Multiple sequence alignment - TraesCS2A01G292600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G292600 chr2A 100.000 3002 0 0 1 3002 504073463 504070462 0.000000e+00 5544.0
1 TraesCS2A01G292600 chr2D 89.339 1135 59 30 1864 2983 372695714 372694627 0.000000e+00 1369.0
2 TraesCS2A01G292600 chr2D 85.865 1323 59 57 1 1246 372697410 372696139 0.000000e+00 1290.0
3 TraesCS2A01G292600 chr2D 95.122 328 9 4 1457 1780 372696049 372695725 7.420000e-141 510.0
4 TraesCS2A01G292600 chr2B 87.443 876 56 22 1868 2740 442307408 442306584 0.000000e+00 959.0
5 TraesCS2A01G292600 chr2B 82.370 1021 51 45 307 1246 442308891 442307919 0.000000e+00 769.0
6 TraesCS2A01G292600 chr2B 91.860 344 20 5 1440 1780 442307768 442307430 9.740000e-130 473.0
7 TraesCS2A01G292600 chr2B 90.950 221 4 4 1 217 442309252 442309044 1.760000e-72 283.0
8 TraesCS2A01G292600 chr2B 83.128 243 14 13 2751 2980 442306484 442306256 2.360000e-46 196.0
9 TraesCS2A01G292600 chr5B 95.238 42 1 1 1826 1867 679364545 679364505 6.950000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G292600 chr2A 504070462 504073463 3001 True 5544.000000 5544 100.000000 1 3002 1 chr2A.!!$R1 3001
1 TraesCS2A01G292600 chr2D 372694627 372697410 2783 True 1056.333333 1369 90.108667 1 2983 3 chr2D.!!$R1 2982
2 TraesCS2A01G292600 chr2B 442306256 442309252 2996 True 536.000000 959 87.150200 1 2980 5 chr2B.!!$R1 2979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.179029 AACCGACCTTGTTGTCCCAG 60.179 55.0 0.00 0.00 31.35 4.45 F
787 929 0.526954 CGCATTACTAGTTCCGCGGT 60.527 55.0 27.15 8.80 39.09 5.68 F
1311 1537 0.029834 TACTAACGGCCGATCGCTTC 59.970 55.0 35.90 0.39 37.74 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1292 1518 0.029834 GAAGCGATCGGCCGTTAGTA 59.970 55.0 27.15 5.24 45.17 1.82 R
1830 2078 0.035439 ACAATACTTGTCGCTGGGGG 60.035 55.0 0.00 0.00 40.56 5.40 R
2297 2546 0.036388 TTCCAGCGATGTTCACCCTC 60.036 55.0 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.142469 ACTCAACAAGAAAAACCGACCTTG 60.142 41.667 0.00 0.00 41.12 3.61
36 37 0.179029 AACCGACCTTGTTGTCCCAG 60.179 55.000 0.00 0.00 31.35 4.45
120 121 2.170260 GACAACACGCATCCACCACG 62.170 60.000 0.00 0.00 0.00 4.94
186 187 4.097361 GACGGCTTGTCCCCCTCC 62.097 72.222 0.00 0.00 42.04 4.30
199 200 1.041437 CCCCTCCATCGTCTTCCTAC 58.959 60.000 0.00 0.00 0.00 3.18
226 231 1.970917 CTGCCGCAACGCCTTTCTAG 61.971 60.000 0.00 0.00 0.00 2.43
228 233 2.032634 CCGCAACGCCTTTCTAGCA 61.033 57.895 0.00 0.00 0.00 3.49
229 234 1.132640 CGCAACGCCTTTCTAGCAC 59.867 57.895 0.00 0.00 0.00 4.40
248 349 3.804873 GCACTATAGCTTAGCCACTCAAC 59.195 47.826 0.00 0.00 0.00 3.18
249 350 4.442192 GCACTATAGCTTAGCCACTCAACT 60.442 45.833 0.00 0.00 0.00 3.16
250 351 5.285651 CACTATAGCTTAGCCACTCAACTC 58.714 45.833 0.00 0.00 0.00 3.01
251 352 4.956700 ACTATAGCTTAGCCACTCAACTCA 59.043 41.667 0.00 0.00 0.00 3.41
252 353 4.826274 ATAGCTTAGCCACTCAACTCAA 57.174 40.909 0.00 0.00 0.00 3.02
253 354 3.492102 AGCTTAGCCACTCAACTCAAA 57.508 42.857 0.00 0.00 0.00 2.69
254 355 3.820557 AGCTTAGCCACTCAACTCAAAA 58.179 40.909 0.00 0.00 0.00 2.44
255 356 4.401925 AGCTTAGCCACTCAACTCAAAAT 58.598 39.130 0.00 0.00 0.00 1.82
261 362 4.217118 AGCCACTCAACTCAAAATAAGCTG 59.783 41.667 0.00 0.00 0.00 4.24
266 367 0.811281 ACTCAAAATAAGCTGCGCCC 59.189 50.000 4.18 0.00 0.00 6.13
285 386 0.951558 CAAGTGCAAGTGGTGGTACC 59.048 55.000 4.43 4.43 39.22 3.34
286 387 0.843984 AAGTGCAAGTGGTGGTACCT 59.156 50.000 14.36 0.00 39.58 3.08
287 388 1.724545 AGTGCAAGTGGTGGTACCTA 58.275 50.000 14.36 0.00 39.58 3.08
288 389 2.051692 AGTGCAAGTGGTGGTACCTAA 58.948 47.619 14.36 0.00 39.58 2.69
289 390 2.038557 AGTGCAAGTGGTGGTACCTAAG 59.961 50.000 14.36 0.00 39.58 2.18
290 391 2.038033 GTGCAAGTGGTGGTACCTAAGA 59.962 50.000 14.36 0.00 39.58 2.10
291 392 2.706723 TGCAAGTGGTGGTACCTAAGAA 59.293 45.455 14.36 0.00 39.58 2.52
292 393 3.136809 TGCAAGTGGTGGTACCTAAGAAA 59.863 43.478 14.36 0.00 39.58 2.52
293 394 3.751698 GCAAGTGGTGGTACCTAAGAAAG 59.248 47.826 14.36 0.00 39.58 2.62
294 395 4.504340 GCAAGTGGTGGTACCTAAGAAAGA 60.504 45.833 14.36 0.00 39.58 2.52
295 396 5.617252 CAAGTGGTGGTACCTAAGAAAGAA 58.383 41.667 14.36 0.00 39.58 2.52
296 397 5.899631 AGTGGTGGTACCTAAGAAAGAAA 57.100 39.130 14.36 0.00 39.58 2.52
297 398 5.866207 AGTGGTGGTACCTAAGAAAGAAAG 58.134 41.667 14.36 0.00 39.58 2.62
298 399 5.605488 AGTGGTGGTACCTAAGAAAGAAAGA 59.395 40.000 14.36 0.00 39.58 2.52
299 400 6.100714 AGTGGTGGTACCTAAGAAAGAAAGAA 59.899 38.462 14.36 0.00 39.58 2.52
300 401 6.769341 GTGGTGGTACCTAAGAAAGAAAGAAA 59.231 38.462 14.36 0.00 39.58 2.52
301 402 6.996282 TGGTGGTACCTAAGAAAGAAAGAAAG 59.004 38.462 14.36 0.00 39.58 2.62
302 403 7.147444 TGGTGGTACCTAAGAAAGAAAGAAAGA 60.147 37.037 14.36 0.00 39.58 2.52
376 477 4.415150 CCCCCGCACTGCACTGAT 62.415 66.667 1.11 0.00 0.00 2.90
377 478 2.821366 CCCCGCACTGCACTGATC 60.821 66.667 1.11 0.00 0.00 2.92
378 479 3.190849 CCCGCACTGCACTGATCG 61.191 66.667 1.11 0.00 0.00 3.69
629 758 2.364647 TGCAAACCACTGAAATGATGCA 59.635 40.909 0.00 0.00 0.00 3.96
630 759 3.007074 TGCAAACCACTGAAATGATGCAT 59.993 39.130 0.00 0.00 0.00 3.96
631 760 3.369756 GCAAACCACTGAAATGATGCATG 59.630 43.478 2.46 0.00 0.00 4.06
632 761 2.953466 ACCACTGAAATGATGCATGC 57.047 45.000 11.82 11.82 0.00 4.06
653 782 4.082787 TGCTTCCGTCCTTTGATTTGAATC 60.083 41.667 0.00 0.00 35.97 2.52
682 811 4.848841 CGCTTTTGTTTTGTTTTGTTTCCC 59.151 37.500 0.00 0.00 0.00 3.97
683 812 4.848841 GCTTTTGTTTTGTTTTGTTTCCCG 59.151 37.500 0.00 0.00 0.00 5.14
684 813 5.358298 TTTTGTTTTGTTTTGTTTCCCGG 57.642 34.783 0.00 0.00 0.00 5.73
757 891 6.942976 TCACTTCCCCTTTTATACTGTACAG 58.057 40.000 21.44 21.44 0.00 2.74
787 929 0.526954 CGCATTACTAGTTCCGCGGT 60.527 55.000 27.15 8.80 39.09 5.68
876 1024 2.218603 CGGTTGGTGATATAAGTGGCC 58.781 52.381 0.00 0.00 0.00 5.36
922 1097 2.080286 ACGCCAACTAGTAGCAACTG 57.920 50.000 15.80 1.45 36.36 3.16
924 1099 2.263077 CGCCAACTAGTAGCAACTGAG 58.737 52.381 15.80 0.00 36.36 3.35
948 1123 3.545078 AGTCGATTGATTACGTTACGTGC 59.455 43.478 21.22 10.12 41.39 5.34
949 1124 2.527087 TCGATTGATTACGTTACGTGCG 59.473 45.455 21.22 11.61 41.39 5.34
950 1125 2.277057 CGATTGATTACGTTACGTGCGT 59.723 45.455 21.22 20.30 41.39 5.24
951 1126 3.595575 CGATTGATTACGTTACGTGCGTC 60.596 47.826 21.22 14.79 41.39 5.19
953 1128 1.136113 TGATTACGTTACGTGCGTCGA 60.136 47.619 21.22 12.48 41.39 4.20
