Multiple sequence alignment - TraesCS2A01G291700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G291700 chr2A 100.000 4775 0 0 1 4775 502621299 502626073 0.000000e+00 8818.0
1 TraesCS2A01G291700 chr2A 77.778 333 56 14 331 653 753421868 753421544 6.800000e-44 189.0
2 TraesCS2A01G291700 chr2A 100.000 48 0 0 5096 5143 502626394 502626441 7.090000e-14 89.8
3 TraesCS2A01G291700 chr2D 96.711 1733 38 7 2785 4514 371921842 371923558 0.000000e+00 2867.0
4 TraesCS2A01G291700 chr2D 96.257 1309 28 8 645 1938 371919430 371920732 0.000000e+00 2126.0
5 TraesCS2A01G291700 chr2D 95.904 415 14 1 1931 2342 371920878 371921292 0.000000e+00 669.0
6 TraesCS2A01G291700 chr2D 91.162 396 22 4 2341 2735 371921334 371921717 4.560000e-145 525.0
7 TraesCS2A01G291700 chr2D 86.405 331 42 3 1 329 371919100 371919429 4.900000e-95 359.0
8 TraesCS2A01G291700 chr2D 87.097 217 26 2 435 650 445189794 445190009 1.430000e-60 244.0
9 TraesCS2A01G291700 chr2B 93.941 1733 63 16 2785 4514 441077659 441079352 0.000000e+00 2580.0
10 TraesCS2A01G291700 chr2B 95.346 1504 35 10 630 2110 441075467 441076958 0.000000e+00 2357.0
11 TraesCS2A01G291700 chr2B 86.630 546 42 11 2108 2630 441077070 441077607 4.470000e-160 575.0
12 TraesCS2A01G291700 chr2B 81.979 283 46 5 43 322 540971944 540972224 8.610000e-58 235.0
13 TraesCS2A01G291700 chr2B 78.277 267 31 17 4508 4766 441079386 441079633 4.150000e-31 147.0
14 TraesCS2A01G291700 chr4D 81.609 435 65 12 42 469 416431590 416432016 3.810000e-91 346.0
15 TraesCS2A01G291700 chr4D 84.295 312 42 6 330 634 328542816 328542505 1.080000e-76 298.0
16 TraesCS2A01G291700 chr4D 82.727 330 44 10 330 650 455756531 455756856 1.090000e-71 281.0
17 TraesCS2A01G291700 chr4D 86.667 150 13 4 326 469 8699390 8699242 5.330000e-35 159.0
18 TraesCS2A01G291700 chr4D 84.940 166 14 5 315 469 227873975 227873810 1.920000e-34 158.0
19 TraesCS2A01G291700 chr7D 85.627 327 40 7 329 650 577703892 577704216 2.290000e-88 337.0
20 TraesCS2A01G291700 chr5D 87.059 255 31 2 45 298 480467545 480467292 2.340000e-73 287.0
21 TraesCS2A01G291700 chr5D 84.266 286 39 6 27 310 249158445 249158726 1.820000e-69 274.0
22 TraesCS2A01G291700 chr3D 83.596 317 41 8 330 639 560940803 560940491 2.340000e-73 287.0
23 TraesCS2A01G291700 chr3D 87.059 255 31 2 56 309 603709272 603709019 2.340000e-73 287.0
24 TraesCS2A01G291700 chr3D 82.229 332 45 11 327 651 163116382 163116706 1.820000e-69 274.0
25 TraesCS2A01G291700 chr6A 85.348 273 36 3 38 309 70420806 70420537 3.920000e-71 279.0
26 TraesCS2A01G291700 chr6A 87.013 154 14 3 322 469 481340416 481340569 8.860000e-38 169.0
27 TraesCS2A01G291700 chr1B 85.502 269 37 2 45 312 58253325 58253058 3.920000e-71 279.0
28 TraesCS2A01G291700 chr5A 85.091 275 37 3 41 312 654405598 654405871 1.410000e-70 278.0
29 TraesCS2A01G291700 chr5A 79.743 311 52 7 329 632 671167004 671166698 1.120000e-51 215.0
30 TraesCS2A01G291700 chr1D 85.660 265 36 2 46 309 256106858 256107121 1.410000e-70 278.0
