Multiple sequence alignment - TraesCS2A01G295100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G295100 chr2A 100.000 8889 0 0 1 8889 507684629 507693517 0.000000e+00 16415.0
1 TraesCS2A01G295100 chr2A 90.426 94 9 0 1994 2087 400977368 400977275 3.370000e-24 124.0
2 TraesCS2A01G295100 chr2A 90.426 94 9 0 1994 2087 402917521 402917428 3.370000e-24 124.0
3 TraesCS2A01G295100 chr2A 95.556 45 2 0 7474 7518 202037100 202037144 1.240000e-08 73.1
4 TraesCS2A01G295100 chr2D 97.147 2944 74 7 563 3504 375357940 375360875 0.000000e+00 4963.0
5 TraesCS2A01G295100 chr2D 96.460 2768 70 18 5231 7980 375362610 375365367 0.000000e+00 4543.0
6 TraesCS2A01G295100 chr2D 95.870 1138 32 8 3519 4647 375360923 375362054 0.000000e+00 1827.0
7 TraesCS2A01G295100 chr2D 87.121 792 39 31 8154 8889 375365577 375366361 0.000000e+00 839.0
8 TraesCS2A01G295100 chr2D 92.830 530 26 5 4711 5229 375362053 375362581 0.000000e+00 758.0
9 TraesCS2A01G295100 chr2D 88.626 211 21 3 4660 4867 375361840 375362050 4.120000e-63 254.0
10 TraesCS2A01G295100 chr2D 88.827 179 15 5 4485 4661 375362053 375362228 1.940000e-51 215.0
11 TraesCS2A01G295100 chr2D 94.667 75 4 0 8002 8076 375365361 375365435 5.640000e-22 117.0
12 TraesCS2A01G295100 chr2D 94.545 55 2 1 8076 8129 375365469 375365523 5.720000e-12 84.2
13 TraesCS2A01G295100 chr2D 92.308 52 4 0 7468 7519 83962464 83962515 3.440000e-09 75.0
14 TraesCS2A01G295100 chr2B 96.537 2859 73 14 5231 8076 445683629 445686474 0.000000e+00 4708.0
15 TraesCS2A01G295100 chr2B 96.894 1771 50 4 1734 3504 445679956 445681721 0.000000e+00 2961.0
16 TraesCS2A01G295100 chr2B 95.221 1381 47 12 3519 4889 445681769 445683140 0.000000e+00 2167.0
17 TraesCS2A01G295100 chr2B 95.670 1201 38 4 563 1755 445678582 445679776 0.000000e+00 1917.0
18 TraesCS2A01G295100 chr2B 93.009 329 15 1 8569 8889 445687101 445687429 2.900000e-129 473.0
19 TraesCS2A01G295100 chr2B 88.649 370 15 7 4887 5230 445683233 445683601 8.250000e-115 425.0
20 TraesCS2A01G295100 chr2B 81.667 360 19 22 8071 8402 445686502 445686842 1.150000e-63 255.0
21 TraesCS2A01G295100 chr2B 91.018 167 8 5 8411 8570 445686904 445687070 1.500000e-52 219.0
22 TraesCS2A01G295100 chr2B 91.753 97 8 0 1989 2085 50031305 50031401 1.560000e-27 135.0
23 TraesCS2A01G295100 chr2B 90.722 97 9 0 1989 2085 546808366 546808270 7.240000e-26 130.0
24 TraesCS2A01G295100 chr2B 88.636 88 10 0 1996 2083 407363936 407364023 3.390000e-19 108.0
25 TraesCS2A01G295100 chr7B 97.496 559 14 0 1 559 356697666 356698224 0.000000e+00 955.0
26 TraesCS2A01G295100 chr4A 97.138 559 16 0 1 559 120041827 120042385 0.000000e+00 944.0
27 TraesCS2A01G295100 chr4A 97.297 555 15 0 5 559 136219107 136218553 0.000000e+00 942.0
28 TraesCS2A01G295100 chr5B 97.122 556 16 0 4 559 130811267 130810712 0.000000e+00 939.0
29 TraesCS2A01G295100 chr5B 81.087 423 57 10 1995 2399 678448737 678449154 5.180000e-82 316.0
30 TraesCS2A01G295100 chr5B 85.714 70 9 1 7464 7532 22510813 22510882 1.240000e-08 73.1
31 TraesCS2A01G295100 chr5B 87.719 57 6 1 7464 7519 22817657 22817713 2.070000e-06 65.8
32 TraesCS2A01G295100 chr4B 97.122 556 16 0 4 559 660474398 660473843 0.000000e+00 939.0
33 TraesCS2A01G295100 chr3A 96.577 555 17 2 5 559 218797738 218797186 0.000000e+00 918.0
34 TraesCS2A01G295100 chr3A 82.927 82 9 4 7480 7557 113800464 113800384 1.600000e-07 69.4
35 TraesCS2A01G295100 chr1D 96.277 564 13 1 4 559 333615008 333614445 0.000000e+00 918.0
36 TraesCS2A01G295100 chr1D 83.704 270 26 11 1994 2249 313138970 313138705 1.150000e-58 239.0
37 TraesCS2A01G295100 chr3B 96.243 559 21 0 1 559 787677488 787678046 0.000000e+00 917.0
38 TraesCS2A01G295100 chr6D 94.316 563 24 4 4 559 113911654 113911093 0.000000e+00 856.0
