Multiple sequence alignment - TraesCS2A01G292100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G292100 chr2A 100.000 5408 0 0 1 5408 503007346 503001939 0.000000e+00 9987.0
1 TraesCS2A01G292100 chr2D 93.921 4129 167 26 366 4438 372276820 372272720 0.000000e+00 6157.0
2 TraesCS2A01G292100 chr2D 86.720 881 47 29 4560 5408 372272695 372271853 0.000000e+00 915.0
3 TraesCS2A01G292100 chr2B 93.437 2575 102 22 1875 4418 441862417 441859879 0.000000e+00 3757.0
4 TraesCS2A01G292100 chr2B 93.002 1186 62 6 674 1858 441867385 441866220 0.000000e+00 1711.0
5 TraesCS2A01G292100 chr7B 82.969 229 36 1 5178 5403 711143074 711143302 2.550000e-48 204.0
6 TraesCS2A01G292100 chr7B 92.308 91 5 2 1 90 666094655 666094566 1.580000e-25 128.0
7 TraesCS2A01G292100 chr5A 79.741 232 40 5 5182 5408 649414368 649414597 1.560000e-35 161.0
8 TraesCS2A01G292100 chr5A 95.000 80 4 0 1 80 560569726 560569647 5.690000e-25 126.0
9 TraesCS2A01G292100 chr5B 94.231 104 5 1 4656 4758 45810413 45810310 2.020000e-34 158.0
10 TraesCS2A01G292100 chr5B 92.135 89 5 2 1 88 81555315 81555228 2.050000e-24 124.0
11 TraesCS2A01G292100 chr5B 92.045 88 6 1 1 88 494655614 494655528 7.360000e-24 122.0
12 TraesCS2A01G292100 chrUn 97.333 75 2 0 1 75 89840939 89841013 1.580000e-25 128.0
13 TraesCS2A01G292100 chr6A 97.333 75 2 0 1 75 73654725 73654651 1.580000e-25 128.0
14 TraesCS2A01G292100 chr5D 93.023 86 5 1 1 86 455877238 455877154 2.050000e-24 124.0
15 TraesCS2A01G292100 chr5D 91.860 86 7 0 1 86 509248878 509248963 2.650000e-23 121.0
16 TraesCS2A01G292100 chr1D 92.941 85 4 2 1 83 189393005 189392921 7.360000e-24 122.0
17 TraesCS2A01G292100 chr1D 97.674 43 0 1 337 378 414778569 414778527 7.510000e-09 73.1
18 TraesCS2A01G292100 chr3B 91.228 57 5 0 322 378 420930040 420930096 1.610000e-10 78.7
19 TraesCS2A01G292100 chr4D 85.714 70 7 3 311 378 369257339 369257407 2.700000e-08 71.3
20 TraesCS2A01G292100 chr7D 100.000 34 0 0 347 380 118833510 118833543 4.520000e-06 63.9
21 TraesCS2A01G292100 chr6B 92.857 42 3 0 337 378 152210777 152210818 1.630000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G292100 chr2A 503001939 503007346 5407 True 9987 9987 100.0000 1 5408 1 chr2A.!!$R1 5407
1 TraesCS2A01G292100 chr2D 372271853 372276820 4967 True 3536 6157 90.3205 366 5408 2 chr2D.!!$R1 5042
2 TraesCS2A01G292100 chr2B 441859879 441867385 7506 True 2734 3757 93.2195 674 4418 2 chr2B.!!$R1 3744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
766 771 0.036294 CCACTCTCTCGTTTTCCCCC 60.036 60.000 0.00 0.0 0.00 5.40 F
771 776 0.462047 CTCTCGTTTTCCCCCATCCG 60.462 60.000 0.00 0.0 0.00 4.18 F
861 866 1.153901 CCTTCCGAGCGTCGCTTTA 60.154 57.895 22.67 7.1 39.88 1.85 F
1136 1141 1.184970 CCCCAAATCCAAAGGTGCGT 61.185 55.000 0.00 0.0 0.00 5.24 F
1238 1247 1.268539 GCTTCGTGGTTTCAGTGTTGG 60.269 52.381 0.00 0.0 0.00 3.77 F
2104 5900 1.705873 TGCCCCCATTTACGTTTTGT 58.294 45.000 0.00 0.0 0.00 2.83 F
2158 5954 2.103094 CGCTCCTGAATGTATGAAGGGA 59.897 50.000 0.00 0.0 0.00 4.20 F
3902 7739 0.173255 CTTAGTTGCCCCCAAATGCG 59.827 55.000 0.00 0.0 30.98 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 1747 1.813513 ATGGTGCGTGGAGAGAAAAG 58.186 50.000 0.00 0.0 0.00 2.27 R
2138 5934 3.135530 ACTCCCTTCATACATTCAGGAGC 59.864 47.826 3.12 0.0 42.59 4.70 R
2498 6294 3.679389 CACAGTAAAGAACCTCCTGCAT 58.321 45.455 0.00 0.0 0.00 3.96 R
2885 6681 2.033747 CGAGTGCACACGCCTATATTTG 60.034 50.000 23.11 0.0 37.32 2.32 R
3177 6973 1.202290 GGGTTGGCATATTTGTCAGCG 60.202 52.381 0.00 0.0 39.34 5.18 R
3397 7207 0.179073 CAACCTGACTATCTGGGCCG 60.179 60.000 0.00 0.0 39.50 6.13 R
4142 7981 0.174845 CCATCTTTGCGACGTAGGGA 59.825 55.000 0.00 0.0 0.00 4.20 R
5040 8910 0.531974 ACGACACTTTGCGATGGTGT 60.532 50.000 11.50 11.5 45.26 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 5.477607 ACTTTTAAAGTTAATGTGGCCCC 57.522 39.130 4.30 0.00 39.04 5.80
50 51 4.021807 ACTTTTAAAGTTAATGTGGCCCCG 60.022 41.667 4.30 0.00 39.04 5.73
51 52 2.883122 TAAAGTTAATGTGGCCCCGT 57.117 45.000 0.00 0.00 0.00 5.28
52 53 2.003937 AAAGTTAATGTGGCCCCGTT 57.996 45.000 0.00 0.00 0.00 4.44
53 54 2.883122 AAGTTAATGTGGCCCCGTTA 57.117 45.000 0.00 0.00 0.00 3.18
54 55 2.118313 AGTTAATGTGGCCCCGTTAC 57.882 50.000 0.00 0.00 0.00 2.50
55 56 1.351683 AGTTAATGTGGCCCCGTTACA 59.648 47.619 0.00 0.00 0.00 2.41
56 57 2.161030 GTTAATGTGGCCCCGTTACAA 58.839 47.619 0.00 0.00 0.00 2.41
57 58 1.823797 TAATGTGGCCCCGTTACAAC 58.176 50.000 0.00 0.00 0.00 3.32
66 67 2.462468 CGTTACAACGCACGGACG 59.538 61.111 1.04 0.00 46.06 4.79
73 74 2.726274 ACGCACGGACGTTCTTCT 59.274 55.556 0.00 0.00 45.75 2.85
74 75 1.951510 ACGCACGGACGTTCTTCTA 59.048 52.632 0.00 0.00 45.75 2.10
75 76 0.311790 ACGCACGGACGTTCTTCTAA 59.688 50.000 0.00 0.00 45.75 2.10
76 77 1.068055 ACGCACGGACGTTCTTCTAAT 60.068 47.619 0.00 0.00 45.75 1.73
77 78 1.990563 CGCACGGACGTTCTTCTAATT 59.009 47.619 0.00 0.00 0.00 1.40
78 79 2.410730 CGCACGGACGTTCTTCTAATTT 59.589 45.455 0.00 0.00 0.00 1.82
79 80 3.120786 CGCACGGACGTTCTTCTAATTTT 60.121 43.478 0.00 0.00 0.00 1.82
80 81 4.392216 GCACGGACGTTCTTCTAATTTTC 58.608 43.478 0.00 0.00 0.00 2.29
81 82 4.151867 GCACGGACGTTCTTCTAATTTTCT 59.848 41.667 0.00 0.00 0.00 2.52
82 83 5.346822 GCACGGACGTTCTTCTAATTTTCTA 59.653 40.000 0.00 0.00 0.00 2.10
83 84 6.035758 GCACGGACGTTCTTCTAATTTTCTAT 59.964 38.462 0.00 0.00 0.00 1.98
84 85 7.221452 GCACGGACGTTCTTCTAATTTTCTATA 59.779 37.037 0.00 0.00 0.00 1.31
85 86 8.744011 CACGGACGTTCTTCTAATTTTCTATAG 58.256 37.037 0.00 0.00 0.00 1.31
86 87 8.680903 ACGGACGTTCTTCTAATTTTCTATAGA 58.319 33.333 0.00 0.00 0.00 1.98
87 88 9.512435 CGGACGTTCTTCTAATTTTCTATAGAA 57.488 33.333 11.24 11.24 36.16 2.10
100 101 9.490379 AATTTTCTATAGAAAGTGAGTGTCGTT 57.510 29.630 23.41 4.51 43.90 3.85
101 102 7.869016 TTTCTATAGAAAGTGAGTGTCGTTG 57.131 36.000 21.46 0.00 38.94 4.10
102 103 5.950883 TCTATAGAAAGTGAGTGTCGTTGG 58.049 41.667 0.00 0.00 0.00 3.77
103 104 2.981859 AGAAAGTGAGTGTCGTTGGT 57.018 45.000 0.00 0.00 0.00 3.67
104 105 3.261981 AGAAAGTGAGTGTCGTTGGTT 57.738 42.857 0.00 0.00 0.00 3.67
105 106 2.936498 AGAAAGTGAGTGTCGTTGGTTG 59.064 45.455 0.00 0.00 0.00 3.77
106 107 1.663695 AAGTGAGTGTCGTTGGTTGG 58.336 50.000 0.00 0.00 0.00 3.77
107 108 0.828022 AGTGAGTGTCGTTGGTTGGA 59.172 50.000 0.00 0.00 0.00 3.53
108 109 1.202533 AGTGAGTGTCGTTGGTTGGAG 60.203 52.381 0.00 0.00 0.00 3.86
109 110 1.116308 TGAGTGTCGTTGGTTGGAGA 58.884 50.000 0.00 0.00 0.00 3.71
110 111 1.691976 TGAGTGTCGTTGGTTGGAGAT 59.308 47.619 0.00 0.00 0.00 2.75
111 112 2.894765 TGAGTGTCGTTGGTTGGAGATA 59.105 45.455 0.00 0.00 0.00 1.98
112 113 3.322541 TGAGTGTCGTTGGTTGGAGATAA 59.677 43.478 0.00 0.00 0.00 1.75
113 114 4.202274 TGAGTGTCGTTGGTTGGAGATAAA 60.202 41.667 0.00 0.00 0.00 1.40
114 115 4.315803 AGTGTCGTTGGTTGGAGATAAAG 58.684 43.478 0.00 0.00 0.00 1.85
115 116 3.071479 TGTCGTTGGTTGGAGATAAAGC 58.929 45.455 0.00 0.00 0.00 3.51
116 117 2.093783 GTCGTTGGTTGGAGATAAAGCG 59.906 50.000 0.00 0.00 0.00 4.68
117 118 2.073816 CGTTGGTTGGAGATAAAGCGT 58.926 47.619 0.00 0.00 0.00 5.07
118 119 2.159707 CGTTGGTTGGAGATAAAGCGTG 60.160 50.000 0.00 0.00 0.00 5.34
119 120 2.812011 GTTGGTTGGAGATAAAGCGTGT 59.188 45.455 0.00 0.00 0.00 4.49
120 121 3.134574 TGGTTGGAGATAAAGCGTGTT 57.865 42.857 0.00 0.00 0.00 3.32
121 122 3.071479 TGGTTGGAGATAAAGCGTGTTC 58.929 45.455 0.00 0.00 0.00 3.18
122 123 3.244422 TGGTTGGAGATAAAGCGTGTTCT 60.244 43.478 0.00 0.00 0.00 3.01
123 124 3.751698 GGTTGGAGATAAAGCGTGTTCTT 59.248 43.478 0.00 0.00 0.00 2.52
124 125 4.215613 GGTTGGAGATAAAGCGTGTTCTTT 59.784 41.667 0.00 0.00 39.40 2.52
125 126 5.278315 GGTTGGAGATAAAGCGTGTTCTTTT 60.278 40.000 0.00 0.00 37.46 2.27
126 127 6.072893 GGTTGGAGATAAAGCGTGTTCTTTTA 60.073 38.462 0.00 0.00 37.46 1.52
127 128 7.357303 GTTGGAGATAAAGCGTGTTCTTTTAA 58.643 34.615 0.00 0.00 37.46 1.52
128 129 7.681939 TGGAGATAAAGCGTGTTCTTTTAAT 57.318 32.000 0.00 0.00 37.46 1.40
129 130 7.748847 TGGAGATAAAGCGTGTTCTTTTAATC 58.251 34.615 0.00 0.00 37.46 1.75
130 131 7.389330 TGGAGATAAAGCGTGTTCTTTTAATCA 59.611 33.333 0.00 0.00 37.46 2.57
131 132 8.398665 GGAGATAAAGCGTGTTCTTTTAATCAT 58.601 33.333 0.00 0.00 37.46 2.45
132 133 9.427127 GAGATAAAGCGTGTTCTTTTAATCATC 57.573 33.333 0.00 0.00 37.46 2.92
133 134 9.167311 AGATAAAGCGTGTTCTTTTAATCATCT 57.833 29.630 0.00 0.00 37.46 2.90
134 135 9.774742 GATAAAGCGTGTTCTTTTAATCATCTT 57.225 29.630 0.00 0.00 37.46 2.40
135 136 7.858052 AAAGCGTGTTCTTTTAATCATCTTG 57.142 32.000 0.00 0.00 32.78 3.02