974 1149 3.171388 AGGGGTGCCGATCCATCC 61.171 66.667 0.00 0.00 35.16 3.51
982 1157 1.278985 TGCCGATCCATCCATCCATAC 59.721 52.381 0.00 0.00 0.00 2.39
983 1158 1.407437 GCCGATCCATCCATCCATACC 60.407 57.143 0.00 0.00 0.00 2.73
984 1159 2.191400 CCGATCCATCCATCCATACCT 58.809 52.381 0.00 0.00 0.00 3.08
1246 1447 4.500887 GCCTAGCATTCATACGACAGGTAA 60.501 45.833 0.00 0.00 34.09 2.85
1247 1448 5.597806 CCTAGCATTCATACGACAGGTAAA 58.402 41.667 0.00 0.00 34.09 2.01
1248 1449 5.462398 CCTAGCATTCATACGACAGGTAAAC 59.538 44.000 0.00 0.00 34.09 2.01
1253 1479 6.198591 GCATTCATACGACAGGTAAACTACTC 59.801 42.308 0.00 0.00 34.09 2.59
1254 1480 7.481642 CATTCATACGACAGGTAAACTACTCT 58.518 38.462 0.00 0.00 34.09 3.24
1265 1491 7.028361 CAGGTAAACTACTCTTCTTCGGTTAG 58.972 42.308 0.00 0.00 0.00 2.34
1266 1492 6.718912 AGGTAAACTACTCTTCTTCGGTTAGT 59.281 38.462 0.00 0.00 0.00 2.24
1268 1494 8.515414 GGTAAACTACTCTTCTTCGGTTAGTAA 58.485 37.037 0.00 0.00 0.00 2.24
1272 1498 9.460019 AACTACTCTTCTTCGGTTAGTAATACT 57.540 33.333 0.00 0.00 0.00 2.12
1278 1504 9.050601 TCTTCTTCGGTTAGTAATACTACTAGC 57.949 37.037 0.00 0.00 40.82 3.42
1289 1515 8.820153 AGTAATACTACTAGCCAAGTGTAAGT 57.180 34.615 0.00 0.00 39.39 2.24
1290 1516 9.911788 AGTAATACTACTAGCCAAGTGTAAGTA 57.088 33.333 0.00 1.14 39.39 2.24
1294 1520 7.622893 ACTACTAGCCAAGTGTAAGTAGTAC 57.377 40.000 10.80 0.00 46.74 2.73
1295 1521 7.401246 ACTACTAGCCAAGTGTAAGTAGTACT 58.599 38.462 10.80 0.00 46.74 2.73
1296 1522 8.543774 ACTACTAGCCAAGTGTAAGTAGTACTA 58.456 37.037 10.80 0.00 46.74 1.82
1297 1523 9.388506 CTACTAGCCAAGTGTAAGTAGTACTAA 57.611 37.037 3.61 0.00 39.39 2.24
1298 1524 8.049655 ACTAGCCAAGTGTAAGTAGTACTAAC 57.950 38.462 3.61 0.00 36.93 2.34
1299 1525 5.947443 AGCCAAGTGTAAGTAGTACTAACG 58.053 41.667 3.61 0.00 33.46 3.18
1300 1526 5.098211 GCCAAGTGTAAGTAGTACTAACGG 58.902 45.833 3.61 2.63 33.46 4.44
1301 1527 5.098211 CCAAGTGTAAGTAGTACTAACGGC 58.902 45.833 3.61 0.00 33.46 5.68
1302 1528 4.972514 AGTGTAAGTAGTACTAACGGCC 57.027 45.455 3.61 0.00 33.46 6.13
1303 1529 3.375299 AGTGTAAGTAGTACTAACGGCCG 59.625 47.826 26.86 26.86 33.46 6.13
1304 1530 3.374058 GTGTAAGTAGTACTAACGGCCGA 59.626 47.826 35.90 9.83 33.46 5.54
1305 1531 4.035675 GTGTAAGTAGTACTAACGGCCGAT 59.964 45.833 35.90 24.93 33.46 4.18
1306 1532 3.978718 AAGTAGTACTAACGGCCGATC 57.021 47.619 35.90 8.12 0.00 3.69
1307 1533 1.869767 AGTAGTACTAACGGCCGATCG 59.130 52.381 35.90 19.85 0.00 3.69
1308 1534 0.588252 TAGTACTAACGGCCGATCGC 59.412 55.000 35.90 15.99 0.00 4.58
1309 1535 1.099879 AGTACTAACGGCCGATCGCT 61.100 55.000 35.90 18.03 37.74 4.93
1310 1536 0.248784 GTACTAACGGCCGATCGCTT 60.249 55.000 35.90 18.20 37.74 4.68
1311 1537 0.029834 TACTAACGGCCGATCGCTTC 59.970 55.000 35.90 0.39 37.74 3.86
1312 1538 1.226859 CTAACGGCCGATCGCTTCA 60.227 57.895 35.90 1.87 37.74 3.02
1313 1539 0.597637 CTAACGGCCGATCGCTTCAT 60.598 55.000 35.90 1.64 37.74 2.57
1314 1540 0.874175 TAACGGCCGATCGCTTCATG 60.874 55.000 35.90 0.00 37.74 3.07
1315 1541 3.341043 CGGCCGATCGCTTCATGG 61.341 66.667 24.07 0.00 37.74 3.66
1316 1542 3.654020 GGCCGATCGCTTCATGGC 61.654 66.667 10.32 5.61 44.98 4.40
1317 1543 2.896854 GCCGATCGCTTCATGGCA 60.897 61.111 10.32 0.00 45.06 4.92
1318 1544 2.256591 GCCGATCGCTTCATGGCAT 61.257 57.895 10.32 0.00 45.06 4.40
1319 1545 1.789078 GCCGATCGCTTCATGGCATT 61.789 55.000 10.32 0.00 45.06 3.56
1320 1546 1.511850 CCGATCGCTTCATGGCATTA 58.488 50.000 10.32 0.00 0.00 1.90
1321 1547 1.872952 CCGATCGCTTCATGGCATTAA 59.127 47.619 10.32 0.00 0.00 1.40
1322 1548 2.349817 CCGATCGCTTCATGGCATTAAC 60.350 50.000 10.32 0.00 0.00 2.01
1323 1549 2.545526 CGATCGCTTCATGGCATTAACT 59.454 45.455 0.26 0.00 0.00 2.24
1324 1550 3.740832 CGATCGCTTCATGGCATTAACTA 59.259 43.478 0.26 0.00 0.00 2.24
1344 1570 4.715297 ACTAGGAGACCCAAAATGACGTAT 59.285 41.667 0.00 0.00 33.88 3.06
1345 1571 5.895534 ACTAGGAGACCCAAAATGACGTATA 59.104 40.000 0.00 0.00 33.88 1.47
1348 1574 5.895534 AGGAGACCCAAAATGACGTATACTA 59.104 40.000 0.56 0.00 33.88 1.82
1349 1575 6.040616 AGGAGACCCAAAATGACGTATACTAG 59.959 42.308 0.56 0.00 33.88 2.57
1350 1576 6.183360 GGAGACCCAAAATGACGTATACTAGT 60.183 42.308 0.00 0.00 0.00 2.57
1351 1577 7.013655 GGAGACCCAAAATGACGTATACTAGTA 59.986 40.741 4.77 4.77 0.00 1.82
1352 1578 7.710896 AGACCCAAAATGACGTATACTAGTAC 58.289 38.462 4.31 0.00 0.00 2.73
1353 1579 7.340232 AGACCCAAAATGACGTATACTAGTACA 59.660 37.037 4.31 0.00 0.00 2.90
1354 1580 7.486647 ACCCAAAATGACGTATACTAGTACAG 58.513 38.462 4.31 2.31 0.00 2.74
1355 1581 7.123247 ACCCAAAATGACGTATACTAGTACAGT 59.877 37.037 4.31 5.63 41.62 3.55
1356 1582 8.623903 CCCAAAATGACGTATACTAGTACAGTA 58.376 37.037 4.31 1.72 43.89 2.74
1357 1583 9.443283 CCAAAATGACGTATACTAGTACAGTAC 57.557 37.037 4.31 2.05 42.56 2.73
1358 1584 9.443283 CAAAATGACGTATACTAGTACAGTACC 57.557 37.037 4.31 0.00 42.56 3.34
1359 1585 8.737168 AAATGACGTATACTAGTACAGTACCA 57.263 34.615 4.31 2.20 42.56 3.25
1360 1586 8.737168 AATGACGTATACTAGTACAGTACCAA 57.263 34.615 4.31 0.00 42.56 3.67
1361 1587 7.539712 TGACGTATACTAGTACAGTACCAAC 57.460 40.000 4.31 0.00 42.56 3.77
1362 1588 7.102993 TGACGTATACTAGTACAGTACCAACA 58.897 38.462 4.31 1.80 42.56 3.33
1365 1591 6.854892 CGTATACTAGTACAGTACCAACATGC 59.145 42.308 4.31 0.24 42.56 4.06
1367 1593 5.677319 ACTAGTACAGTACCAACATGCAT 57.323 39.130 7.13 0.00 34.98 3.96
1380 1606 4.624024 CCAACATGCATGATCAGTTTGTTC 59.376 41.667 32.75 0.00 0.00 3.18
1381 1607 5.224135 CAACATGCATGATCAGTTTGTTCA 58.776 37.500 32.75 0.00 31.50 3.18
1382 1608 5.055642 ACATGCATGATCAGTTTGTTCAG 57.944 39.130 32.75 0.59 30.59 3.02
1383 1609 3.564235 TGCATGATCAGTTTGTTCAGC 57.436 42.857 0.09 0.00 30.59 4.26
1385 1611 2.416431 GCATGATCAGTTTGTTCAGCCC 60.416 50.000 0.09 0.00 30.59 5.19
1386 1612 2.655090 TGATCAGTTTGTTCAGCCCA 57.345 45.000 0.00 0.00 0.00 5.36
1387 1613 2.507484 TGATCAGTTTGTTCAGCCCAG 58.493 47.619 0.00 0.00 0.00 4.45
1388 1614 2.158623 TGATCAGTTTGTTCAGCCCAGT 60.159 45.455 0.00 0.00 0.00 4.00
1390 1616 0.588252 CAGTTTGTTCAGCCCAGTCG 59.412 55.000 0.00 0.00 0.00 4.18
1391 1617 0.535102 AGTTTGTTCAGCCCAGTCGG 60.535 55.000 0.00 0.00 0.00 4.79
1405 1631 4.056092 CCAGTCGGGGAACTAATAACTC 57.944 50.000 0.00 0.00 0.00 3.01
1414 1640 6.534079 CGGGGAACTAATAACTCTGTAACAAG 59.466 42.308 0.00 0.00 0.00 3.16
1450 1689 6.790282 AGCTTTGTTTTGTTTTGTGTTTGTT 58.210 28.000 0.00 0.00 0.00 2.83
1453 1696 8.047283 GCTTTGTTTTGTTTTGTGTTTGTTTTC 58.953 29.630 0.00 0.00 0.00 2.29
