Multiple sequence alignment - TraesCS2A01G293900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G293900 chr2A 100.000 6024 0 0 1 6024 505085899 505079876 0.000000e+00 11125
1 TraesCS2A01G293900 chr2A 94.350 885 50 0 2161 3045 578391362 578390478 0.000000e+00 1358
2 TraesCS2A01G293900 chr2A 94.237 885 48 3 2161 3042 624463114 624462230 0.000000e+00 1349
3 TraesCS2A01G293900 chr2A 94.312 879 50 0 2161 3039 101855737 101854859 0.000000e+00 1347
4 TraesCS2A01G293900 chr2A 94.111 883 52 0 2161 3043 421218401 421219283 0.000000e+00 1343
5 TraesCS2A01G293900 chr2A 83.814 451 40 20 5589 6024 505208555 505208987 1.220000e-106 398
6 TraesCS2A01G293900 chr2D 93.244 2176 112 25 11 2167 373678960 373676801 0.000000e+00 3171
7 TraesCS2A01G293900 chr2D 86.653 974 67 32 3846 4774 373675843 373674888 0.000000e+00 1020
8 TraesCS2A01G293900 chr2D 86.795 621 41 21 5414 6024 373654256 373653667 0.000000e+00 654
9 TraesCS2A01G293900 chr2D 86.482 614 41 23 4780 5366 373674774 373674176 2.370000e-178 636
10 TraesCS2A01G293900 chr2D 91.822 428 25 4 5597 6024 373750175 373750592 6.730000e-164 588
11 TraesCS2A01G293900 chr2D 91.667 216 17 1 3110 3325 373676442 373676228 1.270000e-76 298
12 TraesCS2A01G293900 chr2D 91.919 198 11 4 3354 3550 373676227 373676034 7.690000e-69 272
13 TraesCS2A01G293900 chr2D 90.503 179 12 5 3618 3792 373676009 373675832 1.310000e-56 231
14 TraesCS2A01G293900 chr2D 84.615 130 6 5 5414 5533 373750014 373750139 3.810000e-22 117
15 TraesCS2A01G293900 chr2B 94.837 1840 61 16 11 1840 443159887 443158072 0.000000e+00 2841
16 TraesCS2A01G293900 chr2B 85.872 814 63 31 3846 4630 443156755 443155965 0.000000e+00 819
17 TraesCS2A01G293900 chr2B 85.805 627 39 25 5414 6024 443148951 443148359 2.390000e-173 619
18 TraesCS2A01G293900 chr2B 85.144 626 40 25 5414 6024 443223074 443223661 5.200000e-165 592
19 TraesCS2A01G293900 chr2B 88.889 414 20 13 4780 5173 443155108 443154701 2.520000e-133 486
20 TraesCS2A01G293900 chr2B 92.434 304 22 1 1864 2167 443158011 443157709 3.330000e-117 433
21 TraesCS2A01G293900 chr2B 89.815 216 21 1 3110 3325 443157350 443157136 5.950000e-70 276
22 TraesCS2A01G293900 chr2B 93.407 182 9 2 3366 3547 443157124 443156946 3.580000e-67 267
23 TraesCS2A01G293900 chr2B 91.573 178 11 4 3618 3792 443156920 443156744 6.030000e-60 243
24 TraesCS2A01G293900 chr2B 88.742 151 15 2 4624 4774 443155360 443155212 3.710000e-42 183
25 TraesCS2A01G293900 chr2B 78.365 208 28 11 5175 5366 443154667 443154461 1.060000e-22 119
26 TraesCS2A01G293900 chr4D 94.463 885 43 4 2161 3042 65943530 65944411 0.000000e+00 1358
27 TraesCS2A01G293900 chr4D 87.342 158 18 2 4258 4415 463340082 463339927 4.800000e-41 180
28 TraesCS2A01G293900 chr5D 94.463 885 41 4 2161 3042 277251339 277252218 0.000000e+00 1356
29 TraesCS2A01G293900 chr3D 94.357 886 46 4 2161 3042 313293244 313292359 0.000000e+00 1356
30 TraesCS2A01G293900 chr5A 94.318 880 50 0 2161 3040 68818632 68817753 0.000000e+00 1349
31 TraesCS2A01G293900 chr5A 94.218 882 49 2 2161 3042 222607156 222606277 0.000000e+00 1345
32 TraesCS2A01G293900 chr4B 88.679 159 16 2 4258 4416 578675616 578675460 6.160000e-45 193
33 TraesCS2A01G293900 chr4B 85.093 161 16 6 4256 4415 578490721 578490568 2.250000e-34 158
34 TraesCS2A01G293900 chr4A 87.037 162 19 2 4255 4416 6343097 6343256 1.330000e-41 182
35 TraesCS2A01G293900 chr4A 86.503 163 17 4 4254 4415 6489978 6490136 2.230000e-39 174
36 TraesCS2A01G293900 chr4A 86.452 155 19 2 4255 4409 6278256 6278408 1.040000e-37 169
37 TraesCS2A01G293900 chr6B 89.855 138 11 3 4281 4416 518390076 518390212 2.230000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G293900 chr2A 505079876 505085899 6023 True 11125.000000 11125 100.0000 1 6024 1 chr2A.!!$R2 6023
1 TraesCS2A01G293900 chr2A 578390478 578391362 884 True 1358.000000 1358 94.3500 2161 3045 1 chr2A.!!$R3 884
2 TraesCS2A01G293900 chr2A 624462230 624463114 884 True 1349.000000 1349 94.2370 2161 3042 1 chr2A.!!$R4 881
3 TraesCS2A01G293900 chr2A 101854859 101855737 878 True 1347.000000 1347 94.3120 2161 3039 1 chr2A.!!$R1 878
4 TraesCS2A01G293900 chr2A 421218401 421219283 882 False 1343.000000 1343 94.1110 2161 3043 1 chr2A.!!$F1 882
5 TraesCS2A01G293900 chr2D 373674176 373678960 4784 True 938.000000 3171 90.0780 11 5366 6 chr2D.!!$R2 5355
6 TraesCS2A01G293900 chr2D 373653667 373654256 589 True 654.000000 654 86.7950 5414 6024 1 chr2D.!!$R1 610
7 TraesCS2A01G293900 chr2D 373750014 373750592 578 False 352.500000 588 88.2185 5414 6024 2 chr2D.!!$F1 610
8 TraesCS2A01G293900 chr2B 443154461 443159887 5426 True 629.666667 2841 89.3260 11 5366 9 chr2B.!!$R2 5355
9 TraesCS2A01G293900 chr2B 443148359 443148951 592 True 619.000000 619 85.8050 5414 6024 1 chr2B.!!$R1 610
10 TraesCS2A01G293900 chr2B 443223074 443223661 587 False 592.000000 592 85.1440 5414 6024 1 chr2B.!!$F1 610
11 TraesCS2A01G293900 chr4D 65943530 65944411 881 False 1358.000000 1358 94.4630 2161 3042 1 chr4D.!!$F1 881
12 TraesCS2A01G293900 chr5D 277251339 277252218 879 False 1356.000000 1356 94.4630 2161 3042 1 chr5D.!!$F1 881
13 TraesCS2A01G293900 chr3D 313292359 313293244 885 True 1356.000000 1356 94.3570 2161 3042 1 chr3D.!!$R1 881
14 TraesCS2A01G293900 chr5A 68817753 68818632 879 True 1349.000000 1349 94.3180 2161 3040 1 chr5A.!!$R1 879
15 TraesCS2A01G293900 chr5A 222606277 222607156 879 True 1345.000000 1345 94.2180 2161 3042 1 chr5A.!!$R2 881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.517316 AGCGCAAAGGAATGAACGAC 59.483 50.0 11.47 0.00 0.00 4.34 F
327 332 0.602562 TAATGGGCTTTGTGTGCTGC 59.397 50.0 0.00 0.00 0.00 5.25 F
369 374 0.671251 CGGCCCAGTTGCAACTTTTA 59.329 50.0 29.23 0.00 37.08 1.52 F
482 488 0.690762 TTCCTCTTGTTTCCTCCCCG 59.309 55.0 0.00 0.00 0.00 5.73 F
1852 1868 0.040204 AACTATTTGGGGCTGCAGCT 59.960 50.0 35.82 19.09 41.70 4.24 F
3542 3905 0.031616 GAGAGGGATGGACTGAGGGT 60.032 60.0 0.00 0.00 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1057 0.296642 GTTATGCACGGCGAGTAACG 59.703 55.0 16.62 0.0 45.66 3.18 R
1157 1166 0.758123 AAACACAATGCCACAAGGGG 59.242 50.0 0.00 0.0 37.04 4.79 R
1843 1859 0.893447 AAAGGAATGAAGCTGCAGCC 59.107 50.0 34.39 20.8 43.38 4.85 R
2446 2506 0.179048 ATCCGGCTTTGATGCGATGA 60.179 50.0 0.00 0.0 0.00 2.92 R
3558 3921 0.107456 ACACTGACACTGGGAGCTTG 59.893 55.0 0.00 0.0 0.00 4.01 R
5383 6584 0.035317 TCGCACAGTTGGATGAAGCT 59.965 50.0 0.00 0.0 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.144969 CGGAAGTACAGAAGCGCAAA 58.855 50.000 11.47 0.00 0.00 3.68
58 59 0.517316 AGCGCAAAGGAATGAACGAC 59.483 50.000 11.47 0.00 0.00 4.34
75 76 2.287788 ACGACACGTTACTTGAATCGGT 60.288 45.455 6.76 0.00 36.35 4.69
160 161 3.387225 GAGTAAGGGGCTCCGTGGC 62.387 68.421 0.00 0.00 38.33 5.01
232 233 3.799755 GCCGTCCGTGTGCCATTC 61.800 66.667 0.00 0.00 0.00 2.67
276 277 2.750888 GCGTTCCAGCCGTTGATCC 61.751 63.158 0.00 0.00 0.00 3.36
318 323 5.628433 CGGTAAAGGAGTAGTAATGGGCTTT 60.628 44.000 0.00 0.00 0.00 3.51
319 324 5.589050 GGTAAAGGAGTAGTAATGGGCTTTG 59.411 44.000 0.00 0.00 0.00 2.77
320 325 4.929146 AAGGAGTAGTAATGGGCTTTGT 57.071 40.909 0.00 0.00 0.00 2.83
321 326 4.222124 AGGAGTAGTAATGGGCTTTGTG 57.778 45.455 0.00 0.00 0.00 3.33
322 327 3.587506 AGGAGTAGTAATGGGCTTTGTGT 59.412 43.478 0.00 0.00 0.00 3.72
323 328 3.689649 GGAGTAGTAATGGGCTTTGTGTG 59.310 47.826 0.00 0.00 0.00 3.82
324 329 3.081804 AGTAGTAATGGGCTTTGTGTGC 58.918 45.455 0.00 0.00 0.00 4.57
325 330 2.292828 AGTAATGGGCTTTGTGTGCT 57.707 45.000 0.00 0.00 0.00 4.40
326 331 1.888512 AGTAATGGGCTTTGTGTGCTG 59.111 47.619 0.00 0.00 0.00 4.41
327 332 0.602562 TAATGGGCTTTGTGTGCTGC 59.397 50.000 0.00 0.00 0.00 5.25
328 333 1.117142 AATGGGCTTTGTGTGCTGCT 61.117 50.000 0.00 0.00 0.00 4.24
338 343 1.080772 TGTGCTGCTTACCTCGTCG 60.081 57.895 0.00 0.00 0.00 5.12
360 365 4.260620 CGACTAAAATATTCGGCCCAGTTG 60.261 45.833 0.00 0.00 0.00 3.16
369 374 0.671251 CGGCCCAGTTGCAACTTTTA 59.329 50.000 29.23 0.00 37.08 1.52
371 376 2.490115 CGGCCCAGTTGCAACTTTTATA 59.510 45.455 29.23 0.00 37.08 0.98
372 377 3.427503 CGGCCCAGTTGCAACTTTTATAG 60.428 47.826 29.23 16.35 37.08 1.31
413 418 1.003718 GCCCAGCAACCGTTACTCT 60.004 57.895 0.00 0.00 0.00 3.24
423 428 4.584394 CAACCGTTACTCTGTGTTTCAAC 58.416 43.478 0.00 0.00 0.00 3.18
474 480 1.231963 ACCCCCTGTTCCTCTTGTTT 58.768 50.000 0.00 0.00 0.00 2.83
482 488 0.690762 TTCCTCTTGTTTCCTCCCCG 59.309 55.000 0.00 0.00 0.00 5.73
775 783 0.764369 TGAGTCAGGGTGCTTGAGGT 60.764 55.000 0.00 0.00 0.00 3.85
840 848 3.066900 ACCGTCTCTGATCTATTTCACCG 59.933 47.826 0.00 0.00 0.00 4.94
1036 1045 1.077212 CTGCCTCTCCCACCCATTG 60.077 63.158 0.00 0.00 0.00 2.82
1037 1046 1.541118 TGCCTCTCCCACCCATTGA 60.541 57.895 0.00 0.00 0.00 2.57
1048 1057 7.004086 TCTCCCACCCATTGATTTATGTTATC 58.996 38.462 0.00 0.00 0.00 1.75