136 137 6.801539 AGCGTGTTCTTTTAATCATCTTGA 57.198 33.333 0.00 0.00 0.00 3.02
137 138 6.835914 AGCGTGTTCTTTTAATCATCTTGAG 58.164 36.000 0.00 0.00 0.00 3.02
138 139 6.428159 AGCGTGTTCTTTTAATCATCTTGAGT 59.572 34.615 0.00 0.00 0.00 3.41
139 140 6.738649 GCGTGTTCTTTTAATCATCTTGAGTC 59.261 38.462 0.00 0.00 0.00 3.36
140 141 7.360438 GCGTGTTCTTTTAATCATCTTGAGTCT 60.360 37.037 0.00 0.00 0.00 3.24
141 142 7.954248 CGTGTTCTTTTAATCATCTTGAGTCTG 59.046 37.037 0.00 0.00 0.00 3.51
142 143 8.233190 GTGTTCTTTTAATCATCTTGAGTCTGG 58.767 37.037 0.00 0.00 0.00 3.86
143 144 7.939039 TGTTCTTTTAATCATCTTGAGTCTGGT 59.061 33.333 0.00 0.00 0.00 4.00
144 145 9.436957 GTTCTTTTAATCATCTTGAGTCTGGTA 57.563 33.333 0.00 0.00 0.00 3.25
148 149 9.793259 TTTTAATCATCTTGAGTCTGGTAAACT 57.207 29.630 0.00 0.00 0.00 2.66
149 150 9.793259 TTTAATCATCTTGAGTCTGGTAAACTT 57.207 29.630 0.00 0.00 0.00 2.66
150 151 9.793259 TTAATCATCTTGAGTCTGGTAAACTTT 57.207 29.630 0.00 0.00 0.00 2.66
151 152 7.678947 ATCATCTTGAGTCTGGTAAACTTTG 57.321 36.000 0.00 0.00 0.00 2.77
152 153 6.591935 TCATCTTGAGTCTGGTAAACTTTGT 58.408 36.000 0.00 0.00 0.00 2.83
153 154 6.483307 TCATCTTGAGTCTGGTAAACTTTGTG 59.517 38.462 0.00 0.00 0.00 3.33
154 155 5.984725 TCTTGAGTCTGGTAAACTTTGTGA 58.015 37.500 0.00 0.00 0.00 3.58
155 156 6.049149 TCTTGAGTCTGGTAAACTTTGTGAG 58.951 40.000 0.00 0.00 0.00 3.51
156 157 5.607939 TGAGTCTGGTAAACTTTGTGAGA 57.392 39.130 0.00 0.00 0.00 3.27
157 158 5.984725 TGAGTCTGGTAAACTTTGTGAGAA 58.015 37.500 0.00 0.00 0.00 2.87
158 159 6.411376 TGAGTCTGGTAAACTTTGTGAGAAA 58.589 36.000 0.00 0.00 0.00 2.52
159 160 6.882140 TGAGTCTGGTAAACTTTGTGAGAAAA 59.118 34.615 0.00 0.00 0.00 2.29
160 161 7.392113 TGAGTCTGGTAAACTTTGTGAGAAAAA 59.608 33.333 0.00 0.00 0.00 1.94
161 162 7.535997 AGTCTGGTAAACTTTGTGAGAAAAAC 58.464 34.615 0.00 0.00 0.00 2.43
162 163 7.393515 AGTCTGGTAAACTTTGTGAGAAAAACT 59.606 33.333 0.00 0.00 0.00 2.66
163 164 7.484959 GTCTGGTAAACTTTGTGAGAAAAACTG 59.515 37.037 0.00 0.00 0.00 3.16
164 165 7.175990 TCTGGTAAACTTTGTGAGAAAAACTGT 59.824 33.333 0.00 0.00 0.00 3.55
165 166 8.338072 TGGTAAACTTTGTGAGAAAAACTGTA 57.662 30.769 0.00 0.00 0.00 2.74
166 167 8.794553 TGGTAAACTTTGTGAGAAAAACTGTAA 58.205 29.630 0.00 0.00 0.00 2.41
167 168 9.628746 GGTAAACTTTGTGAGAAAAACTGTAAA 57.371 29.630 0.00 0.00 0.00 2.01
226 227 8.964476 TTTTTGCAAGGATACAAAAATTACCA 57.036 26.923 8.99 0.00 45.73 3.25
227 228 9.566432 TTTTTGCAAGGATACAAAAATTACCAT 57.434 25.926 8.99 0.00 45.73 3.55
231 232 9.646427 TGCAAGGATACAAAAATTACCATAAAC 57.354 29.630 0.00 0.00 41.41 2.01
232 233 9.093970 GCAAGGATACAAAAATTACCATAAACC 57.906 33.333 0.00 0.00 41.41 3.27
239 240 8.047413 ACAAAAATTACCATAAACCTAGACCG 57.953 34.615 0.00 0.00 0.00 4.79
240 241 7.666804 ACAAAAATTACCATAAACCTAGACCGT 59.333 33.333 0.00 0.00 0.00 4.83
241 242 9.165035 CAAAAATTACCATAAACCTAGACCGTA 57.835 33.333 0.00 0.00 0.00 4.02
242 243 9.910267 AAAAATTACCATAAACCTAGACCGTAT 57.090 29.630 0.00 0.00 0.00 3.06
247 248 7.607615 ACCATAAACCTAGACCGTATATTGT 57.392 36.000 0.00 0.00 0.00 2.71
248 249 7.439381 ACCATAAACCTAGACCGTATATTGTG 58.561 38.462 0.00 0.00 0.00 3.33
249 250 7.070322 ACCATAAACCTAGACCGTATATTGTGT 59.930 37.037 0.00 0.00 0.00 3.72
250 251 7.597743 CCATAAACCTAGACCGTATATTGTGTC 59.402 40.741 0.00 0.00 0.00 3.67
251 252 6.534475 AAACCTAGACCGTATATTGTGTCA 57.466 37.500 0.00 0.00 0.00 3.58
252 253 5.769484 ACCTAGACCGTATATTGTGTCAG 57.231 43.478 0.00 0.00 0.00 3.51
253 254 4.583489 ACCTAGACCGTATATTGTGTCAGG 59.417 45.833 0.00 0.00 34.76 3.86
254 255 4.825634 CCTAGACCGTATATTGTGTCAGGA 59.174 45.833 0.00 0.00 32.51 3.86
255 256 5.477291 CCTAGACCGTATATTGTGTCAGGAT 59.523 44.000 0.00 0.00 32.51 3.24
256 257 6.657966 CCTAGACCGTATATTGTGTCAGGATA 59.342 42.308 0.00 0.00 32.51 2.59
257 258 7.339721 CCTAGACCGTATATTGTGTCAGGATAT 59.660 40.741 0.00 0.00 32.51 1.63
258 259 9.392259 CTAGACCGTATATTGTGTCAGGATATA 57.608 37.037 0.00 0.00 0.00 0.86
259 260 8.053026 AGACCGTATATTGTGTCAGGATATAC 57.947 38.462 11.88 11.88 36.54 1.47
260 261 7.668469 AGACCGTATATTGTGTCAGGATATACA 59.332 37.037 17.46 0.00 38.34 2.29
261 262 7.600065 ACCGTATATTGTGTCAGGATATACAC 58.400 38.462 17.46 0.00 44.97 2.90
262 263 7.450634 ACCGTATATTGTGTCAGGATATACACT 59.549 37.037 17.46 6.40 44.99 3.55
263 264 8.304596 CCGTATATTGTGTCAGGATATACACTT 58.695 37.037 17.46 0.11 44.99 3.16
269 270 9.733556 ATTGTGTCAGGATATACACTTAAAACA 57.266 29.630 7.75 0.00 44.99 2.83
270 271 9.733556 TTGTGTCAGGATATACACTTAAAACAT 57.266 29.630 7.75 0.00 44.99 2.71
271 272 9.733556 TGTGTCAGGATATACACTTAAAACATT 57.266 29.630 7.75 0.00 44.99 2.71
272 273 9.988350 GTGTCAGGATATACACTTAAAACATTG 57.012 33.333 0.00 0.00 42.17 2.82
273 274 9.733556 TGTCAGGATATACACTTAAAACATTGT 57.266 29.630 0.00 0.00 0.00 2.71
315 316 7.895975 AACATAGTATAGACGTATACGCTCA 57.104 36.000 24.64 10.19 44.10 4.26
316 317 8.489990 AACATAGTATAGACGTATACGCTCAT 57.510 34.615 24.64 16.15 44.10 2.90
317 318 9.591792 AACATAGTATAGACGTATACGCTCATA 57.408 33.333 24.64 15.23 44.10 2.15
318 319 9.029243 ACATAGTATAGACGTATACGCTCATAC 57.971 37.037 24.64 23.64 44.10 2.39
319 320 9.028185 CATAGTATAGACGTATACGCTCATACA 57.972 37.037 27.56 19.85 44.10 2.29
320 321 9.761504 ATAGTATAGACGTATACGCTCATACAT 57.238 33.333 27.56 20.60 44.10 2.29
322 323 9.029243 AGTATAGACGTATACGCTCATACATAC 57.971 37.037 27.56 23.14 44.10 2.39
323 324 7.838771 ATAGACGTATACGCTCATACATACA 57.161 36.000 24.64 5.56 44.43 2.29
324 325 5.924786 AGACGTATACGCTCATACATACAC 58.075 41.667 24.64 1.70 44.43 2.90
325 326 5.467735 AGACGTATACGCTCATACATACACA 59.532 40.000 24.64 0.00 44.43 3.72
326 327 6.148976 AGACGTATACGCTCATACATACACAT 59.851 38.462 24.64 0.00 44.43 3.21
327 328 7.332678 AGACGTATACGCTCATACATACACATA 59.667 37.037 24.64 0.00 44.43 2.29
328 329 7.809665 ACGTATACGCTCATACATACACATAA 58.190 34.615 24.64 0.00 44.43 1.90
329 330 8.291740 ACGTATACGCTCATACATACACATAAA 58.708 33.333 24.64 0.00 44.43 1.40
330 331 8.572976 CGTATACGCTCATACATACACATAAAC 58.427 37.037 13.08 0.00 31.96 2.01
331 332 9.622004 GTATACGCTCATACATACACATAAACT 57.378 33.333 0.00 0.00 32.61 2.66
335 336 9.542462 ACGCTCATACATACACATAAACTATTT 57.458 29.630 0.00 0.00 0.00 1.40
353 354 9.444600 AAACTATTTTTATAAGCACCTTCGAGA 57.555 29.630 0.00 0.00 0.00 4.04
354 355 8.649973 ACTATTTTTATAAGCACCTTCGAGAG 57.350 34.615 0.00 0.00 0.00 3.20
355 356 8.475639 ACTATTTTTATAAGCACCTTCGAGAGA 58.524 33.333 0.00 0.00 39.20 3.10
356 357 6.963049 TTTTTATAAGCACCTTCGAGAGAC 57.037 37.500 0.00 0.00 41.84 3.36
357 358 4.650754 TTATAAGCACCTTCGAGAGACC 57.349 45.455 0.00 0.00 41.84 3.85
358 359 0.809385 TAAGCACCTTCGAGAGACCG 59.191 55.000 0.00 0.00 41.84 4.79
359 360 0.894184 AAGCACCTTCGAGAGACCGA 60.894 55.000 0.00 0.00 41.84 4.69
360 361 1.137825 GCACCTTCGAGAGACCGAG 59.862 63.158 0.00 0.00 41.84 4.63
361 362 1.137825 CACCTTCGAGAGACCGAGC 59.862 63.158 0.00 0.00 41.84 5.03
362 363 1.001887 ACCTTCGAGAGACCGAGCT 60.002 57.895 0.00 0.00 41.84 4.09
363 364 1.309499 ACCTTCGAGAGACCGAGCTG 61.309 60.000 0.00 0.00 41.84 4.24
364 365 1.027255 CCTTCGAGAGACCGAGCTGA 61.027 60.000 0.00 0.00 41.84 4.26
370 371 0.814457 AGAGACCGAGCTGACACATC 59.186 55.000 0.00 0.00 0.00 3.06
378 379 3.256558 CGAGCTGACACATCATCTTGAA 58.743 45.455 0.00 0.00 35.32 2.69
381 382 4.008330 AGCTGACACATCATCTTGAAAGG 58.992 43.478 0.00 0.00 33.22 3.11
383 384 4.094590 GCTGACACATCATCTTGAAAGGAG 59.905 45.833 0.00 0.00 33.22 3.69
390 391 3.942829 TCATCTTGAAAGGAGAATGCGT 58.057 40.909 0.00 0.00 0.00 5.24
407 408 2.616376 TGCGTGCAACAATGTAAGTCTT 59.384 40.909 0.00 0.00 35.74 3.01
425 427 1.142870 CTTGGACTTGAACTGGGGTGA 59.857 52.381 0.00 0.00 0.00 4.02
426 428 0.764890 TGGACTTGAACTGGGGTGAG 59.235 55.000 0.00 0.00 0.00 3.51
431 433 1.352622 TTGAACTGGGGTGAGCAGGT 61.353 55.000 0.00 0.00 0.00 4.00
436 438 0.911769 CTGGGGTGAGCAGGTGATAA 59.088 55.000 0.00 0.00 0.00 1.75
438 440 0.912486 GGGGTGAGCAGGTGATAACT 59.088 55.000 0.00 0.00 0.00 2.24
439 441 1.134371 GGGGTGAGCAGGTGATAACTC 60.134 57.143 0.00 0.00 0.00 3.01
440 442 1.834263 GGGTGAGCAGGTGATAACTCT 59.166 52.381 0.00 0.00 0.00 3.24
441 443 3.031736 GGGTGAGCAGGTGATAACTCTA 58.968 50.000 0.00 0.00 0.00 2.43
452 454 6.778069 CAGGTGATAACTCTATCCTCCTAACA 59.222 42.308 5.99 0.00 36.53 2.41
464 466 3.009033 TCCTCCTAACAATCCAACCACAG 59.991 47.826 0.00 0.00 0.00 3.66
465 467 3.009033 CCTCCTAACAATCCAACCACAGA 59.991 47.826 0.00 0.00 0.00 3.41
469 471 5.009631 CCTAACAATCCAACCACAGAATGA 58.990 41.667 0.00 0.00 39.69 2.57
472 474 4.665451 ACAATCCAACCACAGAATGATCA 58.335 39.130 0.00 0.00 39.69 2.92