1597 1840 1.202428 GGACTTCCTGGACGTGATAGC 60.202 57.143 10.91 0.00 0.00 2.97
1598 1841 1.751924 GACTTCCTGGACGTGATAGCT 59.248 52.381 10.91 0.00 0.00 3.32
1600 1843 2.952978 ACTTCCTGGACGTGATAGCTAG 59.047 50.000 4.87 0.00 0.00 3.42
1601 1844 1.982660 TCCTGGACGTGATAGCTAGG 58.017 55.000 0.00 0.00 0.00 3.02
1614 1859 7.040548 ACGTGATAGCTAGGAATTCTACTTACC 60.041 40.741 5.23 0.00 0.00 2.85
1634 1879 9.060347 ACTTACCTTCACTGCATTCATTATATG 57.940 33.333 0.00 0.00 0.00 1.78
1700 1948 7.913297 CGAACAAAACAGGAGAAAGAATACAAA 59.087 33.333 0.00 0.00 0.00 2.83
1770 2018 4.093743 TGTCAACAGGCTAATAGAGGTGA 58.906 43.478 0.00 0.00 0.00 4.02
1771 2019 4.081642 TGTCAACAGGCTAATAGAGGTGAC 60.082 45.833 14.67 14.67 0.00 3.67
1772 2020 3.451178 TCAACAGGCTAATAGAGGTGACC 59.549 47.826 0.00 0.00 0.00 4.02
1773 2021 3.406512 ACAGGCTAATAGAGGTGACCT 57.593 47.619 2.41 2.41 36.03 3.85
1774 2022 3.034635 ACAGGCTAATAGAGGTGACCTG 58.965 50.000 9.89 4.65 46.83 4.00
1775 2023 3.300388 CAGGCTAATAGAGGTGACCTGA 58.700 50.000 9.89 0.00 44.80 3.86
1776 2024 3.068873 CAGGCTAATAGAGGTGACCTGAC 59.931 52.174 9.89 0.00 44.80 3.51
1777 2025 2.365941 GGCTAATAGAGGTGACCTGACC 59.634 54.545 9.89 0.00 31.76 4.02
1783 2031 3.240670 AGGTGACCTGACCTCAACA 57.759 52.632 1.77 0.00 43.33 3.33
1784 2032 1.734655 AGGTGACCTGACCTCAACAT 58.265 50.000 1.77 0.00 43.33 2.71
1785 2033 1.625818 AGGTGACCTGACCTCAACATC 59.374 52.381 1.77 0.00 43.33 3.06
1786 2034 1.347707 GGTGACCTGACCTCAACATCA 59.652 52.381 0.00 0.00 32.69 3.07
1787 2035 2.026822 GGTGACCTGACCTCAACATCAT 60.027 50.000 0.00 0.00 32.69 2.45
1788 2036 3.005554 GTGACCTGACCTCAACATCATG 58.994 50.000 0.00 0.00 0.00 3.07
1789 2037 2.012673 GACCTGACCTCAACATCATGC 58.987 52.381 0.00 0.00 0.00 4.06
1790 2038 1.352017 ACCTGACCTCAACATCATGCA 59.648 47.619 0.00 0.00 0.00 3.96
1791 2039 2.025605 ACCTGACCTCAACATCATGCAT 60.026 45.455 0.00 0.00 0.00 3.96
1792 2040 2.357952 CCTGACCTCAACATCATGCATG 59.642 50.000 21.07 21.07 38.64 4.06
1814 2062 4.021456 TGCATCACCTCGTCTTCTTCTTAA 60.021 41.667 0.00 0.00 0.00 1.85
1815 2063 5.112686 GCATCACCTCGTCTTCTTCTTAAT 58.887 41.667 0.00 0.00 0.00 1.40
1817 2065 6.757010 GCATCACCTCGTCTTCTTCTTAATTA 59.243 38.462 0.00 0.00 0.00 1.40
1818 2066 7.254151 GCATCACCTCGTCTTCTTCTTAATTAC 60.254 40.741 0.00 0.00 0.00 1.89
1819 2067 7.463961 TCACCTCGTCTTCTTCTTAATTACT 57.536 36.000 0.00 0.00 0.00 2.24
1820 2068 7.536855 TCACCTCGTCTTCTTCTTAATTACTC 58.463 38.462 0.00 0.00 0.00 2.59
1821 2069 6.752815 CACCTCGTCTTCTTCTTAATTACTCC 59.247 42.308 0.00 0.00 0.00 3.85
1822 2070 6.127394 ACCTCGTCTTCTTCTTAATTACTCCC 60.127 42.308 0.00 0.00 0.00 4.30
1823 2071 6.097129 CCTCGTCTTCTTCTTAATTACTCCCT 59.903 42.308 0.00 0.00 0.00 4.20
1824 2072 7.098074 TCGTCTTCTTCTTAATTACTCCCTC 57.902 40.000 0.00 0.00 0.00 4.30
1825 2073 6.890814 TCGTCTTCTTCTTAATTACTCCCTCT 59.109 38.462 0.00 0.00 0.00 3.69
1826 2074 6.975772 CGTCTTCTTCTTAATTACTCCCTCTG 59.024 42.308 0.00 0.00 0.00 3.35
1827 2075 7.269316 GTCTTCTTCTTAATTACTCCCTCTGG 58.731 42.308 0.00 0.00 0.00 3.86
1828 2076 6.960542 TCTTCTTCTTAATTACTCCCTCTGGT 59.039 38.462 0.00 0.00 0.00 4.00
1829 2077 7.458170 TCTTCTTCTTAATTACTCCCTCTGGTT 59.542 37.037 0.00 0.00 0.00 3.67
1830 2078 7.184067 TCTTCTTAATTACTCCCTCTGGTTC 57.816 40.000 0.00 0.00 0.00 3.62
1831 2079 5.952347 TCTTAATTACTCCCTCTGGTTCC 57.048 43.478 0.00 0.00 0.00 3.62
1832 2080 4.720273 TCTTAATTACTCCCTCTGGTTCCC 59.280 45.833 0.00 0.00 0.00 3.97
1833 2081 1.894699 ATTACTCCCTCTGGTTCCCC 58.105 55.000 0.00 0.00 0.00 4.81
1834 2082 0.253020 TTACTCCCTCTGGTTCCCCC 60.253 60.000 0.00 0.00 0.00 5.40
1835 2083 1.457380 TACTCCCTCTGGTTCCCCCA 61.457 60.000 0.00 0.00 42.51 4.96
1842 2090 3.172106 TGGTTCCCCCAGCGACAA 61.172 61.111 0.00 0.00 38.72 3.18
1843 2091 2.359975 GGTTCCCCCAGCGACAAG 60.360 66.667 0.00 0.00 0.00 3.16
1844 2092 2.430367 GTTCCCCCAGCGACAAGT 59.570 61.111 0.00 0.00 0.00 3.16
1845 2093 1.675219 GTTCCCCCAGCGACAAGTA 59.325 57.895 0.00 0.00 0.00 2.24
1846 2094 0.252197 GTTCCCCCAGCGACAAGTAT 59.748 55.000 0.00 0.00 0.00 2.12
1847 2095 0.988832 TTCCCCCAGCGACAAGTATT 59.011 50.000 0.00 0.00 0.00 1.89
1860 2108 2.086869 CAAGTATTGTGGTGCAGAGGG 58.913 52.381 0.00 0.00 42.34 4.30
1861 2109 1.656587 AGTATTGTGGTGCAGAGGGA 58.343 50.000 0.00 0.00 0.00 4.20
1862 2110 1.556911 AGTATTGTGGTGCAGAGGGAG 59.443 52.381 0.00 0.00 0.00 4.30
1863 2111 1.279271 GTATTGTGGTGCAGAGGGAGT 59.721 52.381 0.00 0.00 0.00 3.85
1864 2112 1.656587 ATTGTGGTGCAGAGGGAGTA 58.343 50.000 0.00 0.00 0.00 2.59
1881 2129 9.608718 AGAGGGAGTAGTTAAATATATCAGCTT 57.391 33.333 0.00 0.00 0.00 3.74
1900 2148 7.265673 TCAGCTTCCACATTATTAGTACTGAC 58.734 38.462 5.39 0.00 0.00 3.51
1986 2234 4.142609 TGAAGAGCTCAACAAGACAGTT 57.857 40.909 17.77 0.00 0.00 3.16
2002 2250 8.807118 ACAAGACAGTTGATTCACTCTATTAGA 58.193 33.333 0.00 0.00 0.00 2.10
2003 2251 9.081997 CAAGACAGTTGATTCACTCTATTAGAC 57.918 37.037 0.00 0.00 0.00 2.59
2004 2252 7.476667 AGACAGTTGATTCACTCTATTAGACG 58.523 38.462 0.00 0.00 0.00 4.18
2005 2253 7.121463 AGACAGTTGATTCACTCTATTAGACGT 59.879 37.037 0.00 0.00 0.00 4.34
2007 2255 8.737175 ACAGTTGATTCACTCTATTAGACGTAA 58.263 33.333 0.00 0.00 0.00 3.18
2008 2256 9.737427 CAGTTGATTCACTCTATTAGACGTAAT 57.263 33.333 0.00 0.00 33.25 1.89
2009 2257 9.737427 AGTTGATTCACTCTATTAGACGTAATG 57.263 33.333 0.00 0.00 31.04 1.90
2015 2263 8.913487 TCACTCTATTAGACGTAATGATACCA 57.087 34.615 0.00 0.00 31.04 3.25
2016 2264 9.000486 TCACTCTATTAGACGTAATGATACCAG 58.000 37.037 0.00 0.00 31.04 4.00
2017 2265 7.751348 CACTCTATTAGACGTAATGATACCAGC 59.249 40.741 0.00 0.00 31.04 4.85
2018 2266 7.666388 ACTCTATTAGACGTAATGATACCAGCT 59.334 37.037 0.00 0.00 31.04 4.24
2038 2286 5.891551 CAGCTTAATGTTAATTACCACCCCT 59.108 40.000 0.00 0.00 0.00 4.79
2054 2302 2.838202 ACCCCTGAGAGCTTAATTTCGA 59.162 45.455 0.00 0.00 0.00 3.71
2071 2319 0.460109 CGATGTGCAATCTCCGTCCA 60.460 55.000 0.00 0.00 0.00 4.02
2079 2327 1.417517 CAATCTCCGTCCATCCCATGA 59.582 52.381 0.00 0.00 0.00 3.07
2085 2333 2.025416 TCCGTCCATCCCATGAATTTGT 60.025 45.455 0.00 0.00 0.00 2.83
2086 2334 2.099592 CCGTCCATCCCATGAATTTGTG 59.900 50.000 0.00 0.00 0.00 3.33
2087 2335 2.099592 CGTCCATCCCATGAATTTGTGG 59.900 50.000 0.00 3.68 35.22 4.17
2088 2336 2.109774 TCCATCCCATGAATTTGTGGC 58.890 47.619 0.00 0.00 34.08 5.01
2089 2337 1.832366 CCATCCCATGAATTTGTGGCA 59.168 47.619 0.00 0.00 34.08 4.92
2090 2338 2.436542 CCATCCCATGAATTTGTGGCAT 59.563 45.455 0.00 0.00 34.08 4.40