1146 1155 6.235231 TGTTTAGTAGACCTGGGATGATTC 57.765 41.667 0.00 0.00 0.00 2.52
1157 1166 1.966354 GGGATGATTCCTTGATTGGCC 59.034 52.381 0.00 0.00 42.20 5.36
1205 1214 3.445008 AGGTGAGCCTAGTTGATCTTGA 58.555 45.455 0.00 0.00 44.90 3.02
1235 1244 1.544537 CCACAAATCCAGGGACGTTGA 60.545 52.381 16.46 0.00 0.00 3.18
1241 1250 2.754946 TCCAGGGACGTTGATGTTAC 57.245 50.000 0.00 0.00 0.00 2.50
1258 1267 4.755411 TGTTACAGCTGCATCCTAGTAAC 58.245 43.478 15.27 12.48 40.79 2.50
1499 1514 4.782156 TGGGGAATGCCTATTTTTGTCAAT 59.218 37.500 0.00 0.00 0.00 2.57
1530 1545 4.561105 GACAAGAAACGATGGAAGAGACT 58.439 43.478 0.00 0.00 0.00 3.24
1620 1635 2.147150 GTCCTTGAAGGTGTTGAGCTC 58.853 52.381 11.60 6.82 36.53 4.09
1845 1861 9.961265 GTCAGTTATATTAAAACTATTTGGGGC 57.039 33.333 0.00 0.00 35.44 5.80
1846 1862 9.930158 TCAGTTATATTAAAACTATTTGGGGCT 57.070 29.630 0.00 0.00 35.44 5.19
1847 1863 9.965824 CAGTTATATTAAAACTATTTGGGGCTG 57.034 33.333 0.00 0.00 35.44 4.85
1848 1864 8.638873 AGTTATATTAAAACTATTTGGGGCTGC 58.361 33.333 0.00 0.00 35.44 5.25
1851 1867 0.897621 AAACTATTTGGGGCTGCAGC 59.102 50.000 30.88 30.88 41.14 5.25
1852 1868 0.040204 AACTATTTGGGGCTGCAGCT 59.960 50.000 35.82 19.09 41.70 4.24
1856 1872 0.616679 ATTTGGGGCTGCAGCTTCAT 60.617 50.000 35.82 18.62 41.70 2.57
1858 1874 1.252904 TTGGGGCTGCAGCTTCATTC 61.253 55.000 35.82 19.19 41.70 2.67
1859 1875 2.421399 GGGGCTGCAGCTTCATTCC 61.421 63.158 35.82 26.38 41.70 3.01
1861 1877 0.969409 GGGCTGCAGCTTCATTCCTT 60.969 55.000 35.82 0.00 41.70 3.36
1876 1929 7.425224 TTCATTCCTTTTCCTGTTTAACCAA 57.575 32.000 0.00 0.00 0.00 3.67
1877 1930 7.610580 TCATTCCTTTTCCTGTTTAACCAAT 57.389 32.000 0.00 0.00 0.00 3.16
1884 1937 3.300388 TCCTGTTTAACCAATTGTGCCA 58.700 40.909 4.43 0.00 0.00 4.92
1902 1955 7.945033 TGTGCCATTTTCTGACTTATTTTTC 57.055 32.000 0.00 0.00 0.00 2.29
1950 2003 8.438513 CGACTGCAGGATAGTGAATATAAATTG 58.561 37.037 19.93 0.00 0.00 2.32
2040 2093 2.633488 GAAAGGTAGCCTTAGTGCTGG 58.367 52.381 0.37 0.00 43.92 4.85
2047 2100 0.322008 GCCTTAGTGCTGGTGCTCTT 60.322 55.000 0.00 0.00 42.24 2.85
2052 2105 4.507710 CTTAGTGCTGGTGCTCTTTATCA 58.492 43.478 0.00 0.00 42.24 2.15
2088 2141 8.582437 TCCTATAGATGTGAAACGGGTTAATAG 58.418 37.037 0.00 0.00 42.39 1.73
2093 2146 7.844009 AGATGTGAAACGGGTTAATAGACTTA 58.156 34.615 0.00 0.00 42.39 2.24
2105 2158 9.444600 GGGTTAATAGACTTATGTTCAACTTCA 57.555 33.333 0.00 0.00 0.00 3.02
2122 2175 6.823689 TCAACTTCATAGATTAACCTCCAAGC 59.176 38.462 0.00 0.00 0.00 4.01
2123 2176 5.360591 ACTTCATAGATTAACCTCCAAGCG 58.639 41.667 0.00 0.00 0.00 4.68
2125 2178 4.945246 TCATAGATTAACCTCCAAGCGTC 58.055 43.478 0.00 0.00 0.00 5.19
2138 2191 5.371115 TCCAAGCGTCATTTTTCCTTTAG 57.629 39.130 0.00 0.00 0.00 1.85
2308 2362 5.718146 AGGCTTAGTAGAACTAAAACCGAC 58.282 41.667 10.55 0.00 39.89 4.79
2339 2393 2.756760 TGCGGTTTCAGTACTACTAGGG 59.243 50.000 0.00 0.00 0.00 3.53
2446 2506 6.903516 TGGAGGTATTGATGAAGATGTGAAT 58.096 36.000 0.00 0.00 0.00 2.57
2489 2549 0.877743 GAAGTGGCACCAAGCTTCTC 59.122 55.000 15.27 0.00 44.79 2.87
2531 2591 1.269517 TGCCACAAAAGCTAAAAGGCG 60.270 47.619 11.07 0.00 43.35 5.52
2547 2607 1.593296 GGCGAGTTCTACAGGACGGT 61.593 60.000 0.00 0.00 0.00 4.83
2615 2675 2.806244 AGGCGACATGTTCAACAGTTAC 59.194 45.455 0.00 0.00 0.00 2.50
2669 2729 0.482446 TGGCCACACAAGGAAGGATT 59.518 50.000 0.00 0.00 0.00 3.01
2723 2783 2.369394 GGGTAGCACCAATTGAAGAGG 58.631 52.381 7.12 0.00 41.02 3.69
2841 2901 1.204941 CAAGAGAGGTTGGGGTAGACG 59.795 57.143 0.00 0.00 0.00 4.18
2856 2916 2.128771 AGACGGAATTTGACATGGGG 57.871 50.000 0.00 0.00 0.00 4.96
2884 2944 4.641094 TCCGTAAAGAGAGATCTGAAGGAC 59.359 45.833 0.00 0.00 0.00 3.85
2886 2946 5.823570 CCGTAAAGAGAGATCTGAAGGACTA 59.176 44.000 0.00 0.00 0.00 2.59
2902 2962 6.153000 TGAAGGACTAGAGTATCACCAAAGAC 59.847 42.308 0.00 0.00 37.82 3.01
2921 2981 1.864251 ACCTAGCTATGGACAGGGGTA 59.136 52.381 14.03 0.00 32.12 3.69
3022 3082 3.889538 ACTTGTTTGGGACTAAAGGCTTC 59.110 43.478 0.00 0.00 0.00 3.86
3023 3083 3.586470 TGTTTGGGACTAAAGGCTTCA 57.414 42.857 0.00 0.00 0.00 3.02
3047 3107 7.441157 TCATTGTTGTTGTTGTTGTTGGTAAAA 59.559 29.630 0.00 0.00 0.00 1.52
3113 3476 8.600449 GCATCAGCAACTAGATTAAGACTTAT 57.400 34.615 0.00 0.00 41.58 1.73
3124 3487 1.471119 AAGACTTATGGGCGTCGAGA 58.529 50.000 0.00 0.00 35.38 4.04
3133 3496 0.529992 GGGCGTCGAGAAATGTAGGG 60.530 60.000 0.00 0.00 0.00 3.53
3172 3535 7.893124 ACCTCCTTCGTATCTCAACTATTTA 57.107 36.000 0.00 0.00 0.00 1.40
3250 3613 8.044060 TCTTGTTTTCTCATTTCATTATCGCT 57.956 30.769 0.00 0.00 0.00 4.93
3256 3619 8.731275 TTTCTCATTTCATTATCGCTAAAGGA 57.269 30.769 0.00 0.00 0.00 3.36
3260 3623 8.087982 TCATTTCATTATCGCTAAAGGATCAC 57.912 34.615 0.00 0.00 0.00 3.06
3277 3640 8.691661 AAGGATCACTTTGTACACTTTTACAT 57.308 30.769 0.00 0.00 35.35 2.29
3296 3659 5.102953 ACATACTGTTGCCATGATAGTGT 57.897 39.130 0.00 0.00 0.00 3.55
3311 3674 8.370940 CCATGATAGTGTCCATAAGTACTGAAT 58.629 37.037 0.00 0.00 0.00 2.57
3326 3689 7.849804 AGTACTGAATGGTGTAATAAGCTTG 57.150 36.000 9.86 0.00 0.00 4.01
3327 3690 5.567138 ACTGAATGGTGTAATAAGCTTGC 57.433 39.130 9.86 0.00 0.00 4.01
3328 3691 5.256474 ACTGAATGGTGTAATAAGCTTGCT 58.744 37.500 9.86 0.00 0.00 3.91
3329 3692 5.355350 ACTGAATGGTGTAATAAGCTTGCTC 59.645 40.000 9.86 0.00 0.00 4.26
3330 3693 4.640201 TGAATGGTGTAATAAGCTTGCTCC 59.360 41.667 9.86 7.60 0.00 4.70
3332 3695 4.235079 TGGTGTAATAAGCTTGCTCCAT 57.765 40.909 9.86 0.00 0.00 3.41
3334 3697 4.398988 TGGTGTAATAAGCTTGCTCCATTG 59.601 41.667 9.86 0.00 0.00 2.82
3335 3698 4.640201 GGTGTAATAAGCTTGCTCCATTGA 59.360 41.667 9.86 0.00 0.00 2.57
3336 3699 5.300286 GGTGTAATAAGCTTGCTCCATTGAT 59.700 40.000 9.86 0.00 0.00 2.57
3337 3700 6.183360 GGTGTAATAAGCTTGCTCCATTGATT 60.183 38.462 9.86 0.00 0.00 2.57
3338 3701 6.694411 GTGTAATAAGCTTGCTCCATTGATTG 59.306 38.462 9.86 0.00 0.00 2.67
3339 3702 5.927281 AATAAGCTTGCTCCATTGATTGT 57.073 34.783 9.86 0.00 0.00 2.71
3340 3703 3.587797 AAGCTTGCTCCATTGATTGTG 57.412 42.857 0.00 0.00 0.00 3.33
3341 3704 2.799017 AGCTTGCTCCATTGATTGTGA 58.201 42.857 0.00 0.00 0.00 3.58
3342 3705 2.490903 AGCTTGCTCCATTGATTGTGAC 59.509 45.455 0.00 0.00 0.00 3.67
3343 3706 2.229543 GCTTGCTCCATTGATTGTGACA 59.770 45.455 0.00 0.00 0.00 3.58
3344 3707 3.305539 GCTTGCTCCATTGATTGTGACAA 60.306 43.478 0.00 0.00 0.00 3.18
3345 3708 4.796946 GCTTGCTCCATTGATTGTGACAAA 60.797 41.667 0.62 0.00 0.00 2.83
3346 3709 4.241590 TGCTCCATTGATTGTGACAAAC 57.758 40.909 0.62 0.00 0.00 2.93
3347 3710 3.890756 TGCTCCATTGATTGTGACAAACT 59.109 39.130 0.62 0.00 0.00 2.66
3348 3711 5.069318 TGCTCCATTGATTGTGACAAACTA 58.931 37.500 0.62 0.00 0.00 2.24
3349 3712 5.181811 TGCTCCATTGATTGTGACAAACTAG 59.818 40.000 0.62 0.00 0.00 2.57
3350 3713 5.412594 GCTCCATTGATTGTGACAAACTAGA 59.587 40.000 0.62 0.00 0.00 2.43
3351 3714 6.072508 GCTCCATTGATTGTGACAAACTAGAA 60.073 38.462 0.62 0.00 0.00 2.10
3352 3715 7.522073 GCTCCATTGATTGTGACAAACTAGAAA 60.522 37.037 0.62 0.00 0.00 2.52
3353 3716 8.231692 TCCATTGATTGTGACAAACTAGAAAA 57.768 30.769 0.62 0.00 0.00 2.29
3354 3717 8.859090 TCCATTGATTGTGACAAACTAGAAAAT 58.141 29.630 0.62 0.00 0.00 1.82
3363 3726 9.146984 TGTGACAAACTAGAAAATACTTATCGG 57.853 33.333 0.00 0.00 0.00 4.18
3364 3727 9.362539 GTGACAAACTAGAAAATACTTATCGGA 57.637 33.333 0.00 0.00 0.00 4.55
3400 3763 3.562973 CCTCCATTGATTGTGATTCCTCG 59.437 47.826 0.00 0.00 0.00 4.63
3492 3855 5.573337 ATTTGTTATCTTCAAGCCTGAGC 57.427 39.130 0.00 0.00 40.32 4.26
3512 3875 2.699954 CTGTTGTACCTACTGCTTGGG 58.300 52.381 0.00 0.00 0.00 4.12
3542 3905 0.031616 GAGAGGGATGGACTGAGGGT 60.032 60.000 0.00 0.00 0.00 4.34
3558 3921 3.534721 GGTGTCAGACCCAGTTAGC 57.465 57.895 0.00 0.00 39.10 3.09
3559 3922 0.685097 GGTGTCAGACCCAGTTAGCA 59.315 55.000 0.00 0.00 39.10 3.49
3560 3923 1.071699 GGTGTCAGACCCAGTTAGCAA 59.928 52.381 0.00 0.00 39.10 3.91
3561 3924 2.417719 GTGTCAGACCCAGTTAGCAAG 58.582 52.381 0.00 0.00 0.00 4.01
3562 3925 1.270839 TGTCAGACCCAGTTAGCAAGC 60.271 52.381 0.00 0.00 0.00 4.01
3563 3926 1.002544 GTCAGACCCAGTTAGCAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
3564 3927 1.276421 TCAGACCCAGTTAGCAAGCTC 59.724 52.381 0.00 0.00 0.00 4.09
3565 3928 0.615850 AGACCCAGTTAGCAAGCTCC 59.384 55.000 0.00 0.00 0.00 4.70
3566 3929 0.393132 GACCCAGTTAGCAAGCTCCC 60.393 60.000 0.00 0.00 0.00 4.30
3567 3930 1.133809 ACCCAGTTAGCAAGCTCCCA 61.134 55.000 0.00 0.00 0.00 4.37
3568 3931 0.393537 CCCAGTTAGCAAGCTCCCAG 60.394 60.000 0.00 0.00 0.00 4.45
3569 3932 0.326264 CCAGTTAGCAAGCTCCCAGT 59.674 55.000 0.00 0.00 0.00 4.00
3570 3933 1.446907 CAGTTAGCAAGCTCCCAGTG 58.553 55.000 0.00 0.00 0.00 3.66
3571 3934 1.059913 AGTTAGCAAGCTCCCAGTGT 58.940 50.000 0.00 0.00 0.00 3.55
3572 3935 1.002544 AGTTAGCAAGCTCCCAGTGTC 59.997 52.381 0.00 0.00 0.00 3.67
3573 3936 1.055849 TTAGCAAGCTCCCAGTGTCA 58.944 50.000 0.00 0.00 0.00 3.58