473 475 5.266788 ACAATCCAACCACAGAATGATCAT 58.733 37.500 1.18 1.18 39.69 2.45
474 476 6.425735 ACAATCCAACCACAGAATGATCATA 58.574 36.000 9.04 0.00 39.69 2.15
477 479 4.227073 TCCAACCACAGAATGATCATACCA 59.773 41.667 9.04 0.00 39.69 3.25
489 491 9.499479 AGAATGATCATACCATAGAACATTGTC 57.501 33.333 9.04 0.00 37.37 3.18
511 513 9.820229 TTGTCGATGTGATCTTTTATTTTGTAC 57.180 29.630 0.00 0.00 0.00 2.90
512 514 8.166066 TGTCGATGTGATCTTTTATTTTGTACG 58.834 33.333 0.00 0.00 0.00 3.67
524 526 9.710979 CTTTTATTTTGTACGAGTCAGTTTTCA 57.289 29.630 0.00 0.00 0.00 2.69
534 536 5.465724 ACGAGTCAGTTTTCACCTATTTCAC 59.534 40.000 0.00 0.00 0.00 3.18
627 630 9.819267 TTTGAAGTTTTGTACGGGATTTATTTT 57.181 25.926 0.00 0.00 0.00 1.82
641 644 9.297586 CGGGATTTATTTTAAGTTTCTTTAGGC 57.702 33.333 0.00 0.00 0.00 3.93
653 656 2.184533 TCTTTAGGCAAGATGTCGGGA 58.815 47.619 0.00 0.00 36.51 5.14
722 727 2.361757 CGGCCCATCAAAATAAGCATCA 59.638 45.455 0.00 0.00 0.00 3.07
766 771 0.036294 CCACTCTCTCGTTTTCCCCC 60.036 60.000 0.00 0.00 0.00 5.40
767 772 0.685097 CACTCTCTCGTTTTCCCCCA 59.315 55.000 0.00 0.00 0.00 4.96
768 773 1.279271 CACTCTCTCGTTTTCCCCCAT 59.721 52.381 0.00 0.00 0.00 4.00
769 774 1.555533 ACTCTCTCGTTTTCCCCCATC 59.444 52.381 0.00 0.00 0.00 3.51
770 775 0.909623 TCTCTCGTTTTCCCCCATCC 59.090 55.000 0.00 0.00 0.00 3.51
771 776 0.462047 CTCTCGTTTTCCCCCATCCG 60.462 60.000 0.00 0.00 0.00 4.18
848 853 4.821589 CAGCGGCGACCTCCTTCC 62.822 72.222 12.98 0.00 0.00 3.46
861 866 1.153901 CCTTCCGAGCGTCGCTTTA 60.154 57.895 22.67 7.10 39.88 1.85
946 951 5.332055 CGTATTATTCGTCGGTCATGGTTTC 60.332 44.000 0.00 0.00 0.00 2.78
1108 1113 3.710722 CGGCCCTGTCTTGCCTCT 61.711 66.667 0.00 0.00 45.71 3.69
1136 1141 1.184970 CCCCAAATCCAAAGGTGCGT 61.185 55.000 0.00 0.00 0.00 5.24
1218 1227 3.732212 TCTCGGAATTGTGATATGCCTG 58.268 45.455 0.00 0.00 0.00 4.85
1222 1231 3.304257 CGGAATTGTGATATGCCTGCTTC 60.304 47.826 0.00 0.00 0.00 3.86
1235 1244 1.299541 CTGCTTCGTGGTTTCAGTGT 58.700 50.000 0.00 0.00 0.00 3.55
1238 1247 1.268539 GCTTCGTGGTTTCAGTGTTGG 60.269 52.381 0.00 0.00 0.00 3.77
1342 1351 4.437682 TGACTTCACCTCCATTTTCAGT 57.562 40.909 0.00 0.00 0.00 3.41
1399 1408 3.084786 GAGTTGAAATTGTGCCCTAGCT 58.915 45.455 0.00 0.00 40.80 3.32
1464 1473 5.447818 GGTGAATCCGATTGTTGAAGATGTC 60.448 44.000 0.00 0.00 0.00 3.06
1503 1512 4.062991 CTGCGGTTAAGGAGTAAGTGTTT 58.937 43.478 0.00 0.00 0.00 2.83
1507 1516 5.744490 CGGTTAAGGAGTAAGTGTTTTGTG 58.256 41.667 0.00 0.00 0.00 3.33
1518 1527 8.396272 AGTAAGTGTTTTGTGCTATTTGATCT 57.604 30.769 0.00 0.00 0.00 2.75
1737 1747 4.158394 TCACAAGCAGATAAATTTCAGGCC 59.842 41.667 0.00 0.00 0.00 5.19
1791 1801 7.787028 TGGCTTGTTTGGTTACTTATTTCTTT 58.213 30.769 0.00 0.00 0.00 2.52
1824 1834 5.539048 TCGCAATTCTAGGCTTTATCTACC 58.461 41.667 0.00 0.00 0.00 3.18
2104 5900 1.705873 TGCCCCCATTTACGTTTTGT 58.294 45.000 0.00 0.00 0.00 2.83
2138 5934 7.627585 ATGCTTATGCTTATTTATTTGTGCG 57.372 32.000 1.96 0.00 40.48 5.34
2143 5939 3.694072 TGCTTATTTATTTGTGCGCTCCT 59.306 39.130 9.73 0.00 0.00 3.69
2158 5954 2.103094 CGCTCCTGAATGTATGAAGGGA 59.897 50.000 0.00 0.00 0.00 4.20
2163 5959 4.782691 TCCTGAATGTATGAAGGGAGTGAA 59.217 41.667 0.00 0.00 0.00 3.18
2164 5960 5.104776 TCCTGAATGTATGAAGGGAGTGAAG 60.105 44.000 0.00 0.00 0.00 3.02
2272 6068 2.488937 TGCTGTGGTATGCTCATGTTTG 59.511 45.455 0.00 0.00 0.00 2.93
2472 6268 7.271511 TGCTGTTTTTGTAAGGTGAAATTGAT 58.728 30.769 0.00 0.00 0.00 2.57
2521 6317 2.551071 GCAGGAGGTTCTTTACTGTGCT 60.551 50.000 0.00 0.00 0.00 4.40
2598 6394 8.921205 AGGATATTTTGAGATATTGCTTGCTTT 58.079 29.630 0.00 0.00 0.00 3.51
2760 6556 3.691609 CAGTAGGGGCATTTTCTGTCTTC 59.308 47.826 0.00 0.00 0.00 2.87
2765 6561 3.703052 GGGGCATTTTCTGTCTTCATCAT 59.297 43.478 0.00 0.00 0.00 2.45
2849 6645 4.516321 CACTTTTGTGGAGTCATGTCATGA 59.484 41.667 11.62 11.62 46.16 3.07
2880 6676 5.647658 CAGCTCATAACCTGTTCCAAATGTA 59.352 40.000 0.00 0.00 0.00 2.29
2885 6681 8.165239 TCATAACCTGTTCCAAATGTATATGC 57.835 34.615 0.00 0.00 0.00 3.14
2918 6714 2.162319 TGCACTCGTTAGATGCAACA 57.838 45.000 0.00 0.00 45.96 3.33
3177 6973 3.942115 GCCCTTCAGAAGTTCTGGTAATC 59.058 47.826 28.33 13.98 44.39 1.75
3260 7056 3.181505 CGTCCTGTTACTCTGCTCTGTAG 60.182 52.174 0.00 0.00 0.00 2.74
3397 7207 4.081642 TGGTCTATCTTGTAGGCAGAACAC 60.082 45.833 0.00 0.00 28.24 3.32
3450 7260 2.614057 CGGGAGATGGTGTTGATTTAGC 59.386 50.000 0.00 0.00 0.00 3.09
3456 7266 1.885887 TGGTGTTGATTTAGCTGCCAC 59.114 47.619 0.00 0.00 0.00 5.01
3601 7411 1.461091 CCTTCCTATACCGCCTGCGA 61.461 60.000 13.94 0.00 42.83 5.10
3602 7412 0.603569 CTTCCTATACCGCCTGCGAT 59.396 55.000 13.94 0.00 42.83 4.58
3603 7413 0.317160 TTCCTATACCGCCTGCGATG 59.683 55.000 13.94 0.00 42.83 3.84
3604 7414 1.738099 CCTATACCGCCTGCGATGC 60.738 63.158 13.94 0.00 42.83 3.91
3605 7415 1.006220 CTATACCGCCTGCGATGCA 60.006 57.895 13.94 0.00 42.83 3.96
3642 7479 2.265367 TGTGGCCTTTGTCCTCAGATA 58.735 47.619 3.32 0.00 0.00 1.98
3643 7480 2.237143 TGTGGCCTTTGTCCTCAGATAG 59.763 50.000 3.32 0.00 0.00 2.08
3644 7481 2.501723 GTGGCCTTTGTCCTCAGATAGA 59.498 50.000 3.32 0.00 0.00 1.98
3645 7482 3.135530 GTGGCCTTTGTCCTCAGATAGAT 59.864 47.826 3.32 0.00 0.00 1.98
3680 7517 5.440234 AAGGAGTACACTATCAGTATGCG 57.560 43.478 0.00 0.00 34.76 4.73
3899 7736 1.359130 AGAGCTTAGTTGCCCCCAAAT 59.641 47.619 0.00 0.00 33.34 2.32
3900 7737 1.478105 GAGCTTAGTTGCCCCCAAATG 59.522 52.381 0.00 0.00 30.98 2.32
3902 7739 0.173255 CTTAGTTGCCCCCAAATGCG 59.827 55.000 0.00 0.00 30.98 4.73
3904 7741 0.328592 TAGTTGCCCCCAAATGCGTA 59.671 50.000 0.00 0.00 30.98 4.42
3937 7776 3.197766 TCCCACTCTTTGCATACTTCGAT 59.802 43.478 0.00 0.00 0.00 3.59
3943 7782 4.507710 TCTTTGCATACTTCGATCTGCTT 58.492 39.130 4.29 0.00 35.66 3.91
3952 7791 5.551760 ACTTCGATCTGCTTAATGTTTGG 57.448 39.130 0.00 0.00 0.00 3.28
3956 7795 4.870426 TCGATCTGCTTAATGTTTGGTCTC 59.130 41.667 0.00 0.00 0.00 3.36
4013 7852 1.060622 CGAGAGCGTCGGTGACTAC 59.939 63.158 0.00 0.00 45.58 2.73
4142 7981 3.334054 GGGCTGAGAAGGCTGGGT 61.334 66.667 0.00 0.00 34.52 4.51
4175 8014 0.107945 AGATGGCAGAAGTCGAAGGC 60.108 55.000 0.00 0.00 0.00 4.35
4238 8077 2.902705 TCGAAGCCACTGTAACTGTT 57.097 45.000 0.00 0.00 0.00 3.16
4285 8124 3.889815 CCAGTCTATTTGATGCTTGGGA 58.110 45.455 0.00 0.00 0.00 4.37
4301 8140 8.593945 ATGCTTGGGAACTGATATTTTTCTTA 57.406 30.769 0.00 0.00 0.00 2.10
4383 8222 7.097192 TGGAATAATGCTACTTATGTCGATCC 58.903 38.462 0.00 0.00 0.00 3.36
4406 8245 8.385898 TCCGTTAAATGAATAAACTTGTGAGT 57.614 30.769 0.00 0.00 37.87 3.41
4408 8247 9.537848 CCGTTAAATGAATAAACTTGTGAGTAC 57.462 33.333 0.00 0.00 34.21 2.73
4433 8272 1.138069 TCTTGTGCGTTGAGAGTTGGA 59.862 47.619 0.00 0.00 0.00 3.53
4436 8275 1.939934 TGTGCGTTGAGAGTTGGAAAG 59.060 47.619 0.00 0.00 0.00 2.62
4437 8276 0.944386 TGCGTTGAGAGTTGGAAAGC 59.056 50.000 0.00 0.00 0.00 3.51
4438 8277 0.110644 GCGTTGAGAGTTGGAAAGCG 60.111 55.000 0.00 0.00 0.00 4.68
4439 8278 0.512952 CGTTGAGAGTTGGAAAGCGG 59.487 55.000 0.00 0.00 0.00 5.52
4440 8279 1.872237 CGTTGAGAGTTGGAAAGCGGA 60.872 52.381 0.00 0.00 0.00 5.54
4442 8281 2.099141 TGAGAGTTGGAAAGCGGATG 57.901 50.000 0.00 0.00 0.00 3.51
4443 8282 1.623311 TGAGAGTTGGAAAGCGGATGA 59.377 47.619 0.00 0.00 0.00 2.92
4444 8283 2.038426 TGAGAGTTGGAAAGCGGATGAA 59.962 45.455 0.00 0.00 0.00 2.57
4449 8288 3.947834 AGTTGGAAAGCGGATGAAATAGG 59.052 43.478 0.00 0.00 0.00 2.57
4450 8289 3.644966 TGGAAAGCGGATGAAATAGGT 57.355 42.857 0.00 0.00 0.00 3.08
4451 8290 3.278574 TGGAAAGCGGATGAAATAGGTG 58.721 45.455 0.00 0.00 0.00 4.00
4452 8291 2.033424 GGAAAGCGGATGAAATAGGTGC 59.967 50.000 0.00 0.00 0.00 5.01
4453 8292 1.680338 AAGCGGATGAAATAGGTGCC 58.320 50.000 0.00 0.00 0.00 5.01
4454 8293 0.546122 AGCGGATGAAATAGGTGCCA 59.454 50.000 0.00 0.00 0.00 4.92
4455 8294 1.143684 AGCGGATGAAATAGGTGCCAT 59.856 47.619 0.00 0.00 0.00 4.40
4456 8295 2.371841 AGCGGATGAAATAGGTGCCATA 59.628 45.455 0.00 0.00 0.00 2.74
4457 8296 3.146066 GCGGATGAAATAGGTGCCATAA 58.854 45.455 0.00 0.00 0.00 1.90
4458 8297 3.758554 GCGGATGAAATAGGTGCCATAAT 59.241 43.478 0.00 0.00 0.00 1.28
4459 8298 4.379813 GCGGATGAAATAGGTGCCATAATG 60.380 45.833 0.00 0.00 0.00 1.90
4460 8299 4.761739 CGGATGAAATAGGTGCCATAATGT 59.238 41.667 0.00 0.00 0.00 2.71
4461 8300 5.241506 CGGATGAAATAGGTGCCATAATGTT 59.758 40.000 0.00 0.00 0.00 2.71
4462 8301 6.239008 CGGATGAAATAGGTGCCATAATGTTT 60.239 38.462 0.00 0.00 0.00 2.83
4463 8302 7.500141 GGATGAAATAGGTGCCATAATGTTTT 58.500 34.615 0.00 0.00 0.00 2.43