2091 2339 3.462982 CATCCCATGAATTTGTGGCATG 58.537 45.455 0.00 0.00 39.20 4.06
2092 2340 2.538222 TCCCATGAATTTGTGGCATGT 58.462 42.857 0.00 0.00 38.12 3.21
2093 2341 2.496871 TCCCATGAATTTGTGGCATGTC 59.503 45.455 0.00 0.00 38.12 3.06
2094 2342 2.419021 CCCATGAATTTGTGGCATGTCC 60.419 50.000 0.00 0.00 38.12 4.02
2095 2343 2.498481 CCATGAATTTGTGGCATGTCCT 59.502 45.455 0.00 0.00 38.12 3.85
2096 2344 3.055675 CCATGAATTTGTGGCATGTCCTT 60.056 43.478 0.00 0.00 38.12 3.36
2097 2345 3.663995 TGAATTTGTGGCATGTCCTTG 57.336 42.857 0.00 0.00 35.26 3.61
2098 2346 2.964464 TGAATTTGTGGCATGTCCTTGT 59.036 40.909 0.00 0.00 35.26 3.16
2099 2347 3.387374 TGAATTTGTGGCATGTCCTTGTT 59.613 39.130 0.00 0.00 35.26 2.83
2100 2348 2.886862 TTTGTGGCATGTCCTTGTTG 57.113 45.000 0.00 0.00 35.26 3.33
2101 2349 0.388659 TTGTGGCATGTCCTTGTTGC 59.611 50.000 0.00 0.00 35.26 4.17
2120 2368 3.123050 TGCATGTATGTGATCTGTACGC 58.877 45.455 0.00 0.00 0.00 4.42
2152 2400 1.745264 TCACACCATGTCGTGAGCA 59.255 52.632 9.69 0.00 37.23 4.26
2204 2452 2.542020 TGCTTCCTTGTGATTGACGA 57.458 45.000 0.00 0.00 0.00 4.20
2205 2453 2.143122 TGCTTCCTTGTGATTGACGAC 58.857 47.619 0.00 0.00 0.00 4.34
2206 2454 1.464997 GCTTCCTTGTGATTGACGACC 59.535 52.381 0.00 0.00 0.00 4.79
2207 2455 1.726791 CTTCCTTGTGATTGACGACCG 59.273 52.381 0.00 0.00 0.00 4.79
2208 2456 0.037697 TCCTTGTGATTGACGACCGG 60.038 55.000 0.00 0.00 0.00 5.28
2212 2460 0.107081 TGTGATTGACGACCGGGTTT 59.893 50.000 6.32 0.00 0.00 3.27
2213 2461 0.515564 GTGATTGACGACCGGGTTTG 59.484 55.000 6.32 0.00 0.00 2.93
2214 2462 0.393448 TGATTGACGACCGGGTTTGA 59.607 50.000 6.32 0.00 0.00 2.69
2215 2463 1.076332 GATTGACGACCGGGTTTGAG 58.924 55.000 6.32 0.00 0.00 3.02
2216 2464 0.395312 ATTGACGACCGGGTTTGAGT 59.605 50.000 6.32 0.00 0.00 3.41
2218 2466 1.373873 GACGACCGGGTTTGAGTCC 60.374 63.158 6.32 0.00 0.00 3.85
2219 2467 2.091102 GACGACCGGGTTTGAGTCCA 62.091 60.000 6.32 0.00 0.00 4.02
2220 2468 1.295423 CGACCGGGTTTGAGTCCAT 59.705 57.895 6.32 0.00 0.00 3.41
2221 2469 0.739813 CGACCGGGTTTGAGTCCATC 60.740 60.000 6.32 0.00 0.00 3.51
2288 2536 0.771755 AGGGACCAAGGAACAAGACC 59.228 55.000 0.00 0.00 0.00 3.85
2297 2546 4.351192 CAAGGAACAAGACCGACAAAAAG 58.649 43.478 0.00 0.00 0.00 2.27
2334 2583 2.540769 GGAATTGGTGTCGTGTGTGTTG 60.541 50.000 0.00 0.00 0.00 3.33
2346 2595 4.813697 TCGTGTGTGTTGATTCATTCTTGA 59.186 37.500 0.00 0.00 0.00 3.02
2358 2607 7.317390 TGATTCATTCTTGACCAATGTTGATG 58.683 34.615 0.00 0.00 33.61 3.07
2416 2669 2.889170 ATATCGCTAGAGAGAGGCCA 57.111 50.000 5.01 0.00 0.00 5.36
2505 2761 1.806542 TGCTCTTGCAGTTTCCGATTC 59.193 47.619 0.00 0.00 45.31 2.52
2513 2769 2.412847 GCAGTTTCCGATTCGAAAGGTG 60.413 50.000 18.61 12.44 32.52 4.00
2519 2775 1.002366 CGATTCGAAAGGTGAGCAGG 58.998 55.000 0.00 0.00 0.00 4.85
2535 2791 0.244721 CAGGTCAGCACTGTCGATCA 59.755 55.000 0.00 0.00 0.00 2.92
2536 2792 0.244994 AGGTCAGCACTGTCGATCAC 59.755 55.000 0.00 0.00 0.00 3.06
2537 2793 0.038251 GGTCAGCACTGTCGATCACA 60.038 55.000 0.00 0.00 0.00 3.58
2539 2795 0.038251 TCAGCACTGTCGATCACACC 60.038 55.000 0.00 0.00 0.00 4.16
2541 2797 0.610174 AGCACTGTCGATCACACCAT 59.390 50.000 0.00 0.00 0.00 3.55
2542 2798 0.723414 GCACTGTCGATCACACCATG 59.277 55.000 0.00 0.00 0.00 3.66
2543 2799 1.672737 GCACTGTCGATCACACCATGA 60.673 52.381 0.00 0.00 43.13 3.07
2544 2800 2.265683 CACTGTCGATCACACCATGAG 58.734 52.381 0.00 0.00 41.91 2.90
2546 2802 2.562738 ACTGTCGATCACACCATGAGAA 59.437 45.455 0.00 0.00 41.91 2.87
2547 2803 3.196469 ACTGTCGATCACACCATGAGAAT 59.804 43.478 0.00 0.00 41.91 2.40
2548 2804 4.186926 CTGTCGATCACACCATGAGAATT 58.813 43.478 0.00 0.00 41.91 2.17
2550 2806 4.183865 GTCGATCACACCATGAGAATTGA 58.816 43.478 0.00 0.00 41.91 2.57
2551 2807 4.269603 GTCGATCACACCATGAGAATTGAG 59.730 45.833 0.00 0.00 41.91 3.02
2552 2808 4.160252 TCGATCACACCATGAGAATTGAGA 59.840 41.667 0.00 0.00 41.91 3.27
2553 2809 4.872124 CGATCACACCATGAGAATTGAGAA 59.128 41.667 0.00 0.00 41.91 2.87
2554 2810 5.220548 CGATCACACCATGAGAATTGAGAAC 60.221 44.000 0.00 0.00 41.91 3.01
2555 2811 4.326826 TCACACCATGAGAATTGAGAACC 58.673 43.478 0.00 0.00 31.91 3.62
2556 2812 3.125829 CACACCATGAGAATTGAGAACCG 59.874 47.826 0.00 0.00 0.00 4.44
2557 2813 3.007940 ACACCATGAGAATTGAGAACCGA 59.992 43.478 0.00 0.00 0.00 4.69
2558 2814 4.194640 CACCATGAGAATTGAGAACCGAT 58.805 43.478 0.00 0.00 0.00 4.18
2559 2815 4.272018 CACCATGAGAATTGAGAACCGATC 59.728 45.833 0.00 0.00 0.00 3.69
2571 2827 0.107508 AACCGATCATCCTGCTGGTG 60.108 55.000 9.73 7.57 34.23 4.17
2617 2873 1.377333 GAACTGGTGGGTGGCTAGC 60.377 63.158 6.04 6.04 0.00 3.42
2619 2875 4.473520 CTGGTGGGTGGCTAGCGG 62.474 72.222 9.00 0.00 0.00 5.52
2623 2879 2.038329 TGGGTGGCTAGCGGTAGT 59.962 61.111 21.77 0.00 0.00 2.73
2638 2895 1.686115 GGTAGTGGCTACTAACCGGGA 60.686 57.143 14.04 0.00 40.52 5.14
2714 2971 6.381133 ACATTTAATTAAGCTCCAGGAAAGGG 59.619 38.462 0.00 0.00 0.00 3.95
2777 3123 1.268283 GGCTAGCTGGTCCCTGAGTT 61.268 60.000 15.72 0.00 0.00 3.01
2778 3124 1.486211 GCTAGCTGGTCCCTGAGTTA 58.514 55.000 7.70 0.00 0.00 2.24
2779 3125 1.410882 GCTAGCTGGTCCCTGAGTTAG 59.589 57.143 7.70 0.00 0.00 2.34
2780 3126 1.410882 CTAGCTGGTCCCTGAGTTAGC 59.589 57.143 0.00 0.00 0.00 3.09
2781 3127 0.252467 AGCTGGTCCCTGAGTTAGCT 60.252 55.000 0.00 0.00 36.74 3.32
2838 3191 9.930693 CATGATGCTGATACATATAGATATGCT 57.069 33.333 9.05 0.00 42.98 3.79
2839 3192 9.930693 ATGATGCTGATACATATAGATATGCTG 57.069 33.333 9.05 0.70 42.98 4.41
2844 3197 7.802720 GCTGATACATATAGATATGCTGTCGAG 59.197 40.741 9.05 6.82 42.98 4.04
2985 3347 4.326826 CCAGCTGGTATGGTATGTTATGG 58.673 47.826 25.53 0.00 32.85 2.74
2986 3348 4.202461 CCAGCTGGTATGGTATGTTATGGT 60.202 45.833 25.53 0.00 32.85 3.55
2987 3349 5.012664 CCAGCTGGTATGGTATGTTATGGTA 59.987 44.000 25.53 0.00 32.85 3.25
2988 3350 6.296432 CCAGCTGGTATGGTATGTTATGGTAT 60.296 42.308 25.53 0.00 32.85 2.73
2989 3351 6.595326 CAGCTGGTATGGTATGTTATGGTATG 59.405 42.308 5.57 0.00 0.00 2.39
2990 3352 5.880332 GCTGGTATGGTATGTTATGGTATGG 59.120 44.000 0.00 0.00 0.00 2.74
2991 3353 6.521770 GCTGGTATGGTATGTTATGGTATGGT 60.522 42.308 0.00 0.00 0.00 3.55
2992 3354 6.774673 TGGTATGGTATGTTATGGTATGGTG 58.225 40.000 0.00 0.00 0.00 4.17
2993 3355 5.646360 GGTATGGTATGTTATGGTATGGTGC 59.354 44.000 0.00 0.00 0.00 5.01
2994 3356 4.093472 TGGTATGTTATGGTATGGTGCC 57.907 45.455 0.00 0.00 0.00 5.01