31 TraesCS2A01G291700 chr4A 81.957 327 53 6 330 651 606409831 606410156 6.560000e-69 272.0
32 TraesCS2A01G291700 chr6D 83.214 280 43 4 46 322 466013098 466012820 2.380000e-63 254.0
33 TraesCS2A01G291700 chr6D 84.581 227 27 6 435 657 41542457 41542679 8.670000e-53 219.0
34 TraesCS2A01G291700 chr6D 86.275 153 16 2 322 469 289352693 289352845 1.480000e-35 161.0
35 TraesCS2A01G291700 chr3B 80.826 339 47 16 326 653 117922706 117922375 3.070000e-62 250.0
36 TraesCS2A01G291700 chr5B 79.394 330 52 13 328 650 523569521 523569841 8.670000e-53 219.0
37 TraesCS2A01G291700 chr7B 82.888 187 26 6 329 509 497576931 497576745 4.120000e-36 163.0
38 TraesCS2A01G291700 chr6B 85.185 162 17 4 315 469 280093156 280092995 5.330000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G291700 chr2A 502621299 502626441 5142 False 4453.90 8818 100.0000 1 5143 2 chr2A.!!$F1 5142
1 TraesCS2A01G291700 chr2D 371919100 371923558 4458 False 1309.20 2867 93.2878 1 4514 5 chr2D.!!$F2 4513
2 TraesCS2A01G291700 chr2B 441075467 441079633 4166 False 1414.75 2580 88.5485 630 4766 4 chr2B.!!$F2 4136

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.103208 GCTGGCTGCATACGTACTCT 59.897 55.000 11.80 0.0 42.31 3.24 F
702 707 1.029681 AAACTTCAAACGGGCCTGAC 58.970 50.000 21.41 0.0 0.00 3.51 F
881 897 1.072173 TCCCCATCATCATAACCTGCG 59.928 52.381 0.00 0.0 0.00 5.18 F
882 898 1.202806 CCCCATCATCATAACCTGCGT 60.203 52.381 0.00 0.0 0.00 5.24 F
2404 2769 1.609208 GCTGGTCCAATCTGTGTGTT 58.391 50.000 0.00 0.0 0.00 3.32 F
3329 3774 0.244994 GACACGAGTCCAGACTGCAT 59.755 55.000 4.74 0.0 42.66 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1387 0.668535 CCATGTATGCGTCGAGGAGA 59.331 55.000 9.75 0.0 0.00 3.71 R
2297 2596 2.892852 TCTTATGCAAGCAGCCAAACTT 59.107 40.909 0.00 0.0 44.83 2.66 R
2754 3180 0.927767 ACTGTTTGGTTACACCCCCA 59.072 50.000 0.00 0.0 37.50 4.96 R
2760 3186 3.071023 CCAGAGAGGACTGTTTGGTTACA 59.929 47.826 0.00 0.0 41.22 2.41 R
3530 3975 3.440173 GCAAGCTAAATACTGAACAGGCA 59.560 43.478 6.76 0.0 0.00 4.75 R
4594 5079 0.179000 CCAGACTGGGACTACATGCC 59.821 60.000 14.26 0.0 39.94 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.893727 CCTGATGGAGGTAGTACAAAATAAAAG 58.106 37.037 2.06 0.00 37.02 2.27
35 36 6.657541 TGGAGGTAGTACAAAATAAAAGCTGG 59.342 38.462 2.06 0.00 0.00 4.85
43 44 5.170748 ACAAAATAAAAGCTGGCTGCATAC 58.829 37.500 18.84 0.00 45.94 2.39
50 51 0.103208 GCTGGCTGCATACGTACTCT 59.897 55.000 11.80 0.00 42.31 3.24
57 58 3.548268 GCTGCATACGTACTCTCTTTGTC 59.452 47.826 0.00 0.00 0.00 3.18
94 95 8.696410 TGTACTTTCAACTTTGTTGGAAAATC 57.304 30.769 10.05 2.91 0.00 2.17
263 265 6.826741 TGGTCATACTTTTAGATAGTTTGGCC 59.173 38.462 9.26 9.26 44.52 5.36
266 268 7.226918 GTCATACTTTTAGATAGTTTGGCCCTC 59.773 40.741 0.00 0.00 0.00 4.30
279 281 3.662759 TGGCCCTCCAATAAAGTTAGG 57.337 47.619 0.00 0.00 39.99 2.69
281 283 3.202151 TGGCCCTCCAATAAAGTTAGGAG 59.798 47.826 0.00 0.00 45.68 3.69