4464 8303 7.986889 GGATGAAATAGGTGCCATAATGTTTTT 59.013 33.333 0.00 0.00 0.00 1.94
4465 8304 8.721019 ATGAAATAGGTGCCATAATGTTTTTG 57.279 30.769 0.00 0.00 0.00 2.44
4466 8305 7.675062 TGAAATAGGTGCCATAATGTTTTTGT 58.325 30.769 0.00 0.00 0.00 2.83
4467 8306 8.153550 TGAAATAGGTGCCATAATGTTTTTGTT 58.846 29.630 0.00 0.00 0.00 2.83
4468 8307 9.646427 GAAATAGGTGCCATAATGTTTTTGTTA 57.354 29.630 0.00 0.00 0.00 2.41
4469 8308 8.996024 AATAGGTGCCATAATGTTTTTGTTAC 57.004 30.769 0.00 0.00 0.00 2.50
4470 8309 6.412362 AGGTGCCATAATGTTTTTGTTACA 57.588 33.333 0.00 0.00 0.00 2.41
4471 8310 6.821388 AGGTGCCATAATGTTTTTGTTACAA 58.179 32.000 0.00 0.00 0.00 2.41
4472 8311 7.275920 AGGTGCCATAATGTTTTTGTTACAAA 58.724 30.769 6.41 6.41 0.00 2.83
4473 8312 7.936301 AGGTGCCATAATGTTTTTGTTACAAAT 59.064 29.630 11.50 0.00 0.00 2.32
4474 8313 9.209175 GGTGCCATAATGTTTTTGTTACAAATA 57.791 29.630 11.50 4.11 0.00 1.40
4494 8333 9.941325 ACAAATAATATTTTGATCTTGTGGCAA 57.059 25.926 6.84 0.00 38.58 4.52
4498 8337 7.852971 AATATTTTGATCTTGTGGCAAATGG 57.147 32.000 0.00 0.00 32.27 3.16
4499 8338 2.747396 TTGATCTTGTGGCAAATGGC 57.253 45.000 0.00 0.00 43.74 4.40
4500 8339 1.927487 TGATCTTGTGGCAAATGGCT 58.073 45.000 8.50 0.00 44.01 4.75
4501 8340 3.084536 TGATCTTGTGGCAAATGGCTA 57.915 42.857 8.50 0.00 44.01 3.93
4502 8341 3.018856 TGATCTTGTGGCAAATGGCTAG 58.981 45.455 8.50 3.81 44.01 3.42
4503 8342 1.176527 TCTTGTGGCAAATGGCTAGC 58.823 50.000 6.04 6.04 44.01 3.42
4504 8343 0.889994 CTTGTGGCAAATGGCTAGCA 59.110 50.000 18.24 2.97 44.01 3.49
4505 8344 0.889994 TTGTGGCAAATGGCTAGCAG 59.110 50.000 18.24 1.56 44.01 4.24
4506 8345 0.038021 TGTGGCAAATGGCTAGCAGA 59.962 50.000 18.24 2.09 44.01 4.26
4507 8346 1.176527 GTGGCAAATGGCTAGCAGAA 58.823 50.000 18.24 1.28 44.01 3.02
4508 8347 1.753073 GTGGCAAATGGCTAGCAGAAT 59.247 47.619 18.24 3.93 44.01 2.40
4509 8348 1.752498 TGGCAAATGGCTAGCAGAATG 59.248 47.619 18.24 10.90 44.01 2.67
4528 8367 1.490490 TGCCCTCTCTCTCTCTCTCTC 59.510 57.143 0.00 0.00 0.00 3.20
4529 8368 1.771255 GCCCTCTCTCTCTCTCTCTCT 59.229 57.143 0.00 0.00 0.00 3.10
4530 8369 2.486191 GCCCTCTCTCTCTCTCTCTCTG 60.486 59.091 0.00 0.00 0.00 3.35
4531 8370 2.105477 CCCTCTCTCTCTCTCTCTCTGG 59.895 59.091 0.00 0.00 0.00 3.86
4532 8371 3.041211 CCTCTCTCTCTCTCTCTCTGGA 58.959 54.545 0.00 0.00 0.00 3.86
4533 8372 3.649981 CCTCTCTCTCTCTCTCTCTGGAT 59.350 52.174 0.00 0.00 0.00 3.41
4534 8373 4.262808 CCTCTCTCTCTCTCTCTCTGGATC 60.263 54.167 0.00 0.00 0.00 3.36
4535 8374 4.297768 TCTCTCTCTCTCTCTCTGGATCA 58.702 47.826 0.00 0.00 0.00 2.92
4536 8375 4.909695 TCTCTCTCTCTCTCTCTGGATCAT 59.090 45.833 0.00 0.00 0.00 2.45
4537 8376 5.012458 TCTCTCTCTCTCTCTCTGGATCATC 59.988 48.000 0.00 0.00 0.00 2.92
4538 8377 4.659835 TCTCTCTCTCTCTCTGGATCATCA 59.340 45.833 0.00 0.00 0.00 3.07
4539 8378 4.976864 TCTCTCTCTCTCTGGATCATCAG 58.023 47.826 0.00 0.00 36.17 2.90
4540 8379 4.659835 TCTCTCTCTCTCTGGATCATCAGA 59.340 45.833 0.00 0.00 41.03 3.27
4541 8380 5.132480 TCTCTCTCTCTCTGGATCATCAGAA 59.868 44.000 3.67 0.00 42.46 3.02
4542 8381 5.379187 TCTCTCTCTCTGGATCATCAGAAG 58.621 45.833 3.67 4.79 42.46 2.85
4543 8382 3.890756 TCTCTCTCTGGATCATCAGAAGC 59.109 47.826 3.67 0.00 42.46 3.86
4544 8383 2.964464 TCTCTCTGGATCATCAGAAGCC 59.036 50.000 3.67 0.00 42.46 4.35
4545 8384 1.685517 TCTCTGGATCATCAGAAGCCG 59.314 52.381 3.67 0.00 42.46 5.52
4546 8385 0.755079 TCTGGATCATCAGAAGCCGG 59.245 55.000 0.00 0.00 40.43 6.13
4547 8386 0.883814 CTGGATCATCAGAAGCCGGC 60.884 60.000 21.89 21.89 36.93 6.13
4548 8387 1.146930 GGATCATCAGAAGCCGGCA 59.853 57.895 31.54 7.75 0.00 5.69
4549 8388 0.883814 GGATCATCAGAAGCCGGCAG 60.884 60.000 31.54 15.53 0.00 4.85
4550 8389 0.105593 GATCATCAGAAGCCGGCAGA 59.894 55.000 31.54 20.53 0.00 4.26
4551 8390 0.179062 ATCATCAGAAGCCGGCAGAC 60.179 55.000 31.54 18.84 0.00 3.51
4552 8391 1.078918 CATCAGAAGCCGGCAGACA 60.079 57.895 31.54 8.54 0.00 3.41
4553 8392 0.674581 CATCAGAAGCCGGCAGACAA 60.675 55.000 31.54 11.54 0.00 3.18
4554 8393 0.036732 ATCAGAAGCCGGCAGACAAA 59.963 50.000 31.54 9.71 0.00 2.83
4555 8394 0.179032 TCAGAAGCCGGCAGACAAAA 60.179 50.000 31.54 4.36 0.00 2.44
4556 8395 0.667993 CAGAAGCCGGCAGACAAAAA 59.332 50.000 31.54 0.00 0.00 1.94
4557 8396 1.270550 CAGAAGCCGGCAGACAAAAAT 59.729 47.619 31.54 0.00 0.00 1.82
4558 8397 1.270550 AGAAGCCGGCAGACAAAAATG 59.729 47.619 31.54 0.00 0.00 2.32
4559 8398 1.000274 GAAGCCGGCAGACAAAAATGT 60.000 47.619 31.54 0.00 0.00 2.71
4579 8418 0.595588 CATCGATGAGAGAGGTCCCG 59.404 60.000 21.02 0.00 0.00 5.14
4590 8430 1.957765 GAGGTCCCGGGAACTGTAGC 61.958 65.000 45.59 26.90 43.05 3.58
4595 8435 0.035439 CCCGGGAACTGTAGCATTGT 60.035 55.000 18.48 0.00 0.00 2.71
4636 8476 1.141657 GCAGCTGATTATGGGACCTCA 59.858 52.381 20.43 0.00 0.00 3.86
4681 8521 4.886579 AGCCAAAAACATGGTTCATCTTC 58.113 39.130 0.00 0.00 42.75 2.87
4699 8539 0.541998 TCGATGGTGACCCTGACACT 60.542 55.000 0.00 0.00 38.20 3.55
4719 8559 0.108424 AACATCTCAGGCTCGCTGTC 60.108 55.000 0.00 0.00 0.00 3.51
4720 8560 1.253593 ACATCTCAGGCTCGCTGTCA 61.254 55.000 0.00 0.00 0.00 3.58
4721 8561 0.528033 CATCTCAGGCTCGCTGTCAG 60.528 60.000 0.00 0.00 0.00 3.51
4722 8562 0.969917 ATCTCAGGCTCGCTGTCAGT 60.970 55.000 0.93 0.00 0.00 3.41
4733 8574 2.280119 TGTCAGTGCTGTCGTGCC 60.280 61.111 0.00 0.00 0.00 5.01
4740 8581 2.357034 GCTGTCGTGCCGGAGAAA 60.357 61.111 5.05 0.00 0.00 2.52
4755 8596 2.612604 GAGAAAAGAAGAGGTCCTCGC 58.387 52.381 13.41 9.67 35.36 5.03
4761 8602 1.282447 AGAAGAGGTCCTCGCTGACTA 59.718 52.381 13.41 0.00 35.36 2.59
4765 8606 0.251209 AGGTCCTCGCTGACTACACA 60.251 55.000 4.51 0.00 35.54 3.72
4792 8633 7.867909 CCTAAGATACTGCATTTTCATACTCGA 59.132 37.037 0.00 0.00 0.00 4.04
4801 8642 7.445121 TGCATTTTCATACTCGATTCCTAGAT 58.555 34.615 0.00 0.00 0.00 1.98
4814 8655 5.334105 CGATTCCTAGATGCCAAATTTACCG 60.334 44.000 0.00 0.00 0.00 4.02
4828 8669 0.251742 TTACCGGAACCTTCTCCCGA 60.252 55.000 9.46 0.00 45.58 5.14
4834 8675 2.028748 CGGAACCTTCTCCCGAAACTAA 60.029 50.000 0.00 0.00 45.58 2.24
4873 8740 3.132467 GCCTAAGTTCAGATTACGGAGGT 59.868 47.826 0.00 0.00 0.00 3.85
4874 8741 4.683832 CCTAAGTTCAGATTACGGAGGTG 58.316 47.826 0.00 0.00 0.00 4.00
4875 8742 4.159879 CCTAAGTTCAGATTACGGAGGTGT 59.840 45.833 0.00 0.00 0.00 4.16
4876 8743 5.359009 CCTAAGTTCAGATTACGGAGGTGTA 59.641 44.000 0.00 0.00 0.00 2.90
4877 8744 4.715527 AGTTCAGATTACGGAGGTGTAC 57.284 45.455 0.00 0.00 0.00 2.90
4927 8796 1.433985 TGGTGAGGTACAAGGGGAGTA 59.566 52.381 0.00 0.00 0.00 2.59
4994 8863 6.095377 GGATGACATGGACTGTTGATTTTTC 58.905 40.000 0.00 0.00 38.54 2.29
5047 8917 6.866010 TCATATTAATGCTGTGACACCATC 57.134 37.500 2.45 0.00 32.76 3.51
5050 8920 0.606130 AATGCTGTGACACCATCGCA 60.606 50.000 2.45 7.21 45.73 5.10
5068 8938 1.070175 GCAAAGTGTCGTACGCACATT 60.070 47.619 30.36 25.20 39.17 2.71
5076 8946 3.674281 TGTCGTACGCACATTATTTTCGT 59.326 39.130 11.24 0.00 37.19 3.85
5108 8978 1.621992 AGTTCGGCACTCTTCTCTCA 58.378 50.000 0.00 0.00 0.00 3.27
5110 8980 0.603569 TTCGGCACTCTTCTCTCACC 59.396 55.000 0.00 0.00 0.00 4.02
5115 8985 3.295973 GGCACTCTTCTCTCACCTCTAT 58.704 50.000 0.00 0.00 0.00 1.98
5133 9003 5.102953 TCTATGTTCCCTTGGACATGAAG 57.897 43.478 0.00 0.00 30.50 3.02
5158 9028 5.544176 ACATGGACTCAAACGGGATATATCT 59.456 40.000 12.42 0.00 0.00 1.98
5171 9041 5.178797 GGGATATATCTGATGTCAAACGGG 58.821 45.833 12.42 0.00 0.00 5.28
5173 9043 6.352222 GGGATATATCTGATGTCAAACGGGAT 60.352 42.308 12.42 0.00 0.00 3.85
5174 9044 6.758886 GGATATATCTGATGTCAAACGGGATC 59.241 42.308 12.42 0.00 0.00 3.36
5175 9045 5.815233 ATATCTGATGTCAAACGGGATCT 57.185 39.130 0.00 0.00 0.00 2.75
5177 9047 5.815233 ATCTGATGTCAAACGGGATCTAT 57.185 39.130 0.00 0.00 0.00 1.98
5178 9048 5.201713 TCTGATGTCAAACGGGATCTATC 57.798 43.478 0.00 0.00 0.00 2.08
5179 9049 4.895889 TCTGATGTCAAACGGGATCTATCT 59.104 41.667 0.00 0.00 0.00 1.98
5180 9050 6.068670 TCTGATGTCAAACGGGATCTATCTA 58.931 40.000 0.00 0.00 0.00 1.98
5181 9051 6.549736 TCTGATGTCAAACGGGATCTATCTAA 59.450 38.462 0.00 0.00 0.00 2.10
5182 9052 6.749139 TGATGTCAAACGGGATCTATCTAAG 58.251 40.000 0.00 0.00 0.00 2.18
5183 9053 5.531122 TGTCAAACGGGATCTATCTAAGG 57.469 43.478 0.00 0.00 0.00 2.69
5184 9054 4.202223 TGTCAAACGGGATCTATCTAAGGC 60.202 45.833 0.00 0.00 0.00 4.35
5185 9055 3.005472 TCAAACGGGATCTATCTAAGGCG 59.995 47.826 0.00 0.00 0.00 5.52
5186 9056 2.581216 ACGGGATCTATCTAAGGCGA 57.419 50.000 0.00 0.00 0.00 5.54
5187 9057 2.872732 ACGGGATCTATCTAAGGCGAA 58.127 47.619 0.00 0.00 0.00 4.70