39 TraesCS2A01G295100 chr6B 78.396 449 52 21 1994 2401 176161111 176160667 5.330000e-62 250.0
40 TraesCS2A01G295100 chr6B 78.396 449 52 21 1994 2401 176222293 176221849 5.330000e-62 250.0
41 TraesCS2A01G295100 chr6B 78.348 448 52 21 1994 2400 176184988 176184545 1.920000e-61 248.0
42 TraesCS2A01G295100 chr6B 77.951 449 54 21 1994 2401 176247105 176246661 1.150000e-58 239.0
43 TraesCS2A01G295100 chrUn 78.222 450 52 21 1994 2401 78293532 78293977 6.890000e-61 246.0
44 TraesCS2A01G295100 chr4D 91.489 94 8 0 1994 2087 287287673 287287580 7.240000e-26 130.0
45 TraesCS2A01G295100 chr4D 95.000 40 2 0 7480 7519 87721755 87721794 7.450000e-06 63.9
46 TraesCS2A01G295100 chr5D 84.375 64 7 3 7457 7518 495311461 495311523 9.640000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G295100 chr2A 507684629 507693517 8888 False 16415.000000 16415 100.000000 1 8889 1 chr2A.!!$F2 8888
1 TraesCS2A01G295100 chr2D 375357940 375366361 8421 False 1511.133333 4963 92.899222 563 8889 9 chr2D.!!$F2 8326
2 TraesCS2A01G295100 chr2B 445678582 445687429 8847 False 1640.625000 4708 92.333125 563 8889 8 chr2B.!!$F3 8326
3 TraesCS2A01G295100 chr7B 356697666 356698224 558 False 955.000000 955 97.496000 1 559 1 chr7B.!!$F1 558
4 TraesCS2A01G295100 chr4A 120041827 120042385 558 False 944.000000 944 97.138000 1 559 1 chr4A.!!$F1 558
5 TraesCS2A01G295100 chr4A 136218553 136219107 554 True 942.000000 942 97.297000 5 559 1 chr4A.!!$R1 554
6 TraesCS2A01G295100 chr5B 130810712 130811267 555 True 939.000000 939 97.122000 4 559 1 chr5B.!!$R1 555
7 TraesCS2A01G295100 chr4B 660473843 660474398 555 True 939.000000 939 97.122000 4 559 1 chr4B.!!$R1 555
8 TraesCS2A01G295100 chr3A 218797186 218797738 552 True 918.000000 918 96.577000 5 559 1 chr3A.!!$R2 554
9 TraesCS2A01G295100 chr1D 333614445 333615008 563 True 918.000000 918 96.277000 4 559 1 chr1D.!!$R2 555
10 TraesCS2A01G295100 chr3B 787677488 787678046 558 False 917.000000 917 96.243000 1 559 1 chr3B.!!$F1 558
11 TraesCS2A01G295100 chr6D 113911093 113911654 561 True 856.000000 856 94.316000 4 559 1 chr6D.!!$R1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 176 0.823356 GTGTGGAGCTGCTTTTGGGA 60.823 55.000 6.82 0.00 0.00 4.37 F
744 760 1.505425 TGCAGCATTATAGCGAGCAG 58.495 50.000 0.00 0.00 42.44 4.24 F
1896 2123 0.397535 ATTATGGGGCTGGCCAACTG 60.398 55.000 22.68 0.00 37.98 3.16 F
2706 2933 1.927487 TGACTTGCCTGATGCCAAAT 58.073 45.000 0.00 0.00 40.16 2.32 F
3832 4097 1.227527 CACCGTGGAGAAGTGTGCA 60.228 57.895 0.00 0.00 0.00 4.57 F
4939 5306 1.134098 CACAGGGCCCTATTGTACTGG 60.134 57.143 28.13 11.64 0.00 4.00 F
5100 5501 2.112507 GCGGGCCTGTATAACCCC 59.887 66.667 14.55 0.00 40.86 4.95 F
5101 5502 2.748513 GCGGGCCTGTATAACCCCA 61.749 63.158 14.55 0.00 40.86 4.96 F
6335 6774 0.107456 ACTCTGGTTGTCTGGCACTG 59.893 55.000 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 2123 1.508088 CCCATTGCTTCTTGCGTCC 59.492 57.895 0.00 0.0 46.63 4.79 R
2526 2753 1.133792 CCCCTGGCACGGAGATTTAAT 60.134 52.381 3.91 0.0 36.31 1.40 R
3612 3874 0.110486 TTCTTCAACCAGACCAGCCC 59.890 55.000 0.00 0.0 0.00 5.19 R
4258 4526 0.101219 GCACGGATTGATTGGAAGGC 59.899 55.000 0.00 0.0 0.00 4.35 R
5079 5480 1.692173 GGTTATACAGGCCCGCCTCA 61.692 60.000 4.92 0.0 46.28 3.86 R
6294 6733 2.035530 ACCTAGCTTCAGATTGCAGC 57.964 50.000 0.00 0.0 36.89 5.25 R
6335 6774 2.281970 ACCGGAAAGGCGGAAACC 60.282 61.111 9.46 0.0 46.52 3.27 R
6353 6792 3.071479 TGGTTTGGCTCGACTTCAATAC 58.929 45.455 0.00 0.0 0.00 1.89 R
7994 8444 0.749454 GGCCCTAGCAACATGGAGTG 60.749 60.000 0.00 0.0 42.56 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.355010 AGAAGCTGTGAACCTTGCTT 57.645 45.000 0.00 0.00 46.69 3.91
167 176 0.823356 GTGTGGAGCTGCTTTTGGGA 60.823 55.000 6.82 0.00 0.00 4.37
199 208 2.095059 GCATGTGAACCAGCTGTTTAGG 60.095 50.000 13.81 0.00 37.29 2.69