282 284 3.202373 GGCCCTCCAATAAAGTTAGGAGT 59.798 47.826 0.00 0.00 44.85 3.85
284 286 5.073280 GGCCCTCCAATAAAGTTAGGAGTAT 59.927 44.000 0.00 0.00 44.85 2.12
286 288 7.387643 GCCCTCCAATAAAGTTAGGAGTATAG 58.612 42.308 0.00 0.00 44.85 1.31
288 290 8.935741 CCCTCCAATAAAGTTAGGAGTATAGTT 58.064 37.037 0.00 0.00 44.85 2.24
300 302 9.886132 GTTAGGAGTATAGTTTTTGAAGGATGA 57.114 33.333 0.00 0.00 0.00 2.92
304 306 7.829706 GGAGTATAGTTTTTGAAGGATGAAGGT 59.170 37.037 0.00 0.00 0.00 3.50
310 312 7.974504 AGTTTTTGAAGGATGAAGGTAGTAGA 58.025 34.615 0.00 0.00 0.00 2.59
312 314 9.232473 GTTTTTGAAGGATGAAGGTAGTAGATT 57.768 33.333 0.00 0.00 0.00 2.40
336 338 6.909550 TTTTGTTGTTGCAATATACTCCCT 57.090 33.333 0.59 0.00 0.00 4.20
337 339 6.909550 TTTGTTGTTGCAATATACTCCCTT 57.090 33.333 0.59 0.00 0.00 3.95
338 340 6.909550 TTGTTGTTGCAATATACTCCCTTT 57.090 33.333 0.59 0.00 0.00 3.11
339 341 6.266168 TGTTGTTGCAATATACTCCCTTTG 57.734 37.500 0.59 0.00 0.00 2.77
340 342 5.772672 TGTTGTTGCAATATACTCCCTTTGT 59.227 36.000 0.59 0.00 0.00 2.83
341 343 6.266558 TGTTGTTGCAATATACTCCCTTTGTT 59.733 34.615 0.59 0.00 0.00 2.83
342 344 6.509418 TGTTGCAATATACTCCCTTTGTTC 57.491 37.500 0.59 0.00 0.00 3.18
343 345 5.417580 TGTTGCAATATACTCCCTTTGTTCC 59.582 40.000 0.59 0.00 0.00 3.62
344 346 5.450818 TGCAATATACTCCCTTTGTTCCT 57.549 39.130 0.00 0.00 0.00 3.36
345 347 6.569127 TGCAATATACTCCCTTTGTTCCTA 57.431 37.500 0.00 0.00 0.00 2.94
346 348 6.964464 TGCAATATACTCCCTTTGTTCCTAA 58.036 36.000 0.00 0.00 0.00 2.69
347 349 7.406916 TGCAATATACTCCCTTTGTTCCTAAA 58.593 34.615 0.00 0.00 0.00 1.85
348 350 8.058847 TGCAATATACTCCCTTTGTTCCTAAAT 58.941 33.333 0.00 0.00 0.00 1.40
349 351 9.569122 GCAATATACTCCCTTTGTTCCTAAATA 57.431 33.333 0.00 0.00 0.00 1.40
356 358 9.059023 ACTCCCTTTGTTCCTAAATATAAGTCT 57.941 33.333 0.00 0.00 0.00 3.24
357 359 9.907229 CTCCCTTTGTTCCTAAATATAAGTCTT 57.093 33.333 0.00 0.00 0.00 3.01
383 385 6.951062 TGACATTTCAAATGGACTACAACA 57.049 33.333 14.70 0.00 0.00 3.33
384 386 7.523293 TGACATTTCAAATGGACTACAACAT 57.477 32.000 14.70 0.00 0.00 2.71
385 387 8.628630 TGACATTTCAAATGGACTACAACATA 57.371 30.769 14.70 0.00 0.00 2.29
386 388 8.511321 TGACATTTCAAATGGACTACAACATAC 58.489 33.333 14.70 0.00 0.00 2.39
387 389 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
388 390 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
389 391 5.155278 TCAAATGGACTACAACATACGGT 57.845 39.130 0.00 0.00 0.00 4.83
390 392 5.553123 TCAAATGGACTACAACATACGGTT 58.447 37.500 0.00 0.00 41.47 4.44
428 430 9.944376 TTAGAGTGTAGATTCACTAATTTTGCT 57.056 29.630 0.00 0.00 46.81 3.91
429 431 8.485976 AGAGTGTAGATTCACTAATTTTGCTC 57.514 34.615 0.00 0.00 46.81 4.26
430 432 7.550906 AGAGTGTAGATTCACTAATTTTGCTCC 59.449 37.037 0.00 0.00 46.81 4.70
431 433 6.313905 AGTGTAGATTCACTAATTTTGCTCCG 59.686 38.462 0.00 0.00 45.31 4.63
432 434 6.092259 GTGTAGATTCACTAATTTTGCTCCGT 59.908 38.462 0.00 0.00 35.68 4.69
433 435 7.277098 GTGTAGATTCACTAATTTTGCTCCGTA 59.723 37.037 0.00 0.00 35.68 4.02