5188 9058 2.820787 ACGGGATCTATCTAAGGCGAAG 59.179 50.000 0.00 0.00 0.00 3.79
5204 9074 3.806316 CGAAGCGTAAAACTCATTGGT 57.194 42.857 0.00 0.00 0.00 3.67
5205 9075 4.914312 CGAAGCGTAAAACTCATTGGTA 57.086 40.909 0.00 0.00 0.00 3.25
5206 9076 4.882447 CGAAGCGTAAAACTCATTGGTAG 58.118 43.478 0.00 0.00 0.00 3.18
5226 9096 2.151202 GTGGTCGAAAATTCAGAGGCA 58.849 47.619 0.00 0.00 0.00 4.75
5233 9103 3.304928 CGAAAATTCAGAGGCACAAGCTT 60.305 43.478 0.00 0.00 41.70 3.74
5240 9110 2.028112 CAGAGGCACAAGCTTAGTGGTA 60.028 50.000 22.20 0.00 41.70 3.25
5244 9114 1.610624 GCACAAGCTTAGTGGTAGCCA 60.611 52.381 22.20 0.00 39.47 4.75
5247 9117 0.912486 AAGCTTAGTGGTAGCCAGGG 59.088 55.000 0.00 0.00 39.47 4.45
5272 9142 4.394729 TCCATGACTTCAGGGTGTTTAAC 58.605 43.478 9.64 0.00 46.97 2.01
5276 9146 5.223449 TGACTTCAGGGTGTTTAACTAGG 57.777 43.478 0.00 0.00 0.00 3.02
5287 9157 2.380084 TTAACTAGGCTCTGTTGGCG 57.620 50.000 13.74 0.00 37.59 5.69
5289 9159 1.831652 AACTAGGCTCTGTTGGCGCT 61.832 55.000 7.64 0.00 37.59 5.92
5293 9163 3.663176 GCTCTGTTGGCGCTGCAA 61.663 61.111 7.64 0.03 0.00 4.08
5358 9228 7.148457 GCAGGTATTAAAAGCTCGATATTACCC 60.148 40.741 14.55 0.00 30.92 3.69
5360 9230 7.039504 AGGTATTAAAAGCTCGATATTACCCGA 60.040 37.037 14.55 0.00 30.92 5.14
5376 9246 1.302192 CGAAAGGGCGTTTGGAGGA 60.302 57.895 10.26 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.021807 CGGGGCCACATTAACTTTAAAAGT 60.022 41.667 5.46 0.00 45.46 2.66
28 29 4.021807 ACGGGGCCACATTAACTTTAAAAG 60.022 41.667 5.46 0.00 0.00 2.27
29 30 3.896272 ACGGGGCCACATTAACTTTAAAA 59.104 39.130 5.46 0.00 0.00 1.52
30 31 3.498334 ACGGGGCCACATTAACTTTAAA 58.502 40.909 5.46 0.00 0.00 1.52
31 32 3.157750 ACGGGGCCACATTAACTTTAA 57.842 42.857 5.46 0.00 0.00 1.52
32 33 2.883122 ACGGGGCCACATTAACTTTA 57.117 45.000 5.46 0.00 0.00 1.85
33 34 2.003937 AACGGGGCCACATTAACTTT 57.996 45.000 5.46 0.00 0.00 2.66
34 35 2.224818 TGTAACGGGGCCACATTAACTT 60.225 45.455 5.46 0.00 0.00 2.66
35 36 1.351683 TGTAACGGGGCCACATTAACT 59.648 47.619 5.46 0.00 0.00 2.24
36 37 1.823797 TGTAACGGGGCCACATTAAC 58.176 50.000 5.46 0.00 0.00 2.01
37 38 2.161030 GTTGTAACGGGGCCACATTAA 58.839 47.619 5.46 0.00 0.00 1.40
38 39 1.823797 GTTGTAACGGGGCCACATTA 58.176 50.000 5.46 0.00 0.00 1.90
39 40 2.648593 GTTGTAACGGGGCCACATT 58.351 52.632 5.46 0.00 0.00 2.71
40 41 4.408378 GTTGTAACGGGGCCACAT 57.592 55.556 5.46 0.00 0.00 3.21
50 51 3.616595 ACGTCCGTGCGTTGTAAC 58.383 55.556 0.00 0.00 43.04 2.50
57 58 1.625616 ATTAGAAGAACGTCCGTGCG 58.374 50.000 0.00 0.00 37.94 5.34
58 59 4.151867 AGAAAATTAGAAGAACGTCCGTGC 59.848 41.667 0.00 0.00 0.00 5.34
59 60 5.840940 AGAAAATTAGAAGAACGTCCGTG 57.159 39.130 0.00 0.00 0.00 4.94
60 61 8.680903 TCTATAGAAAATTAGAAGAACGTCCGT 58.319 33.333 0.00 0.00 0.00 4.69
61 62 9.512435 TTCTATAGAAAATTAGAAGAACGTCCG 57.488 33.333 12.87 0.00 32.23 4.79
74 75 9.490379 AACGACACTCACTTTCTATAGAAAATT 57.510 29.630 24.41 14.08 42.72 1.82
75 76 8.926710 CAACGACACTCACTTTCTATAGAAAAT 58.073 33.333 24.41 15.17 42.72 1.82
76 77 7.384115 CCAACGACACTCACTTTCTATAGAAAA 59.616 37.037 24.41 12.19 42.72 2.29
77 78 6.866770 CCAACGACACTCACTTTCTATAGAAA 59.133 38.462 23.26 23.26 41.29 2.52
78 79 6.015688 ACCAACGACACTCACTTTCTATAGAA 60.016 38.462 11.24 11.24 0.00 2.10
79 80 5.475909 ACCAACGACACTCACTTTCTATAGA 59.524 40.000 0.00 0.00 0.00 1.98
80 81 5.710984 ACCAACGACACTCACTTTCTATAG 58.289 41.667 0.00 0.00 0.00 1.31
81 82 5.717078 ACCAACGACACTCACTTTCTATA 57.283 39.130 0.00 0.00 0.00 1.31
82 83 4.602340 ACCAACGACACTCACTTTCTAT 57.398 40.909 0.00 0.00 0.00 1.98
83 84 4.116961 CAACCAACGACACTCACTTTCTA 58.883 43.478 0.00 0.00 0.00 2.10
84 85 2.936498 CAACCAACGACACTCACTTTCT 59.064 45.455 0.00 0.00 0.00 2.52
85 86 2.031683 CCAACCAACGACACTCACTTTC 59.968 50.000 0.00 0.00 0.00 2.62
86 87 2.014128 CCAACCAACGACACTCACTTT 58.986 47.619 0.00 0.00 0.00 2.66
87 88 1.208535 TCCAACCAACGACACTCACTT 59.791 47.619 0.00 0.00 0.00 3.16
88 89 0.828022 TCCAACCAACGACACTCACT 59.172 50.000 0.00 0.00 0.00 3.41
89 90 1.202486 TCTCCAACCAACGACACTCAC 60.202 52.381 0.00 0.00 0.00 3.51
90 91 1.116308 TCTCCAACCAACGACACTCA 58.884 50.000 0.00 0.00 0.00 3.41
91 92 2.457366 ATCTCCAACCAACGACACTC 57.543 50.000 0.00 0.00 0.00 3.51
92 93 4.315803 CTTTATCTCCAACCAACGACACT 58.684 43.478 0.00 0.00 0.00 3.55
93 94 3.120304 GCTTTATCTCCAACCAACGACAC 60.120 47.826 0.00 0.00 0.00 3.67
94 95 3.071479 GCTTTATCTCCAACCAACGACA 58.929 45.455 0.00 0.00 0.00 4.35
95 96 2.093783 CGCTTTATCTCCAACCAACGAC 59.906 50.000 0.00 0.00 0.00 4.34
96 97 2.289195 ACGCTTTATCTCCAACCAACGA 60.289 45.455 0.00 0.00 0.00 3.85
97 98 2.073816 ACGCTTTATCTCCAACCAACG 58.926 47.619 0.00 0.00 0.00 4.10
98 99 2.812011 ACACGCTTTATCTCCAACCAAC 59.188 45.455 0.00 0.00 0.00 3.77
99 100 3.134574 ACACGCTTTATCTCCAACCAA 57.865 42.857 0.00 0.00 0.00 3.67
100 101 2.851263 ACACGCTTTATCTCCAACCA 57.149 45.000 0.00 0.00 0.00 3.67
101 102 3.335579 AGAACACGCTTTATCTCCAACC 58.664 45.455 0.00 0.00 0.00 3.77
102 103 5.358298 AAAGAACACGCTTTATCTCCAAC 57.642 39.130 0.00 0.00 36.39 3.77
103 104 7.499321 TTAAAAGAACACGCTTTATCTCCAA 57.501 32.000 0.00 0.00 37.12 3.53
104 105 7.389330 TGATTAAAAGAACACGCTTTATCTCCA 59.611 33.333 0.00 0.00 37.12 3.86
105 106 7.748847 TGATTAAAAGAACACGCTTTATCTCC 58.251 34.615 0.00 0.00 37.12 3.71
106 107 9.427127 GATGATTAAAAGAACACGCTTTATCTC 57.573 33.333 0.00 0.00 37.12 2.75
107 108 9.167311 AGATGATTAAAAGAACACGCTTTATCT 57.833 29.630 0.00 0.00 37.12 1.98
108 109 9.774742 AAGATGATTAAAAGAACACGCTTTATC 57.225 29.630 0.00 0.00 37.12 1.75
109 110 9.559958 CAAGATGATTAAAAGAACACGCTTTAT 57.440 29.630 0.00 0.00 37.12 1.40
110 111 8.779303 TCAAGATGATTAAAAGAACACGCTTTA 58.221 29.630 0.00 0.00 37.12 1.85
111 112 7.648142 TCAAGATGATTAAAAGAACACGCTTT 58.352 30.769 0.00 0.00 39.65 3.51
112 113 7.041098 ACTCAAGATGATTAAAAGAACACGCTT 60.041 33.333 0.00 0.00 0.00 4.68
113 114 6.428159 ACTCAAGATGATTAAAAGAACACGCT 59.572 34.615 0.00 0.00 0.00 5.07
114 115 6.603095 ACTCAAGATGATTAAAAGAACACGC 58.397 36.000 0.00 0.00 0.00 5.34
115 116 7.954248 CAGACTCAAGATGATTAAAAGAACACG 59.046 37.037 0.00 0.00 0.00 4.49
116 117 8.233190 CCAGACTCAAGATGATTAAAAGAACAC 58.767 37.037 0.00 0.00 0.00 3.32
117 118 7.939039 ACCAGACTCAAGATGATTAAAAGAACA 59.061 33.333 0.00 0.00 0.00 3.18
118 119 8.329203 ACCAGACTCAAGATGATTAAAAGAAC 57.671 34.615 0.00 0.00 0.00 3.01
122 123 9.793259 AGTTTACCAGACTCAAGATGATTAAAA 57.207 29.630 0.00 0.00 0.00 1.52
123 124 9.793259 AAGTTTACCAGACTCAAGATGATTAAA 57.207 29.630 0.00 0.00 0.00 1.52
124 125 9.793259 AAAGTTTACCAGACTCAAGATGATTAA 57.207 29.630 0.00 0.00 0.00 1.40
125 126 9.219603 CAAAGTTTACCAGACTCAAGATGATTA 57.780 33.333 0.00 0.00 0.00 1.75
126 127 7.721399 ACAAAGTTTACCAGACTCAAGATGATT 59.279 33.333 0.00 0.00 0.00 2.57
127 128 7.173907 CACAAAGTTTACCAGACTCAAGATGAT 59.826 37.037 0.00 0.00 0.00 2.45
128 129 6.483307 CACAAAGTTTACCAGACTCAAGATGA 59.517 38.462 0.00 0.00 0.00 2.92
129 130 6.483307 TCACAAAGTTTACCAGACTCAAGATG 59.517 38.462 0.00 0.00 0.00 2.90
130 131 6.591935 TCACAAAGTTTACCAGACTCAAGAT 58.408 36.000 0.00 0.00 0.00 2.40
131 132 5.984725 TCACAAAGTTTACCAGACTCAAGA 58.015 37.500 0.00 0.00 0.00 3.02
132 133 6.049149 TCTCACAAAGTTTACCAGACTCAAG 58.951 40.000 0.00 0.00 0.00 3.02
133 134 5.984725 TCTCACAAAGTTTACCAGACTCAA 58.015 37.500 0.00 0.00 0.00 3.02
134 135 5.607939 TCTCACAAAGTTTACCAGACTCA 57.392 39.130 0.00 0.00 0.00 3.41
135 136 6.920569 TTTCTCACAAAGTTTACCAGACTC 57.079 37.500 0.00 0.00 0.00 3.36
136 137 7.393515 AGTTTTTCTCACAAAGTTTACCAGACT 59.606 33.333 0.00 0.00 0.00 3.24
137 138 7.484959 CAGTTTTTCTCACAAAGTTTACCAGAC 59.515 37.037 0.00 0.00 0.00 3.51
138 139 7.175990 ACAGTTTTTCTCACAAAGTTTACCAGA 59.824 33.333 0.00 0.00 0.00 3.86
139 140 7.312899 ACAGTTTTTCTCACAAAGTTTACCAG 58.687 34.615 0.00 0.00 0.00 4.00
140 141 7.222000 ACAGTTTTTCTCACAAAGTTTACCA 57.778 32.000 0.00 0.00 0.00 3.25
141 142 9.628746 TTTACAGTTTTTCTCACAAAGTTTACC 57.371 29.630 0.00 0.00 0.00 2.85
205 206 9.646427 GTTTATGGTAATTTTTGTATCCTTGCA 57.354 29.630 0.00 0.00 0.00 4.08
206 207 9.093970 GGTTTATGGTAATTTTTGTATCCTTGC 57.906 33.333 0.00 0.00 0.00 4.01
213 214 9.165035 CGGTCTAGGTTTATGGTAATTTTTGTA 57.835 33.333 0.00 0.00 0.00 2.41
214 215 7.666804 ACGGTCTAGGTTTATGGTAATTTTTGT 59.333 33.333 0.00 0.00 0.00 2.83
215 216 8.047413 ACGGTCTAGGTTTATGGTAATTTTTG 57.953 34.615 0.00 0.00 0.00 2.44
216 217 9.910267 ATACGGTCTAGGTTTATGGTAATTTTT 57.090 29.630 0.00 0.00 0.00 1.94
221 222 9.146586 ACAATATACGGTCTAGGTTTATGGTAA 57.853 33.333 0.00 0.00 0.00 2.85