2995 3357 3.459969 TGGTATGTTATGGTATGGTGCCA 59.540 43.478 0.00 0.00 40.68 4.92
2997 3359 5.076873 GGTATGTTATGGTATGGTGCCATT 58.923 41.667 9.19 0.00 43.65 3.16
2998 3360 6.183361 TGGTATGTTATGGTATGGTGCCATTA 60.183 38.462 9.19 0.00 43.65 1.90
2999 3361 6.150474 GGTATGTTATGGTATGGTGCCATTAC 59.850 42.308 9.19 7.00 43.65 1.89
3000 3362 5.117406 TGTTATGGTATGGTGCCATTACA 57.883 39.130 9.19 12.63 46.89 2.41
3001 3363 5.700183 TGTTATGGTATGGTGCCATTACAT 58.300 37.500 9.19 14.77 45.35 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.475666 GCAGATGCTCTGGGACAAC 58.524 57.895 12.98 0.00 44.43 3.32
186 187 1.683917 CTGGGGAGTAGGAAGACGATG 59.316 57.143 0.00 0.00 0.00 3.84
217 222 4.926832 GCTAAGCTATAGTGCTAGAAAGGC 59.073 45.833 0.84 0.00 43.24 4.35
219 224 5.923684 GTGGCTAAGCTATAGTGCTAGAAAG 59.076 44.000 0.84 0.00 43.24 2.62
220 225 5.598830 AGTGGCTAAGCTATAGTGCTAGAAA 59.401 40.000 0.84 0.00 43.24 2.52
221 226 5.141182 AGTGGCTAAGCTATAGTGCTAGAA 58.859 41.667 0.84 0.00 43.24 2.10
222 227 4.730966 AGTGGCTAAGCTATAGTGCTAGA 58.269 43.478 0.84 0.00 43.24 2.43
226 231 3.735237 TGAGTGGCTAAGCTATAGTGC 57.265 47.619 0.84 1.67 0.00 4.40
228 233 4.956700 TGAGTTGAGTGGCTAAGCTATAGT 59.043 41.667 0.84 0.00 0.00 2.12
229 234 5.521906 TGAGTTGAGTGGCTAAGCTATAG 57.478 43.478 0.00 0.00 0.00 1.31
261 362 4.347453 CCACTTGCACTTGGGCGC 62.347 66.667 0.00 0.00 36.28 6.53
266 367 0.951558 GGTACCACCACTTGCACTTG 59.048 55.000 7.15 0.00 38.42 3.16
295 396 9.905171 GTGCATATCTTTCTTTCTTTCTTTCTT 57.095 29.630 0.00 0.00 0.00 2.52
296 397 9.071276 TGTGCATATCTTTCTTTCTTTCTTTCT 57.929 29.630 0.00 0.00 0.00 2.52
297 398 9.683069 TTGTGCATATCTTTCTTTCTTTCTTTC 57.317 29.630 0.00 0.00 0.00 2.62
298 399 9.688592 CTTGTGCATATCTTTCTTTCTTTCTTT 57.311 29.630 0.00 0.00 0.00 2.52
299 400 8.302438 CCTTGTGCATATCTTTCTTTCTTTCTT 58.698 33.333 0.00 0.00 0.00 2.52
300 401 7.667219 TCCTTGTGCATATCTTTCTTTCTTTCT 59.333 33.333 0.00 0.00 0.00 2.52
301 402 7.820648 TCCTTGTGCATATCTTTCTTTCTTTC 58.179 34.615 0.00 0.00 0.00 2.62
302 403 7.667219 TCTCCTTGTGCATATCTTTCTTTCTTT 59.333 33.333 0.00 0.00 0.00 2.52
315 416 2.785540 TGCATGTCTCCTTGTGCATA 57.214 45.000 0.00 0.00 42.13 3.14
318 419 0.179145 GCATGCATGTCTCCTTGTGC 60.179 55.000 26.79 7.20 38.05 4.57
349 450 1.201429 AGTGCGGGGGAAGTGATTCT 61.201 55.000 0.00 0.00 0.00 2.40
375 476 1.670949 ATCGGACTGTGCAGCTCGAT 61.671 55.000 17.79 17.79 39.89 3.59
376 477 2.271607 GATCGGACTGTGCAGCTCGA 62.272 60.000 15.60 15.60 39.26 4.04
377 478 1.875813 GATCGGACTGTGCAGCTCG 60.876 63.158 0.00 4.11 0.00 5.03
378 479 1.520342 GGATCGGACTGTGCAGCTC 60.520 63.158 0.00 0.00 0.00 4.09
413 514 3.057456 TGCAAGTAACTCTTCCTCTCGAC 60.057 47.826 0.00 0.00 33.63 4.20
414 515 3.057456 GTGCAAGTAACTCTTCCTCTCGA 60.057 47.826 0.00 0.00 33.63 4.04
415 516 3.057174 AGTGCAAGTAACTCTTCCTCTCG 60.057 47.826 0.00 0.00 33.63 4.04
416 517 4.490743 GAGTGCAAGTAACTCTTCCTCTC 58.509 47.826 0.00 0.00 40.77 3.20
629 758 3.420893 TCAAATCAAAGGACGGAAGCAT 58.579 40.909 0.00 0.00 0.00 3.79
630 759 2.857483 TCAAATCAAAGGACGGAAGCA 58.143 42.857 0.00 0.00 0.00 3.91
631 760 3.915437 TTCAAATCAAAGGACGGAAGC 57.085 42.857 0.00 0.00 0.00 3.86
632 761 5.393962 GTGATTCAAATCAAAGGACGGAAG 58.606 41.667 6.99 0.00 46.13 3.46
653 782 2.577449 ACAAAACAAAAGCGGAGGTG 57.423 45.000 0.00 0.00 39.47 4.00
697 826 0.247497 CGCACAATGCAATGCAATGC 60.247 50.000 21.76 22.92 45.36 3.56
698 827 1.059979 GTCGCACAATGCAATGCAATG 59.940 47.619 20.44 20.44 45.36 2.82
699 828 1.352114 GTCGCACAATGCAATGCAAT 58.648 45.000 13.45 0.00 45.36 3.56
757 891 2.071688 AGTAATGCGATCGATCCTGC 57.928 50.000 21.57 17.45 0.00 4.85
876 1024 0.972983 TCTCTTCCTCTTGGCTCCCG 60.973 60.000 0.00 0.00 0.00 5.14
884 1032 4.581409 GGCGTAGTATTCTCTCTTCCTCTT 59.419 45.833 0.00 0.00 0.00 2.85
885 1033 4.139038 GGCGTAGTATTCTCTCTTCCTCT 58.861 47.826 0.00 0.00 0.00 3.69
888 1060 4.098196 AGTTGGCGTAGTATTCTCTCTTCC 59.902 45.833 0.00 0.00 0.00 3.46
922 1097 4.669728 CGTAACGTAATCAATCGACTCCTC 59.330 45.833 0.00 0.00 0.00 3.71
924 1099 4.203764 CACGTAACGTAATCAATCGACTCC 59.796 45.833 0.00 0.00 38.32 3.85
955 1130 3.521529 GATGGATCGGCACCCCTCG 62.522 68.421 0.00 0.00 0.00 4.63
956 1131 2.427753 GATGGATCGGCACCCCTC 59.572 66.667 0.00 0.00 0.00 4.30
957 1132 3.171388 GGATGGATCGGCACCCCT 61.171 66.667 0.00 0.00 0.00 4.79
958 1133 2.754664 GATGGATGGATCGGCACCCC 62.755 65.000 0.00 0.00 0.00 4.95
959 1134 1.302832 GATGGATGGATCGGCACCC 60.303 63.158 0.00 0.00 0.00 4.61
960 1135 1.302832 GGATGGATGGATCGGCACC 60.303 63.158 0.00 0.00 0.00 5.01
961 1136 0.037303 ATGGATGGATGGATCGGCAC 59.963 55.000 0.00 0.00 0.00 5.01
962 1137 1.278985 GTATGGATGGATGGATCGGCA 59.721 52.381 0.00 0.00 0.00 5.69
963 1138 1.407437 GGTATGGATGGATGGATCGGC 60.407 57.143 0.00 0.00 0.00 5.54
964 1139 2.191400 AGGTATGGATGGATGGATCGG 58.809 52.381 0.00 0.00 0.00 4.18
965 1140 3.386078 CCTAGGTATGGATGGATGGATCG 59.614 52.174 0.00 0.00 0.00 3.69
966 1141 4.624913 TCCTAGGTATGGATGGATGGATC 58.375 47.826 9.08 0.00 0.00 3.36
967 1142 4.717328 TCCTAGGTATGGATGGATGGAT 57.283 45.455 9.08 0.00 0.00 3.41
970 1145 4.429505 TCCTTCCTAGGTATGGATGGATG 58.570 47.826 9.08 0.00 46.46 3.51
974 1149 4.493618 TCCTTCCTTCCTAGGTATGGATG 58.506 47.826 9.08 14.96 42.60 3.51
982 1157 2.105649 GCATCCTTCCTTCCTTCCTAGG 59.894 54.545 0.82 0.82 43.46 3.02
983 1158 2.774234 TGCATCCTTCCTTCCTTCCTAG 59.226 50.000 0.00 0.00 0.00 3.02
984 1159 2.774234 CTGCATCCTTCCTTCCTTCCTA 59.226 50.000 0.00 0.00 0.00 2.94
1125 1326 0.895559 CCTCCTTGGCCTTGAACACC 60.896 60.000 3.32 0.00 0.00 4.16
1246 1447 9.460019 AGTATTACTAACCGAAGAAGAGTAGTT 57.540 33.333 0.00 0.00 0.00 2.24
1253 1479 8.288913 GGCTAGTAGTATTACTAACCGAAGAAG 58.711 40.741 8.59 0.00 40.82 2.85
1254 1480 7.775093 TGGCTAGTAGTATTACTAACCGAAGAA 59.225 37.037 15.99 1.04 45.52 2.52
1266 1492 9.911788 ACTACTTACACTTGGCTAGTAGTATTA 57.088 33.333 10.53 2.45 45.72 0.98
1269 1495 8.543774 AGTACTACTTACACTTGGCTAGTAGTA 58.456 37.037 13.51 13.51 45.72 1.82
1271 1497 7.862512 AGTACTACTTACACTTGGCTAGTAG 57.137 40.000 0.24 0.00 42.39 2.57
1272 1498 9.167311 GTTAGTACTACTTACACTTGGCTAGTA 57.833 37.037 0.91 0.00 34.56 1.82
1274 1500 7.185453 CGTTAGTACTACTTACACTTGGCTAG 58.815 42.308 0.91 0.00 32.41 3.42
1275 1501 6.094048 CCGTTAGTACTACTTACACTTGGCTA 59.906 42.308 0.91 0.00 32.41 3.93
1276 1502 5.105997 CCGTTAGTACTACTTACACTTGGCT 60.106 44.000 0.91 0.00 32.41 4.75
1277 1503 5.098211 CCGTTAGTACTACTTACACTTGGC 58.902 45.833 0.91 0.00 32.41 4.52