3574 3937 0.610174 TAGCAAGCTCCCAGTGTCAG 59.390 55.000 0.00 0.00 0.00 3.51
3575 3938 1.072159 GCAAGCTCCCAGTGTCAGT 59.928 57.895 0.00 0.00 0.00 3.41
3576 3939 1.233285 GCAAGCTCCCAGTGTCAGTG 61.233 60.000 0.18 0.18 0.00 3.66
3577 3940 0.107456 CAAGCTCCCAGTGTCAGTGT 59.893 55.000 6.91 0.00 0.00 3.55
3578 3941 1.344438 CAAGCTCCCAGTGTCAGTGTA 59.656 52.381 6.91 0.00 0.00 2.90
3579 3942 0.969894 AGCTCCCAGTGTCAGTGTAC 59.030 55.000 6.91 0.00 0.00 2.90
3580 3943 0.388649 GCTCCCAGTGTCAGTGTACG 60.389 60.000 6.91 0.00 0.00 3.67
3581 3944 1.244816 CTCCCAGTGTCAGTGTACGA 58.755 55.000 6.91 0.00 0.00 3.43
3582 3945 1.611977 CTCCCAGTGTCAGTGTACGAA 59.388 52.381 6.91 0.00 0.00 3.85
3583 3946 1.338973 TCCCAGTGTCAGTGTACGAAC 59.661 52.381 6.91 0.00 0.00 3.95
3584 3947 1.340248 CCCAGTGTCAGTGTACGAACT 59.660 52.381 6.91 0.00 0.00 3.01
3594 3957 3.793559 AGTGTACGAACTGAAACAAGCT 58.206 40.909 0.00 0.00 0.00 3.74
3601 3964 2.262423 ACTGAAACAAGCTCCTGGTC 57.738 50.000 0.00 0.00 0.00 4.02
3616 3979 1.022451 TGGTCGCGCAGGGTTAATTC 61.022 55.000 8.75 0.00 42.82 2.17
3617 3980 0.743345 GGTCGCGCAGGGTTAATTCT 60.743 55.000 8.75 0.00 42.82 2.40
3619 3982 2.273557 GTCGCGCAGGGTTAATTCTTA 58.726 47.619 8.75 0.00 42.82 2.10
3621 3984 3.311596 GTCGCGCAGGGTTAATTCTTAAT 59.688 43.478 8.75 0.00 42.82 1.40
3622 3985 3.942748 TCGCGCAGGGTTAATTCTTAATT 59.057 39.130 8.75 0.00 42.82 1.40
3623 3986 4.396790 TCGCGCAGGGTTAATTCTTAATTT 59.603 37.500 8.75 0.00 42.82 1.82
3624 3987 4.733405 CGCGCAGGGTTAATTCTTAATTTC 59.267 41.667 8.75 0.00 34.98 2.17
3625 3988 5.448632 CGCGCAGGGTTAATTCTTAATTTCT 60.449 40.000 8.75 0.00 34.98 2.52
3626 3989 6.330278 GCGCAGGGTTAATTCTTAATTTCTT 58.670 36.000 0.30 0.00 32.38 2.52
3627 3990 7.477494 GCGCAGGGTTAATTCTTAATTTCTTA 58.523 34.615 0.30 0.00 32.38 2.10
3628 3991 7.644157 GCGCAGGGTTAATTCTTAATTTCTTAG 59.356 37.037 0.30 0.00 32.38 2.18
3629 3992 8.674607 CGCAGGGTTAATTCTTAATTTCTTAGT 58.325 33.333 0.00 0.00 32.38 2.24
3670 4033 5.329399 TGTAATTTAGGCCATGGTGTTCTT 58.671 37.500 14.67 3.46 0.00 2.52
3684 4048 6.097915 TGGTGTTCTTTTGACTACCTAGAG 57.902 41.667 0.00 0.00 36.31 2.43
3702 4066 2.038659 GAGGCTAGAGCTTGGTGAGAT 58.961 52.381 0.81 0.00 41.70 2.75
3714 4079 4.096984 GCTTGGTGAGATCAAAGGGTTATG 59.903 45.833 0.00 0.00 0.00 1.90
3722 4087 8.743714 GTGAGATCAAAGGGTTATGATTTTCTT 58.256 33.333 0.00 0.00 36.45 2.52
3723 4088 8.742777 TGAGATCAAAGGGTTATGATTTTCTTG 58.257 33.333 0.00 0.00 36.45 3.02
3761 4127 8.773645 CAAAAGACTTTCATGTACACATCAGTA 58.226 33.333 0.00 0.00 33.61 2.74
3773 4139 8.541899 TGTACACATCAGTACTCCCATATTAA 57.458 34.615 0.00 0.00 43.65 1.40
3798 4164 8.879427 ATTAGTTATAGCATTTGGTATTCCCC 57.121 34.615 7.51 0.00 39.24 4.81
3799 4165 5.641155 AGTTATAGCATTTGGTATTCCCCC 58.359 41.667 7.51 0.00 39.24 5.40
3820 4186 3.710722 CCGGAAGCTGCCAGAGGT 61.711 66.667 12.53 0.00 0.00 3.85
3821 4187 2.359169 CCGGAAGCTGCCAGAGGTA 61.359 63.158 12.53 0.00 0.00 3.08
3822 4188 1.690219 CCGGAAGCTGCCAGAGGTAT 61.690 60.000 12.53 0.00 0.00 2.73
3823 4189 0.179000 CGGAAGCTGCCAGAGGTATT 59.821 55.000 12.53 0.00 0.00 1.89
3824 4190 1.412710 CGGAAGCTGCCAGAGGTATTA 59.587 52.381 12.53 0.00 0.00 0.98
3825 4191 2.037772 CGGAAGCTGCCAGAGGTATTAT 59.962 50.000 12.53 0.00 0.00 1.28
3826 4192 3.406764 GGAAGCTGCCAGAGGTATTATG 58.593 50.000 5.59 0.00 0.00 1.90
3827 4193 3.181450 GGAAGCTGCCAGAGGTATTATGT 60.181 47.826 5.59 0.00 0.00 2.29
3828 4194 3.482156 AGCTGCCAGAGGTATTATGTG 57.518 47.619 0.00 0.00 0.00 3.21
3829 4195 3.041211 AGCTGCCAGAGGTATTATGTGA 58.959 45.455 0.00 0.00 0.00 3.58
3830 4196 3.134458 GCTGCCAGAGGTATTATGTGAC 58.866 50.000 0.00 0.00 0.00 3.67
3831 4197 3.432186 GCTGCCAGAGGTATTATGTGACA 60.432 47.826 0.00 0.00 0.00 3.58
3832 4198 4.744867 GCTGCCAGAGGTATTATGTGACAT 60.745 45.833 2.65 2.65 0.00 3.06
3833 4199 5.371526 CTGCCAGAGGTATTATGTGACATT 58.628 41.667 2.29 0.00 0.00 2.71
3834 4200 6.493189 TGCCAGAGGTATTATGTGACATTA 57.507 37.500 2.29 0.00 0.00 1.90
3835 4201 6.524734 TGCCAGAGGTATTATGTGACATTAG 58.475 40.000 2.29 0.00 0.00 1.73
3836 4202 6.326323 TGCCAGAGGTATTATGTGACATTAGA 59.674 38.462 2.29 0.00 0.00 2.10
3837 4203 6.870965 GCCAGAGGTATTATGTGACATTAGAG 59.129 42.308 2.29 0.00 0.00 2.43
3838 4204 7.255977 GCCAGAGGTATTATGTGACATTAGAGA 60.256 40.741 2.29 0.00 0.00 3.10
3839 4205 8.642432 CCAGAGGTATTATGTGACATTAGAGAA 58.358 37.037 2.29 0.00 0.00 2.87
3849 4215 8.830201 ATGTGACATTAGAGAATTGAGATAGC 57.170 34.615 0.00 0.00 0.00 2.97
3850 4216 7.785033 TGTGACATTAGAGAATTGAGATAGCA 58.215 34.615 0.00 0.00 0.00 3.49
3851 4217 7.708322 TGTGACATTAGAGAATTGAGATAGCAC 59.292 37.037 0.00 0.00 0.00 4.40
3852 4218 7.708322 GTGACATTAGAGAATTGAGATAGCACA 59.292 37.037 0.00 0.00 0.00 4.57
3875 4241 0.605319 TTCTGCCGGCAGTAGTTTGG 60.605 55.000 45.86 26.16 43.96 3.28
3885 4252 2.188817 CAGTAGTTTGGTAGGCCTCCT 58.811 52.381 9.68 0.00 37.71 3.69
3894 4261 1.141858 GGTAGGCCTCCTCCATTTCTG 59.858 57.143 9.68 0.00 34.61 3.02
4001 4368 9.908152 GTACTAAATGGATTTACAGCTTTTTGT 57.092 29.630 0.00 0.00 35.09 2.83
4003 4370 9.830975 ACTAAATGGATTTACAGCTTTTTGTTT 57.169 25.926 0.00 0.00 32.56 2.83
4028 4395 3.642141 AGACCACTTTGTTGTTCCCAAT 58.358 40.909 0.00 0.00 32.11 3.16
4032 4399 7.182060 AGACCACTTTGTTGTTCCCAATATAT 58.818 34.615 0.00 0.00 32.11 0.86
4073 4458 6.985188 TCAGGCAGTTTACTCACATAATTC 57.015 37.500 0.00 0.00 0.00 2.17
4077 4462 8.299570 CAGGCAGTTTACTCACATAATTCTTTT 58.700 33.333 0.00 0.00 0.00 2.27
4079 4464 8.296713 GGCAGTTTACTCACATAATTCTTTTCA 58.703 33.333 0.00 0.00 0.00 2.69
4080 4465 9.846248 GCAGTTTACTCACATAATTCTTTTCAT 57.154 29.630 0.00 0.00 0.00 2.57
4115 4500 1.642762 AGGTTTGCCCCAATCTGATCT 59.357 47.619 0.00 0.00 34.57 2.75
4117 4502 2.833943 GGTTTGCCCCAATCTGATCTTT 59.166 45.455 0.00 0.00 0.00 2.52
4118 4503 4.023291 GGTTTGCCCCAATCTGATCTTTA 58.977 43.478 0.00 0.00 0.00 1.85
4119 4504 4.142160 GGTTTGCCCCAATCTGATCTTTAC 60.142 45.833 0.00 0.00 0.00 2.01
4273 4662 6.463995 AAAAGTGTGTTTGCTTTGATCCTA 57.536 33.333 0.00 0.00 35.40 2.94
4281 4670 2.446435 TGCTTTGATCCTAGGTTTGCC 58.554 47.619 9.08 0.00 0.00 4.52
4329 4718 0.820871 TGGTCAAGGTTTTGTGTGCC 59.179 50.000 0.00 0.00 35.73 5.01
4366 4755 7.117667 CCAACTTTGGCCAAAAATATGAAGTAC 59.882 37.037 29.93 0.00 42.21 2.73
4416 4805 5.760484 AAATATTGGCAACCATCCAAACT 57.240 34.783 0.00 0.00 45.63 2.66
4418 4807 6.469782 AATATTGGCAACCATCCAAACTAG 57.530 37.500 0.00 0.00 45.63 2.57
4419 4808 3.517296 TTGGCAACCATCCAAACTAGA 57.483 42.857 0.00 0.00 40.35 2.43
4420 4809 3.071874 TGGCAACCATCCAAACTAGAG 57.928 47.619 0.00 0.00 0.00 2.43
4421 4810 2.375174 TGGCAACCATCCAAACTAGAGT 59.625 45.455 0.00 0.00 0.00 3.24
4422 4811 3.585289 TGGCAACCATCCAAACTAGAGTA 59.415 43.478 0.00 0.00 0.00 2.59
4423 4812 4.227300 TGGCAACCATCCAAACTAGAGTAT 59.773 41.667 0.00 0.00 0.00 2.12
4424 4813 4.816925 GGCAACCATCCAAACTAGAGTATC 59.183 45.833 0.00 0.00 0.00 2.24
4426 4815 5.294552 GCAACCATCCAAACTAGAGTATCAC 59.705 44.000 0.00 0.00 37.82 3.06
4427 4816 5.615925 ACCATCCAAACTAGAGTATCACC 57.384 43.478 0.00 0.00 37.82 4.02
4432 4837 7.227512 CCATCCAAACTAGAGTATCACCAAATC 59.772 40.741 0.00 0.00 37.82 2.17
4458 4863 6.261603 GGTAAGGTACATGTTGGCTATAAACC 59.738 42.308 2.30 1.59 0.00 3.27
4459 4864 5.710409 AGGTACATGTTGGCTATAAACCT 57.290 39.130 2.30 4.32 0.00 3.50
4474 4879 9.227777 GGCTATAAACCTAACATACCCTTATTG 57.772 37.037 0.00 0.00 0.00 1.90
4536 4941 9.787435 TTTCTAGTTTTGCAGTTTAGGAGATAA 57.213 29.630 0.00 0.00 0.00 1.75
4539 4944 7.913674 AGTTTTGCAGTTTAGGAGATAAGAG 57.086 36.000 0.00 0.00 0.00 2.85
4540 4945 7.454225 AGTTTTGCAGTTTAGGAGATAAGAGT 58.546 34.615 0.00 0.00 0.00 3.24
4541 4946 8.594550 AGTTTTGCAGTTTAGGAGATAAGAGTA 58.405 33.333 0.00 0.00 0.00 2.59
4543 4948 9.959721 TTTTGCAGTTTAGGAGATAAGAGTATT 57.040 29.630 0.00 0.00 0.00 1.89
4544 4949 9.601217 TTTGCAGTTTAGGAGATAAGAGTATTC 57.399 33.333 0.00 0.00 0.00 1.75
4545 4950 8.306313 TGCAGTTTAGGAGATAAGAGTATTCA 57.694 34.615 0.00 0.00 0.00 2.57
4547 4952 9.418045 GCAGTTTAGGAGATAAGAGTATTCATC 57.582 37.037 0.00 0.00 0.00 2.92
4553 4958 8.887264 AGGAGATAAGAGTATTCATCGGTAAT 57.113 34.615 0.00 0.00 0.00 1.89
4586 4991 3.864583 TGTTTTCATGCTGCTGTCAAAAC 59.135 39.130 16.09 16.09 35.32 2.43
4636 5652 9.841295 TCCTTAAAAGTAAACTTGACAGTGTAT 57.159 29.630 0.00 0.00 36.12 2.29
4649 5665 7.173218 ACTTGACAGTGTATTAATTGGTCTGTG 59.827 37.037 14.98 7.73 35.32 3.66
4653 5669 6.650807 ACAGTGTATTAATTGGTCTGTGTCTG 59.349 38.462 0.00 0.00 34.18 3.51
4658 5674 7.717436 TGTATTAATTGGTCTGTGTCTGTTTCA 59.283 33.333 0.00 0.00 0.00 2.69
4661 5677 4.898829 TTGGTCTGTGTCTGTTTCATTG 57.101 40.909 0.00 0.00 0.00 2.82
4692 5708 1.281867 TGCTCAGTATTGTGAAGGGGG 59.718 52.381 0.00 0.00 0.00 5.40
4730 5746 9.143631 ACGTTAGTATCCAACAAACTAATACAC 57.856 33.333 0.00 0.00 37.85 2.90
4771 5787 5.752650 TCCATAGTCTATATCCGTAGTGGG 58.247 45.833 0.00 0.00 38.76 4.61
