 1.229820 TGGGGGTAGCCACTGTGAT 60.230 57.895 15.61 0.00 0.00 3.06
1908 1951 2.205749 TGGGGGTAGCCACTGTGA 59.794 61.111 15.61 0.00 0.00 3.58
1909 1952 2.351276 GTGGGGGTAGCCACTGTG 59.649 66.667 15.61 0.00 34.49 3.66
1910 1953 3.319198 CGTGGGGGTAGCCACTGT 61.319 66.667 15.61 0.00 35.08 3.55
1911 1954 3.310860 GACGTGGGGGTAGCCACTG 62.311 68.421 15.61 9.57 35.08 3.66
1912 1955 3.001406 GACGTGGGGGTAGCCACT 61.001 66.667 15.61 0.00 35.08 4.00
1913 1956 4.446413 CGACGTGGGGGTAGCCAC 62.446 72.222 14.06 10.39 0.00 5.01
2010 2053 1.451567 CCGACGACCTCCTCTAGCA 60.452 63.158 0.00 0.00 0.00 3.49
2121 2166 2.291043 ACAGATCGGGGGAAAGCGT 61.291 57.895 0.00 0.00 0.00 5.07
2206 2255 1.781786 TCCTTGGAGCCTAGTAGCTG 58.218 55.000 0.00 0.00 45.15 4.24
2211 2260 3.037549 CAGATCTTCCTTGGAGCCTAGT 58.962 50.000 0.00 0.00 0.00 2.57
2387 2437 2.737503 GCCTTGGATAGGGGCAATG 58.262 57.895 0.00 0.00 44.91 2.82
2407 2457 0.665670 CGAGATCGGCGATGCAGATT 60.666 55.000 29.20 0.67 42.84 2.40
2440 2490 5.105187 TCACCGTCTCTGATCTGAATCAATT 60.105 40.000 3.72 0.00 41.33 2.32
2445 2495 3.956848 TCATCACCGTCTCTGATCTGAAT 59.043 43.478 3.72 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.