222 223 8.579006 CACAATATACGGTCTAGGTTTATGGTA 58.421 37.037 0.00 0.00 0.00 3.25
223 224 7.070322 ACACAATATACGGTCTAGGTTTATGGT 59.930 37.037 0.00 0.00 0.00 3.55
224 225 7.439381 ACACAATATACGGTCTAGGTTTATGG 58.561 38.462 0.00 0.00 0.00 2.74
225 226 8.139350 TGACACAATATACGGTCTAGGTTTATG 58.861 37.037 0.00 0.00 0.00 1.90
226 227 8.241497 TGACACAATATACGGTCTAGGTTTAT 57.759 34.615 0.00 0.00 0.00 1.40
227 228 7.201848 CCTGACACAATATACGGTCTAGGTTTA 60.202 40.741 0.00 0.00 30.65 2.01
228 229 6.406624 CCTGACACAATATACGGTCTAGGTTT 60.407 42.308 0.00 0.00 30.65 3.27
229 230 5.068723 CCTGACACAATATACGGTCTAGGTT 59.931 44.000 0.00 0.00 30.65 3.50
230 231 4.583489 CCTGACACAATATACGGTCTAGGT 59.417 45.833 0.00 0.00 30.65 3.08
231 232 4.825634 TCCTGACACAATATACGGTCTAGG 59.174 45.833 0.00 0.00 33.61 3.02
232 233 6.576662 ATCCTGACACAATATACGGTCTAG 57.423 41.667 0.00 0.00 0.00 2.43
233 234 9.170734 GTATATCCTGACACAATATACGGTCTA 57.829 37.037 0.00 0.00 32.30 2.59
234 235 7.668469 TGTATATCCTGACACAATATACGGTCT 59.332 37.037 13.08 0.00 39.82 3.85
235 236 7.754027 GTGTATATCCTGACACAATATACGGTC 59.246 40.741 13.08 0.00 44.38 4.79
236 237 7.450634 AGTGTATATCCTGACACAATATACGGT 59.549 37.037 8.75 0.00 46.83 4.83
237 238 7.827701 AGTGTATATCCTGACACAATATACGG 58.172 38.462 8.75 0.00 46.83 4.02
243 244 9.733556 TGTTTTAAGTGTATATCCTGACACAAT 57.266 29.630 8.75 1.30 46.83 2.71
244 245 9.733556 ATGTTTTAAGTGTATATCCTGACACAA 57.266 29.630 8.75 0.00 46.83 3.33
245 246 9.733556 AATGTTTTAAGTGTATATCCTGACACA 57.266 29.630 8.75 0.00 46.83 3.72
246 247 9.988350 CAATGTTTTAAGTGTATATCCTGACAC 57.012 33.333 0.00 0.00 45.15 3.67
247 248 9.733556 ACAATGTTTTAAGTGTATATCCTGACA 57.266 29.630 0.00 0.00 0.00 3.58
289 290 9.423061 TGAGCGTATACGTCTATACTATGTTAA 57.577 33.333 25.04 0.83 42.22 2.01
290 291 8.986477 TGAGCGTATACGTCTATACTATGTTA 57.014 34.615 25.04 1.00 42.22 2.41
291 292 7.895975 TGAGCGTATACGTCTATACTATGTT 57.104 36.000 25.04 0.00 42.22 2.71
292 293 9.029243 GTATGAGCGTATACGTCTATACTATGT 57.971 37.037 25.04 6.13 42.22 2.29
293 294 9.028185 TGTATGAGCGTATACGTCTATACTATG 57.972 37.037 27.63 5.89 42.22 2.23
294 295 9.761504 ATGTATGAGCGTATACGTCTATACTAT 57.238 33.333 27.63 21.47 42.22 2.12
296 297 9.029243 GTATGTATGAGCGTATACGTCTATACT 57.971 37.037 27.63 18.25 42.22 2.12
297 298 8.811378 TGTATGTATGAGCGTATACGTCTATAC 58.189 37.037 25.04 24.75 42.22 1.47
298 299 8.811378 GTGTATGTATGAGCGTATACGTCTATA 58.189 37.037 25.04 16.90 42.22 1.31
299 300 7.332678 TGTGTATGTATGAGCGTATACGTCTAT 59.667 37.037 25.04 17.76 42.22 1.98
300 301 6.646240 TGTGTATGTATGAGCGTATACGTCTA 59.354 38.462 25.04 12.49 42.22 2.59
301 302 5.467735 TGTGTATGTATGAGCGTATACGTCT 59.532 40.000 25.04 21.19 42.22 4.18
302 303 5.682869 TGTGTATGTATGAGCGTATACGTC 58.317 41.667 25.04 19.93 42.22 4.34
303 304 5.678132 TGTGTATGTATGAGCGTATACGT 57.322 39.130 25.04 12.80 42.22 3.57
304 305 8.572976 GTTTATGTGTATGTATGAGCGTATACG 58.427 37.037 20.87 20.87 43.27 3.06
305 306 9.622004 AGTTTATGTGTATGTATGAGCGTATAC 57.378 33.333 6.48 6.48 34.78 1.47
309 310 9.542462 AAATAGTTTATGTGTATGTATGAGCGT 57.458 29.630 0.00 0.00 0.00 5.07
327 328 9.444600 TCTCGAAGGTGCTTATAAAAATAGTTT 57.555 29.630 0.00 0.00 0.00 2.66
328 329 9.099454 CTCTCGAAGGTGCTTATAAAAATAGTT 57.901 33.333 0.00 0.00 0.00 2.24
329 330 8.475639 TCTCTCGAAGGTGCTTATAAAAATAGT 58.524 33.333 0.00 0.00 0.00 2.12
330 331 8.756864 GTCTCTCGAAGGTGCTTATAAAAATAG 58.243 37.037 0.00 0.00 0.00 1.73
331 332 7.709613 GGTCTCTCGAAGGTGCTTATAAAAATA 59.290 37.037 0.00 0.00 0.00 1.40
332 333 6.539103 GGTCTCTCGAAGGTGCTTATAAAAAT 59.461 38.462 0.00 0.00 0.00 1.82
333 334 5.873164 GGTCTCTCGAAGGTGCTTATAAAAA 59.127 40.000 0.00 0.00 0.00 1.94
334 335 5.416947 GGTCTCTCGAAGGTGCTTATAAAA 58.583 41.667 0.00 0.00 0.00 1.52
335 336 4.439700 CGGTCTCTCGAAGGTGCTTATAAA 60.440 45.833 0.00 0.00 0.00 1.40
336 337 3.066342 CGGTCTCTCGAAGGTGCTTATAA 59.934 47.826 0.00 0.00 0.00 0.98
337 338 2.617308 CGGTCTCTCGAAGGTGCTTATA 59.383 50.000 0.00 0.00 0.00 0.98
338 339 1.405821 CGGTCTCTCGAAGGTGCTTAT 59.594 52.381 0.00 0.00 0.00 1.73
339 340 0.809385 CGGTCTCTCGAAGGTGCTTA 59.191 55.000 0.00 0.00 0.00 3.09
340 341 0.894184 TCGGTCTCTCGAAGGTGCTT 60.894 55.000 0.00 0.00 36.12 3.91
341 342 1.303398 TCGGTCTCTCGAAGGTGCT 60.303 57.895 0.00 0.00 36.12 4.40
342 343 1.137825 CTCGGTCTCTCGAAGGTGC 59.862 63.158 0.00 0.00 38.77 5.01
343 344 1.137825 GCTCGGTCTCTCGAAGGTG 59.862 63.158 0.00 0.00 38.77 4.00
344 345 1.001887 AGCTCGGTCTCTCGAAGGT 60.002 57.895 0.00 0.00 38.77 3.50
345 346 1.027255 TCAGCTCGGTCTCTCGAAGG 61.027 60.000 0.00 0.00 38.77 3.46
346 347 0.098025 GTCAGCTCGGTCTCTCGAAG 59.902 60.000 0.00 0.00 38.77 3.79
347 348 0.605589 TGTCAGCTCGGTCTCTCGAA 60.606 55.000 0.00 0.00 38.77 3.71
348 349 1.003718 TGTCAGCTCGGTCTCTCGA 60.004 57.895 0.00 0.00 37.60 4.04
349 350 1.135731 GTGTCAGCTCGGTCTCTCG 59.864 63.158 0.00 0.00 0.00 4.04
350 351 0.814457 ATGTGTCAGCTCGGTCTCTC 59.186 55.000 0.00 0.00 0.00 3.20
351 352 0.814457 GATGTGTCAGCTCGGTCTCT 59.186 55.000 0.00 0.00 0.00 3.10
352 353 0.528017 TGATGTGTCAGCTCGGTCTC 59.472 55.000 0.00 0.00 0.00 3.36
353 354 1.135915 GATGATGTGTCAGCTCGGTCT 59.864 52.381 0.00 0.00 37.76 3.85
354 355 1.565305 GATGATGTGTCAGCTCGGTC 58.435 55.000 0.00 0.00 37.76 4.79
355 356 3.748863 GATGATGTGTCAGCTCGGT 57.251 52.632 0.00 0.00 37.76 4.69
360 361 4.005650 TCCTTTCAAGATGATGTGTCAGC 58.994 43.478 0.00 0.00 41.02 4.26
361 362 5.485620 TCTCCTTTCAAGATGATGTGTCAG 58.514 41.667 0.00 0.00 37.87 3.51
362 363 5.488262 TCTCCTTTCAAGATGATGTGTCA 57.512 39.130 0.00 0.00 39.04 3.58
363 364 6.677431 GCATTCTCCTTTCAAGATGATGTGTC 60.677 42.308 0.00 0.00 0.00 3.67
364 365 5.125097 GCATTCTCCTTTCAAGATGATGTGT 59.875 40.000 0.00 0.00 0.00 3.72
370 371 3.730061 GCACGCATTCTCCTTTCAAGATG 60.730 47.826 0.00 0.00 0.00 2.90
378 379 1.317613 TTGTTGCACGCATTCTCCTT 58.682 45.000 0.00 0.00 0.00 3.36
381 382 2.336554 ACATTGTTGCACGCATTCTC 57.663 45.000 0.00 0.00 0.00 2.87
383 384 3.564511 ACTTACATTGTTGCACGCATTC 58.435 40.909 0.00 0.00 0.00 2.67
390 391 4.460263 AGTCCAAGACTTACATTGTTGCA 58.540 39.130 0.00 0.00 40.28 4.08
407 408 0.764890 CTCACCCCAGTTCAAGTCCA 59.235 55.000 0.00 0.00 0.00 4.02
419 421 0.912486 AGTTATCACCTGCTCACCCC 59.088 55.000 0.00 0.00 0.00 4.95
420 422 1.834263 AGAGTTATCACCTGCTCACCC 59.166 52.381 0.00 0.00 0.00 4.61
425 427 4.140805 AGGAGGATAGAGTTATCACCTGCT 60.141 45.833 0.00 0.00 40.14 4.24
426 428 4.156477 AGGAGGATAGAGTTATCACCTGC 58.844 47.826 0.00 0.00 40.14 4.85
431 433 8.010697 TGGATTGTTAGGAGGATAGAGTTATCA 58.989 37.037 0.00 0.00 37.92 2.15
436 438 5.367060 GGTTGGATTGTTAGGAGGATAGAGT 59.633 44.000 0.00 0.00 0.00 3.24
438 440 5.130477 GTGGTTGGATTGTTAGGAGGATAGA 59.870 44.000 0.00 0.00 0.00 1.98
439 441 5.104527 TGTGGTTGGATTGTTAGGAGGATAG 60.105 44.000 0.00 0.00 0.00 2.08
440 442 4.785914 TGTGGTTGGATTGTTAGGAGGATA 59.214 41.667 0.00 0.00 0.00 2.59
441 443 3.591527 TGTGGTTGGATTGTTAGGAGGAT 59.408 43.478 0.00 0.00 0.00 3.24
452 454 5.829924 GGTATGATCATTCTGTGGTTGGATT 59.170 40.000 14.65 0.00 0.00 3.01
464 466 8.438513 CGACAATGTTCTATGGTATGATCATTC 58.561 37.037 14.65 8.78 33.16 2.67
465 467 8.150296 TCGACAATGTTCTATGGTATGATCATT 58.850 33.333 14.65 0.00 34.73 2.57
469 471 7.386025 CACATCGACAATGTTCTATGGTATGAT 59.614 37.037 0.00 0.00 46.73 2.45
472 474 6.816136 TCACATCGACAATGTTCTATGGTAT 58.184 36.000 0.00 0.00 46.73 2.73
473 475 6.215495 TCACATCGACAATGTTCTATGGTA 57.785 37.500 0.00 0.00 46.73 3.25
474 476 5.084818 TCACATCGACAATGTTCTATGGT 57.915 39.130 0.00 0.00 46.73 3.55
477 479 8.498054 AAAAGATCACATCGACAATGTTCTAT 57.502 30.769 0.00 0.00 46.73 1.98
489 491 8.380644 ACTCGTACAAAATAAAAGATCACATCG 58.619 33.333 0.00 0.00 0.00 3.84
503 505 5.820947 AGGTGAAAACTGACTCGTACAAAAT 59.179 36.000 0.00 0.00 0.00 1.82
504 506 5.180271 AGGTGAAAACTGACTCGTACAAAA 58.820 37.500 0.00 0.00 0.00 2.44
505 507 4.761975 AGGTGAAAACTGACTCGTACAAA 58.238 39.130 0.00 0.00 0.00 2.83
506 508 4.395959 AGGTGAAAACTGACTCGTACAA 57.604 40.909 0.00 0.00 0.00 2.41
507 509 5.717078 ATAGGTGAAAACTGACTCGTACA 57.283 39.130 0.00 0.00 0.00 2.90
511 513 5.388475 CGTGAAATAGGTGAAAACTGACTCG 60.388 44.000 0.00 0.00 0.00 4.18
512 514 5.465724 ACGTGAAATAGGTGAAAACTGACTC 59.534 40.000 0.00 0.00 0.00 3.36
594 596 9.634163 ATCCCGTACAAAACTTCAAAATAAATC 57.366 29.630 0.00 0.00 0.00 2.17
600 602 9.819267 AAATAAATCCCGTACAAAACTTCAAAA 57.181 25.926 0.00 0.00 0.00 2.44
615 618 9.297586 GCCTAAAGAAACTTAAAATAAATCCCG 57.702 33.333 0.00 0.00 0.00 5.14
634 637 2.093447 AGTCCCGACATCTTGCCTAAAG 60.093 50.000 0.00 0.00 37.22 1.85