4774 5790 6.263392 CCATAGTCTATATCCGTAGTGGGATG 59.737 46.154 4.39 0.00 46.23 3.51
4775 5791 4.601084 AGTCTATATCCGTAGTGGGATGG 58.399 47.826 4.39 0.00 46.23 3.51
4776 5792 3.130693 GTCTATATCCGTAGTGGGATGGC 59.869 52.174 4.39 0.00 46.23 4.40
4777 5793 2.024176 ATATCCGTAGTGGGATGGCA 57.976 50.000 4.39 0.00 46.23 4.92
4787 5911 4.255510 AGTGGGATGGCAAATCATTAGT 57.744 40.909 0.00 0.00 0.00 2.24
4817 5941 5.237779 GGAAACTGTTTCGATGTTTAGTCCA 59.762 40.000 22.80 0.00 40.57 4.02
4943 6087 3.056328 GGTTGGAGGCGCTGAACC 61.056 66.667 7.64 10.75 0.00 3.62
5025 6169 7.715686 AGTTAAGAAGAGGTGGTTCTTTTAGTG 59.284 37.037 3.58 0.00 40.61 2.74
5099 6243 2.812836 ATGGCAATGTCATCCACTCA 57.187 45.000 0.00 0.00 31.94 3.41
5115 6259 3.384467 CCACTCATTTCTTGGTTTGGTGT 59.616 43.478 0.00 0.00 0.00 4.16
5122 6266 6.605594 TCATTTCTTGGTTTGGTGTTTCTACT 59.394 34.615 0.00 0.00 0.00 2.57
5138 6282 6.260050 TGTTTCTACTTCCAAAGCAACTACTG 59.740 38.462 0.00 0.00 0.00 2.74
5139 6283 5.546621 TCTACTTCCAAAGCAACTACTGT 57.453 39.130 0.00 0.00 0.00 3.55
5140 6284 5.297547 TCTACTTCCAAAGCAACTACTGTG 58.702 41.667 0.00 0.00 0.00 3.66
5205 6383 7.507616 ACCTTGAACTTACCATTTGAATTACCA 59.492 33.333 0.00 0.00 0.00 3.25
5206 6384 8.531146 CCTTGAACTTACCATTTGAATTACCAT 58.469 33.333 0.00 0.00 0.00 3.55
5214 6393 7.403312 ACCATTTGAATTACCATCGAAATGA 57.597 32.000 0.00 0.00 34.25 2.57
5228 6407 4.682787 TCGAAATGATGATACGCAACTCT 58.317 39.130 0.00 0.00 0.00 3.24
5235 6414 1.480954 TGATACGCAACTCTTCCCCTC 59.519 52.381 0.00 0.00 0.00 4.30
5236 6415 1.757699 GATACGCAACTCTTCCCCTCT 59.242 52.381 0.00 0.00 0.00 3.69
5237 6416 1.183549 TACGCAACTCTTCCCCTCTC 58.816 55.000 0.00 0.00 0.00 3.20
5238 6417 1.219393 CGCAACTCTTCCCCTCTCC 59.781 63.158 0.00 0.00 0.00 3.71
5239 6418 1.261238 CGCAACTCTTCCCCTCTCCT 61.261 60.000 0.00 0.00 0.00 3.69
5240 6419 0.251634 GCAACTCTTCCCCTCTCCTG 59.748 60.000 0.00 0.00 0.00 3.86
5241 6420 0.908198 CAACTCTTCCCCTCTCCTGG 59.092 60.000 0.00 0.00 0.00 4.45
5248 6427 2.588989 CCCTCTCCTGGCTCTTGC 59.411 66.667 0.00 0.00 38.76 4.01
5256 6435 1.709147 CCTGGCTCTTGCGCACATAC 61.709 60.000 11.12 0.00 40.82 2.39
5266 6445 0.457166 GCGCACATACACGGACAGTA 60.457 55.000 0.30 0.00 0.00 2.74
5278 6457 4.825085 ACACGGACAGTATGGATTGTTTTT 59.175 37.500 0.00 0.00 43.62 1.94
5285 6464 7.696453 GGACAGTATGGATTGTTTTTGTTATCG 59.304 37.037 0.00 0.00 43.62 2.92
5313 6514 0.527565 AATTGGCCGATGCACTCAAC 59.472 50.000 6.14 0.00 40.13 3.18
5314 6515 1.315257 ATTGGCCGATGCACTCAACC 61.315 55.000 4.07 0.00 40.13 3.77
5317 6518 3.499737 CCGATGCACTCAACCCGC 61.500 66.667 0.00 0.00 0.00 6.13
5364 6565 5.110814 TGTGTAGCATAGCAATAGGGTTT 57.889 39.130 0.00 0.00 0.00 3.27
5365 6566 6.241882 TGTGTAGCATAGCAATAGGGTTTA 57.758 37.500 0.00 0.00 0.00 2.01
5366 6567 6.654959 TGTGTAGCATAGCAATAGGGTTTAA 58.345 36.000 0.00 0.00 0.00 1.52
5367 6568 7.287061 TGTGTAGCATAGCAATAGGGTTTAAT 58.713 34.615 0.00 0.00 0.00 1.40
5368 6569 8.433599 TGTGTAGCATAGCAATAGGGTTTAATA 58.566 33.333 0.00 0.00 0.00 0.98
5369 6570 9.449719 GTGTAGCATAGCAATAGGGTTTAATAT 57.550 33.333 0.00 0.00 0.00 1.28
5372 6573 8.940397 AGCATAGCAATAGGGTTTAATATTGT 57.060 30.769 0.00 0.70 40.14 2.71
5373 6574 8.796475 AGCATAGCAATAGGGTTTAATATTGTG 58.204 33.333 0.00 2.05 40.14 3.33
5374 6575 8.028938 GCATAGCAATAGGGTTTAATATTGTGG 58.971 37.037 0.00 0.06 40.14 4.17
5375 6576 9.295825 CATAGCAATAGGGTTTAATATTGTGGA 57.704 33.333 0.00 0.00 40.14 4.02
5376 6577 9.875708 ATAGCAATAGGGTTTAATATTGTGGAA 57.124 29.630 0.00 0.00 40.14 3.53
5377 6578 8.782137 AGCAATAGGGTTTAATATTGTGGAAT 57.218 30.769 0.00 0.00 40.14 3.01
5378 6579 9.875708 AGCAATAGGGTTTAATATTGTGGAATA 57.124 29.630 0.00 0.00 40.14 1.75
5382 6583 9.821240 ATAGGGTTTAATATTGTGGAATATGCA 57.179 29.630 0.00 0.00 35.34 3.96
5383 6584 8.546083 AGGGTTTAATATTGTGGAATATGCAA 57.454 30.769 0.00 0.00 35.34 4.08
5384 6585 8.641541 AGGGTTTAATATTGTGGAATATGCAAG 58.358 33.333 0.00 0.00 35.34 4.01
5385 6586 7.384932 GGGTTTAATATTGTGGAATATGCAAGC 59.615 37.037 0.00 0.00 35.34 4.01
5386 6587 8.143835 GGTTTAATATTGTGGAATATGCAAGCT 58.856 33.333 0.00 0.00 35.34 3.74
5387 6588 9.533253 GTTTAATATTGTGGAATATGCAAGCTT 57.467 29.630 0.00 0.00 35.34 3.74
5388 6589 9.748708 TTTAATATTGTGGAATATGCAAGCTTC 57.251 29.630 0.00 0.00 35.34 3.86
5389 6590 6.964807 ATATTGTGGAATATGCAAGCTTCA 57.035 33.333 0.00 0.00 34.09 3.02
5390 6591 5.864418 ATTGTGGAATATGCAAGCTTCAT 57.136 34.783 13.51 13.51 0.00 2.57
5391 6592 4.906065 TGTGGAATATGCAAGCTTCATC 57.094 40.909 12.69 0.00 0.00 2.92
5392 6593 3.633525 TGTGGAATATGCAAGCTTCATCC 59.366 43.478 12.69 10.52 0.00 3.51
5393 6594 3.633525 GTGGAATATGCAAGCTTCATCCA 59.366 43.478 12.69 12.36 0.00 3.41
5394 6595 4.098349 GTGGAATATGCAAGCTTCATCCAA 59.902 41.667 15.35 3.40 0.00 3.53
5395 6596 4.098349 TGGAATATGCAAGCTTCATCCAAC 59.902 41.667 12.69 5.98 0.00 3.77
5396 6597 4.340381 GGAATATGCAAGCTTCATCCAACT 59.660 41.667 12.69 0.00 0.00 3.16
5397 6598 4.913335 ATATGCAAGCTTCATCCAACTG 57.087 40.909 12.69 0.00 0.00 3.16
5398 6599 1.985473 TGCAAGCTTCATCCAACTGT 58.015 45.000 0.00 0.00 0.00 3.55
5399 6600 1.610038 TGCAAGCTTCATCCAACTGTG 59.390 47.619 0.00 0.00 0.00 3.66
5400 6601 1.668047 GCAAGCTTCATCCAACTGTGC 60.668 52.381 0.00 0.00 0.00 4.57
5401 6602 0.877071 AAGCTTCATCCAACTGTGCG 59.123 50.000 0.00 0.00 0.00 5.34
5402 6603 0.035317 AGCTTCATCCAACTGTGCGA 59.965 50.000 0.00 0.00 0.00 5.10
5403 6604 1.089920 GCTTCATCCAACTGTGCGAT 58.910 50.000 0.00 0.00 0.00 4.58
5404 6605 1.470098 GCTTCATCCAACTGTGCGATT 59.530 47.619 0.00 0.00 0.00 3.34
5405 6606 2.677836 GCTTCATCCAACTGTGCGATTA 59.322 45.455 0.00 0.00 0.00 1.75
5406 6607 3.126858 GCTTCATCCAACTGTGCGATTAA 59.873 43.478 0.00 0.00 0.00 1.40
5407 6608 4.201950 GCTTCATCCAACTGTGCGATTAAT 60.202 41.667 0.00 0.00 0.00 1.40
5408 6609 5.007626 GCTTCATCCAACTGTGCGATTAATA 59.992 40.000 0.00 0.00 0.00 0.98
5409 6610 6.293626 GCTTCATCCAACTGTGCGATTAATAT 60.294 38.462 0.00 0.00 0.00 1.28
5410 6611 6.544038 TCATCCAACTGTGCGATTAATATG 57.456 37.500 0.00 0.00 0.00 1.78
5411 6612 5.469760 TCATCCAACTGTGCGATTAATATGG 59.530 40.000 0.00 0.00 0.00 2.74
5412 6613 4.776349 TCCAACTGTGCGATTAATATGGT 58.224 39.130 0.00 0.00 0.00 3.55
5424 6625 6.403418 GCGATTAATATGGTCTAGAGCGTAGT 60.403 42.308 24.00 23.51 34.29 2.73
5425 6626 7.181418 CGATTAATATGGTCTAGAGCGTAGTC 58.819 42.308 23.13 17.35 34.29 2.59
5513 6725 1.073284 TGTTCCTCTAAGGCGCCTTTT 59.927 47.619 43.93 26.18 37.47 2.27
5530 6742 4.706962 GCCTTTTCCCTGAAGATTGTATGT 59.293 41.667 0.00 0.00 0.00 2.29
5544 6756 6.143915 AGATTGTATGTACCCTACTCATGGT 58.856 40.000 0.00 0.00 38.69 3.55
5545 6757 5.864418 TTGTATGTACCCTACTCATGGTC 57.136 43.478 0.00 0.00 36.04 4.02
5546 6758 4.220724 TGTATGTACCCTACTCATGGTCC 58.779 47.826 0.00 0.00 36.04 4.46
5547 6759 3.708236 ATGTACCCTACTCATGGTCCT 57.292 47.619 0.00 0.00 36.04 3.85
5548 6760 3.028094 TGTACCCTACTCATGGTCCTC 57.972 52.381 0.00 0.00 36.04 3.71
5550 6762 2.950990 ACCCTACTCATGGTCCTCTT 57.049 50.000 0.00 0.00 0.00 2.85
5551 6763 2.753247 ACCCTACTCATGGTCCTCTTC 58.247 52.381 0.00 0.00 0.00 2.87
5553 6765 3.246167 ACCCTACTCATGGTCCTCTTCTT 60.246 47.826 0.00 0.00 0.00 2.52
5555 6767 4.026744 CCTACTCATGGTCCTCTTCTTGA 58.973 47.826 0.00 0.00 0.00 3.02
5556 6768 4.653341 CCTACTCATGGTCCTCTTCTTGAT 59.347 45.833 0.00 0.00 0.00 2.57
5557 6769 5.130145 CCTACTCATGGTCCTCTTCTTGATT 59.870 44.000 0.00 0.00 0.00 2.57
5561 6773 6.214412 ACTCATGGTCCTCTTCTTGATTACTT 59.786 38.462 0.00 0.00 0.00 2.24
5562 6774 6.644347 TCATGGTCCTCTTCTTGATTACTTC 58.356 40.000 0.00 0.00 0.00 3.01
5563 6775 5.422214 TGGTCCTCTTCTTGATTACTTCC 57.578 43.478 0.00 0.00 0.00 3.46
5564 6776 4.844085 TGGTCCTCTTCTTGATTACTTCCA 59.156 41.667 0.00 0.00 0.00 3.53
5566 6778 5.877564 GGTCCTCTTCTTGATTACTTCCAAG 59.122 44.000 0.00 0.00 40.68 3.61
5570 6782 6.091441 CCTCTTCTTGATTACTTCCAAGTTCG 59.909 42.308 0.00 0.00 40.32 3.95
5571 6783 5.408604 TCTTCTTGATTACTTCCAAGTTCGC 59.591 40.000 0.00 0.00 40.32 4.70
5575 6787 5.353394 TGATTACTTCCAAGTTCGCCTAT 57.647 39.130 0.00 0.00 40.37 2.57
5576 6788 6.474140 TGATTACTTCCAAGTTCGCCTATA 57.526 37.500 0.00 0.00 40.37 1.31
5577 6789 7.062749 TGATTACTTCCAAGTTCGCCTATAT 57.937 36.000 0.00 0.00 40.37 0.86
5578 6790 8.185506 TGATTACTTCCAAGTTCGCCTATATA 57.814 34.615 0.00 0.00 40.37 0.86
5579 6791 8.812972 TGATTACTTCCAAGTTCGCCTATATAT 58.187 33.333 0.00 0.00 40.37 0.86
5584 6796 8.258708 ACTTCCAAGTTCGCCTATATATAATCC 58.741 37.037 0.00 0.00 35.21 3.01
5585 6797 7.973048 TCCAAGTTCGCCTATATATAATCCT 57.027 36.000 0.00 0.00 0.00 3.24
5586 6798 7.782049 TCCAAGTTCGCCTATATATAATCCTG 58.218 38.462 0.00 0.00 0.00 3.86
5587 6799 6.480320 CCAAGTTCGCCTATATATAATCCTGC 59.520 42.308 0.00 0.00 0.00 4.85
5588 6800 6.791867 AGTTCGCCTATATATAATCCTGCA 57.208 37.500 0.00 0.00 0.00 4.41
5589 6801 6.574350 AGTTCGCCTATATATAATCCTGCAC 58.426 40.000 0.00 0.00 0.00 4.57