484 497 6.636562 TGCCAAAATTTTCTCTTTACGGTA 57.363 33.333 0.00 0.00 0.00 4.02
559 574 5.604758 TCAAATGTCAACCAAAATGTCCA 57.395 34.783 0.00 0.00 0.00 4.02
560 575 5.982356 TCAAATGTCAACCAAAATGTCCAA 58.018 33.333 0.00 0.00 0.00 3.53
561 576 6.590068 TCAAATGTCAACCAAAATGTCCAAT 58.410 32.000 0.00 0.00 0.00 3.16
562 577 7.730084 TCAAATGTCAACCAAAATGTCCAATA 58.270 30.769 0.00 0.00 0.00 1.90
563 578 8.206867 TCAAATGTCAACCAAAATGTCCAATAA 58.793 29.630 0.00 0.00 0.00 1.40
564 579 8.497554 CAAATGTCAACCAAAATGTCCAATAAG 58.502 33.333 0.00 0.00 0.00 1.73
565 580 6.968263 TGTCAACCAAAATGTCCAATAAGA 57.032 33.333 0.00 0.00 0.00 2.10
566 581 7.537596 TGTCAACCAAAATGTCCAATAAGAT 57.462 32.000 0.00 0.00 0.00 2.40
567 582 7.961351 TGTCAACCAAAATGTCCAATAAGATT 58.039 30.769 0.00 0.00 0.00 2.40
603 618 9.337396 TGTACCACATATGAATGGAGAATAAAC 57.663 33.333 17.03 5.98 39.46 2.01
631 647 5.187186 TCCTAGTTTGGTCCAGTAAGTGATC 59.813 44.000 0.00 0.00 0.00 2.92
706 722 6.959671 TTTTTGTTGTTGCTTCCTTTGTAG 57.040 33.333 0.00 0.00 0.00 2.74
738 754 5.636543 GGGAAAATCATTGCAGCATTATAGC 59.363 40.000 0.00 0.00 0.00 2.97
744 760 1.505425 TGCAGCATTATAGCGAGCAG 58.495 50.000 0.00 0.00 42.44 4.24
763 779 3.737850 CAGCTCTACCAATCCAAGATCC 58.262 50.000 0.00 0.00 0.00 3.36
809 825 5.565455 TCCACTAACATGATGCATGGATA 57.435 39.130 2.46 4.32 45.16 2.59
812 828 6.262944 TCCACTAACATGATGCATGGATAAAC 59.737 38.462 2.46 0.00 45.16 2.01
829 845 5.770162 GGATAAACGAATCCAAATCCATCCT 59.230 40.000 10.12 0.00 44.26 3.24
830 846 4.989279 AAACGAATCCAAATCCATCCTG 57.011 40.909 0.00 0.00 0.00 3.86
846 862 4.201950 CCATCCTGGTTTAGCTTGAATTCG 60.202 45.833 0.00 0.00 31.35 3.34
1209 1233 7.867403 CCAGGATCATTATTTGGGATTTTAACG 59.133 37.037 0.00 0.00 0.00 3.18
1356 1380 5.815581 TCATTTTTGGCTCCTGTATGTACT 58.184 37.500 0.00 0.00 0.00 2.73
1410 1434 6.223852 TCAGTTCAGTCATTTACTCAACCTC 58.776 40.000 0.00 0.00 39.86 3.85
1414 1438 9.256228 AGTTCAGTCATTTACTCAACCTCTATA 57.744 33.333 0.00 0.00 39.86 1.31
1436 1460 4.362677 ACCTAGAGCATTGGTTTCTCCTA 58.637 43.478 0.00 0.00 32.59 2.94
1440 1464 7.102346 CCTAGAGCATTGGTTTCTCCTATATG 58.898 42.308 0.00 0.00 37.07 1.78
1441 1465 5.312079 AGAGCATTGGTTTCTCCTATATGC 58.688 41.667 0.00 0.00 41.62 3.14
1541 1565 1.928868 CTTCATGGGAAAGGGCAACT 58.071 50.000 0.00 0.00 31.35 3.16
1822 2048 6.863126 GCCTTGCGTTCTAATATTATGCATTT 59.137 34.615 3.54 0.00 0.00 2.32
1896 2123 0.397535 ATTATGGGGCTGGCCAACTG 60.398 55.000 22.68 0.00 37.98 3.16
1997 2224 8.392372 AGTTTCTACAAAAATCTGGTAGGTTC 57.608 34.615 0.00 0.00 36.14 3.62
2269 2496 5.477984 TGCTCTTTTTATTCAGCAGTCCAAT 59.522 36.000 0.00 0.00 36.96 3.16
2272 2499 6.158598 TCTTTTTATTCAGCAGTCCAATTGC 58.841 36.000 0.00 0.00 41.83 3.56
2323 2550 2.945668 GGTTCAGTTCTCAAGCACTGTT 59.054 45.455 9.17 0.00 39.68 3.16
2343 2570 9.528018 CACTGTTTGGTCTGTTTATGTTATTTT 57.472 29.630 0.00 0.00 0.00 1.82
2421 2648 8.935844 TGTACATTAGTGTAGCTCAAGAAATTG 58.064 33.333 0.00 0.00 41.29 2.32
2526 2753 2.839975 TCAACGTGTGATGGCTGTTTA 58.160 42.857 0.00 0.00 0.00 2.01
2531 2758 5.950758 ACGTGTGATGGCTGTTTATTAAA 57.049 34.783 0.00 0.00 0.00 1.52
2706 2933 1.927487 TGACTTGCCTGATGCCAAAT 58.073 45.000 0.00 0.00 40.16 2.32
2708 2935 3.018856 TGACTTGCCTGATGCCAAATAG 58.981 45.455 0.00 0.00 40.16 1.73
2742 2969 3.814625 TCTGATTGTTGGTTGTGCACTA 58.185 40.909 19.41 7.83 0.00 2.74
2824 3051 9.938280 TGGTACATGGTAAATACAATCTATAGC 57.062 33.333 0.00 0.00 0.00 2.97
2857 3085 7.393841 TGTGCAGAATGTGAAAATATGATCA 57.606 32.000 0.00 0.00 39.31 2.92
2907 3135 9.060347 CCATTGATTACAATATAGCTGTGAAGT 57.940 33.333 0.00 0.00 43.76 3.01
2932 3160 6.116806 AGTAACATGCATTTATCCACCGTTA 58.883 36.000 0.00 0.00 0.00 3.18
3224 3452 7.483307 TGAGTTTGAAAAGGATTCTCAGTTTG 58.517 34.615 0.00 0.00 0.00 2.93