434 436 7.985184 TGTAGATTCACTAATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 32.49 3.06
435 437 7.251704 AGATTCACTAATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
436 438 6.823689 AGATTCACTAATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
437 439 7.985184 AGATTCACTAATTTTGCTCCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
438 440 7.908827 TTCACTAATTTTGCTCCGTATGTAA 57.091 32.000 0.00 0.00 0.00 2.41
439 441 8.500753 TTCACTAATTTTGCTCCGTATGTAAT 57.499 30.769 0.00 0.00 0.00 1.89
440 442 8.138365 TCACTAATTTTGCTCCGTATGTAATC 57.862 34.615 0.00 0.00 0.00 1.75
441 443 7.766738 TCACTAATTTTGCTCCGTATGTAATCA 59.233 33.333 0.00 0.00 0.00 2.57
442 444 8.394877 CACTAATTTTGCTCCGTATGTAATCAA 58.605 33.333 0.00 0.00 0.00 2.57
443 445 9.120538 ACTAATTTTGCTCCGTATGTAATCAAT 57.879 29.630 0.00 0.00 0.00 2.57
444 446 9.385902 CTAATTTTGCTCCGTATGTAATCAATG 57.614 33.333 0.00 0.00 0.00 2.82
445 447 6.751514 TTTTGCTCCGTATGTAATCAATGT 57.248 33.333 0.00 0.00 0.00 2.71
446 448 6.751514 TTTGCTCCGTATGTAATCAATGTT 57.248 33.333 0.00 0.00 0.00 2.71
447 449 5.733226 TGCTCCGTATGTAATCAATGTTG 57.267 39.130 0.00 0.00 0.00 3.33
448 450 4.574421 TGCTCCGTATGTAATCAATGTTGG 59.426 41.667 0.00 0.00 0.00 3.77
449 451 4.814234 GCTCCGTATGTAATCAATGTTGGA 59.186 41.667 0.00 0.00 0.00 3.53
450 452 5.295787 GCTCCGTATGTAATCAATGTTGGAA 59.704 40.000 0.00 0.00 0.00 3.53
451 453 6.017109 GCTCCGTATGTAATCAATGTTGGAAT 60.017 38.462 0.00 0.00 0.00 3.01
452 454 7.468631 GCTCCGTATGTAATCAATGTTGGAATT 60.469 37.037 0.00 0.00 0.00 2.17
453 455 8.287439 TCCGTATGTAATCAATGTTGGAATTT 57.713 30.769 0.00 0.00 0.00 1.82
454 456 8.402472 TCCGTATGTAATCAATGTTGGAATTTC 58.598 33.333 0.00 0.00 0.00 2.17
455 457 8.405531 CCGTATGTAATCAATGTTGGAATTTCT 58.594 33.333 0.00 0.00 0.00 2.52
478 480 8.773033 TCTAAAAATACTTATACTCCCTCCGT 57.227 34.615 0.00 0.00 0.00 4.69
479 481 9.205513 TCTAAAAATACTTATACTCCCTCCGTT 57.794 33.333 0.00 0.00 0.00 4.44
480 482 9.473640 CTAAAAATACTTATACTCCCTCCGTTC 57.526 37.037 0.00 0.00 0.00 3.95
481 483 6.416631 AAATACTTATACTCCCTCCGTTCC 57.583 41.667 0.00 0.00 0.00 3.62
482 484 3.684408 ACTTATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
483 485 4.803329 ACTTATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
484 486 5.134725 ACTTATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
485 487 5.522641 ACTTATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
486 488 6.141790 ACTTATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
487 489 7.300658 ACTTATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
488 490 7.954620 ACTTATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
489 491 9.471702 CTTATACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
490 492 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
491 493 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
492 494 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