5590 6802 6.154534 AGTTCGCCTATATATAATCCTGCACA 59.845 38.462 0.00 0.00 0.00 4.57
5591 6803 6.731292 TCGCCTATATATAATCCTGCACAT 57.269 37.500 0.00 0.00 0.00 3.21
5592 6804 7.833285 TCGCCTATATATAATCCTGCACATA 57.167 36.000 0.00 0.00 0.00 2.29
5593 6805 8.422577 TCGCCTATATATAATCCTGCACATAT 57.577 34.615 0.00 0.00 0.00 1.78
5594 6806 9.528489 TCGCCTATATATAATCCTGCACATATA 57.472 33.333 0.00 0.00 0.00 0.86
5595 6807 9.794685 CGCCTATATATAATCCTGCACATATAG 57.205 37.037 0.00 0.00 32.46 1.31
5617 6829 5.720202 AGTACATAGTGCAATTTCTGTCGA 58.280 37.500 0.00 0.00 0.00 4.20
5621 6833 2.783135 AGTGCAATTTCTGTCGACCAT 58.217 42.857 14.12 0.00 0.00 3.55
5653 6865 8.839310 TCTGAATCTTGGTTTCTTTCTCTAAG 57.161 34.615 0.00 0.00 35.04 2.18
5654 6866 8.651389 TCTGAATCTTGGTTTCTTTCTCTAAGA 58.349 33.333 0.00 0.00 41.11 2.10
5680 6892 6.241207 TGAGAAGAAAATTTTGTCCTAGCG 57.759 37.500 8.47 0.00 0.00 4.26
5869 7085 1.644786 CTTGCCGGGACTAAAAGCCG 61.645 60.000 2.18 0.00 0.00 5.52
5913 7129 0.832135 TAGTCAGATCATCCCGGGCC 60.832 60.000 18.49 0.00 0.00 5.80
5923 7139 1.956477 CATCCCGGGCCATAAAAGAAG 59.044 52.381 18.49 0.00 0.00 2.85
5958 7174 2.013563 GCACCATCACACCATCACGAT 61.014 52.381 0.00 0.00 0.00 3.73
5959 7175 1.935873 CACCATCACACCATCACGATC 59.064 52.381 0.00 0.00 0.00 3.69
5960 7176 1.211743 CCATCACACCATCACGATCG 58.788 55.000 14.88 14.88 0.00 3.69
5961 7177 1.202405 CCATCACACCATCACGATCGA 60.202 52.381 24.34 0.00 0.00 3.59
5987 7203 1.070309 CGCAACAGCTTCACTCAACTC 60.070 52.381 0.00 0.00 0.00 3.01
5993 7210 0.510359 GCTTCACTCAACTCGCAGTG 59.490 55.000 0.00 0.00 41.32 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.089476 CGTCGATATGATCTTCTTACTGCAT 58.911 40.000 0.00 0.00 0.00 3.96
1 2 5.452777 CGTCGATATGATCTTCTTACTGCA 58.547 41.667 0.00 0.00 0.00 4.41
2 3 4.854291 CCGTCGATATGATCTTCTTACTGC 59.146 45.833 0.00 0.00 0.00 4.40
3 4 6.081049 GTCCGTCGATATGATCTTCTTACTG 58.919 44.000 0.00 0.00 0.00 2.74
4 5 5.107026 CGTCCGTCGATATGATCTTCTTACT 60.107 44.000 0.00 0.00 42.86 2.24
5 6 5.080731 CGTCCGTCGATATGATCTTCTTAC 58.919 45.833 0.00 0.00 42.86 2.34
6 7 4.153655 CCGTCCGTCGATATGATCTTCTTA 59.846 45.833 0.00 0.00 42.86 2.10
7 8 3.058155 CCGTCCGTCGATATGATCTTCTT 60.058 47.826 0.00 0.00 42.86 2.52
8 9 2.484651 CCGTCCGTCGATATGATCTTCT 59.515 50.000 0.00 0.00 42.86 2.85
9 10 2.483106 TCCGTCCGTCGATATGATCTTC 59.517 50.000 0.00 0.00 42.86 2.87
58 59 3.122948 CCTTCACCGATTCAAGTAACGTG 59.877 47.826 0.00 0.00 0.00 4.49
69 70 2.763448 CTCTCTCCTTCCTTCACCGATT 59.237 50.000 0.00 0.00 0.00 3.34
75 76 2.612285 TCAGCTCTCTCCTTCCTTCA 57.388 50.000 0.00 0.00 0.00 3.02
171 172 7.465960 TGGCCTTGGTCTATATAAATATGCAA 58.534 34.615 3.32 0.00 0.00 4.08
173 174 6.543831 CCTGGCCTTGGTCTATATAAATATGC 59.456 42.308 3.32 0.00 0.00 3.14
318 323 0.319555 GACGAGGTAAGCAGCACACA 60.320 55.000 0.00 0.00 0.00 3.72
319 324 1.344942 CGACGAGGTAAGCAGCACAC 61.345 60.000 0.00 0.00 0.00 3.82
320 325 1.080772 CGACGAGGTAAGCAGCACA 60.081 57.895 0.00 0.00 0.00 4.57
321 326 1.071567 GTCGACGAGGTAAGCAGCAC 61.072 60.000 0.00 0.00 0.00 4.40
322 327 1.211969 GTCGACGAGGTAAGCAGCA 59.788 57.895 0.00 0.00 0.00 4.41
323 328 0.731417 TAGTCGACGAGGTAAGCAGC 59.269 55.000 10.46 0.00 0.00 5.25
324 329 3.482722 TTTAGTCGACGAGGTAAGCAG 57.517 47.619 10.46 0.00 0.00 4.24
325 330 3.921119 TTTTAGTCGACGAGGTAAGCA 57.079 42.857 10.46 0.00 0.00 3.91
326 331 7.091555 GAATATTTTAGTCGACGAGGTAAGC 57.908 40.000 10.46 0.00 0.00 3.09
338 343 4.497507 GCAACTGGGCCGAATATTTTAGTC 60.498 45.833 0.00 0.00 0.00 2.59
360 365 6.914259 ACTCAAAAGCCTCTATAAAAGTTGC 58.086 36.000 0.00 0.00 0.00 4.17
369 374 6.038997 AGTAAACGACTCAAAAGCCTCTAT 57.961 37.500 0.00 0.00 29.95 1.98
371 376 4.338379 AGTAAACGACTCAAAAGCCTCT 57.662 40.909 0.00 0.00 29.95 3.69
372 377 4.626172 CCTAGTAAACGACTCAAAAGCCTC 59.374 45.833 0.00 0.00 39.81 4.70
413 418 1.673920 GGGCTTTCTCGTTGAAACACA 59.326 47.619 3.10 0.00 39.50 3.72
423 428 0.600255 AACACTCGTGGGCTTTCTCG 60.600 55.000 1.77 0.00 34.19 4.04
1036 1045 5.400485 ACGGCGAGTAACGATAACATAAATC 59.600 40.000 16.62 0.00 45.77 2.17
1037 1046 5.174398 CACGGCGAGTAACGATAACATAAAT 59.826 40.000 16.62 0.00 45.77 1.40
1048 1057 0.296642 GTTATGCACGGCGAGTAACG 59.703 55.000 16.62 0.00 45.66 3.18
1146 1155 1.079073 ACAAGGGGGCCAATCAAGG 59.921 57.895 4.39 0.00 0.00 3.61
1157 1166 0.758123 AAACACAATGCCACAAGGGG 59.242 50.000 0.00 0.00 37.04 4.79
1170 1179 3.585862 GCTCACCTCGAAGATAAACACA 58.414 45.455 0.00 0.00 33.89 3.72
1171 1180 2.930682 GGCTCACCTCGAAGATAAACAC 59.069 50.000 0.00 0.00 33.89 3.32
1172 1181 2.832129 AGGCTCACCTCGAAGATAAACA 59.168 45.455 0.00 0.00 46.34 2.83
1205 1214 3.245264 CCTGGATTTGTGGTTCCTACCTT 60.245 47.826 0.00 0.00 45.27 3.50
1235 1244 5.360591 GTTACTAGGATGCAGCTGTAACAT 58.639 41.667 25.39 10.18 39.34 2.71
1241 1250 1.202463 AGCGTTACTAGGATGCAGCTG 60.202 52.381 10.11 10.11 32.01 4.24
1258 1267 3.245284 TCTTCTTTTCTCGTTGTGAAGCG 59.755 43.478 0.00 0.00 33.21 4.68
1364 1378 5.945784 TGCATCCTTTTATTACTGACAGCTT 59.054 36.000 1.25 0.00 0.00 3.74
1365 1379 5.355350 GTGCATCCTTTTATTACTGACAGCT 59.645 40.000 1.25 0.00 0.00 4.24
1366 1380 5.355350 AGTGCATCCTTTTATTACTGACAGC 59.645 40.000 1.25 0.00 0.00 4.40
1367 1381 6.992063 AGTGCATCCTTTTATTACTGACAG 57.008 37.500 0.00 0.00 0.00 3.51
1370 1384 5.163764 CGCAAGTGCATCCTTTTATTACTGA 60.164 40.000 3.87 0.00 42.21 3.41
1371 1385 5.030295 CGCAAGTGCATCCTTTTATTACTG 58.970 41.667 3.87 0.00 42.21 2.74
1440 1454 1.518903 AAAAAGGCAGGAGCACGAGC 61.519 55.000 0.00 0.00 44.61 5.03
1499 1514 4.340263 CATCGTTTCTTGTCGATCGACTA 58.660 43.478 39.10 32.88 43.43 2.59
1530 1545 6.612306 CATAAGATCATCACCGACGAGAATA 58.388 40.000 0.00 0.00 0.00 1.75
1620 1635 6.172136 AGATTCTTCAGGATACCATCACAG 57.828 41.667 0.00 0.00 37.17 3.66
1717 1733 7.833682 TGGACAGCAGAAATAGGATTCATTTTA 59.166 33.333 0.00 0.00 0.00 1.52
1791 1807 4.503910 TCTCAGCGCATTGTTTGTATAGT 58.496 39.130 11.47 0.00 0.00 2.12
1806 1822 1.884235 AACTGACCCTTTTCTCAGCG 58.116 50.000 0.00 0.00 37.96 5.18
1840 1856 1.679977 GAATGAAGCTGCAGCCCCA 60.680 57.895 34.39 29.72 43.38 4.96
1841 1857 2.421399 GGAATGAAGCTGCAGCCCC 61.421 63.158 34.39 25.31 43.38 5.80
1842 1858 0.969409 AAGGAATGAAGCTGCAGCCC 60.969 55.000 34.39 25.69 43.38 5.19
1843 1859 0.893447 AAAGGAATGAAGCTGCAGCC 59.107 50.000 34.39 20.80 43.38 4.85
1844 1860 2.603953 GAAAAGGAATGAAGCTGCAGC 58.396 47.619 31.53 31.53 42.49 5.25
1845 1861 2.824341 AGGAAAAGGAATGAAGCTGCAG 59.176 45.455 10.11 10.11 0.00 4.41
1846 1862 2.559668 CAGGAAAAGGAATGAAGCTGCA 59.440 45.455 0.00 0.00 0.00 4.41
1847 1863 2.560105 ACAGGAAAAGGAATGAAGCTGC 59.440 45.455 0.00 0.00 0.00 5.25
1848 1864 4.861102 AACAGGAAAAGGAATGAAGCTG 57.139 40.909 0.00 0.00 0.00 4.24
1851 1867 7.049799 TGGTTAAACAGGAAAAGGAATGAAG 57.950 36.000 0.00 0.00 0.00 3.02
1852 1868 7.425224 TTGGTTAAACAGGAAAAGGAATGAA 57.575 32.000 0.00 0.00 0.00 2.57
1856 1872 7.044798 CACAATTGGTTAAACAGGAAAAGGAA 58.955 34.615 10.83 0.00 0.00 3.36
1858 1874 5.236263 GCACAATTGGTTAAACAGGAAAAGG 59.764 40.000 10.83 0.00 0.00 3.11
1859 1875 5.236263 GGCACAATTGGTTAAACAGGAAAAG 59.764 40.000 10.83 0.00 0.00 2.27
1861 1877 4.162320 TGGCACAATTGGTTAAACAGGAAA 59.838 37.500 10.83 0.00 31.92 3.13
1902 1955 5.063880 CGTTCCCTTATTTCCTTATCCTGG 58.936 45.833 0.00 0.00 0.00 4.45
1950 2003 1.153147 GAGGGGCATCGAGAAACCC 60.153 63.158 8.71 8.71 42.01 4.11
2093 2146 8.328758 TGGAGGTTAATCTATGAAGTTGAACAT 58.671 33.333 0.00 0.00 0.00 2.71
2105 2158 5.552870 ATGACGCTTGGAGGTTAATCTAT 57.447 39.130 0.00 0.00 0.00 1.98
2112 2165 2.296190 GGAAAAATGACGCTTGGAGGTT 59.704 45.455 0.00 0.00 0.00 3.50
2117 2170 5.371115 TCTAAAGGAAAAATGACGCTTGG 57.629 39.130 0.00 0.00 0.00 3.61
2147 2200 8.375493 TCTCCTTGTATATTTTACCACAGTCT 57.625 34.615 0.00 0.00 0.00 3.24
2153 2206 9.400208 TGGGATATCTCCTTGTATATTTTACCA 57.600 33.333 0.00 0.00 41.74 3.25
2157 2210 8.904963 ACCATGGGATATCTCCTTGTATATTTT 58.095 33.333 18.09 0.00 41.74 1.82
2158 2211 8.331740 CACCATGGGATATCTCCTTGTATATTT 58.668 37.037 18.09 0.00 41.74 1.40
2159 2212 7.462328 ACACCATGGGATATCTCCTTGTATATT 59.538 37.037 18.09 0.00 41.74 1.28
2308 2362 2.002586 CTGAAACCGCACCTCATGTAG 58.997 52.381 0.00 0.00 0.00 2.74
2339 2393 2.798364 GGCTAACCTCCTCCTCGCC 61.798 68.421 0.00 0.00 0.00 5.54
2359 2419 2.044946 GGCACCACCTGTCCATCC 60.045 66.667 0.00 0.00 34.51 3.51
2446 2506 0.179048 ATCCGGCTTTGATGCGATGA 60.179 50.000 0.00 0.00 0.00 2.92
2489 2549 2.951726 TCTCTTGTCACAGAGAATGCG 58.048 47.619 10.49 0.00 45.28 4.73
2531 2591 1.254954 ACCACCGTCCTGTAGAACTC 58.745 55.000 0.00 0.00 0.00 3.01
2547 2607 1.228003 AACATTGCGGGTCGAACCA 60.228 52.632 21.79 0.00 41.02 3.67
2659 2719 1.952621 TCCGGACTCAATCCTTCCTT 58.047 50.000 0.00 0.00 46.69 3.36
2669 2729 5.007682 TCGTATATCATCATTCCGGACTCA 58.992 41.667 1.83 0.00 0.00 3.41
2723 2783 1.728971 CAGACGATGTTGGACAAGCTC 59.271 52.381 0.00 0.00 0.00 4.09