3346 3574 4.279169 TCCTTCTTTGCTCTGACAAATTGG 59.721 41.667 0.00 8.12 38.76 3.16
3388 3616 7.011482 CCGTTCAAAGAGATAACCAAATAGGAG 59.989 40.741 0.00 0.00 41.22 3.69
3438 3666 5.335976 GGCCTTGCTAGTAATTATGCCAATC 60.336 44.000 14.35 0.00 36.40 2.67
3610 3872 6.148480 GGATGCTGTATCAGATTATCCACAAC 59.852 42.308 8.01 0.00 37.64 3.32
3612 3874 6.051074 TGCTGTATCAGATTATCCACAACTG 58.949 40.000 0.66 0.00 32.44 3.16
3649 3911 8.604890 GTTGAAGAAGTATAAGCCTTGTGATAC 58.395 37.037 0.00 0.00 0.00 2.24
3682 3944 5.590663 TGTTTGTTACTGACTGCACCAATAA 59.409 36.000 0.00 0.00 0.00 1.40
3706 3971 4.041321 AGTCATCATGATCCACACCCATAG 59.959 45.833 4.86 0.00 0.00 2.23
3832 4097 1.227527 CACCGTGGAGAAGTGTGCA 60.228 57.895 0.00 0.00 0.00 4.57
3901 4167 3.681593 AGCAAACAAACGATAGGCCTAA 58.318 40.909 18.42 0.00 43.77 2.69
3953 4219 5.261216 CCACCCCATTACATAGAGTGTTTT 58.739 41.667 0.00 0.00 42.29 2.43
4024 4290 6.723298 ATTGGAACACAAATTGGACAGTAA 57.277 33.333 0.00 0.00 43.46 2.24
4218 4486 2.047830 AGTTCTTCTCCTTGTCCGGTT 58.952 47.619 0.00 0.00 0.00 4.44
4258 4526 8.657074 TCTTGGTTATGGTTATTTAGATGTCG 57.343 34.615 0.00 0.00 0.00 4.35
4352 4620 6.994221 TGCTTATGTCTAGTTAATCCTAGCC 58.006 40.000 0.00 0.00 35.43 3.93
4363 4631 1.415200 ATCCTAGCCGTTCCTTCTCC 58.585 55.000 0.00 0.00 0.00 3.71
4447 4715 3.618690 AGAGAAGGAGAAAACCCGATG 57.381 47.619 0.00 0.00 0.00 3.84
4544 4815 8.167605 TCTCTACGAAACCTATCATCCTTTAG 57.832 38.462 0.00 0.00 0.00 1.85
4562 4833 9.753674 ATCCTTTAGATGTTTCAACCTAATTCA 57.246 29.630 0.00 0.00 32.41 2.57
4570 4841 8.986477 ATGTTTCAACCTAATTCACAATTAGC 57.014 30.769 9.61 0.00 45.73 3.09
4634 4905 9.271828 CACAATGTATAAGCATGTTATCTACCA 57.728 33.333 0.00 0.00 0.00 3.25
4637 4908 7.004555 TGTATAAGCATGTTATCTACCAGGG 57.995 40.000 0.00 0.00 0.00 4.45
4701 4972 7.645058 ACTATACCATTCATTGTCAAAAGGG 57.355 36.000 0.22 0.22 0.00 3.95
4705 4976 6.438186 ACCATTCATTGTCAAAAGGGAAAT 57.562 33.333 7.51 0.00 0.00 2.17
4736 5007 7.029563 AGAATTTTCAGCATTAAAGCTAACCG 58.970 34.615 4.64 0.00 44.54 4.44
4744 5015 5.093457 GCATTAAAGCTAACCGTCCTTTTC 58.907 41.667 0.00 0.00 31.78 2.29
4745 5016 5.637809 CATTAAAGCTAACCGTCCTTTTCC 58.362 41.667 0.00 0.00 31.78 3.13
4823 5095 6.721208 TGTCTGGGATTTGCTCTTAAAAAGAT 59.279 34.615 0.00 0.00 36.82 2.40
4938 5305 1.559682 ACACAGGGCCCTATTGTACTG 59.440 52.381 29.15 17.27 0.00 2.74
4939 5306 1.134098 CACAGGGCCCTATTGTACTGG 60.134 57.143 28.13 11.64 0.00 4.00
4968 5337 2.483014 TGACCACCGATTTAACCAGG 57.517 50.000 0.00 0.00 0.00 4.45
4977 5346 6.096282 CCACCGATTTAACCAGGAAAATATGT 59.904 38.462 0.00 0.00 0.00 2.29
5079 5480 5.741011 TGGCCAAAGTTAGACTCGAAATAT 58.259 37.500 0.61 0.00 0.00 1.28
5082 5483 6.018669 GGCCAAAGTTAGACTCGAAATATGAG 60.019 42.308 0.00 0.00 39.40 2.90
5100 5501 2.112507 GCGGGCCTGTATAACCCC 59.887 66.667 14.55 0.00 40.86 4.95
5101 5502 2.748513 GCGGGCCTGTATAACCCCA 61.749 63.158 14.55 0.00 40.86 4.96
5125 5526 7.493971 CCAACCAGAGAGTAAATCATAAGACAG 59.506 40.741 0.00 0.00 0.00 3.51
5167 5568 4.626172 GTCCGGTCTTTTCTTGAGTATGTC 59.374 45.833 0.00 0.00 0.00 3.06
5221 5622 7.687941 AAACAAGGGAACTGTAACTATGATG 57.312 36.000 0.00 0.00 42.68 3.07
5567 5997 3.392285 TCCTGTGATATACTGGCTTGCAT 59.608 43.478 0.00 0.00 45.30 3.96
5651 6083 3.615496 GTCAATTTGCAGATGTTCCATGC 59.385 43.478 0.00 0.00 40.40 4.06
5895 6331 4.914177 TTCCTCCCTAAATTGTAACGGT 57.086 40.909 0.00 0.00 0.00 4.83
6086 6524 7.498070 GTGCAACTCTACAAGAAAATTATGC 57.502 36.000 0.00 0.00 0.00 3.14
6273 6712 6.189036 GAGCTATTAGGTCCCTATTTTGGT 57.811 41.667 11.10 0.00 36.78 3.67
6294 6733 4.571176 GGTAGGCCTGTTTTATCTTCTTCG 59.429 45.833 17.99 0.00 0.00 3.79
6335 6774 0.107456 ACTCTGGTTGTCTGGCACTG 59.893 55.000 0.00 0.00 0.00 3.66
6371 6810 3.071479 GGTGTATTGAAGTCGAGCCAAA 58.929 45.455 0.00 0.00 0.00 3.28