493 495 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
494 496 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
495 497 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
496 498 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
497 499 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
498 500 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
571 573 7.907214 AGAGTATAAATTCACTCGTTTTGCT 57.093 32.000 8.39 0.00 44.77 3.91
572 574 8.324163 AGAGTATAAATTCACTCGTTTTGCTT 57.676 30.769 8.39 0.00 44.77 3.91
573 575 8.784043 AGAGTATAAATTCACTCGTTTTGCTTT 58.216 29.630 8.39 0.00 44.77 3.51
575 577 9.821662 AGTATAAATTCACTCGTTTTGCTTTAC 57.178 29.630 0.00 0.00 0.00 2.01
576 578 9.601971 GTATAAATTCACTCGTTTTGCTTTACA 57.398 29.630 0.00 0.00 0.00 2.41
578 580 6.991485 AATTCACTCGTTTTGCTTTACATG 57.009 33.333 0.00 0.00 0.00 3.21
579 581 5.493133 TTCACTCGTTTTGCTTTACATGT 57.507 34.783 2.69 2.69 0.00 3.21
580 582 6.606234 TTCACTCGTTTTGCTTTACATGTA 57.394 33.333 0.08 0.08 0.00 2.29
581 583 6.223138 TCACTCGTTTTGCTTTACATGTAG 57.777 37.500 5.56 0.00 0.00 2.74
582 584 5.756347 TCACTCGTTTTGCTTTACATGTAGT 59.244 36.000 5.56 0.00 0.00 2.73
583 585 6.071463 CACTCGTTTTGCTTTACATGTAGTC 58.929 40.000 5.56 0.45 0.00 2.59
584 586 5.107607 ACTCGTTTTGCTTTACATGTAGTCG 60.108 40.000 5.56 0.21 0.00 4.18
585 587 3.838550 CGTTTTGCTTTACATGTAGTCGC 59.161 43.478 5.56 10.25 0.00 5.19
586 588 4.377022 CGTTTTGCTTTACATGTAGTCGCT 60.377 41.667 17.97 0.00 0.00 4.93
587 589 5.449304 GTTTTGCTTTACATGTAGTCGCTT 58.551 37.500 17.97 0.00 0.00 4.68
588 590 4.661993 TTGCTTTACATGTAGTCGCTTG 57.338 40.909 17.97 4.20 0.00 4.01
589 591 3.659786 TGCTTTACATGTAGTCGCTTGT 58.340 40.909 17.97 0.00 0.00 3.16
590 592 4.062293 TGCTTTACATGTAGTCGCTTGTT 58.938 39.130 17.97 0.00 0.00 2.83
591 593 5.231702 TGCTTTACATGTAGTCGCTTGTTA 58.768 37.500 17.97 2.30 0.00 2.41
592 594 5.347635 TGCTTTACATGTAGTCGCTTGTTAG 59.652 40.000 17.97 3.94 0.00 2.34
593 595 5.575606 GCTTTACATGTAGTCGCTTGTTAGA 59.424 40.000 5.56 0.00 0.00 2.10
594 596 6.090358 GCTTTACATGTAGTCGCTTGTTAGAA 59.910 38.462 5.56 0.00 0.00 2.10
595 597 7.201530 GCTTTACATGTAGTCGCTTGTTAGAAT 60.202 37.037 5.56 0.00 0.00 2.40
596 598 7.751047 TTACATGTAGTCGCTTGTTAGAATC 57.249 36.000 5.56 0.00 0.00 2.52
597 599 5.967088 ACATGTAGTCGCTTGTTAGAATCT 58.033 37.500 0.00 0.00 0.00 2.40
598 600 6.037098 ACATGTAGTCGCTTGTTAGAATCTC 58.963 40.000 0.00 0.00 0.00 2.75
599 601 5.899120 TGTAGTCGCTTGTTAGAATCTCT 57.101 39.130 0.00 0.00 0.00 3.10
600 602 6.997239 TGTAGTCGCTTGTTAGAATCTCTA 57.003 37.500 0.00 0.00 0.00 2.43
601 603 7.387119 TGTAGTCGCTTGTTAGAATCTCTAA 57.613 36.000 0.00 0.00 36.68 2.10
602 604 7.823665 TGTAGTCGCTTGTTAGAATCTCTAAA 58.176 34.615 0.00 0.00 40.30 1.85
603 605 8.301720 TGTAGTCGCTTGTTAGAATCTCTAAAA 58.698 33.333 0.00 0.00 40.30 1.52
604 606 9.136952 GTAGTCGCTTGTTAGAATCTCTAAAAA 57.863 33.333 0.00 0.00 40.30 1.94
605 607 8.779354 AGTCGCTTGTTAGAATCTCTAAAAAT 57.221 30.769 0.59 0.00 40.30 1.82