637 640 1.112113 GAGTCCCGACATCTTGCCTA 58.888 55.000 0.00 0.00 0.00 3.93
638 641 1.617947 GGAGTCCCGACATCTTGCCT 61.618 60.000 0.00 0.00 0.00 4.75
640 643 4.522971 GGAGTCCCGACATCTTGC 57.477 61.111 0.00 0.00 0.00 4.01
653 656 0.320374 TTTGCAGTTCGGATCGGAGT 59.680 50.000 2.99 0.00 0.00 3.85
750 755 1.134371 GGATGGGGGAAAACGAGAGAG 60.134 57.143 0.00 0.00 0.00 3.20
809 814 0.386858 CGTGACCGTGGTCTACTGTG 60.387 60.000 19.17 0.59 44.80 3.66
861 866 4.747529 GTTTCTACGGCCGGCGGT 62.748 66.667 37.14 37.14 0.00 5.68
1218 1227 1.268539 CCAACACTGAAACCACGAAGC 60.269 52.381 0.00 0.00 0.00 3.86
1222 1231 0.380378 CACCCAACACTGAAACCACG 59.620 55.000 0.00 0.00 0.00 4.94
1361 1370 8.837099 TTTCAACTCCATACCCATGAATAATT 57.163 30.769 0.00 0.00 33.67 1.40
1373 1382 3.763897 AGGGCACAATTTCAACTCCATAC 59.236 43.478 0.00 0.00 0.00 2.39
1374 1383 4.046286 AGGGCACAATTTCAACTCCATA 57.954 40.909 0.00 0.00 0.00 2.74
1399 1408 3.754219 TCCAAATCCCATGGATGTCAA 57.246 42.857 15.22 0.00 42.27 3.18
1464 1473 2.887568 GCATCACCTCTGACGCGG 60.888 66.667 12.47 0.00 0.00 6.46
1503 1512 8.390354 CAGAACGATAAAGATCAAATAGCACAA 58.610 33.333 0.00 0.00 31.78 3.33
1507 1516 8.604035 TGAACAGAACGATAAAGATCAAATAGC 58.396 33.333 0.00 0.00 31.78 2.97
1518 1527 3.950397 AGGCCATGAACAGAACGATAAA 58.050 40.909 5.01 0.00 0.00 1.40
1585 1595 5.095490 GTGACCTTGTCAAACTTTTCTGTG 58.905 41.667 0.00 0.00 44.49 3.66
1737 1747 1.813513 ATGGTGCGTGGAGAGAAAAG 58.186 50.000 0.00 0.00 0.00 2.27
1805 1815 6.500589 TGCAGGTAGATAAAGCCTAGAATT 57.499 37.500 0.00 0.00 0.00 2.17
1881 5677 3.390639 GAGGACCATCTGAATCTGGACAT 59.609 47.826 2.90 0.00 36.35 3.06
2138 5934 3.135530 ACTCCCTTCATACATTCAGGAGC 59.864 47.826 3.12 0.00 42.59 4.70
2143 5939 5.013079 ACACTTCACTCCCTTCATACATTCA 59.987 40.000 0.00 0.00 0.00 2.57
2158 5954 9.003658 CATCTTGTTATCCTTTTACACTTCACT 57.996 33.333 0.00 0.00 0.00 3.41
2163 5959 7.944729 ATGCATCTTGTTATCCTTTTACACT 57.055 32.000 0.00 0.00 0.00 3.55
2164 5960 7.489113 CCAATGCATCTTGTTATCCTTTTACAC 59.511 37.037 0.00 0.00 0.00 2.90
2308 6104 5.098893 CCACGTGAGAAATTCAAAACAACA 58.901 37.500 19.30 0.00 37.61 3.33
2498 6294 3.679389 CACAGTAAAGAACCTCCTGCAT 58.321 45.455 0.00 0.00 0.00 3.96
2635 6431 8.424133 AGATTGCCTGAAAGTAAAGAACATTTT 58.576 29.630 0.00 0.00 0.00 1.82
2760 6556 9.844790 ATACAACATTGTACAAGTTTCATGATG 57.155 29.630 14.65 12.60 45.47 3.07
2765 6561 8.678199 TGTCAATACAACATTGTACAAGTTTCA 58.322 29.630 14.65 8.44 45.47 2.69
2880 6676 4.071423 TGCACACGCCTATATTTGCATAT 58.929 39.130 0.00 0.00 35.13 1.78
2885 6681 2.033747 CGAGTGCACACGCCTATATTTG 60.034 50.000 23.11 0.00 37.32 2.32
2918 6714 7.499895 ACAAAAGATGGCAAATGAGAAACAATT 59.500 29.630 0.00 0.00 0.00 2.32
3177 6973 1.202290 GGGTTGGCATATTTGTCAGCG 60.202 52.381 0.00 0.00 39.34 5.18
3260 7056 7.066284 AGTCAATTCAACATATACTCTTGGCAC 59.934 37.037 0.00 0.00 0.00 5.01
3397 7207 0.179073 CAACCTGACTATCTGGGCCG 60.179 60.000 0.00 0.00 39.50 6.13
3456 7266 2.810274 TGCTTGCTAACTTCTGCTTCAG 59.190 45.455 0.00 0.00 0.00 3.02
3555 7365 7.770801 TGACATGAACGAATAATTACCTCAG 57.229 36.000 0.00 0.00 0.00 3.35
3642 7479 4.916183 ACTCCTTTTAGAAGCAAGCATCT 58.084 39.130 5.11 5.11 0.00 2.90
3643 7480 5.643777 TGTACTCCTTTTAGAAGCAAGCATC 59.356 40.000 0.00 0.00 0.00 3.91
3644 7481 5.412904 GTGTACTCCTTTTAGAAGCAAGCAT 59.587 40.000 0.00 0.00 0.00 3.79
3645 7482 4.755123 GTGTACTCCTTTTAGAAGCAAGCA 59.245 41.667 0.00 0.00 0.00 3.91
3680 7517 3.362831 TCGCGACTTCAAATTTCTACGAC 59.637 43.478 3.71 0.00 0.00 4.34
3902 7739 3.733337 AGAGTGGGATGCGAATCAATAC 58.267 45.455 5.57 0.88 0.00 1.89
3904 7741 3.287867 AAGAGTGGGATGCGAATCAAT 57.712 42.857 5.57 0.00 0.00 2.57
3913 7750 3.310774 CGAAGTATGCAAAGAGTGGGATG 59.689 47.826 0.00 0.00 0.00 3.51
4013 7852 2.967397 TGGTTCGTCCCACTAGCG 59.033 61.111 0.00 0.00 34.77 4.26
4082 7921 6.174720 ACAGTGATGTACTTGAGGAAAGAA 57.825 37.500 0.00 0.00 37.60 2.52
4142 7981 0.174845 CCATCTTTGCGACGTAGGGA 59.825 55.000 0.00 0.00 0.00 4.20
4301 8140 4.137543 GCAAGTCCCATCCGATAAGAATT 58.862 43.478 0.00 0.00 0.00 2.17
4305 8144 1.140852 TGGCAAGTCCCATCCGATAAG 59.859 52.381 0.00 0.00 0.00 1.73
4406 8245 2.621526 TCTCAACGCACAAGAGACTGTA 59.378 45.455 0.00 0.00 33.75 2.74
4408 8247 2.057316 CTCTCAACGCACAAGAGACTG 58.943 52.381 0.00 0.00 39.09 3.51
4433 8272 2.024414 GGCACCTATTTCATCCGCTTT 58.976 47.619 0.00 0.00 0.00 3.51
4436 8275 1.609208 ATGGCACCTATTTCATCCGC 58.391 50.000 0.00 0.00 0.00 5.54
4437 8276 4.761739 ACATTATGGCACCTATTTCATCCG 59.238 41.667 0.00 0.00 0.00 4.18
4438 8277 6.655078 AACATTATGGCACCTATTTCATCC 57.345 37.500 0.00 0.00 0.00 3.51
4439 8278 8.819974 CAAAAACATTATGGCACCTATTTCATC 58.180 33.333 0.00 0.00 0.00 2.92
4440 8279 8.320617 ACAAAAACATTATGGCACCTATTTCAT 58.679 29.630 0.00 0.00 0.00 2.57
4442 8281 8.546597 AACAAAAACATTATGGCACCTATTTC 57.453 30.769 0.00 0.00 0.00 2.17
4443 8282 9.430623 GTAACAAAAACATTATGGCACCTATTT 57.569 29.630 0.00 0.00 0.00 1.40
4444 8283 8.589338 TGTAACAAAAACATTATGGCACCTATT 58.411 29.630 0.00 0.00 0.00 1.73
4468 8307 9.941325 TTGCCACAAGATCAAAATATTATTTGT 57.059 25.926 2.48 0.00 40.40 2.83
4472 8311 9.550406 CCATTTGCCACAAGATCAAAATATTAT 57.450 29.630 0.00 0.00 34.00 1.28
4473 8312 7.495279 GCCATTTGCCACAAGATCAAAATATTA 59.505 33.333 0.00 0.00 34.00 0.98
4474 8313 6.316890 GCCATTTGCCACAAGATCAAAATATT 59.683 34.615 0.00 0.00 34.00 1.28
4475 8314 5.818857 GCCATTTGCCACAAGATCAAAATAT 59.181 36.000 0.00 0.00 34.00 1.28
4476 8315 5.046448 AGCCATTTGCCACAAGATCAAAATA 60.046 36.000 0.00 0.00 42.71 1.40
4477 8316 4.004982 GCCATTTGCCACAAGATCAAAAT 58.995 39.130 0.00 0.00 34.00 1.82
4478 8317 3.071312 AGCCATTTGCCACAAGATCAAAA 59.929 39.130 0.00 0.00 42.71 2.44
4479 8318 2.633967 AGCCATTTGCCACAAGATCAAA 59.366 40.909 0.00 0.00 42.71 2.69
4480 8319 2.250031 AGCCATTTGCCACAAGATCAA 58.750 42.857 0.00 0.00 42.71 2.57
4481 8320 1.927487 AGCCATTTGCCACAAGATCA 58.073 45.000 0.00 0.00 42.71 2.92
4482 8321 2.223665 GCTAGCCATTTGCCACAAGATC 60.224 50.000 2.29 0.00 42.71 2.75
4483 8322 1.753073 GCTAGCCATTTGCCACAAGAT 59.247 47.619 2.29 0.00 42.71 2.40
4484 8323 1.176527 GCTAGCCATTTGCCACAAGA 58.823 50.000 2.29 0.00 42.71 3.02
4485 8324 0.889994 TGCTAGCCATTTGCCACAAG 59.110 50.000 13.29 0.00 42.71 3.16
4486 8325 0.889994 CTGCTAGCCATTTGCCACAA 59.110 50.000 13.29 0.00 42.71 3.33
4487 8326 0.038021 TCTGCTAGCCATTTGCCACA 59.962 50.000 13.29 0.00 42.71 4.17
4488 8327 1.176527 TTCTGCTAGCCATTTGCCAC 58.823 50.000 13.29 0.00 42.71 5.01
4489 8328 1.752498 CATTCTGCTAGCCATTTGCCA 59.248 47.619 13.29 0.00 42.71 4.92
4490 8329 1.537562 GCATTCTGCTAGCCATTTGCC 60.538 52.381 13.29 0.00 40.96 4.52
4491 8330 1.849097 GCATTCTGCTAGCCATTTGC 58.151 50.000 13.29 12.61 40.96 3.68
4497 8336 0.250252 GAGAGGGCATTCTGCTAGCC 60.250 60.000 13.29 0.00 44.28 3.93
4498 8337 0.758123 AGAGAGGGCATTCTGCTAGC 59.242 55.000 8.10 8.10 44.28 3.42
4499 8338 2.297033 GAGAGAGAGGGCATTCTGCTAG 59.703 54.545 0.00 0.00 44.28 3.42
4500 8339 2.091389 AGAGAGAGAGGGCATTCTGCTA 60.091 50.000 0.00 0.00 44.28 3.49
4501 8340 1.122227 GAGAGAGAGGGCATTCTGCT 58.878 55.000 0.00 0.00 44.28 4.24
4502 8341 1.069049 GAGAGAGAGAGGGCATTCTGC 59.931 57.143 0.00 0.00 44.08 4.26
4503 8342 2.624838 GAGAGAGAGAGAGGGCATTCTG 59.375 54.545 0.00 0.00 0.00 3.02
4504 8343 2.515429 AGAGAGAGAGAGAGGGCATTCT 59.485 50.000 0.00 0.00 0.00 2.40
4505 8344 2.887152 GAGAGAGAGAGAGAGGGCATTC 59.113 54.545 0.00 0.00 0.00 2.67
4506 8345 2.515429 AGAGAGAGAGAGAGAGGGCATT 59.485 50.000 0.00 0.00 0.00 3.56
4507 8346 2.107204 GAGAGAGAGAGAGAGAGGGCAT 59.893 54.545 0.00 0.00 0.00 4.40
4508 8347 1.490490 GAGAGAGAGAGAGAGAGGGCA 59.510 57.143 0.00 0.00 0.00 5.36
4509 8348 1.771255 AGAGAGAGAGAGAGAGAGGGC 59.229 57.143 0.00 0.00 0.00 5.19
4510 8349 2.105477 CCAGAGAGAGAGAGAGAGAGGG 59.895 59.091 0.00 0.00 0.00 4.30
4511 8350 3.041211 TCCAGAGAGAGAGAGAGAGAGG 58.959 54.545 0.00 0.00 0.00 3.69
4512 8351 4.346127 TGATCCAGAGAGAGAGAGAGAGAG 59.654 50.000 0.00 0.00 0.00 3.20
4528 8367 0.883814 GCCGGCTTCTGATGATCCAG 60.884 60.000 22.15 0.00 35.55 3.86
4529 8368 1.146930 GCCGGCTTCTGATGATCCA 59.853 57.895 22.15 0.00 0.00 3.41
4530 8369 0.883814 CTGCCGGCTTCTGATGATCC 60.884 60.000 29.70 0.00 0.00 3.36
4531 8370 0.105593 TCTGCCGGCTTCTGATGATC 59.894 55.000 29.70 0.00 0.00 2.92
4532 8371 0.179062 GTCTGCCGGCTTCTGATGAT 60.179 55.000 29.70 0.00 0.00 2.45
4533 8372 1.219124 GTCTGCCGGCTTCTGATGA 59.781 57.895 29.70 10.99 0.00 2.92
4534 8373 0.674581 TTGTCTGCCGGCTTCTGATG 60.675 55.000 29.70 8.80 0.00 3.07