6417 6856 2.909006 TCCAAAATGCTCTCAGGACTCT 59.091 45.455 0.00 0.00 0.00 3.24
6418 6857 3.008330 CCAAAATGCTCTCAGGACTCTG 58.992 50.000 0.00 0.00 42.21 3.35
6653 7093 6.058553 ACAGGAGAGAAATGTTCATGATCA 57.941 37.500 8.86 8.86 0.00 2.92
6699 7141 7.333672 AGACTCGATAAAACCAAAGTTATCACC 59.666 37.037 0.00 0.00 36.80 4.02
6793 7235 2.170607 GTGGTAGAAGCAAGGCTATGGA 59.829 50.000 0.00 0.00 38.25 3.41
6951 7393 6.184068 TGTATTTGCATTTCTAGTAAGCCCA 58.816 36.000 0.00 0.00 0.00 5.36
6954 7396 7.896383 ATTTGCATTTCTAGTAAGCCCATTA 57.104 32.000 0.00 0.00 0.00 1.90
7019 7461 0.535780 TTGCAGTGCCTCTTCAGGTG 60.536 55.000 13.72 0.00 42.74 4.00
7415 7858 0.389391 CCTCCACGTGACTGTGAGTT 59.611 55.000 19.30 0.00 42.55 3.01
7485 7928 5.453480 GCATTTCCTCCCTAAATCGTACTCT 60.453 44.000 0.00 0.00 0.00 3.24
7599 8042 2.859165 TTGAAGGCCTCAACTACAGG 57.141 50.000 5.23 0.00 39.20 4.00
7821 8264 2.194388 CTGGATGGCACTCTGCTGGT 62.194 60.000 0.00 0.00 44.28 4.00
7830 8273 1.209019 CACTCTGCTGGTTGGCTCTAT 59.791 52.381 0.00 0.00 0.00 1.98
7948 8398 2.945440 GCAAGATTGGTCATACTGGGCA 60.945 50.000 0.00 0.00 0.00 5.36
7949 8399 2.684881 CAAGATTGGTCATACTGGGCAC 59.315 50.000 0.00 0.00 0.00 5.01
7963 8413 3.205815 GGCACCTTGGCATGGATAA 57.794 52.632 24.70 0.00 43.14 1.75
7982 8432 6.371548 TGGATAAGATCTGTTGTGTTGCTTAC 59.628 38.462 0.00 0.00 0.00 2.34
7994 8444 6.126568 TGTGTTGCTTACCTTACTTTTGAC 57.873 37.500 0.00 0.00 0.00 3.18
8035 8485 6.832384 GGCCACTCCATTGATATGATATGAAT 59.168 38.462 0.00 0.00 33.37 2.57
8044 8494 9.403583 CATTGATATGATATGAATCCATCACCA 57.596 33.333 0.00 0.00 35.84 4.17
8086 8570 5.493133 TTGCGTATTTCTTGAACAAGTGT 57.507 34.783 13.15 4.96 39.38 3.55
8120 8604 2.480073 CCAAACAGGCAGACACACTTTG 60.480 50.000 0.00 0.00 0.00 2.77
8135 8619 3.130340 ACACTTTGGTGACGATTTTGCTT 59.870 39.130 3.06 0.00 45.61 3.91
8137 8621 4.026640 CACTTTGGTGACGATTTTGCTTTG 60.027 41.667 0.00 0.00 45.61 2.77
8138 8622 3.791973 TTGGTGACGATTTTGCTTTGT 57.208 38.095 0.00 0.00 0.00 2.83
8148 8662 5.070862 CGATTTTGCTTTGTACTGTACGTC 58.929 41.667 12.87 3.27 0.00 4.34
8152 8666 5.994887 TTGCTTTGTACTGTACGTCATTT 57.005 34.783 12.87 0.00 0.00 2.32
8189 8719 8.925161 ATATAATGTTTGTATGCGTGCTTTTT 57.075 26.923 0.00 0.00 0.00 1.94
8274 8804 1.327764 GCTCGCAGTTACAAGGCATAC 59.672 52.381 0.00 0.00 0.00 2.39
8303 8833 3.282157 CACAGCTGTGCGCCTGTT 61.282 61.111 32.39 0.00 39.39 3.16
8305 8835 2.050714 CAGCTGTGCGCCTGTTTG 60.051 61.111 4.18 0.00 40.39 2.93
8337 8896 4.975502 TGATTCGCATTATTTCGGCAATTC 59.024 37.500 0.00 0.00 0.00 2.17
8375 8934 1.729276 CTGTGTGCCTGTGTGGTTG 59.271 57.895 0.00 0.00 38.35 3.77
8405 8964 3.187637 GCCGCAGTTAACATTACAACAGA 59.812 43.478 8.61 0.00 0.00 3.41
8406 8965 4.708601 CCGCAGTTAACATTACAACAGAC 58.291 43.478 8.61 0.00 0.00 3.51
8407 8966 4.378046 CCGCAGTTAACATTACAACAGACC 60.378 45.833 8.61 0.00 0.00 3.85
8408 8967 4.212425 CGCAGTTAACATTACAACAGACCA 59.788 41.667 8.61 0.00 0.00 4.02
8410 8969 6.567701 CGCAGTTAACATTACAACAGACCAAT 60.568 38.462 8.61 0.00 0.00 3.16
8412 8971 7.651704 GCAGTTAACATTACAACAGACCAATTT 59.348 33.333 8.61 0.00 0.00 1.82
8420 9032 5.743636 ACAACAGACCAATTTGGCATAAT 57.256 34.783 15.49 0.00 42.67 1.28
8468 9085 9.793252 TTTATACTTGTCGTTAAGTCTACCATC 57.207 33.333 9.65 0.00 41.01 3.51
8515 9134 4.873827 TCTCTTGTGGCATTATCGTTAACC 59.126 41.667 0.00 0.00 0.00 2.85
8634 9286 0.823356 AACATGCTGCTTCCACCGTT 60.823 50.000 0.00 0.00 0.00 4.44
8799 9459 1.090625 CCGACCTCGTGATCTCTCGT 61.091 60.000 0.00 0.00 37.74 4.18
8883 9543 4.092383 GCAATGATGACAACCTGAAAATGC 59.908 41.667 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.682856 TCTTTTTGCTTGTGCTCTTCGT 59.317 40.909 0.00 0.00 40.48 3.85
40 41 4.257731 TGTAGTTGCGCATCATCCTAAAA 58.742 39.130 19.92 0.00 0.00 1.52
167 176 3.225104 GGTTCACATGCATATGGACCAT 58.775 45.455 27.54 12.67 38.66 3.55