1278 1504 5.098211 GCCGTTAGTACTACTTACACTTGG 58.902 45.833 0.91 0.00 32.41 3.61
1279 1505 5.098211 GGCCGTTAGTACTACTTACACTTG 58.902 45.833 0.91 0.00 32.41 3.16
1280 1506 4.142600 CGGCCGTTAGTACTACTTACACTT 60.143 45.833 19.50 0.00 32.41 3.16
1281 1507 3.375299 CGGCCGTTAGTACTACTTACACT 59.625 47.826 19.50 0.00 32.41 3.55
1282 1508 3.374058 TCGGCCGTTAGTACTACTTACAC 59.626 47.826 27.15 0.00 32.41 2.90
1283 1509 3.605634 TCGGCCGTTAGTACTACTTACA 58.394 45.455 27.15 0.00 32.41 2.41
1284 1510 4.609336 CGATCGGCCGTTAGTACTACTTAC 60.609 50.000 27.15 0.00 0.00 2.34
1285 1511 3.494626 CGATCGGCCGTTAGTACTACTTA 59.505 47.826 27.15 0.00 0.00 2.24
1286 1512 2.289002 CGATCGGCCGTTAGTACTACTT 59.711 50.000 27.15 0.00 0.00 2.24
1287 1513 1.869767 CGATCGGCCGTTAGTACTACT 59.130 52.381 27.15 0.00 0.00 2.57
1288 1514 1.661460 GCGATCGGCCGTTAGTACTAC 60.661 57.143 27.15 1.67 34.80 2.73
1289 1515 0.588252 GCGATCGGCCGTTAGTACTA 59.412 55.000 27.15 2.48 34.80 1.82
1290 1516 1.099879 AGCGATCGGCCGTTAGTACT 61.100 55.000 27.15 13.31 45.17 2.73
1291 1517 0.248784 AAGCGATCGGCCGTTAGTAC 60.249 55.000 27.15 11.13 45.17 2.73
1292 1518 0.029834 GAAGCGATCGGCCGTTAGTA 59.970 55.000 27.15 5.24 45.17 1.82
1293 1519 1.226888 GAAGCGATCGGCCGTTAGT 60.227 57.895 27.15 10.02 45.17 2.24
1294 1520 0.597637 ATGAAGCGATCGGCCGTTAG 60.598 55.000 27.15 18.56 45.17 2.34
1295 1521 0.874175 CATGAAGCGATCGGCCGTTA 60.874 55.000 27.15 7.11 45.17 3.18
1296 1522 2.173669 CATGAAGCGATCGGCCGTT 61.174 57.895 27.15 18.42 45.17 4.44
1297 1523 2.586079 CATGAAGCGATCGGCCGT 60.586 61.111 27.15 12.96 45.17 5.68
1298 1524 3.341043 CCATGAAGCGATCGGCCG 61.341 66.667 22.12 22.12 45.17 6.13
1299 1525 3.654020 GCCATGAAGCGATCGGCC 61.654 66.667 18.30 0.22 45.17 6.13
1300 1526 1.789078 AATGCCATGAAGCGATCGGC 61.789 55.000 18.30 10.20 43.28 5.54
1301 1527 1.511850 TAATGCCATGAAGCGATCGG 58.488 50.000 18.30 0.00 34.65 4.18
1302 1528 2.545526 AGTTAATGCCATGAAGCGATCG 59.454 45.455 11.69 11.69 34.65 3.69
1303 1529 4.153117 CCTAGTTAATGCCATGAAGCGATC 59.847 45.833 0.00 0.00 34.65 3.69
1304 1530 4.067896 CCTAGTTAATGCCATGAAGCGAT 58.932 43.478 0.00 0.00 34.65 4.58
1305 1531 3.133901 TCCTAGTTAATGCCATGAAGCGA 59.866 43.478 0.00 0.00 34.65 4.93
1306 1532 3.466836 TCCTAGTTAATGCCATGAAGCG 58.533 45.455 0.00 0.00 34.65 4.68
1307 1533 4.513318 GTCTCCTAGTTAATGCCATGAAGC 59.487 45.833 0.00 0.00 0.00 3.86
1308 1534 5.059833 GGTCTCCTAGTTAATGCCATGAAG 58.940 45.833 0.00 0.00 0.00 3.02
1309 1535 4.141482 GGGTCTCCTAGTTAATGCCATGAA 60.141 45.833 0.00 0.00 0.00 2.57
1310 1536 3.391296 GGGTCTCCTAGTTAATGCCATGA 59.609 47.826 0.00 0.00 0.00 3.07
1311 1537 3.136443 TGGGTCTCCTAGTTAATGCCATG 59.864 47.826 0.00 0.00 0.00 3.66
1312 1538 3.393687 TGGGTCTCCTAGTTAATGCCAT 58.606 45.455 0.00 0.00 0.00 4.40
1313 1539 2.840511 TGGGTCTCCTAGTTAATGCCA 58.159 47.619 0.00 0.00 0.00 4.92
1314 1540 3.926058 TTGGGTCTCCTAGTTAATGCC 57.074 47.619 0.00 0.00 0.00 4.40
1315 1541 5.885912 TCATTTTGGGTCTCCTAGTTAATGC 59.114 40.000 0.00 0.00 0.00 3.56
1316 1542 6.037172 CGTCATTTTGGGTCTCCTAGTTAATG 59.963 42.308 0.00 0.00 0.00 1.90
1317 1543 6.113411 CGTCATTTTGGGTCTCCTAGTTAAT 58.887 40.000 0.00 0.00 0.00 1.40
1318 1544 5.012354 ACGTCATTTTGGGTCTCCTAGTTAA 59.988 40.000 0.00 0.00 0.00 2.01
1319 1545 4.529377 ACGTCATTTTGGGTCTCCTAGTTA 59.471 41.667 0.00 0.00 0.00 2.24
1320 1546 3.326880 ACGTCATTTTGGGTCTCCTAGTT 59.673 43.478 0.00 0.00 0.00 2.24
1321 1547 2.904434 ACGTCATTTTGGGTCTCCTAGT 59.096 45.455 0.00 0.00 0.00 2.57
1322 1548 3.611766 ACGTCATTTTGGGTCTCCTAG 57.388 47.619 0.00 0.00 0.00 3.02
1323 1549 5.895534 AGTATACGTCATTTTGGGTCTCCTA 59.104 40.000 0.00 0.00 0.00 2.94
1324 1550 4.715297 AGTATACGTCATTTTGGGTCTCCT 59.285 41.667 0.00 0.00 0.00 3.69
1344 1570 6.378848 TCATGCATGTTGGTACTGTACTAGTA 59.621 38.462 25.43 0.00 40.89 1.82
1345 1571 5.186992 TCATGCATGTTGGTACTGTACTAGT 59.813 40.000 25.43 0.00 43.56 2.57
1348 1574 4.551702 TCATGCATGTTGGTACTGTACT 57.448 40.909 25.43 0.00 0.00 2.73
1349 1575 4.875536 TGATCATGCATGTTGGTACTGTAC 59.124 41.667 25.43 9.46 0.00 2.90
1350 1576 5.096443 TGATCATGCATGTTGGTACTGTA 57.904 39.130 25.43 3.20 0.00 2.74
1351 1577 3.943381 CTGATCATGCATGTTGGTACTGT 59.057 43.478 25.43 2.92 0.00 3.55
1352 1578 3.943381 ACTGATCATGCATGTTGGTACTG 59.057 43.478 25.43 15.73 0.00 2.74
1353 1579 4.226427 ACTGATCATGCATGTTGGTACT 57.774 40.909 25.43 3.95 0.00 2.73
1354 1580 4.970662 AACTGATCATGCATGTTGGTAC 57.029 40.909 25.43 12.02 0.00 3.34
1355 1581 4.766373 ACAAACTGATCATGCATGTTGGTA 59.234 37.500 25.43 7.04 0.00 3.25
1356 1582 3.575256 ACAAACTGATCATGCATGTTGGT 59.425 39.130 25.43 13.08 0.00 3.67
1357 1583 4.182693 ACAAACTGATCATGCATGTTGG 57.817 40.909 25.43 12.45 0.00 3.77
1358 1584 5.224135 TGAACAAACTGATCATGCATGTTG 58.776 37.500 25.43 21.53 30.37 3.33
1359 1585 5.456548 TGAACAAACTGATCATGCATGTT 57.543 34.783 25.43 18.03 32.68 2.71
1360 1586 4.617530 GCTGAACAAACTGATCATGCATGT 60.618 41.667 25.43 13.42 28.76 3.21
1361 1587 3.857665 GCTGAACAAACTGATCATGCATG 59.142 43.478 21.07 21.07 28.76 4.06
1362 1588 3.119245 GGCTGAACAAACTGATCATGCAT 60.119 43.478 0.00 0.00 30.87 3.96
1365 1591 2.821378 TGGGCTGAACAAACTGATCATG 59.179 45.455 0.00 0.00 28.76 3.07
1367 1593 2.158623 ACTGGGCTGAACAAACTGATCA 60.159 45.455 0.00 0.00 0.00 2.92
1385 1611 4.159879 ACAGAGTTATTAGTTCCCCGACTG 59.840 45.833 0.00 0.00 0.00 3.51
1386 1612 4.351127 ACAGAGTTATTAGTTCCCCGACT 58.649 43.478 0.00 0.00 0.00 4.18
1387 1613 4.732672 ACAGAGTTATTAGTTCCCCGAC 57.267 45.455 0.00 0.00 0.00 4.79
1388 1614 5.716228 TGTTACAGAGTTATTAGTTCCCCGA 59.284 40.000 0.00 0.00 0.00 5.14
1390 1616 7.618137 TCTTGTTACAGAGTTATTAGTTCCCC 58.382 38.462 0.00 0.00 0.00 4.81
1391 1617 9.498176 TTTCTTGTTACAGAGTTATTAGTTCCC 57.502 33.333 0.00 0.00 0.00 3.97
1425 1651 7.484035 ACAAACACAAAACAAAACAAAGCTA 57.516 28.000 0.00 0.00 0.00 3.32
1426 1652 6.370433 ACAAACACAAAACAAAACAAAGCT 57.630 29.167 0.00 0.00 0.00 3.74
1428 1654 9.283420 AGAAAACAAACACAAAACAAAACAAAG 57.717 25.926 0.00 0.00 0.00 2.77
1435 1661 9.796120 CTCCTATAGAAAACAAACACAAAACAA 57.204 29.630 0.00 0.00 0.00 2.83
1436 1662 7.918562 GCTCCTATAGAAAACAAACACAAAACA 59.081 33.333 0.00 0.00 0.00 2.83
1437 1663 8.135529 AGCTCCTATAGAAAACAAACACAAAAC 58.864 33.333 0.00 0.00 0.00 2.43
1450 1689 4.280789 TCCCTTCCAGCTCCTATAGAAA 57.719 45.455 0.00 0.00 0.00 2.52
1453 1696 2.836981 CCATCCCTTCCAGCTCCTATAG 59.163 54.545 0.00 0.00 0.00 1.31