2841 2901 0.740737 CTCGCCCCATGTCAAATTCC 59.259 55.000 0.00 0.00 0.00 3.01
2856 2916 2.614983 AGATCTCTCTTTACGGACTCGC 59.385 50.000 0.00 0.00 40.63 5.03
2884 2944 5.830991 AGCTAGGTCTTTGGTGATACTCTAG 59.169 44.000 0.00 0.00 0.00 2.43
2886 2946 4.615513 AGCTAGGTCTTTGGTGATACTCT 58.384 43.478 0.00 0.00 0.00 3.24
2902 2962 2.249139 GTACCCCTGTCCATAGCTAGG 58.751 57.143 0.00 0.00 0.00 3.02
2921 2981 2.472695 TGGATAGCAAGCTTTCACGT 57.527 45.000 13.19 0.00 0.00 4.49
3022 3082 6.712241 TTACCAACAACAACAACAACAATG 57.288 33.333 0.00 0.00 0.00 2.82
3023 3083 7.730364 TTTTACCAACAACAACAACAACAAT 57.270 28.000 0.00 0.00 0.00 2.71
3047 3107 7.000472 CCTGAGGGAATTTGATGTATGTACAT 59.000 38.462 13.93 13.93 41.37 2.29
3102 3169 3.635373 TCTCGACGCCCATAAGTCTTAAT 59.365 43.478 0.00 0.00 35.38 1.40
3113 3476 0.174845 CCTACATTTCTCGACGCCCA 59.825 55.000 0.00 0.00 0.00 5.36
3124 3487 7.780271 GGTTGGATAAGAAATCTCCCTACATTT 59.220 37.037 0.00 0.00 0.00 2.32
3133 3496 5.755861 CGAAGGAGGTTGGATAAGAAATCTC 59.244 44.000 0.00 0.00 33.56 2.75
3142 3505 4.800023 TGAGATACGAAGGAGGTTGGATA 58.200 43.478 0.00 0.00 0.00 2.59
3198 3561 4.913335 ATATGAAGGCTGAATGCTTGTG 57.087 40.909 0.00 0.00 42.39 3.33
3207 3570 9.466497 AAAACAAGATCTAAATATGAAGGCTGA 57.534 29.630 0.00 0.00 0.00 4.26
3223 3586 8.951969 GCGATAATGAAATGAGAAAACAAGATC 58.048 33.333 0.00 0.00 0.00 2.75
3250 3613 9.616156 TGTAAAAGTGTACAAAGTGATCCTTTA 57.384 29.630 0.00 0.00 41.51 1.85
3281 3644 5.126067 ACTTATGGACACTATCATGGCAAC 58.874 41.667 0.00 0.00 0.00 4.17
3311 3674 3.712016 TGGAGCAAGCTTATTACACCA 57.288 42.857 0.00 0.83 0.00 4.17
3322 3685 2.229543 TGTCACAATCAATGGAGCAAGC 59.770 45.455 0.00 0.00 0.00 4.01
3325 3688 3.890756 AGTTTGTCACAATCAATGGAGCA 59.109 39.130 1.48 0.00 0.00 4.26
3326 3689 4.510038 AGTTTGTCACAATCAATGGAGC 57.490 40.909 1.48 0.00 0.00 4.70
3327 3690 7.439157 TTCTAGTTTGTCACAATCAATGGAG 57.561 36.000 1.48 0.00 0.00 3.86
3328 3691 7.815840 TTTCTAGTTTGTCACAATCAATGGA 57.184 32.000 1.48 0.00 0.00 3.41
3337 3700 9.146984 CCGATAAGTATTTTCTAGTTTGTCACA 57.853 33.333 0.00 0.00 0.00 3.58
3338 3701 9.362539 TCCGATAAGTATTTTCTAGTTTGTCAC 57.637 33.333 0.00 0.00 0.00 3.67
3348 3711 9.262358 GCTTAGACAATCCGATAAGTATTTTCT 57.738 33.333 0.00 0.00 0.00 2.52
3349 3712 9.262358 AGCTTAGACAATCCGATAAGTATTTTC 57.738 33.333 0.00 0.00 0.00 2.29
3350 3713 9.614792 AAGCTTAGACAATCCGATAAGTATTTT 57.385 29.630 0.00 0.00 0.00 1.82
3351 3714 9.046296 CAAGCTTAGACAATCCGATAAGTATTT 57.954 33.333 0.00 0.00 0.00 1.40
3352 3715 7.171678 GCAAGCTTAGACAATCCGATAAGTATT 59.828 37.037 0.00 0.00 0.00 1.89
3353 3716 6.647067 GCAAGCTTAGACAATCCGATAAGTAT 59.353 38.462 0.00 0.00 0.00 2.12
3354 3717 5.983720 GCAAGCTTAGACAATCCGATAAGTA 59.016 40.000 0.00 0.00 0.00 2.24
3355 3718 4.811557 GCAAGCTTAGACAATCCGATAAGT 59.188 41.667 0.00 0.00 0.00 2.24
3356 3719 4.212214 GGCAAGCTTAGACAATCCGATAAG 59.788 45.833 0.00 0.00 0.00 1.73
3357 3720 4.127171 GGCAAGCTTAGACAATCCGATAA 58.873 43.478 0.00 0.00 0.00 1.75
3358 3721 3.388024 AGGCAAGCTTAGACAATCCGATA 59.612 43.478 0.00 0.00 0.00 2.92
3359 3722 2.171448 AGGCAAGCTTAGACAATCCGAT 59.829 45.455 0.00 0.00 0.00 4.18
3360 3723 1.555075 AGGCAAGCTTAGACAATCCGA 59.445 47.619 0.00 0.00 0.00 4.55
3361 3724 1.936547 GAGGCAAGCTTAGACAATCCG 59.063 52.381 0.00 0.00 0.00 4.18
3362 3725 2.293170 GGAGGCAAGCTTAGACAATCC 58.707 52.381 0.00 0.30 0.00 3.01
3363 3726 2.991250 TGGAGGCAAGCTTAGACAATC 58.009 47.619 0.00 0.00 0.00 2.67
3364 3727 3.659183 ATGGAGGCAAGCTTAGACAAT 57.341 42.857 0.00 0.00 0.00 2.71
3400 3763 9.917129 TTTTAAACTAAAATAACCTTAGCTGCC 57.083 29.630 0.00 0.00 33.08 4.85
3429 3792 3.631686 CACCAAATGACTTCCAACAGACA 59.368 43.478 0.00 0.00 0.00 3.41
3430 3793 3.632145 ACACCAAATGACTTCCAACAGAC 59.368 43.478 0.00 0.00 0.00 3.51
3437 3800 5.508200 TGTGTTAACACCAAATGACTTCC 57.492 39.130 30.68 6.66 45.88 3.46
3490 3853 2.289694 CCAAGCAGTAGGTACAACAGCT 60.290 50.000 10.47 10.47 38.84 4.24
3492 3855 2.699954 CCCAAGCAGTAGGTACAACAG 58.300 52.381 0.00 0.00 0.00 3.16
3512 3875 2.419851 CCATCCCTCTCTCTCAACAAGC 60.420 54.545 0.00 0.00 0.00 4.01
3542 3905 1.270839 GCTTGCTAACTGGGTCTGACA 60.271 52.381 10.38 0.00 0.00 3.58
3550 3913 0.326264 ACTGGGAGCTTGCTAACTGG 59.674 55.000 0.00 0.00 0.00 4.00
3552 3915 1.002544 GACACTGGGAGCTTGCTAACT 59.997 52.381 0.00 0.00 0.00 2.24
3555 3918 0.610174 CTGACACTGGGAGCTTGCTA 59.390 55.000 0.00 0.00 0.00 3.49
3556 3919 1.374190 CTGACACTGGGAGCTTGCT 59.626 57.895 0.00 0.00 0.00 3.91
3557 3920 1.072159 ACTGACACTGGGAGCTTGC 59.928 57.895 0.00 0.00 0.00 4.01
3558 3921 0.107456 ACACTGACACTGGGAGCTTG 59.893 55.000 0.00 0.00 0.00 4.01
3559 3922 1.344763 GTACACTGACACTGGGAGCTT 59.655 52.381 0.00 0.00 0.00 3.74
3560 3923 0.969894 GTACACTGACACTGGGAGCT 59.030 55.000 0.00 0.00 0.00 4.09
3561 3924 0.388649 CGTACACTGACACTGGGAGC 60.389 60.000 0.00 0.00 0.00 4.70
3562 3925 1.244816 TCGTACACTGACACTGGGAG 58.755 55.000 0.00 0.00 0.00 4.30
3563 3926 1.338973 GTTCGTACACTGACACTGGGA 59.661 52.381 0.00 0.00 0.00 4.37
3564 3927 1.340248 AGTTCGTACACTGACACTGGG 59.660 52.381 0.00 0.00 0.00 4.45
3565 3928 2.034179 TCAGTTCGTACACTGACACTGG 59.966 50.000 11.04 0.00 46.76 4.00
3566 3929 3.349488 TCAGTTCGTACACTGACACTG 57.651 47.619 11.04 7.96 46.76 3.66
3572 3935 3.555956 AGCTTGTTTCAGTTCGTACACTG 59.444 43.478 6.95 6.95 44.96 3.66
3573 3936 3.793559 AGCTTGTTTCAGTTCGTACACT 58.206 40.909 0.00 0.00 0.00 3.55
3574 3937 3.059800 GGAGCTTGTTTCAGTTCGTACAC 60.060 47.826 0.00 0.00 0.00 2.90
3575 3938 3.128349 GGAGCTTGTTTCAGTTCGTACA 58.872 45.455 0.00 0.00 0.00 2.90
3576 3939 3.184581 CAGGAGCTTGTTTCAGTTCGTAC 59.815 47.826 0.00 0.00 0.00 3.67
3577 3940 3.390135 CAGGAGCTTGTTTCAGTTCGTA 58.610 45.455 0.00 0.00 0.00 3.43
3578 3941 2.213499 CAGGAGCTTGTTTCAGTTCGT 58.787 47.619 0.00 0.00 0.00 3.85
3579 3942 1.532868 CCAGGAGCTTGTTTCAGTTCG 59.467 52.381 0.00 0.00 0.00 3.95
3580 3943 2.550180 GACCAGGAGCTTGTTTCAGTTC 59.450 50.000 0.00 0.00 0.00 3.01
3581 3944 2.576615 GACCAGGAGCTTGTTTCAGTT 58.423 47.619 0.00 0.00 0.00 3.16
3582 3945 1.541233 CGACCAGGAGCTTGTTTCAGT 60.541 52.381 0.00 0.00 0.00 3.41
3583 3946 1.151668 CGACCAGGAGCTTGTTTCAG 58.848 55.000 0.00 0.00 0.00 3.02
3584 3947 0.884704 GCGACCAGGAGCTTGTTTCA 60.885 55.000 0.00 0.00 0.00 2.69
3585 3948 1.869690 GCGACCAGGAGCTTGTTTC 59.130 57.895 0.00 0.00 0.00 2.78
3586 3949 1.961277 CGCGACCAGGAGCTTGTTT 60.961 57.895 0.00 0.00 0.00 2.83
3587 3950 2.357517 CGCGACCAGGAGCTTGTT 60.358 61.111 0.00 0.00 0.00 2.83
3590 3953 4.749310 CTGCGCGACCAGGAGCTT 62.749 66.667 12.10 0.00 33.59 3.74
3601 3964 3.963383 ATTAAGAATTAACCCTGCGCG 57.037 42.857 0.00 0.00 44.35 6.86
3628 3991 4.970662 ACAATGTTAGGCACATGATGAC 57.029 40.909 0.00 0.00 46.23 3.06
3629 3992 7.643569 AATTACAATGTTAGGCACATGATGA 57.356 32.000 0.00 0.00 46.23 2.92
3630 3993 9.454585 CTAAATTACAATGTTAGGCACATGATG 57.545 33.333 0.00 0.00 46.23 3.07
3631 3994 8.632679 CCTAAATTACAATGTTAGGCACATGAT 58.367 33.333 0.00 0.00 46.23 2.45
3670 4033 4.079672 AGCTCTAGCCTCTAGGTAGTCAAA 60.080 45.833 0.00 0.00 45.18 2.69
3684 4048 1.759445 TGATCTCACCAAGCTCTAGCC 59.241 52.381 0.00 0.00 43.38 3.93
3702 4066 7.847711 TTCCAAGAAAATCATAACCCTTTGA 57.152 32.000 0.00 0.00 0.00 2.69
3714 4079 7.481275 TTTGCATGAACTTTCCAAGAAAATC 57.519 32.000 0.00 0.00 0.00 2.17
3722 4087 5.596836 AAGTCTTTTGCATGAACTTTCCA 57.403 34.783 0.00 0.00 0.00 3.53
3723 4088 6.042143 TGAAAGTCTTTTGCATGAACTTTCC 58.958 36.000 25.51 16.05 40.16 3.13
3773 4139 7.893833 GGGGGAATACCAAATGCTATAACTAAT 59.106 37.037 0.00 0.00 42.91 1.73
3803 4169 1.690219 ATACCTCTGGCAGCTTCCGG 61.690 60.000 10.34 4.61 0.00 5.14
3804 4170 0.179000 AATACCTCTGGCAGCTTCCG 59.821 55.000 10.34 0.00 0.00 4.30
3805 4171 3.181450 ACATAATACCTCTGGCAGCTTCC 60.181 47.826 10.34 0.00 0.00 3.46
3806 4172 3.812053 CACATAATACCTCTGGCAGCTTC 59.188 47.826 10.34 0.00 0.00 3.86
3807 4173 3.455910 TCACATAATACCTCTGGCAGCTT 59.544 43.478 10.34 0.00 0.00 3.74
3808 4174 3.041211 TCACATAATACCTCTGGCAGCT 58.959 45.455 10.34 0.00 0.00 4.24
3809 4175 3.134458 GTCACATAATACCTCTGGCAGC 58.866 50.000 10.34 0.00 0.00 5.25
3810 4176 4.406648 TGTCACATAATACCTCTGGCAG 57.593 45.455 8.58 8.58 0.00 4.85
3811 4177 5.372343 AATGTCACATAATACCTCTGGCA 57.628 39.130 0.00 0.00 0.00 4.92
3812 4178 6.759272 TCTAATGTCACATAATACCTCTGGC 58.241 40.000 0.00 0.00 0.00 4.85
3813 4179 8.183104 TCTCTAATGTCACATAATACCTCTGG 57.817 38.462 0.00 0.00 0.00 3.86
3823 4189 9.920133 GCTATCTCAATTCTCTAATGTCACATA 57.080 33.333 0.00 0.00 0.00 2.29
3824 4190 8.427276 TGCTATCTCAATTCTCTAATGTCACAT 58.573 33.333 0.00 0.00 0.00 3.21
3825 4191 7.708322 GTGCTATCTCAATTCTCTAATGTCACA 59.292 37.037 0.00 0.00 0.00 3.58
3826 4192 7.708322 TGTGCTATCTCAATTCTCTAATGTCAC 59.292 37.037 0.00 0.00 0.00 3.67
3827 4193 7.785033 TGTGCTATCTCAATTCTCTAATGTCA 58.215 34.615 0.00 0.00 0.00 3.58
3828 4194 8.710551 CATGTGCTATCTCAATTCTCTAATGTC 58.289 37.037 0.00 0.00 0.00 3.06