484 497 9.334947 CAATATTTAGAGATCATGACCAACACT 57.665 33.333 0.00 0.00 0.00 3.55
603 618 1.978580 ACTGGACCAAACTAGGACTGG 59.021 52.381 0.00 0.00 36.24 4.00
706 722 5.120674 GCTGCAATGATTTTCCCTTTTACAC 59.879 40.000 0.00 0.00 0.00 2.90
738 754 0.461548 TGGATTGGTAGAGCTGCTCG 59.538 55.000 22.77 0.00 35.36 5.03
744 760 3.135530 ACAGGATCTTGGATTGGTAGAGC 59.864 47.826 9.90 0.00 0.00 4.09
763 779 9.191995 GGAAAACAAAATCTACCAACATAACAG 57.808 33.333 0.00 0.00 0.00 3.16
809 825 4.989279 CAGGATGGATTTGGATTCGTTT 57.011 40.909 0.00 0.00 0.00 3.60
829 845 4.630069 GCTAGACGAATTCAAGCTAAACCA 59.370 41.667 6.22 0.00 0.00 3.67
830 846 4.870991 AGCTAGACGAATTCAAGCTAAACC 59.129 41.667 15.88 3.22 41.56 3.27
872 888 1.375908 GATCAGGACAACAGGCGCA 60.376 57.895 10.83 0.00 0.00 6.09
874 890 1.522668 TTTGATCAGGACAACAGGCG 58.477 50.000 0.00 0.00 0.00 5.52
924 940 7.110155 ACAAAACAGAAGGTCTCAAAACTCTA 58.890 34.615 0.00 0.00 0.00 2.43
926 942 6.196079 ACAAAACAGAAGGTCTCAAAACTC 57.804 37.500 0.00 0.00 0.00 3.01
927 943 6.590234 AACAAAACAGAAGGTCTCAAAACT 57.410 33.333 0.00 0.00 0.00 2.66
928 944 7.652300 AAAACAAAACAGAAGGTCTCAAAAC 57.348 32.000 0.00 0.00 0.00 2.43
1209 1233 8.307483 TCATATAGTCCTATCTTGCTGCTAAAC 58.693 37.037 0.00 0.00 0.00 2.01
1394 1418 9.352191 TCTAGGTATAGAGGTTGAGTAAATGAC 57.648 37.037 0.00 0.00 32.93 3.06
1410 1434 6.268847 AGGAGAAACCAATGCTCTAGGTATAG 59.731 42.308 0.00 0.00 42.04 1.31
1414 1438 3.185455 AGGAGAAACCAATGCTCTAGGT 58.815 45.455 0.00 0.00 42.04 3.08
1440 1464 8.835467 TGTTGAGATGTAATTAAAATAAGCGC 57.165 30.769 0.00 0.00 0.00 5.92
1441 1465 9.438291 CCTGTTGAGATGTAATTAAAATAAGCG 57.562 33.333 0.00 0.00 0.00 4.68
1526 1550 2.514458 CAGTAGTTGCCCTTTCCCAT 57.486 50.000 0.00 0.00 0.00 4.00
1541 1565 5.409520 GTGATCTTGAACTTGTGATGCAGTA 59.590 40.000 0.00 0.00 0.00 2.74
1669 1694 2.957402 AAGATGTCAAGTTCCCTGCA 57.043 45.000 0.00 0.00 0.00 4.41
1822 2048 6.478512 AGCTGTTTCAAAAATTACCAGGAA 57.521 33.333 0.00 0.00 0.00 3.36
1896 2123 1.508088 CCCATTGCTTCTTGCGTCC 59.492 57.895 0.00 0.00 46.63 4.79
1997 2224 8.583765 CAGAATGCATTGATCAATATTTATGCG 58.416 33.333 20.32 7.14 40.81 4.73
2299 2526 1.261619 GTGCTTGAGAACTGAACCACG 59.738 52.381 0.00 0.00 0.00 4.94
2323 2550 9.362151 AGGAAGAAAATAACATAAACAGACCAA 57.638 29.630 0.00 0.00 0.00 3.67
2343 2570 4.480115 TGACTGACCTACAAAGAGGAAGA 58.520 43.478 0.00 0.00 39.15 2.87
2421 2648 2.600470 GGGGGTTCCAAGCACACC 60.600 66.667 0.00 0.00 36.92 4.16
2500 2727 2.485426 AGCCATCACACGTTGAAATCAG 59.515 45.455 4.87 0.00 37.92 2.90
2526 2753 1.133792 CCCCTGGCACGGAGATTTAAT 60.134 52.381 3.91 0.00 36.31 1.40
2531 2758 4.741239 ACCCCCTGGCACGGAGAT 62.741 66.667 3.91 0.00 36.31 2.75
2742 2969 8.285891 TCAATTTATAGTATGGACATTTGGGGT 58.714 33.333 0.00 0.00 0.00 4.95
2823 3050 4.452114 TCACATTCTGCACATATATTCGGC 59.548 41.667 0.00 0.00 0.00 5.54
2824 3051 6.544038 TTCACATTCTGCACATATATTCGG 57.456 37.500 0.00 0.00 0.00 4.30
2864 3092 1.689984 TGGCTCAAAGCATGTGAACA 58.310 45.000 0.86 0.00 44.75 3.18
2907 3135 5.676552 ACGGTGGATAAATGCATGTTACTA 58.323 37.500 0.00 0.00 0.00 1.82
2913 3141 7.202016 AGTAATAACGGTGGATAAATGCATG 57.798 36.000 0.00 0.00 0.00 4.06
3224 3452 1.003718 AGCGTGACCTTTACCTGGC 60.004 57.895 0.00 0.00 0.00 4.85
3346 3574 5.934935 TGAACGGTGGAAATCTAAACTTC 57.065 39.130 0.00 0.00 0.00 3.01
3363 3591 7.764443 TCTCCTATTTGGTTATCTCTTTGAACG 59.236 37.037 0.00 0.00 37.07 3.95
3388 3616 7.225538 CCAACACTGTAAATGGATGATAGAGTC 59.774 40.741 0.74 0.00 34.82 3.36
3438 3666 4.038042 TCTGATACAAAGATCTGGCTACGG 59.962 45.833 0.00 0.00 0.00 4.02
3589 3850 6.536731 CAGTTGTGGATAATCTGATACAGC 57.463 41.667 0.00 0.00 0.00 4.40
3610 3872 0.607489 CTTCAACCAGACCAGCCCAG 60.607 60.000 0.00 0.00 0.00 4.45
3612 3874 0.110486 TTCTTCAACCAGACCAGCCC 59.890 55.000 0.00 0.00 0.00 5.19