606 608 9.871238 AGTCGCTTGTTAGAATCTCTAAAAATA 57.129 29.630 0.59 0.00 40.30 1.40
607 609 9.903185 GTCGCTTGTTAGAATCTCTAAAAATAC 57.097 33.333 0.59 0.00 40.30 1.89
608 610 9.871238 TCGCTTGTTAGAATCTCTAAAAATACT 57.129 29.630 0.59 0.00 40.30 2.12
626 628 8.459911 AAAATACTATATTTGGAAACGGAGGG 57.540 34.615 0.00 0.00 0.00 4.30
627 629 7.383156 AATACTATATTTGGAAACGGAGGGA 57.617 36.000 0.00 0.00 0.00 4.20
628 630 5.291905 ACTATATTTGGAAACGGAGGGAG 57.708 43.478 0.00 0.00 0.00 4.30
634 636 3.343941 TGGAAACGGAGGGAGTATTTG 57.656 47.619 0.00 0.00 0.00 2.32
639 641 2.488836 ACGGAGGGAGTATTTGGGAAT 58.511 47.619 0.00 0.00 0.00 3.01
640 642 2.438392 ACGGAGGGAGTATTTGGGAATC 59.562 50.000 0.00 0.00 0.00 2.52
664 669 5.180810 AGGGAGTAGATTTTTGGGTCTTC 57.819 43.478 0.00 0.00 0.00 2.87
702 707 1.029681 AAACTTCAAACGGGCCTGAC 58.970 50.000 21.41 0.00 0.00 3.51
705 710 1.566018 CTTCAAACGGGCCTGACGAC 61.566 60.000 21.41 0.00 34.93 4.34
785 801 2.285442 CCGGGAAGAAGGGACCCT 60.285 66.667 7.44 7.44 41.28 4.34
870 886 4.875713 GCGCCCGTTCCCCATCAT 62.876 66.667 0.00 0.00 0.00 2.45
881 897 1.072173 TCCCCATCATCATAACCTGCG 59.928 52.381 0.00 0.00 0.00 5.18
882 898 1.202806 CCCCATCATCATAACCTGCGT 60.203 52.381 0.00 0.00 0.00 5.24
883 899 2.038426 CCCCATCATCATAACCTGCGTA 59.962 50.000 0.00 0.00 0.00 4.42
884 900 3.067106 CCCATCATCATAACCTGCGTAC 58.933 50.000 0.00 0.00 0.00 3.67
885 901 3.067106 CCATCATCATAACCTGCGTACC 58.933 50.000 0.00 0.00 0.00 3.34
886 902 2.502213 TCATCATAACCTGCGTACCG 57.498 50.000 0.00 0.00 0.00 4.02
1662 1687 4.752879 CCGGCCACCAACGACGAT 62.753 66.667 2.24 0.00 0.00 3.73
1719 1744 3.259123 GGTGGCTCCATTTGACATCTTTT 59.741 43.478 0.00 0.00 35.97 2.27
1734 1759 9.630098 TTGACATCTTTTCTCTCATTAATTTGC 57.370 29.630 0.00 0.00 0.00 3.68
1980 2165 6.053632 TCTTGTTCATTGCTCTCCTGAATA 57.946 37.500 0.00 0.00 32.05 1.75
2074 2259 5.163652 GCCATGGTGTTGAGGTAAATAGAAC 60.164 44.000 14.67 0.00 0.00 3.01
2296 2595 9.950680 TCATTGTTAGCTTTCTCAAAACTAAAG 57.049 29.630 0.00 0.00 34.14 1.85
2297 2596 9.950680 CATTGTTAGCTTTCTCAAAACTAAAGA 57.049 29.630 0.00 0.00 33.05 2.52
2356 2721 7.633018 AGTATATGGATAGCTTTTCCTTGGA 57.367 36.000 14.50 0.00 34.17 3.53
2404 2769 1.609208 GCTGGTCCAATCTGTGTGTT 58.391 50.000 0.00 0.00 0.00 3.32
2574 2939 3.077359 CTCACCAAGCTTAAGAACTGGG 58.923 50.000 6.67 4.32 32.74 4.45
2673 3038 5.397899 CCCCCTAAGAGTTTGCATGAATCTA 60.398 44.000 0.00 0.00 0.00 1.98
2718 3084 5.556355 TCGTACAGTCACGATCAACTAAT 57.444 39.130 0.00 0.00 45.45 1.73
2735 3101 6.156602 TCAACTAATTCTAACCCGTATTCCCA 59.843 38.462 0.00 0.00 0.00 4.37
2736 3102 6.564557 ACTAATTCTAACCCGTATTCCCAA 57.435 37.500 0.00 0.00 0.00 4.12
2737 3103 6.351711 ACTAATTCTAACCCGTATTCCCAAC 58.648 40.000 0.00 0.00 0.00 3.77
2738 3104 5.446260 AATTCTAACCCGTATTCCCAACT 57.554 39.130 0.00 0.00 0.00 3.16
2740 3106 4.914177 TCTAACCCGTATTCCCAACTTT 57.086 40.909 0.00 0.00 0.00 2.66