3829 4195 7.660617 CCATGTGCTATCTCAATTCTCTAATGT 59.339 37.037 0.00 0.00 0.00 2.71
3830 4196 7.660617 ACCATGTGCTATCTCAATTCTCTAATG 59.339 37.037 0.00 0.00 0.00 1.90
3831 4197 7.743749 ACCATGTGCTATCTCAATTCTCTAAT 58.256 34.615 0.00 0.00 0.00 1.73
3832 4198 7.129457 ACCATGTGCTATCTCAATTCTCTAA 57.871 36.000 0.00 0.00 0.00 2.10
3833 4199 6.737720 ACCATGTGCTATCTCAATTCTCTA 57.262 37.500 0.00 0.00 0.00 2.43
3834 4200 5.627182 ACCATGTGCTATCTCAATTCTCT 57.373 39.130 0.00 0.00 0.00 3.10
3835 4201 6.018098 CAGAACCATGTGCTATCTCAATTCTC 60.018 42.308 0.00 0.00 0.00 2.87
3836 4202 5.821470 CAGAACCATGTGCTATCTCAATTCT 59.179 40.000 0.00 0.00 0.00 2.40
3837 4203 5.505324 GCAGAACCATGTGCTATCTCAATTC 60.505 44.000 0.00 0.00 42.31 2.17
3838 4204 4.337555 GCAGAACCATGTGCTATCTCAATT 59.662 41.667 0.00 0.00 42.31 2.32
3839 4205 3.881688 GCAGAACCATGTGCTATCTCAAT 59.118 43.478 0.00 0.00 42.31 2.57
3840 4206 3.273434 GCAGAACCATGTGCTATCTCAA 58.727 45.455 0.00 0.00 42.31 3.02
3841 4207 2.420547 GGCAGAACCATGTGCTATCTCA 60.421 50.000 6.05 0.00 44.82 3.27
3842 4208 2.216898 GGCAGAACCATGTGCTATCTC 58.783 52.381 6.05 0.00 44.82 2.75
3843 4209 1.473965 CGGCAGAACCATGTGCTATCT 60.474 52.381 6.05 0.00 44.82 1.98
3844 4210 0.940126 CGGCAGAACCATGTGCTATC 59.060 55.000 6.05 0.00 44.82 2.08
3845 4211 0.464373 CCGGCAGAACCATGTGCTAT 60.464 55.000 6.05 0.00 44.82 2.97
3846 4212 1.078497 CCGGCAGAACCATGTGCTA 60.078 57.895 6.05 0.00 44.82 3.49
3847 4213 2.360350 CCGGCAGAACCATGTGCT 60.360 61.111 6.05 0.00 44.82 4.40
3848 4214 4.120331 GCCGGCAGAACCATGTGC 62.120 66.667 24.80 0.00 44.72 4.57
3849 4215 2.672651 TGCCGGCAGAACCATGTG 60.673 61.111 29.03 0.00 39.03 3.21
3850 4216 2.360350 CTGCCGGCAGAACCATGT 60.360 61.111 46.72 0.00 46.30 3.21
3875 4241 1.141858 CCAGAAATGGAGGAGGCCTAC 59.858 57.143 6.98 6.98 34.37 3.18
3894 4261 2.029838 CTCATAAGCAGTGGACCACC 57.970 55.000 21.32 6.89 34.49 4.61
3946 4313 1.556911 AGAATGGTCACGAGGCAATCT 59.443 47.619 0.00 0.00 0.00 2.40
3951 4318 1.363744 CTGAAGAATGGTCACGAGGC 58.636 55.000 0.00 0.00 0.00 4.70
4000 4367 5.347635 GGAACAACAAAGTGGTCTTTCAAAC 59.652 40.000 0.00 0.00 41.31 2.93
4001 4368 5.474825 GGAACAACAAAGTGGTCTTTCAAA 58.525 37.500 0.00 0.00 41.31 2.69
4002 4369 4.081917 GGGAACAACAAAGTGGTCTTTCAA 60.082 41.667 0.00 0.00 41.31 2.69
4003 4370 3.445805 GGGAACAACAAAGTGGTCTTTCA 59.554 43.478 0.00 0.00 41.31 2.69
4004 4371 3.445805 TGGGAACAACAAAGTGGTCTTTC 59.554 43.478 0.00 0.00 38.52 2.62
4032 4399 6.600388 TGCCTGATGCTTCCTTTTGTATATA 58.400 36.000 0.00 0.00 42.00 0.86
4035 4402 3.698040 CTGCCTGATGCTTCCTTTTGTAT 59.302 43.478 0.00 0.00 42.00 2.29
4051 4436 6.992063 AGAATTATGTGAGTAAACTGCCTG 57.008 37.500 0.00 0.00 0.00 4.85
4052 4437 8.409358 AAAAGAATTATGTGAGTAAACTGCCT 57.591 30.769 0.00 0.00 0.00 4.75
4079 4464 9.267071 GGGGCAAACCTTTCCATATATAATTAT 57.733 33.333 2.97 2.97 40.03 1.28
4080 4465 8.235230 TGGGGCAAACCTTTCCATATATAATTA 58.765 33.333 0.00 0.00 40.03 1.40
4082 4467 6.629156 TGGGGCAAACCTTTCCATATATAAT 58.371 36.000 0.00 0.00 40.03 1.28
4085 4470 4.551215 TGGGGCAAACCTTTCCATATAT 57.449 40.909 0.00 0.00 40.03 0.86
4086 4471 4.338795 TTGGGGCAAACCTTTCCATATA 57.661 40.909 0.00 0.00 40.03 0.86
4087 4472 2.938428 TGGGGCAAACCTTTCCATAT 57.062 45.000 0.00 0.00 40.03 1.78
4089 4474 1.908619 GATTGGGGCAAACCTTTCCAT 59.091 47.619 0.00 0.00 40.03 3.41
4090 4475 1.132881 AGATTGGGGCAAACCTTTCCA 60.133 47.619 0.00 0.00 40.03 3.53
4091 4476 1.276138 CAGATTGGGGCAAACCTTTCC 59.724 52.381 0.00 0.00 40.03 3.13
4092 4477 2.247358 TCAGATTGGGGCAAACCTTTC 58.753 47.619 0.00 0.00 40.03 2.62
4093 4478 2.397044 TCAGATTGGGGCAAACCTTT 57.603 45.000 0.00 0.00 40.03 3.11
4094 4479 2.043526 AGATCAGATTGGGGCAAACCTT 59.956 45.455 0.00 0.00 40.03 3.50
4097 4482 4.706962 AGTAAAGATCAGATTGGGGCAAAC 59.293 41.667 0.00 0.00 0.00 2.93
4115 4500 7.715249 AGAATCATGCGCCTAAAATAGAGTAAA 59.285 33.333 4.18 0.00 0.00 2.01
4117 4502 6.759272 AGAATCATGCGCCTAAAATAGAGTA 58.241 36.000 4.18 0.00 0.00 2.59
4118 4503 5.615289 AGAATCATGCGCCTAAAATAGAGT 58.385 37.500 4.18 0.00 0.00 3.24
4119 4504 6.369005 CAAGAATCATGCGCCTAAAATAGAG 58.631 40.000 4.18 0.00 0.00 2.43
4260 4647 2.825532 GGCAAACCTAGGATCAAAGCAA 59.174 45.455 17.98 0.00 0.00 3.91
4262 4649 1.751351 GGGCAAACCTAGGATCAAAGC 59.249 52.381 17.98 10.00 35.85 3.51
4263 4650 2.291540 TGGGGCAAACCTAGGATCAAAG 60.292 50.000 17.98 0.00 40.03 2.77
4264 4651 1.713647 TGGGGCAAACCTAGGATCAAA 59.286 47.619 17.98 0.00 40.03 2.69
4265 4652 1.005450 GTGGGGCAAACCTAGGATCAA 59.995 52.381 17.98 0.00 40.03 2.57
4267 4654 0.106669 GGTGGGGCAAACCTAGGATC 60.107 60.000 17.98 0.70 40.03 3.36
4268 4655 0.849094 TGGTGGGGCAAACCTAGGAT 60.849 55.000 17.98 0.00 38.60 3.24
4269 4656 1.068943 TTGGTGGGGCAAACCTAGGA 61.069 55.000 17.98 0.00 38.60 2.94
4273 4662 2.640284 ATATTTGGTGGGGCAAACCT 57.360 45.000 9.00 0.00 38.60 3.50
4349 4738 6.687604 ACCAACTGTACTTCATATTTTTGGC 58.312 36.000 0.00 0.00 35.40 4.52
4350 4739 9.840427 CTTACCAACTGTACTTCATATTTTTGG 57.160 33.333 0.00 0.00 37.56 3.28
4351 4740 9.840427 CCTTACCAACTGTACTTCATATTTTTG 57.160 33.333 0.00 0.00 0.00 2.44
4366 4755 2.094675 CCAATGGCTCCTTACCAACTG 58.905 52.381 0.00 0.00 41.49 3.16
4426 4815 4.095782 CCAACATGTACCTTACCGATTTGG 59.904 45.833 0.00 0.00 46.41 3.28
4427 4816 4.438200 GCCAACATGTACCTTACCGATTTG 60.438 45.833 0.00 0.00 0.00 2.32
4432 4837 2.396590 AGCCAACATGTACCTTACCG 57.603 50.000 0.00 0.00 0.00 4.02
4458 4863 8.506168 TGAGAAAAGCAATAAGGGTATGTTAG 57.494 34.615 0.00 0.00 0.00 2.34
4459 4864 9.474313 AATGAGAAAAGCAATAAGGGTATGTTA 57.526 29.630 0.00 0.00 0.00 2.41
4474 4879 4.328169 GGCTACAATGCAAATGAGAAAAGC 59.672 41.667 9.59 9.03 34.04 3.51
4476 4881 5.465532 TGGCTACAATGCAAATGAGAAAA 57.534 34.783 9.59 0.00 34.04 2.29
4553 4958 8.996271 CAGCAGCATGAAAACATAATAGATAGA 58.004 33.333 0.00 0.00 39.69 1.98
4636 5652 7.068103 ACAATGAAACAGACACAGACCAATTAA 59.932 33.333 0.00 0.00 0.00 1.40
4638 5654 5.360714 ACAATGAAACAGACACAGACCAATT 59.639 36.000 0.00 0.00 0.00 2.32
4639 5655 4.889409 ACAATGAAACAGACACAGACCAAT 59.111 37.500 0.00 0.00 0.00 3.16
4649 5665 2.887152 AGGAAGCCACAATGAAACAGAC 59.113 45.455 0.00 0.00 0.00 3.51
4653 5669 2.352127 GCAGAGGAAGCCACAATGAAAC 60.352 50.000 0.00 0.00 0.00 2.78
4658 5674 0.694771 TGAGCAGAGGAAGCCACAAT 59.305 50.000 0.00 0.00 0.00 2.71
4661 5677 0.898320 TACTGAGCAGAGGAAGCCAC 59.102 55.000 4.21 0.00 0.00 5.01
4692 5708 7.136289 TGGATACTAACGTTTGAAAATCACC 57.864 36.000 16.59 9.37 37.61 4.02
4693 5709 8.071368 TGTTGGATACTAACGTTTGAAAATCAC 58.929 33.333 16.59 10.55 37.61 3.06
4694 5710 8.155821 TGTTGGATACTAACGTTTGAAAATCA 57.844 30.769 16.59 5.38 37.61 2.57
4697 5713 8.460428 AGTTTGTTGGATACTAACGTTTGAAAA 58.540 29.630 16.59 2.19 44.06 2.29
4705 5721 9.142515 TGTGTATTAGTTTGTTGGATACTAACG 57.857 33.333 0.00 0.00 44.06 3.18
4730 5746 7.849160 ACTATGGAGTCCATTGAGATATGATG 58.151 38.462 32.07 6.68 42.23 3.07
4744 5760 8.330734 CCACTACGGATATAGACTATGGAGTCC 61.331 48.148 0.73 0.73 45.33 3.85
4763 5779 2.036958 TGATTTGCCATCCCACTACG 57.963 50.000 0.00 0.00 0.00 3.51
4765 5781 5.104151 TCACTAATGATTTGCCATCCCACTA 60.104 40.000 0.00 0.00 0.00 2.74
4787 5911 7.504924 AAACATCGAAACAGTTTCCTAATCA 57.495 32.000 18.58 0.00 36.30 2.57
4943 6087 1.470098 CTCTCTTTTTGCCATCCCACG 59.530 52.381 0.00 0.00 0.00 4.94
5059 6203 7.093988 TGCCATTAACACAGCATTAGTTACAAT 60.094 33.333 0.00 0.00 0.00 2.71
5099 6243 7.417456 GGAAGTAGAAACACCAAACCAAGAAAT 60.417 37.037 0.00 0.00 0.00 2.17
5115 6259 6.260050 CACAGTAGTTGCTTTGGAAGTAGAAA 59.740 38.462 0.00 0.00 0.00 2.52
5122 6266 2.618241 CAGCACAGTAGTTGCTTTGGAA 59.382 45.455 0.00 0.00 36.69 3.53
5138 6282 2.541588 CCACTGTTAGCAAACACAGCAC 60.542 50.000 0.00 0.00 43.72 4.40
5139 6283 1.675483 CCACTGTTAGCAAACACAGCA 59.325 47.619 0.00 0.00 43.72 4.41
5140 6284 1.676006 ACCACTGTTAGCAAACACAGC 59.324 47.619 0.00 0.00 43.72 4.40
5173 6318 8.294954 TCAAATGGTAAGTTCAAGGTTTACAA 57.705 30.769 0.00 0.00 0.00 2.41
5188 6366 8.961634 TCATTTCGATGGTAATTCAAATGGTAA 58.038 29.630 0.00 0.00 33.78 2.85
5205 6383 5.292765 AGAGTTGCGTATCATCATTTCGAT 58.707 37.500 0.00 0.00 33.27 3.59
5206 6384 4.682787 AGAGTTGCGTATCATCATTTCGA 58.317 39.130 0.00 0.00 0.00 3.71
5214 6393 2.103263 GAGGGGAAGAGTTGCGTATCAT 59.897 50.000 0.00 0.00 0.00 2.45
5220 6399 1.219393 GGAGAGGGGAAGAGTTGCG 59.781 63.158 0.00 0.00 0.00 4.85
5228 6407 0.911525 CAAGAGCCAGGAGAGGGGAA 60.912 60.000 0.00 0.00 0.00 3.97
5235 6414 3.123620 GTGCGCAAGAGCCAGGAG 61.124 66.667 14.00 0.00 43.02 3.69
5236 6415 1.898330 TATGTGCGCAAGAGCCAGGA 61.898 55.000 14.00 0.00 43.02 3.86
5237 6416 1.450134 TATGTGCGCAAGAGCCAGG 60.450 57.895 14.00 0.00 43.02 4.45
5238 6417 1.020861 TGTATGTGCGCAAGAGCCAG 61.021 55.000 14.00 0.00 43.02 4.85
5239 6418 1.003959 TGTATGTGCGCAAGAGCCA 60.004 52.632 14.00 5.72 43.02 4.75
5240 6419 1.425428 GTGTATGTGCGCAAGAGCC 59.575 57.895 14.00 0.00 43.02 4.70