4535 8374 0.036732 TTTGTCTGCCGGCTTCTGAT 59.963 50.000 29.70 0.00 0.00 2.90
4536 8375 0.179032 TTTTGTCTGCCGGCTTCTGA 60.179 50.000 29.70 17.07 0.00 3.27
4537 8376 0.667993 TTTTTGTCTGCCGGCTTCTG 59.332 50.000 29.70 14.96 0.00 3.02
4538 8377 1.270550 CATTTTTGTCTGCCGGCTTCT 59.729 47.619 29.70 0.00 0.00 2.85
4539 8378 1.000274 ACATTTTTGTCTGCCGGCTTC 60.000 47.619 29.70 17.62 0.00 3.86
4540 8379 1.000274 GACATTTTTGTCTGCCGGCTT 60.000 47.619 29.70 0.00 36.01 4.35
4541 8380 0.598065 GACATTTTTGTCTGCCGGCT 59.402 50.000 29.70 1.03 36.01 5.52
4542 8381 0.313672 TGACATTTTTGTCTGCCGGC 59.686 50.000 22.73 22.73 39.41 6.13
4543 8382 2.728846 CGATGACATTTTTGTCTGCCGG 60.729 50.000 0.00 0.00 39.41 6.13
4544 8383 2.159430 TCGATGACATTTTTGTCTGCCG 59.841 45.455 7.55 7.88 39.41 5.69
4545 8384 3.829886 TCGATGACATTTTTGTCTGCC 57.170 42.857 7.55 0.00 39.41 4.85
4546 8385 4.973396 TCATCGATGACATTTTTGTCTGC 58.027 39.130 23.99 0.00 39.41 4.26
4547 8386 6.312180 TCTCTCATCGATGACATTTTTGTCTG 59.688 38.462 23.99 9.91 39.41 3.51
4548 8387 6.401394 TCTCTCATCGATGACATTTTTGTCT 58.599 36.000 23.99 0.00 39.41 3.41
4549 8388 6.238049 CCTCTCTCATCGATGACATTTTTGTC 60.238 42.308 23.99 0.00 39.15 3.18
4550 8389 5.583854 CCTCTCTCATCGATGACATTTTTGT 59.416 40.000 23.99 0.00 32.50 2.83
4551 8390 5.583854 ACCTCTCTCATCGATGACATTTTTG 59.416 40.000 23.99 12.52 32.50 2.44
4552 8391 5.738909 ACCTCTCTCATCGATGACATTTTT 58.261 37.500 23.99 5.11 32.50 1.94
4553 8392 5.350504 ACCTCTCTCATCGATGACATTTT 57.649 39.130 23.99 4.60 32.50 1.82
4554 8393 4.202202 GGACCTCTCTCATCGATGACATTT 60.202 45.833 23.99 6.60 32.50 2.32
4555 8394 3.320541 GGACCTCTCTCATCGATGACATT 59.679 47.826 23.99 5.56 32.50 2.71
4556 8395 2.890311 GGACCTCTCTCATCGATGACAT 59.110 50.000 23.99 6.07 32.50 3.06
4557 8396 2.302260 GGACCTCTCTCATCGATGACA 58.698 52.381 23.99 13.54 32.50 3.58
4558 8397 1.611491 GGGACCTCTCTCATCGATGAC 59.389 57.143 23.99 12.14 32.50 3.06
4559 8398 1.815795 CGGGACCTCTCTCATCGATGA 60.816 57.143 25.80 25.80 35.16 2.92
4579 8418 5.340439 AGTAGTACAATGCTACAGTTCCC 57.660 43.478 2.52 0.00 40.76 3.97
4590 8430 5.232202 CGGTCTGCAATGTAGTAGTACAATG 59.768 44.000 17.91 17.91 42.54 2.82
4595 8435 3.066342 GCTCGGTCTGCAATGTAGTAGTA 59.934 47.826 0.00 0.00 0.00 1.82
4636 8476 6.573289 GCTTCTATTATGGTGATCTCCATCGT 60.573 42.308 28.13 20.46 45.67 3.73
4681 8521 1.182667 TAGTGTCAGGGTCACCATCG 58.817 55.000 0.00 0.00 40.13 3.84
4699 8539 1.135139 GACAGCGAGCCTGAGATGTTA 59.865 52.381 0.00 0.00 44.64 2.41
4733 8574 2.416162 CGAGGACCTCTTCTTTTCTCCG 60.416 54.545 19.39 0.00 0.00 4.63
4740 8581 0.892063 GTCAGCGAGGACCTCTTCTT 59.108 55.000 19.39 0.00 0.00 2.52
4755 8596 5.125578 TGCAGTATCTTAGGTGTGTAGTCAG 59.874 44.000 0.00 0.00 0.00 3.51
4761 8602 6.237901 TGAAAATGCAGTATCTTAGGTGTGT 58.762 36.000 0.00 0.00 0.00 3.72
4765 8606 7.653713 CGAGTATGAAAATGCAGTATCTTAGGT 59.346 37.037 0.00 0.00 0.00 3.08
4792 8633 4.827284 CCGGTAAATTTGGCATCTAGGAAT 59.173 41.667 0.00 0.00 0.00 3.01
4801 8642 2.296073 AGGTTCCGGTAAATTTGGCA 57.704 45.000 0.00 0.00 0.00 4.92
4840 8681 6.420913 TCTGAACTTAGGCTTCTGTACTTT 57.579 37.500 0.00 0.00 0.00 2.66
4841 8682 6.613153 ATCTGAACTTAGGCTTCTGTACTT 57.387 37.500 0.00 0.00 0.00 2.24
4843 8684 6.472808 CGTAATCTGAACTTAGGCTTCTGTAC 59.527 42.308 0.00 0.00 0.00 2.90
4844 8685 6.405508 CCGTAATCTGAACTTAGGCTTCTGTA 60.406 42.308 0.00 0.00 0.00 2.74
4860 8727 3.192844 ACACAGTACACCTCCGTAATCTG 59.807 47.826 0.00 0.00 0.00 2.90
4873 8740 4.587262 ACATCACTCCTTGTACACAGTACA 59.413 41.667 5.94 5.94 0.00 2.90
4874 8741 5.047943 AGACATCACTCCTTGTACACAGTAC 60.048 44.000 0.00 0.51 0.00 2.73
4875 8742 5.077564 AGACATCACTCCTTGTACACAGTA 58.922 41.667 0.00 0.00 0.00 2.74
4876 8743 3.898123 AGACATCACTCCTTGTACACAGT 59.102 43.478 0.00 0.00 0.00 3.55
4877 8744 4.527509 AGACATCACTCCTTGTACACAG 57.472 45.455 0.00 0.00 0.00 3.66
4927 8796 5.407387 AGTTTTTGATCGTACGTGTAGCATT 59.593 36.000 16.05 0.00 0.00 3.56
5040 8910 0.531974 ACGACACTTTGCGATGGTGT 60.532 50.000 11.50 11.50 45.26 4.16
5047 8917 1.154908 GTGCGTACGACACTTTGCG 60.155 57.895 25.37 0.00 35.12 4.85
5050 8920 5.600908 AAATAATGTGCGTACGACACTTT 57.399 34.783 29.35 28.85 38.86 2.66
5051 8921 5.600908 AAAATAATGTGCGTACGACACTT 57.399 34.783 29.35 24.01 38.86 3.16
5097 8967 4.953579 GGAACATAGAGGTGAGAGAAGAGT 59.046 45.833 0.00 0.00 0.00 3.24
5108 8978 2.915869 TGTCCAAGGGAACATAGAGGT 58.084 47.619 0.00 0.00 31.38 3.85
5110 8980 4.760530 TCATGTCCAAGGGAACATAGAG 57.239 45.455 0.00 0.00 31.38 2.43
5115 8985 2.441375 TGTCTTCATGTCCAAGGGAACA 59.559 45.455 0.00 0.00 31.38 3.18
5133 9003 2.403252 ATCCCGTTTGAGTCCATGTC 57.597 50.000 0.00 0.00 0.00 3.06
5158 9028 6.239317 CCTTAGATAGATCCCGTTTGACATCA 60.239 42.308 0.00 0.00 0.00 3.07
5171 9041 3.562567 ACGCTTCGCCTTAGATAGATC 57.437 47.619 0.00 0.00 0.00 2.75
5173 9043 4.906065 TTTACGCTTCGCCTTAGATAGA 57.094 40.909 0.00 0.00 0.00 1.98
5174 9044 5.041940 AGTTTTACGCTTCGCCTTAGATAG 58.958 41.667 0.00 0.00 0.00 2.08
5175 9045 5.002464 AGTTTTACGCTTCGCCTTAGATA 57.998 39.130 0.00 0.00 0.00 1.98
5177 9047 3.248266 GAGTTTTACGCTTCGCCTTAGA 58.752 45.455 0.00 0.00 0.00 2.10
5178 9048 2.991190 TGAGTTTTACGCTTCGCCTTAG 59.009 45.455 0.00 0.00 0.00 2.18
5179 9049 3.029320 TGAGTTTTACGCTTCGCCTTA 57.971 42.857 0.00 0.00 0.00 2.69
5180 9050 1.873698 TGAGTTTTACGCTTCGCCTT 58.126 45.000 0.00 0.00 0.00 4.35
5181 9051 2.094762 ATGAGTTTTACGCTTCGCCT 57.905 45.000 0.00 0.00 0.00 5.52
5182 9052 2.505866 CAATGAGTTTTACGCTTCGCC 58.494 47.619 0.00 0.00 0.00 5.54
5183 9053 2.095919 ACCAATGAGTTTTACGCTTCGC 60.096 45.455 0.00 0.00 0.00 4.70
5184 9054 3.806316 ACCAATGAGTTTTACGCTTCG 57.194 42.857 0.00 0.00 0.00 3.79
5185 9055 5.390567 CCACTACCAATGAGTTTTACGCTTC 60.391 44.000 0.00 0.00 0.00 3.86
5186 9056 4.454504 CCACTACCAATGAGTTTTACGCTT 59.545 41.667 0.00 0.00 0.00 4.68
5187 9057 4.000988 CCACTACCAATGAGTTTTACGCT 58.999 43.478 0.00 0.00 0.00 5.07
5188 9058 3.749609 ACCACTACCAATGAGTTTTACGC 59.250 43.478 0.00 0.00 0.00 4.42
5189 9059 4.090930 CGACCACTACCAATGAGTTTTACG 59.909 45.833 0.00 0.00 0.00 3.18
5190 9060 5.232463 TCGACCACTACCAATGAGTTTTAC 58.768 41.667 0.00 0.00 0.00 2.01
5191 9061 5.471556 TCGACCACTACCAATGAGTTTTA 57.528 39.130 0.00 0.00 0.00 1.52
5192 9062 4.345859 TCGACCACTACCAATGAGTTTT 57.654 40.909 0.00 0.00 0.00 2.43
5193 9063 4.345859 TTCGACCACTACCAATGAGTTT 57.654 40.909 0.00 0.00 0.00 2.66
5194 9064 4.345859 TTTCGACCACTACCAATGAGTT 57.654 40.909 0.00 0.00 0.00 3.01
5195 9065 4.345859 TTTTCGACCACTACCAATGAGT 57.654 40.909 0.00 0.00 0.00 3.41
5196 9066 5.411361 TGAATTTTCGACCACTACCAATGAG 59.589 40.000 0.00 0.00 0.00 2.90
5197 9067 5.309638 TGAATTTTCGACCACTACCAATGA 58.690 37.500 0.00 0.00 0.00 2.57
5198 9068 5.411361 TCTGAATTTTCGACCACTACCAATG 59.589 40.000 0.00 0.00 0.00 2.82
5199 9069 5.556915 TCTGAATTTTCGACCACTACCAAT 58.443 37.500 0.00 0.00 0.00 3.16
5200 9070 4.963373 TCTGAATTTTCGACCACTACCAA 58.037 39.130 0.00 0.00 0.00 3.67
5201 9071 4.562757 CCTCTGAATTTTCGACCACTACCA 60.563 45.833 0.00 0.00 0.00 3.25
5202 9072 3.933332 CCTCTGAATTTTCGACCACTACC 59.067 47.826 0.00 0.00 0.00 3.18
5203 9073 3.371285 GCCTCTGAATTTTCGACCACTAC 59.629 47.826 0.00 0.00 0.00 2.73
5204 9074 3.007506 TGCCTCTGAATTTTCGACCACTA 59.992 43.478 0.00 0.00 0.00 2.74
5205 9075 2.224523 TGCCTCTGAATTTTCGACCACT 60.225 45.455 0.00 0.00 0.00 4.00
5206 9076 2.095718 GTGCCTCTGAATTTTCGACCAC 60.096 50.000 0.00 0.00 0.00 4.16
5226 9096 1.279271 CCTGGCTACCACTAAGCTTGT 59.721 52.381 9.86 2.27 39.97 3.16
5233 9103 1.009060 TGGAATCCCTGGCTACCACTA 59.991 52.381 0.00 0.00 0.00 2.74
5240 9110 1.213926 GAAGTCATGGAATCCCTGGCT 59.786 52.381 5.84 5.84 30.41 4.75
5244 9114 1.849039 CCCTGAAGTCATGGAATCCCT 59.151 52.381 0.00 0.00 34.09 4.20
5247 9117 3.356529 ACACCCTGAAGTCATGGAATC 57.643 47.619 9.33 0.00 35.54 2.52
5272 9142 1.812922 CAGCGCCAACAGAGCCTAG 60.813 63.158 2.29 0.00 43.29 3.02
5276 9146 3.606065 CTTGCAGCGCCAACAGAGC 62.606 63.158 2.29 0.00 42.45 4.09
5287 9157 2.929398 GAGAAGTCTCTAAGCTTGCAGC 59.071 50.000 9.86 1.65 39.64 5.25
5289 9159 3.576118 AGTGAGAAGTCTCTAAGCTTGCA 59.424 43.478 9.86 0.00 43.25 4.08
5293 9163 6.014012 AGGTTTAGTGAGAAGTCTCTAAGCT 58.986 40.000 9.63 9.66 43.25 3.74
5298 9168 3.835395 CCCAGGTTTAGTGAGAAGTCTCT 59.165 47.826 9.63 0.00 43.25 3.10
5358 9228 1.302192 TCCTCCAAACGCCCTTTCG 60.302 57.895 0.00 0.00 0.00 3.46
5360 9230 0.822121 GTGTCCTCCAAACGCCCTTT 60.822 55.000 0.00 0.00 0.00 3.11
5376 9246 2.035066 GCATTGCCTGAGAAAACTGTGT 59.965 45.455 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.