1455 1698 1.739750 CCATCCCTTCCAGCTCCTAT 58.260 55.000 0.00 0.00 0.00 2.57
1597 1840 6.981559 GCAGTGAAGGTAAGTAGAATTCCTAG 59.018 42.308 0.65 0.00 0.00 3.02
1598 1841 6.439375 TGCAGTGAAGGTAAGTAGAATTCCTA 59.561 38.462 0.65 0.00 0.00 2.94
1600 1843 5.488341 TGCAGTGAAGGTAAGTAGAATTCC 58.512 41.667 0.65 0.00 0.00 3.01
1601 1844 7.334421 TGAATGCAGTGAAGGTAAGTAGAATTC 59.666 37.037 0.00 0.00 0.00 2.17
1634 1879 9.113838 AGAACAATAGAATCCACATGTCAATAC 57.886 33.333 0.00 0.00 0.00 1.89
1651 1899 7.367285 TCGTTTTCCCAATTCAAGAACAATAG 58.633 34.615 0.00 0.00 0.00 1.73
1700 1948 2.039818 TGTACGCCTCGAGAATCTCT 57.960 50.000 15.71 0.00 0.00 3.10
1770 2018 1.352017 TGCATGATGTTGAGGTCAGGT 59.648 47.619 0.00 0.00 0.00 4.00
1771 2019 2.118313 TGCATGATGTTGAGGTCAGG 57.882 50.000 0.00 0.00 0.00 3.86
1772 2020 2.223502 GCATGCATGATGTTGAGGTCAG 60.224 50.000 30.64 0.00 34.14 3.51
1773 2021 1.746787 GCATGCATGATGTTGAGGTCA 59.253 47.619 30.64 0.00 34.14 4.02
1774 2022 1.746787 TGCATGCATGATGTTGAGGTC 59.253 47.619 30.64 8.66 34.14 3.85
1775 2023 1.842052 TGCATGCATGATGTTGAGGT 58.158 45.000 30.64 0.00 34.14 3.85
1776 2024 2.360801 TGATGCATGCATGATGTTGAGG 59.639 45.455 36.73 0.20 36.70 3.86
1777 2025 3.372060 GTGATGCATGCATGATGTTGAG 58.628 45.455 36.73 1.01 36.70 3.02
1778 2026 2.100087 GGTGATGCATGCATGATGTTGA 59.900 45.455 36.73 4.63 36.70 3.18
1779 2027 2.100749 AGGTGATGCATGCATGATGTTG 59.899 45.455 36.73 4.39 36.70 3.33
1780 2028 2.361119 GAGGTGATGCATGCATGATGTT 59.639 45.455 36.73 17.80 36.70 2.71
1781 2029 1.954382 GAGGTGATGCATGCATGATGT 59.046 47.619 36.73 19.64 36.70 3.06
1782 2030 1.069227 CGAGGTGATGCATGCATGATG 60.069 52.381 36.73 16.01 36.70 3.07
1783 2031 1.235724 CGAGGTGATGCATGCATGAT 58.764 50.000 36.73 15.61 36.70 2.45
1784 2032 0.107557 ACGAGGTGATGCATGCATGA 60.108 50.000 36.73 27.04 36.70 3.07
1785 2033 0.306840 GACGAGGTGATGCATGCATG 59.693 55.000 36.73 22.65 36.70 4.06
1786 2034 0.179702 AGACGAGGTGATGCATGCAT 59.820 50.000 32.66 32.66 39.69 3.96
1787 2035 0.036105 AAGACGAGGTGATGCATGCA 60.036 50.000 25.04 25.04 0.00 3.96
1788 2036 0.654683 GAAGACGAGGTGATGCATGC 59.345 55.000 11.82 11.82 0.00 4.06
1789 2037 2.306341 AGAAGACGAGGTGATGCATG 57.694 50.000 2.46 0.00 0.00 4.06
1790 2038 2.499289 AGAAGAAGACGAGGTGATGCAT 59.501 45.455 0.00 0.00 0.00 3.96
1791 2039 1.895798 AGAAGAAGACGAGGTGATGCA 59.104 47.619 0.00 0.00 0.00 3.96
1792 2040 2.663826 AGAAGAAGACGAGGTGATGC 57.336 50.000 0.00 0.00 0.00 3.91
1827 2075 0.252197 ATACTTGTCGCTGGGGGAAC 59.748 55.000 0.00 0.00 0.00 3.62
1828 2076 0.988832 AATACTTGTCGCTGGGGGAA 59.011 50.000 0.00 0.00 0.00 3.97
1829 2077 0.251916 CAATACTTGTCGCTGGGGGA 59.748 55.000 0.00 0.00 0.00 4.81
1830 2078 0.035439 ACAATACTTGTCGCTGGGGG 60.035 55.000 0.00 0.00 40.56 5.40
1831 2079 1.086696 CACAATACTTGTCGCTGGGG 58.913 55.000 0.00 0.00 43.23 4.96
1832 2080 1.086696 CCACAATACTTGTCGCTGGG 58.913 55.000 0.00 0.00 43.23 4.45
1833 2081 1.464608 CACCACAATACTTGTCGCTGG 59.535 52.381 0.00 0.00 43.23 4.85
1834 2082 1.135972 GCACCACAATACTTGTCGCTG 60.136 52.381 0.00 0.00 43.23 5.18
1835 2083 1.156736 GCACCACAATACTTGTCGCT 58.843 50.000 0.00 0.00 43.23 4.93
1836 2084 0.871722 TGCACCACAATACTTGTCGC 59.128 50.000 0.00 0.00 43.23 5.19
1837 2085 2.412870 TCTGCACCACAATACTTGTCG 58.587 47.619 0.00 0.00 43.23 4.35
1838 2086 2.744202 CCTCTGCACCACAATACTTGTC 59.256 50.000 0.00 0.00 43.23 3.18
1839 2087 2.553028 CCCTCTGCACCACAATACTTGT 60.553 50.000 0.00 0.00 46.75 3.16
1840 2088 2.086869 CCCTCTGCACCACAATACTTG 58.913 52.381 0.00 0.00 0.00 3.16
1841 2089 1.985159 TCCCTCTGCACCACAATACTT 59.015 47.619 0.00 0.00 0.00 2.24
1842 2090 1.556911 CTCCCTCTGCACCACAATACT 59.443 52.381 0.00 0.00 0.00 2.12
1843 2091 1.279271 ACTCCCTCTGCACCACAATAC 59.721 52.381 0.00 0.00 0.00 1.89
1844 2092 1.656587 ACTCCCTCTGCACCACAATA 58.343 50.000 0.00 0.00 0.00 1.90
1845 2093 1.556911 CTACTCCCTCTGCACCACAAT 59.443 52.381 0.00 0.00 0.00 2.71
1846 2094 0.976641 CTACTCCCTCTGCACCACAA 59.023 55.000 0.00 0.00 0.00 3.33
1847 2095 0.178932 ACTACTCCCTCTGCACCACA 60.179 55.000 0.00 0.00 0.00 4.17
1848 2096 0.977395 AACTACTCCCTCTGCACCAC 59.023 55.000 0.00 0.00 0.00 4.16
1849 2097 2.615986 TAACTACTCCCTCTGCACCA 57.384 50.000 0.00 0.00 0.00 4.17
1850 2098 3.975168 TTTAACTACTCCCTCTGCACC 57.025 47.619 0.00 0.00 0.00 5.01
1851 2099 8.585881 TGATATATTTAACTACTCCCTCTGCAC 58.414 37.037 0.00 0.00 0.00 4.57
1852 2100 8.721133 TGATATATTTAACTACTCCCTCTGCA 57.279 34.615 0.00 0.00 0.00 4.41
1853 2101 7.762159 GCTGATATATTTAACTACTCCCTCTGC 59.238 40.741 0.00 0.00 0.00 4.26
1854 2102 9.030452 AGCTGATATATTTAACTACTCCCTCTG 57.970 37.037 0.00 0.00 0.00 3.35
1855 2103 9.608718 AAGCTGATATATTTAACTACTCCCTCT 57.391 33.333 0.00 0.00 0.00 3.69
1856 2104 9.863845 GAAGCTGATATATTTAACTACTCCCTC 57.136 37.037 0.00 0.00 0.00 4.30
1857 2105 8.817876 GGAAGCTGATATATTTAACTACTCCCT 58.182 37.037 0.00 0.00 0.00 4.20
1858 2106 8.594550 TGGAAGCTGATATATTTAACTACTCCC 58.405 37.037 0.00 0.00 0.00 4.30
1859 2107 9.425577 GTGGAAGCTGATATATTTAACTACTCC 57.574 37.037 0.00 0.00 0.00 3.85
1860 2108 9.982651 TGTGGAAGCTGATATATTTAACTACTC 57.017 33.333 0.00 0.00 0.00 2.59
1881 2129 7.490657 AAGTGGTCAGTACTAATAATGTGGA 57.509 36.000 0.00 0.00 0.00 4.02
1896 2144 1.546476 AGAGCCGAGTAAAGTGGTCAG 59.454 52.381 0.00 0.00 0.00 3.51
1900 2148 2.743636 TGAAGAGCCGAGTAAAGTGG 57.256 50.000 0.00 0.00 0.00 4.00
2002 2250 8.951787 TTAACATTAAGCTGGTATCATTACGT 57.048 30.769 0.00 0.00 0.00 3.57
2007 2255 9.860650 TGGTAATTAACATTAAGCTGGTATCAT 57.139 29.630 0.00 0.00 0.00 2.45
2008 2256 9.116067 GTGGTAATTAACATTAAGCTGGTATCA 57.884 33.333 6.46 0.00 0.00 2.15
2009 2257 8.565416 GGTGGTAATTAACATTAAGCTGGTATC 58.435 37.037 6.46 0.00 0.00 2.24
2011 2259 6.829811 GGGTGGTAATTAACATTAAGCTGGTA 59.170 38.462 6.46 0.00 0.00 3.25
2012 2260 5.655090 GGGTGGTAATTAACATTAAGCTGGT 59.345 40.000 6.46 0.00 0.00 4.00
2013 2261 5.068591 GGGGTGGTAATTAACATTAAGCTGG 59.931 44.000 6.46 0.00 0.00 4.85
2014 2262 5.891551 AGGGGTGGTAATTAACATTAAGCTG 59.108 40.000 6.46 0.00 0.00 4.24
2015 2263 5.891551 CAGGGGTGGTAATTAACATTAAGCT 59.108 40.000 6.46 0.00 0.00 3.74
2016 2264 5.889289 TCAGGGGTGGTAATTAACATTAAGC 59.111 40.000 6.46 0.00 0.00 3.09
2017 2265 7.343357 TCTCAGGGGTGGTAATTAACATTAAG 58.657 38.462 6.46 0.14 0.00 1.85
2018 2266 7.273457 TCTCAGGGGTGGTAATTAACATTAA 57.727 36.000 6.46 0.00 0.00 1.40