3649 3911 7.222417 TGCAGTCAGTAACAAACAAAATTCATG 59.778 33.333 0.00 0.00 0.00 3.07
3658 3920 2.992593 TGGTGCAGTCAGTAACAAACA 58.007 42.857 0.00 0.00 0.00 2.83
3682 3944 2.577563 TGGGTGTGGATCATGATGACTT 59.422 45.455 14.30 0.00 0.00 3.01
3706 3971 9.481340 AAAGAATTTGAAAATCCTAGTTTCAGC 57.519 29.630 6.98 1.35 43.76 4.26
3901 4167 8.896744 ACGTGATGAACAAATCAATCATAGAAT 58.103 29.630 0.00 0.00 42.54 2.40
3953 4219 5.129634 TCAATTTGAGCAAGTGTGTAAGGA 58.870 37.500 0.00 0.00 0.00 3.36
4057 4323 4.250464 CTCGCAGTGTAGGTAATTTTCCA 58.750 43.478 0.00 0.00 0.00 3.53
4152 4418 3.074390 CCTATGGTGCCATAAAGATCCCA 59.926 47.826 11.57 0.00 38.30 4.37
4155 4421 7.624549 TCTATTCCTATGGTGCCATAAAGATC 58.375 38.462 11.57 0.00 38.30 2.75
4156 4422 7.574021 TCTATTCCTATGGTGCCATAAAGAT 57.426 36.000 11.57 8.14 38.30 2.40
4200 4468 1.766496 ACAACCGGACAAGGAGAAGAA 59.234 47.619 9.46 0.00 34.73 2.52
4201 4469 1.343465 GACAACCGGACAAGGAGAAGA 59.657 52.381 9.46 0.00 34.73 2.87
4202 4470 1.608283 GGACAACCGGACAAGGAGAAG 60.608 57.143 9.46 0.00 34.73 2.85
4218 4486 8.265055 CCATAACCAAGATAGTTTAGAAGGACA 58.735 37.037 0.00 0.00 0.00 4.02
4258 4526 0.101219 GCACGGATTGATTGGAAGGC 59.899 55.000 0.00 0.00 0.00 4.35
4352 4620 9.765795 ATAATATTTAGAAGTGGAGAAGGAACG 57.234 33.333 0.00 0.00 0.00 3.95
4390 4658 3.429410 GCCCATCCTAGCATGTTTTGTTC 60.429 47.826 0.00 0.00 0.00 3.18
4400 4668 1.690283 TGCTGAGCCCATCCTAGCA 60.690 57.895 0.23 0.00 41.61 3.49
4447 4715 9.520204 CCATTTTGACAATGAATGGTATAGTTC 57.480 33.333 18.01 0.00 42.99 3.01
4488 4758 8.125978 AGATGGTTAGATTCAATGCTGAAAAA 57.874 30.769 0.00 0.00 44.64 1.94
4544 4815 9.076596 GCTAATTGTGAATTAGGTTGAAACATC 57.923 33.333 14.82 0.00 46.65 3.06
4562 4833 3.350219 AATCCCAGACACGCTAATTGT 57.650 42.857 0.00 0.00 0.00 2.71
4570 4841 1.813513 AAGAGCAAATCCCAGACACG 58.186 50.000 0.00 0.00 0.00 4.49
4634 4905 8.901472 TGTATAGCATAGTTATCAAGATCCCT 57.099 34.615 0.00 0.00 0.00 4.20
4745 5016 5.850046 AAAGATGATAGGTTCATAGGGGG 57.150 43.478 0.00 0.00 45.29 5.40
4848 5120 8.059565 AGTTAGTAAGATCCCTGGTAGATAGT 57.940 38.462 0.00 0.00 0.00 2.12
5054 5455 1.968493 TCGAGTCTAACTTTGGCCAGT 59.032 47.619 5.11 0.00 0.00 4.00
5055 5456 2.743636 TCGAGTCTAACTTTGGCCAG 57.256 50.000 5.11 0.00 0.00 4.85
5063 5464 4.261656 CCGCCTCATATTTCGAGTCTAACT 60.262 45.833 0.00 0.00 0.00 2.24
5079 5480 1.692173 GGTTATACAGGCCCGCCTCA 61.692 60.000 4.92 0.00 46.28 3.86
5082 5483 2.112507 GGGTTATACAGGCCCGCC 59.887 66.667 0.00 0.00 32.16 6.13
5096 5497 3.256704 TGATTTACTCTCTGGTTGGGGT 58.743 45.455 0.00 0.00 0.00 4.95
5100 5501 8.253810 TCTGTCTTATGATTTACTCTCTGGTTG 58.746 37.037 0.00 0.00 0.00 3.77
5101 5502 8.367660 TCTGTCTTATGATTTACTCTCTGGTT 57.632 34.615 0.00 0.00 0.00 3.67
5125 5526 4.267928 CGGACTCAATCAACGGTTAGAATC 59.732 45.833 0.00 0.00 0.00 2.52
5356 5784 8.488651 ACGAAATTTACCTACTACCAGAATTG 57.511 34.615 0.00 0.00 0.00 2.32
5546 5976 3.198409 TGCAAGCCAGTATATCACAGG 57.802 47.619 0.00 0.00 36.89 4.00
5567 5997 9.190858 CAAACATTAGCAAGCAAGTAATTAACA 57.809 29.630 0.00 0.00 0.00 2.41
5626 6058 5.273674 TGGAACATCTGCAAATTGACAAA 57.726 34.783 0.00 0.00 0.00 2.83
5627 6059 4.933505 TGGAACATCTGCAAATTGACAA 57.066 36.364 0.00 0.00 0.00 3.18
5651 6083 7.076842 ACAATGTGTATAAAACTGCTGCTAG 57.923 36.000 0.00 0.00 0.00 3.42
5715 6147 4.667262 CACTGAGAACTTAGATCTGGACG 58.333 47.826 5.18 0.00 0.00 4.79
5895 6331 7.178274 AGTTTATCCATCAAAATTGTACTGCCA 59.822 33.333 0.00 0.00 0.00 4.92
6045 6483 9.672673 AGAGTTGCACTTAATTGATGTAGTAAT 57.327 29.630 0.00 0.00 0.00 1.89
6047 6485 9.582431 GTAGAGTTGCACTTAATTGATGTAGTA 57.418 33.333 0.00 0.00 0.00 1.82
6048 6486 8.094548 TGTAGAGTTGCACTTAATTGATGTAGT 58.905 33.333 0.00 0.00 0.00 2.73
6086 6524 3.735591 TCCCAGACAAAAGTTTCCTACG 58.264 45.455 0.00 0.00 0.00 3.51