2741 3107 5.245584 TCTAACCCGTATTCCCAACTTTT 57.754 39.130 0.00 0.00 0.00 2.27
2742 3108 5.247862 TCTAACCCGTATTCCCAACTTTTC 58.752 41.667 0.00 0.00 0.00 2.29
2743 3109 2.429478 ACCCGTATTCCCAACTTTTCG 58.571 47.619 0.00 0.00 0.00 3.46
2744 3110 2.224597 ACCCGTATTCCCAACTTTTCGT 60.225 45.455 0.00 0.00 0.00 3.85
2745 3111 2.417586 CCCGTATTCCCAACTTTTCGTC 59.582 50.000 0.00 0.00 0.00 4.20
2746 3112 2.417586 CCGTATTCCCAACTTTTCGTCC 59.582 50.000 0.00 0.00 0.00 4.79
2747 3113 2.093152 CGTATTCCCAACTTTTCGTCCG 59.907 50.000 0.00 0.00 0.00 4.79
2748 3114 2.265589 ATTCCCAACTTTTCGTCCGT 57.734 45.000 0.00 0.00 0.00 4.69
2754 3180 1.986632 AACTTTTCGTCCGTGGGGGT 61.987 55.000 0.00 0.00 37.00 4.95
2873 3315 9.464714 CTTTGATCCCGAATAATATATACGAGG 57.535 37.037 0.00 0.00 0.00 4.63
2897 3339 5.596836 TTGTGGTTTGCTCTTTTGATCTT 57.403 34.783 0.00 0.00 0.00 2.40
2898 3340 5.596836 TGTGGTTTGCTCTTTTGATCTTT 57.403 34.783 0.00 0.00 0.00 2.52
2899 3341 6.707440 TGTGGTTTGCTCTTTTGATCTTTA 57.293 33.333 0.00 0.00 0.00 1.85
2940 3382 3.889538 AGCTGTAGACTGTGACAACTACA 59.110 43.478 21.77 21.77 41.47 2.74
2985 3427 6.474140 TCTTCATTTCAATCCCCATCATTG 57.526 37.500 0.00 0.00 33.22 2.82
3008 3450 3.319137 TCAGTGCATCAGACTTGGTAC 57.681 47.619 0.00 0.00 0.00 3.34
3072 3514 6.109156 TCTGTGATTTCCTACTAAACAGCA 57.891 37.500 0.00 0.00 34.85 4.41
3171 3613 3.181493 CCATCAGGCTTGCATTACACTTC 60.181 47.826 0.00 0.00 0.00 3.01
3178 3620 3.126000 GCTTGCATTACACTTCTCCTGTC 59.874 47.826 0.00 0.00 0.00 3.51
3230 3673 7.880160 ACATGTGTATGTATTTATGGTGCTT 57.120 32.000 0.00 0.00 45.45 3.91
3231 3674 7.930217 ACATGTGTATGTATTTATGGTGCTTC 58.070 34.615 0.00 0.00 45.45 3.86
3292 3737 1.394917 GTATTGCTCCAAGCGTCACTG 59.605 52.381 0.00 0.00 46.26 3.66
3329 3774 0.244994 GACACGAGTCCAGACTGCAT 59.755 55.000 4.74 0.00 42.66 3.96
3520 3965 2.305927 TCTCCCAAACTCCATCCTGTTC 59.694 50.000 0.00 0.00 0.00 3.18
3530 3975 6.380079 ACTCCATCCTGTTCTTTCTAACAT 57.620 37.500 0.00 0.00 38.61 2.71
3553 3998 3.440173 GCCTGTTCAGTATTTAGCTTGCA 59.560 43.478 0.00 0.00 0.00 4.08
3555 4000 4.142600 CCTGTTCAGTATTTAGCTTGCACC 60.143 45.833 0.00 0.00 0.00 5.01
4297 4742 5.867716 TGAAGAGCCTTTGTATAAAGTCGTC 59.132 40.000 10.61 10.08 41.36 4.20
4388 4833 1.069636 GCTGTTGTTGAGCTGTAGTGC 60.070 52.381 0.00 0.00 33.37 4.40
4446 4891 3.243535 CGTGCTCTAATGAGTGATGGCTA 60.244 47.826 0.00 0.00 42.13 3.93
4447 4892 4.054671 GTGCTCTAATGAGTGATGGCTAC 58.945 47.826 0.00 0.00 42.13 3.58
4473 4918 0.664761 AGTGTGCTGTGTGATGTTGC 59.335 50.000 0.00 0.00 0.00 4.17
4545 5030 2.479275 GACCAAGAACGCCTTACTGAAC 59.521 50.000 0.00 0.00 32.86 3.18
4562 5047 2.032799 TGAACGCAACCTGTTAGCTTTG 59.967 45.455 0.00 0.00 0.00 2.77
4572 5057 2.625823 TTAGCTTTGCTGTGGCCGC 61.626 57.895 10.11 10.11 40.10 6.53
4573 5058 3.841137 TAGCTTTGCTGTGGCCGCA 62.841 57.895 19.93 19.93 40.10 5.69
4574 5059 4.712425 GCTTTGCTGTGGCCGCAG 62.712 66.667 36.88 36.88 38.80 5.18
4587 5072 3.353600 CGCAGGTGGTTCATTGCA 58.646 55.556 0.00 0.00 36.37 4.08