2038 2286 4.252878 TGCACATCGAAATTAAGCTCTCA 58.747 39.130 0.00 0.00 0.00 3.27
2054 2302 1.475751 GGATGGACGGAGATTGCACAT 60.476 52.381 0.00 0.00 0.00 3.21
2071 2319 3.109151 ACATGCCACAAATTCATGGGAT 58.891 40.909 8.60 8.60 46.97 3.85
2079 2327 3.731089 CAACAAGGACATGCCACAAATT 58.269 40.909 8.58 0.00 40.02 1.82
2085 2333 0.604073 CATGCAACAAGGACATGCCA 59.396 50.000 8.58 0.00 39.31 4.92
2086 2334 0.604578 ACATGCAACAAGGACATGCC 59.395 50.000 0.00 0.00 43.96 4.40
2087 2335 3.119388 ACATACATGCAACAAGGACATGC 60.119 43.478 0.00 0.00 43.96 4.06
2088 2336 4.156373 TCACATACATGCAACAAGGACATG 59.844 41.667 0.00 0.00 45.28 3.21
2089 2337 4.334552 TCACATACATGCAACAAGGACAT 58.665 39.130 0.00 0.00 0.00 3.06
2090 2338 3.749226 TCACATACATGCAACAAGGACA 58.251 40.909 0.00 0.00 0.00 4.02
2091 2339 4.637534 AGATCACATACATGCAACAAGGAC 59.362 41.667 0.00 0.00 0.00 3.85
2092 2340 4.637091 CAGATCACATACATGCAACAAGGA 59.363 41.667 0.00 0.00 0.00 3.36
2093 2341 4.397103 ACAGATCACATACATGCAACAAGG 59.603 41.667 0.00 0.00 0.00 3.61
2094 2342 5.556355 ACAGATCACATACATGCAACAAG 57.444 39.130 0.00 0.00 0.00 3.16
2095 2343 5.063312 CGTACAGATCACATACATGCAACAA 59.937 40.000 0.00 0.00 0.00 2.83
2096 2344 4.566360 CGTACAGATCACATACATGCAACA 59.434 41.667 0.00 0.00 0.00 3.33
2097 2345 4.550831 GCGTACAGATCACATACATGCAAC 60.551 45.833 0.00 0.00 0.00 4.17
2098 2346 3.555547 GCGTACAGATCACATACATGCAA 59.444 43.478 0.00 0.00 0.00 4.08
2099 2347 3.123050 GCGTACAGATCACATACATGCA 58.877 45.455 0.00 0.00 0.00 3.96
2100 2348 2.153817 CGCGTACAGATCACATACATGC 59.846 50.000 0.00 0.00 0.00 4.06
2101 2349 3.372060 ACGCGTACAGATCACATACATG 58.628 45.455 11.67 0.00 0.00 3.21
2120 2368 1.792949 GGTGTGAGTTACAAGCTGACG 59.207 52.381 0.00 0.00 41.89 4.35
2152 2400 9.764363 AAGAAAGGCGAAAATTAAAGAAGAATT 57.236 25.926 0.00 0.00 0.00 2.17
2204 2452 0.613777 GAGATGGACTCAAACCCGGT 59.386 55.000 0.00 0.00 44.36 5.28
2205 2453 3.460648 GAGATGGACTCAAACCCGG 57.539 57.895 0.00 0.00 44.36 5.73
2208 2456 7.495886 GTGCAACAAGAGATGGACTCAAACC 62.496 48.000 0.00 0.00 41.93 3.27
2212 2460 2.369860 AGTGCAACAAGAGATGGACTCA 59.630 45.455 0.00 0.00 43.84 3.41
2213 2461 2.740981 CAGTGCAACAAGAGATGGACTC 59.259 50.000 0.00 0.00 43.84 3.36
2215 2463 2.481952 GACAGTGCAACAAGAGATGGAC 59.518 50.000 0.00 0.00 41.43 4.02
2216 2464 2.771089 GACAGTGCAACAAGAGATGGA 58.229 47.619 0.00 0.00 41.43 3.41
2218 2466 2.138320 ACGACAGTGCAACAAGAGATG 58.862 47.619 0.00 0.00 41.43 2.90
2219 2467 2.533266 ACGACAGTGCAACAAGAGAT 57.467 45.000 0.00 0.00 41.43 2.75
2220 2468 1.933181 CAACGACAGTGCAACAAGAGA 59.067 47.619 0.00 0.00 41.43 3.10
2221 2469 1.665679 ACAACGACAGTGCAACAAGAG 59.334 47.619 0.00 0.00 41.43 2.85
2288 2536 3.363970 CGATGTTCACCCTCTTTTTGTCG 60.364 47.826 0.00 0.00 0.00 4.35
2297 2546 0.036388 TTCCAGCGATGTTCACCCTC 60.036 55.000 0.00 0.00 0.00 4.30
2334 2583 6.755141 CCATCAACATTGGTCAAGAATGAATC 59.245 38.462 0.00 0.00 37.30 2.52
2358 2607 3.004315 ACAACGACAACAATGGATGAACC 59.996 43.478 0.00 0.00 39.54 3.62
2395 2648 4.302559 TGGCCTCTCTCTAGCGATATTA 57.697 45.455 3.32 0.00 0.00 0.98
2396 2649 3.162147 TGGCCTCTCTCTAGCGATATT 57.838 47.619 3.32 0.00 0.00 1.28
2397 2650 2.889170 TGGCCTCTCTCTAGCGATAT 57.111 50.000 3.32 0.00 0.00 1.63
2398 2651 2.509569 CTTGGCCTCTCTCTAGCGATA 58.490 52.381 3.32 0.00 0.00 2.92
2399 2652 1.327303 CTTGGCCTCTCTCTAGCGAT 58.673 55.000 3.32 0.00 0.00 4.58
2400 2653 0.753479 CCTTGGCCTCTCTCTAGCGA 60.753 60.000 3.32 0.00 0.00 4.93
2401 2654 1.739049 CCTTGGCCTCTCTCTAGCG 59.261 63.158 3.32 0.00 0.00 4.26
2416 2669 1.077265 CAATGTGGCACCTCCCCTT 59.923 57.895 16.26 0.00 0.00 3.95
2429 2682 4.579869 AGCACTAACGGAAGAATCAATGT 58.420 39.130 0.00 0.00 0.00 2.71
2505 2761 1.294659 GCTGACCTGCTCACCTTTCG 61.295 60.000 0.00 0.00 0.00 3.46
2513 2769 1.735920 CGACAGTGCTGACCTGCTC 60.736 63.158 6.17 0.00 33.09 4.26
2519 2775 1.063806 GTGTGATCGACAGTGCTGAC 58.936 55.000 6.17 0.00 34.28 3.51
2535 2791 3.007940 TCGGTTCTCAATTCTCATGGTGT 59.992 43.478 0.00 0.00 0.00 4.16
2536 2792 3.599343 TCGGTTCTCAATTCTCATGGTG 58.401 45.455 0.00 0.00 0.00 4.17
2537 2793 3.981071 TCGGTTCTCAATTCTCATGGT 57.019 42.857 0.00 0.00 0.00 3.55
2539 2795 5.178996 GGATGATCGGTTCTCAATTCTCATG 59.821 44.000 0.00 0.00 0.00 3.07
2541 2797 4.406972 AGGATGATCGGTTCTCAATTCTCA 59.593 41.667 0.00 0.00 0.00 3.27
2542 2798 4.749099 CAGGATGATCGGTTCTCAATTCTC 59.251 45.833 0.00 0.00 39.69 2.87
2543 2799 4.701765 CAGGATGATCGGTTCTCAATTCT 58.298 43.478 0.00 0.00 39.69 2.40
2544 2800 3.249559 GCAGGATGATCGGTTCTCAATTC 59.750 47.826 0.00 0.00 39.69 2.17
2546 2802 2.437281 AGCAGGATGATCGGTTCTCAAT 59.563 45.455 0.00 0.00 39.69 2.57
2547 2803 1.833630 AGCAGGATGATCGGTTCTCAA 59.166 47.619 0.00 0.00 39.69 3.02
2548 2804 1.137675 CAGCAGGATGATCGGTTCTCA 59.862 52.381 0.00 0.00 39.69 3.27
2550 2806 0.467384 CCAGCAGGATGATCGGTTCT 59.533 55.000 0.00 0.00 39.69 3.01
2551 2807 0.179000 ACCAGCAGGATGATCGGTTC 59.821 55.000 0.35 0.00 39.69 3.62
2552 2808 0.107508 CACCAGCAGGATGATCGGTT 60.108 55.000 0.35 0.00 39.69 4.44
2553 2809 0.977627 TCACCAGCAGGATGATCGGT 60.978 55.000 0.35 0.00 39.69 4.69
2554 2810 0.249784 CTCACCAGCAGGATGATCGG 60.250 60.000 0.35 0.00 39.69 4.18
2555 2811 0.879400 GCTCACCAGCAGGATGATCG 60.879 60.000 0.35 0.00 46.06 3.69
2556 2812 3.003740 GCTCACCAGCAGGATGATC 57.996 57.895 0.35 0.00 46.06 2.92
2571 2827 0.106708 TGTCAGTGAGGTGGTTGCTC 59.893 55.000 0.00 0.00 0.00 4.26
2617 2873 0.383231 CCGGTTAGTAGCCACTACCG 59.617 60.000 18.85 18.85 43.72 4.02
2619 2875 1.680207 CTCCCGGTTAGTAGCCACTAC 59.320 57.143 0.00 0.00 36.98 2.73
2620 2876 1.410648 CCTCCCGGTTAGTAGCCACTA 60.411 57.143 0.00 0.00 36.14 2.74
2623 2879 1.389327 ACCTCCCGGTTAGTAGCCA 59.611 57.895 0.00 0.00 42.13 4.75
2748 3089 1.381928 CCAGCTAGCCACCTGCATTG 61.382 60.000 12.13 0.00 44.83 2.82
2749 3090 1.077212 CCAGCTAGCCACCTGCATT 60.077 57.895 12.13 0.00 44.83 3.56
2777 3123 3.435746 CCCTCCATCTCACTCACTAGCTA 60.436 52.174 0.00 0.00 0.00 3.32
2778 3124 2.665165 CCTCCATCTCACTCACTAGCT 58.335 52.381 0.00 0.00 0.00 3.32
2779 3125 1.686052 CCCTCCATCTCACTCACTAGC 59.314 57.143 0.00 0.00 0.00 3.42
2780 3126 2.315176 CCCCTCCATCTCACTCACTAG 58.685 57.143 0.00 0.00 0.00 2.57
2781 3127 1.646447 ACCCCTCCATCTCACTCACTA 59.354 52.381 0.00 0.00 0.00 2.74
2839 3192 1.608717 ATGTGGCCTGTCTCCTCGAC 61.609 60.000 3.32 0.00 43.14 4.20
2844 3197 0.678048 GGTTCATGTGGCCTGTCTCC 60.678 60.000 3.32 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.