6096 6534 2.375174 ACCAGCTGTATCCCAGACAAAA 59.625 45.455 13.81 0.00 44.49 2.44
6261 6700 2.568979 ACAGGCCTACCAAAATAGGGA 58.431 47.619 3.98 0.00 41.96 4.20
6273 6712 4.081087 AGCGAAGAAGATAAAACAGGCCTA 60.081 41.667 3.98 0.00 0.00 3.93
6294 6733 2.035530 ACCTAGCTTCAGATTGCAGC 57.964 50.000 0.00 0.00 36.89 5.25
6335 6774 2.281970 ACCGGAAAGGCGGAAACC 60.282 61.111 9.46 0.00 46.52 3.27
6353 6792 3.071479 TGGTTTGGCTCGACTTCAATAC 58.929 45.455 0.00 0.00 0.00 1.89
6371 6810 3.447229 CCCAGAACTCAAAACTTGTTGGT 59.553 43.478 0.00 0.00 0.00 3.67
6417 6856 7.624549 AGCTTCTCTTCTTCCATATTAACACA 58.375 34.615 0.00 0.00 0.00 3.72
6418 6857 9.601217 TTAGCTTCTCTTCTTCCATATTAACAC 57.399 33.333 0.00 0.00 0.00 3.32
6671 7111 9.582431 TGATAACTTTGGTTTTATCGAGTCTAG 57.418 33.333 0.00 0.00 37.47 2.43
6672 7112 9.362539 GTGATAACTTTGGTTTTATCGAGTCTA 57.637 33.333 0.00 0.00 37.47 2.59
6673 7113 7.333672 GGTGATAACTTTGGTTTTATCGAGTCT 59.666 37.037 0.00 0.00 37.47 3.24
6674 7114 7.461918 GGTGATAACTTTGGTTTTATCGAGTC 58.538 38.462 0.00 0.00 37.47 3.36
6675 7115 6.091713 CGGTGATAACTTTGGTTTTATCGAGT 59.908 38.462 0.00 0.00 37.47 4.18
6676 7116 6.311935 TCGGTGATAACTTTGGTTTTATCGAG 59.688 38.462 0.00 0.00 37.47 4.04
6677 7117 6.164876 TCGGTGATAACTTTGGTTTTATCGA 58.835 36.000 0.00 0.00 37.47 3.59
6678 7118 6.411630 TCGGTGATAACTTTGGTTTTATCG 57.588 37.500 0.00 0.00 37.47 2.92
6679 7119 8.036273 TCTTCGGTGATAACTTTGGTTTTATC 57.964 34.615 0.00 0.00 36.92 1.75
6699 7141 3.346430 TGATCTTCTGCTCGATCTTCG 57.654 47.619 0.00 0.00 42.10 3.79
6923 7365 7.415653 GGCTTACTAGAAATGCAAATACAAGCT 60.416 37.037 0.00 0.00 35.16 3.74
7019 7461 9.003658 ACTGCATGGTAGCAAAATATATACTTC 57.996 33.333 0.00 0.00 45.13 3.01
7192 7635 2.253758 CCGGTTCCAGTGCACTGTG 61.254 63.158 37.55 29.44 42.27 3.66
7599 8042 7.174599 ACCATACATACTACTACATCCGTTCTC 59.825 40.741 0.00 0.00 0.00 2.87
7821 8264 5.219739 AGGATCTGAAACCTATAGAGCCAA 58.780 41.667 10.00 0.00 46.62 4.52
7830 8273 4.471386 CCTCAAGGAAGGATCTGAAACCTA 59.529 45.833 7.09 0.00 38.87 3.08
7948 8398 3.461085 ACAGATCTTATCCATGCCAAGGT 59.539 43.478 0.00 0.00 0.00 3.50
7949 8399 4.096190 ACAGATCTTATCCATGCCAAGG 57.904 45.455 0.00 0.00 0.00 3.61
7963 8413 4.357918 AGGTAAGCAACACAACAGATCT 57.642 40.909 0.00 0.00 0.00 2.75
7982 8432 5.762045 CAACATGGAGTGTCAAAAGTAAGG 58.238 41.667 0.00 0.00 41.14 2.69
7994 8444 0.749454 GGCCCTAGCAACATGGAGTG 60.749 60.000 0.00 0.00 42.56 3.51
8035 8485 4.949238 CCATATTCAACAAGTGGTGATGGA 59.051 41.667 10.67 0.00 40.24 3.41
8044 8494 4.142093 GCAATCCTGCCATATTCAACAAGT 60.142 41.667 0.00 0.00 43.26 3.16
8068 8518 9.562583 TGTACAAAACACTTGTTCAAGAAATAC 57.437 29.630 17.75 10.31 37.25 1.89
8086 8570 4.065321 CCTGTTTGGGCAATGTACAAAA 57.935 40.909 0.00 0.00 36.05 2.44
8120 8604 4.219033 CAGTACAAAGCAAAATCGTCACC 58.781 43.478 0.00 0.00 0.00 4.02
8135 8619 8.422973 ACAAGTAAAAATGACGTACAGTACAA 57.577 30.769 11.37 0.00 0.00 2.41
8213 8743 7.861629 AGTCCTGTGTTTCATGATAAATAGGA 58.138 34.615 15.07 15.07 0.00 2.94
8216 8746 9.056005 GCATAGTCCTGTGTTTCATGATAAATA 57.944 33.333 0.00 0.00 0.00 1.40
8274 8804 1.667191 AGCTGTGTTGCTCTCTGCG 60.667 57.895 0.00 0.00 46.63 5.18
8303 8833 3.921119 ATGCGAATCAGAAAGTTGCAA 57.079 38.095 0.00 0.00 34.21 4.08
8305 8835 6.290748 CGAAATAATGCGAATCAGAAAGTTGC 60.291 38.462 0.00 0.00 0.00 4.17
8337 8896 9.935682 CACACAGCTACAAGTATAAAATAATGG 57.064 33.333 0.00 0.00 0.00 3.16
8464 9081 7.514784 TCAGCAAATTAATGGTATGAGATGG 57.485 36.000 0.00 0.00 0.00 3.51
8468 9085 9.064706 AGAGAATCAGCAAATTAATGGTATGAG 57.935 33.333 0.00 0.00 37.82 2.90
8540 9159 0.443869 CCAAATCGCTGAACGTCAGG 59.556 55.000 14.19 6.97 44.43 3.86
8799 9459 6.945218 TGTTTTACTAGAGGGCGGTAAATTA 58.055 36.000 0.00 0.00 36.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.