5241 6420 1.059369 CGTGTATGTGCGCAAGAGC 59.941 57.895 14.00 0.00 43.02 4.09
5248 6427 1.852280 CATACTGTCCGTGTATGTGCG 59.148 52.381 0.00 0.00 41.13 5.34
5256 6435 5.153513 CAAAAACAATCCATACTGTCCGTG 58.846 41.667 0.00 0.00 0.00 4.94
5266 6445 5.478679 TCCACCGATAACAAAAACAATCCAT 59.521 36.000 0.00 0.00 0.00 3.41
5278 6457 3.942748 GCCAATTTACTCCACCGATAACA 59.057 43.478 0.00 0.00 0.00 2.41
5285 6464 1.676006 CATCGGCCAATTTACTCCACC 59.324 52.381 2.24 0.00 0.00 4.61
5348 6549 8.028938 CCACAATATTAAACCCTATTGCTATGC 58.971 37.037 6.49 0.00 38.38 3.14
5350 6551 9.875708 TTCCACAATATTAAACCCTATTGCTAT 57.124 29.630 6.49 0.00 38.38 2.97
5356 6557 9.821240 TGCATATTCCACAATATTAAACCCTAT 57.179 29.630 0.00 0.00 33.53 2.57
5357 6558 9.647918 TTGCATATTCCACAATATTAAACCCTA 57.352 29.630 0.00 0.00 33.53 3.53
5358 6559 8.546083 TTGCATATTCCACAATATTAAACCCT 57.454 30.769 0.00 0.00 33.53 4.34
5361 6562 9.533253 AAGCTTGCATATTCCACAATATTAAAC 57.467 29.630 0.00 0.00 33.53 2.01
5364 6565 8.462589 TGAAGCTTGCATATTCCACAATATTA 57.537 30.769 2.10 0.00 33.53 0.98
5365 6566 7.350744 TGAAGCTTGCATATTCCACAATATT 57.649 32.000 2.10 0.00 33.53 1.28
5366 6567 6.964807 TGAAGCTTGCATATTCCACAATAT 57.035 33.333 2.10 0.00 35.84 1.28
5367 6568 6.016024 GGATGAAGCTTGCATATTCCACAATA 60.016 38.462 2.10 0.00 0.00 1.90
5368 6569 5.221382 GGATGAAGCTTGCATATTCCACAAT 60.221 40.000 2.10 0.00 0.00 2.71
5369 6570 4.098349 GGATGAAGCTTGCATATTCCACAA 59.902 41.667 2.10 0.00 0.00 3.33
5370 6571 3.633525 GGATGAAGCTTGCATATTCCACA 59.366 43.478 2.10 0.00 0.00 4.17
5371 6572 3.633525 TGGATGAAGCTTGCATATTCCAC 59.366 43.478 2.10 0.00 0.00 4.02
5372 6573 3.900971 TGGATGAAGCTTGCATATTCCA 58.099 40.909 2.10 9.27 0.00 3.53
5373 6574 4.340381 AGTTGGATGAAGCTTGCATATTCC 59.660 41.667 2.10 6.85 0.00 3.01
5374 6575 5.163581 ACAGTTGGATGAAGCTTGCATATTC 60.164 40.000 2.10 0.00 0.00 1.75
5375 6576 4.708421 ACAGTTGGATGAAGCTTGCATATT 59.292 37.500 2.10 0.00 0.00 1.28
5376 6577 4.097437 CACAGTTGGATGAAGCTTGCATAT 59.903 41.667 2.10 0.00 0.00 1.78
5377 6578 3.441222 CACAGTTGGATGAAGCTTGCATA 59.559 43.478 2.10 0.00 0.00 3.14
5378 6579 2.230508 CACAGTTGGATGAAGCTTGCAT 59.769 45.455 2.10 7.42 0.00 3.96
5379 6580 1.610038 CACAGTTGGATGAAGCTTGCA 59.390 47.619 2.10 1.94 0.00 4.08
5380 6581 1.668047 GCACAGTTGGATGAAGCTTGC 60.668 52.381 2.10 0.00 0.00 4.01
5381 6582 1.400629 CGCACAGTTGGATGAAGCTTG 60.401 52.381 2.10 0.00 0.00 4.01
5382 6583 0.877071 CGCACAGTTGGATGAAGCTT 59.123 50.000 0.00 0.00 0.00 3.74
5383 6584 0.035317 TCGCACAGTTGGATGAAGCT 59.965 50.000 0.00 0.00 0.00 3.74
5384 6585 1.089920 ATCGCACAGTTGGATGAAGC 58.910 50.000 0.00 0.00 0.00 3.86
5385 6586 4.944962 TTAATCGCACAGTTGGATGAAG 57.055 40.909 0.00 0.00 0.00 3.02
5386 6587 6.017192 CCATATTAATCGCACAGTTGGATGAA 60.017 38.462 0.00 0.00 0.00 2.57
5387 6588 5.469760 CCATATTAATCGCACAGTTGGATGA 59.530 40.000 0.00 0.00 0.00 2.92
5388 6589 5.239306 ACCATATTAATCGCACAGTTGGATG 59.761 40.000 0.00 0.00 0.00 3.51
5389 6590 5.376625 ACCATATTAATCGCACAGTTGGAT 58.623 37.500 0.00 0.00 0.00 3.41
5390 6591 4.776349 ACCATATTAATCGCACAGTTGGA 58.224 39.130 0.00 0.00 0.00 3.53
5391 6592 4.816385 AGACCATATTAATCGCACAGTTGG 59.184 41.667 0.00 0.00 0.00 3.77
5392 6593 5.991328 AGACCATATTAATCGCACAGTTG 57.009 39.130 0.00 0.00 0.00 3.16
5393 6594 7.050970 TCTAGACCATATTAATCGCACAGTT 57.949 36.000 0.00 0.00 0.00 3.16
5394 6595 6.650427 TCTAGACCATATTAATCGCACAGT 57.350 37.500 0.00 0.00 0.00 3.55
5395 6596 5.574830 GCTCTAGACCATATTAATCGCACAG 59.425 44.000 0.00 0.00 0.00 3.66
5396 6597 5.470368 GCTCTAGACCATATTAATCGCACA 58.530 41.667 0.00 0.00 0.00 4.57
5397 6598 4.559251 CGCTCTAGACCATATTAATCGCAC 59.441 45.833 0.00 0.00 0.00 5.34
5398 6599 4.217767 ACGCTCTAGACCATATTAATCGCA 59.782 41.667 0.00 0.00 0.00 5.10
5399 6600 4.734917 ACGCTCTAGACCATATTAATCGC 58.265 43.478 0.00 0.00 0.00 4.58
5400 6601 7.064847 AGACTACGCTCTAGACCATATTAATCG 59.935 40.741 0.00 0.00 0.00 3.34
5401 6602 8.178964 CAGACTACGCTCTAGACCATATTAATC 58.821 40.741 0.00 0.00 0.00 1.75
5402 6603 7.121463 CCAGACTACGCTCTAGACCATATTAAT 59.879 40.741 0.00 0.00 0.00 1.40
5403 6604 6.430308 CCAGACTACGCTCTAGACCATATTAA 59.570 42.308 0.00 0.00 0.00 1.40
5404 6605 5.938710 CCAGACTACGCTCTAGACCATATTA 59.061 44.000 0.00 0.00 0.00 0.98
5405 6606 4.762765 CCAGACTACGCTCTAGACCATATT 59.237 45.833 0.00 0.00 0.00 1.28
5406 6607 4.041815 TCCAGACTACGCTCTAGACCATAT 59.958 45.833 0.00 0.00 0.00 1.78
5407 6608 3.390311 TCCAGACTACGCTCTAGACCATA 59.610 47.826 0.00 0.00 0.00 2.74
5408 6609 2.172930 TCCAGACTACGCTCTAGACCAT 59.827 50.000 0.00 0.00 0.00 3.55
5409 6610 1.558294 TCCAGACTACGCTCTAGACCA 59.442 52.381 0.00 0.00 0.00 4.02
5410 6611 2.215196 CTCCAGACTACGCTCTAGACC 58.785 57.143 0.00 0.00 0.00 3.85
5411 6612 1.600485 GCTCCAGACTACGCTCTAGAC 59.400 57.143 0.00 0.00 0.00 2.59
5412 6613 1.209747 TGCTCCAGACTACGCTCTAGA 59.790 52.381 0.00 0.00 0.00 2.43
5424 6625 2.158769 TGCTTCAGAAAGTTGCTCCAGA 60.159 45.455 0.00 0.00 34.79 3.86
5425 6626 2.224606 TGCTTCAGAAAGTTGCTCCAG 58.775 47.619 0.00 0.00 34.79 3.86
5513 6725 4.631234 AGGGTACATACAATCTTCAGGGA 58.369 43.478 0.00 0.00 0.00 4.20
5530 6742 3.532232 AGAAGAGGACCATGAGTAGGGTA 59.468 47.826 0.00 0.00 41.95 3.69
5544 6756 6.688073 ACTTGGAAGTAATCAAGAAGAGGA 57.312 37.500 9.63 0.00 41.94 3.71
5545 6757 6.091441 CGAACTTGGAAGTAATCAAGAAGAGG 59.909 42.308 9.63 0.00 41.94 3.69
5546 6758 6.401581 GCGAACTTGGAAGTAATCAAGAAGAG 60.402 42.308 9.63 1.06 41.94 2.85
5547 6759 5.408604 GCGAACTTGGAAGTAATCAAGAAGA 59.591 40.000 9.63 0.00 41.94 2.87
5548 6760 5.390991 GGCGAACTTGGAAGTAATCAAGAAG 60.391 44.000 9.63 0.00 41.94 2.85
5550 6762 4.000988 GGCGAACTTGGAAGTAATCAAGA 58.999 43.478 9.63 0.00 41.94 3.02
5551 6763 4.003648 AGGCGAACTTGGAAGTAATCAAG 58.996 43.478 0.00 0.00 44.14 3.02
5553 6765 3.695830 AGGCGAACTTGGAAGTAATCA 57.304 42.857 0.00 0.00 38.57 2.57
5561 6773 7.632898 GCAGGATTATATATAGGCGAACTTGGA 60.633 40.741 0.00 0.00 0.00 3.53
5562 6774 6.480320 GCAGGATTATATATAGGCGAACTTGG 59.520 42.308 0.00 0.00 0.00 3.61
5563 6775 7.010552 GTGCAGGATTATATATAGGCGAACTTG 59.989 40.741 0.00 0.00 0.00 3.16
5564 6776 7.042335 GTGCAGGATTATATATAGGCGAACTT 58.958 38.462 0.00 0.00 0.00 2.66
5566 6778 6.338146 TGTGCAGGATTATATATAGGCGAAC 58.662 40.000 0.00 0.00 0.00 3.95
5579 6791 8.251026 GCACTATGTACTATATGTGCAGGATTA 58.749 37.037 17.85 0.00 46.64 1.75
5580 6792 7.099764 GCACTATGTACTATATGTGCAGGATT 58.900 38.462 17.85 0.00 46.64 3.01
5581 6793 6.634805 GCACTATGTACTATATGTGCAGGAT 58.365 40.000 17.85 0.00 46.64 3.24
5582 6794 6.025749 GCACTATGTACTATATGTGCAGGA 57.974 41.667 17.85 0.00 46.64 3.86
5590 6802 9.411801 CGACAGAAATTGCACTATGTACTATAT 57.588 33.333 0.00 0.00 0.00 0.86
5591 6803 8.626526 TCGACAGAAATTGCACTATGTACTATA 58.373 33.333 0.00 0.00 0.00 1.31
5592 6804 7.435488 GTCGACAGAAATTGCACTATGTACTAT 59.565 37.037 11.55 0.00 0.00 2.12
5593 6805 6.750501 GTCGACAGAAATTGCACTATGTACTA 59.249 38.462 11.55 0.00 0.00 1.82
5594 6806 5.577164 GTCGACAGAAATTGCACTATGTACT 59.423 40.000 11.55 0.00 0.00 2.73
5595 6807 5.220416 GGTCGACAGAAATTGCACTATGTAC 60.220 44.000 18.91 0.00 0.00 2.90
5598 6810 3.684305 TGGTCGACAGAAATTGCACTATG 59.316 43.478 18.91 0.00 0.00 2.23
5601 6813 2.254546 TGGTCGACAGAAATTGCACT 57.745 45.000 18.91 0.00 0.00 4.40
5611 6823 4.773323 TCAGATATAGCATGGTCGACAG 57.227 45.455 18.91 7.70 0.00 3.51
5614 6826 6.393171 CAAGATTCAGATATAGCATGGTCGA 58.607 40.000 0.00 0.00 0.00 4.20
5615 6827 5.579904 CCAAGATTCAGATATAGCATGGTCG 59.420 44.000 0.00 0.00 0.00 4.79
5617 6829 6.445451 ACCAAGATTCAGATATAGCATGGT 57.555 37.500 1.62 1.62 32.86 3.55
5621 6833 9.113838 GAAAGAAACCAAGATTCAGATATAGCA 57.886 33.333 0.00 0.00 0.00 3.49
5653 6865 9.133627 GCTAGGACAAAATTTTCTTCTCATTTC 57.866 33.333 0.00 0.00 0.00 2.17
5654 6866 7.809806 CGCTAGGACAAAATTTTCTTCTCATTT 59.190 33.333 0.00 0.00 0.00 2.32
5655 6867 7.308435 CGCTAGGACAAAATTTTCTTCTCATT 58.692 34.615 0.00 0.00 0.00 2.57
5656 6868 6.127897 CCGCTAGGACAAAATTTTCTTCTCAT 60.128 38.462 0.00 0.00 41.02 2.90
5657 6869 5.181245 CCGCTAGGACAAAATTTTCTTCTCA 59.819 40.000 0.00 0.00 41.02 3.27
5661 6873 3.509967 CCCCGCTAGGACAAAATTTTCTT 59.490 43.478 0.00 0.00 41.02 2.52
5663 6875 2.416836 GCCCCGCTAGGACAAAATTTTC 60.417 50.000 0.00 0.00 41.02 2.29
5680 6892 2.355010 AAGCAGAATCTACATGCCCC 57.645 50.000 0.00 0.00 40.89 5.80
5869 7085 3.400590 GTCGTCGGAACCACGCAC 61.401 66.667 9.61 6.73 37.18 5.34
5960 7176 1.224069 TGAAGCTGTTGCGAGTGCTC 61.224 55.000 0.00 0.00 45.42 4.26
5961 7177 1.227645 TGAAGCTGTTGCGAGTGCT 60.228 52.632 0.00 0.00 45.42 4.40
5987 7203 2.685388 TCTCTAGGTGATCTTCACTGCG 59.315 50.000 7.51 0.00 46.19 5.18
5993 7210 3.547746 AGTCGGTCTCTAGGTGATCTTC 58.452 50.000 0.00 0.00 0.00 2.87
6003 7220 3.562343 ATCACTGCTAGTCGGTCTCTA 57.438 47.619 0.00 0.00 30.14 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.