4588 5073 1.885157 CGCAGGTGGTTCATTGCAT 59.115 52.632 0.00 0.00 36.37 3.96
4589 5074 1.093972 CGCAGGTGGTTCATTGCATA 58.906 50.000 0.00 0.00 36.37 3.14
4590 5075 1.064505 CGCAGGTGGTTCATTGCATAG 59.935 52.381 0.00 0.00 36.37 2.23
4591 5076 1.406539 GCAGGTGGTTCATTGCATAGG 59.593 52.381 0.00 0.00 36.59 2.57
4592 5077 2.726821 CAGGTGGTTCATTGCATAGGT 58.273 47.619 0.00 0.00 0.00 3.08
4593 5078 3.091545 CAGGTGGTTCATTGCATAGGTT 58.908 45.455 0.00 0.00 0.00 3.50
4594 5079 3.091545 AGGTGGTTCATTGCATAGGTTG 58.908 45.455 0.00 0.00 0.00 3.77
4595 5080 2.166254 GGTGGTTCATTGCATAGGTTGG 59.834 50.000 0.00 0.00 0.00 3.77
4596 5081 1.824230 TGGTTCATTGCATAGGTTGGC 59.176 47.619 0.00 0.00 0.00 4.52
4597 5082 1.824230 GGTTCATTGCATAGGTTGGCA 59.176 47.619 0.00 0.00 38.46 4.92
4598 5083 2.431782 GGTTCATTGCATAGGTTGGCAT 59.568 45.455 0.00 0.00 40.17 4.40
4599 5084 3.450578 GTTCATTGCATAGGTTGGCATG 58.549 45.455 0.00 0.00 40.17 4.06
4600 5085 2.737544 TCATTGCATAGGTTGGCATGT 58.262 42.857 0.00 0.00 40.17 3.21
4601 5086 3.895998 TCATTGCATAGGTTGGCATGTA 58.104 40.909 0.00 0.00 40.17 2.29
4602 5087 3.884693 TCATTGCATAGGTTGGCATGTAG 59.115 43.478 0.00 0.00 40.17 2.74
4603 5088 3.364460 TTGCATAGGTTGGCATGTAGT 57.636 42.857 0.00 0.00 40.17 2.73
4604 5089 2.917933 TGCATAGGTTGGCATGTAGTC 58.082 47.619 0.00 0.00 34.58 2.59
4605 5090 2.222027 GCATAGGTTGGCATGTAGTCC 58.778 52.381 0.00 0.00 0.00 3.85
4606 5091 2.851195 CATAGGTTGGCATGTAGTCCC 58.149 52.381 0.00 0.00 0.00 4.46
4607 5092 1.959710 TAGGTTGGCATGTAGTCCCA 58.040 50.000 0.00 0.00 0.00 4.37
4635 5120 4.565652 GGCATTCTGAACTCCTGAACCTTA 60.566 45.833 0.00 0.00 35.90 2.69
4636 5121 4.633565 GCATTCTGAACTCCTGAACCTTAG 59.366 45.833 0.00 0.00 35.90 2.18
4637 5122 5.799213 CATTCTGAACTCCTGAACCTTAGT 58.201 41.667 0.00 0.00 35.90 2.24
4641 5126 2.841442 ACTCCTGAACCTTAGTGTGC 57.159 50.000 0.00 0.00 0.00 4.57
4646 5131 2.028112 CCTGAACCTTAGTGTGCTGCTA 60.028 50.000 0.00 0.00 0.00 3.49
4700 5203 5.243426 TCTTTTGTTAGCTGTTTGGTGTC 57.757 39.130 0.00 0.00 0.00 3.67
4713 5216 0.821517 TGGTGTCGTGTCAGTTGAGT 59.178 50.000 0.00 0.00 0.00 3.41
4729 5232 8.373992 GTCAGTTGAGTAAATTGAGTATTCGTC 58.626 37.037 0.00 0.00 35.40 4.20
4731 5234 7.272731 CAGTTGAGTAAATTGAGTATTCGTCGA 59.727 37.037 0.00 0.00 0.00 4.20
4739 5242 5.773239 TTGAGTATTCGTCGATTTTGGTC 57.227 39.130 0.00 0.00 0.00 4.02
4766 5276 2.872557 CGGTGGCATCTGCAACTG 59.127 61.111 9.45 6.88 44.30 3.16
4767 5277 4.402851 GGTGGCATCTGCAACTGA 57.597 55.556 9.45 0.00 44.30 3.41
4768 5278 2.877975 GGTGGCATCTGCAACTGAT 58.122 52.632 9.45 0.00 44.30 2.90
4769 5279 0.454600 GGTGGCATCTGCAACTGATG 59.545 55.000 9.45 9.48 44.30 3.07
4770 5280 1.171308 GTGGCATCTGCAACTGATGT 58.829 50.000 13.98 0.00 41.68 3.06
4771 5281 1.135489 GTGGCATCTGCAACTGATGTG 60.135 52.381 13.98 0.00 41.68 3.21
4772 5282 0.454600 GGCATCTGCAACTGATGTGG 59.545 55.000 13.98 0.00 44.36 4.17
4773 5283 0.454600 GCATCTGCAACTGATGTGGG 59.545 55.000 13.98 0.00 40.38 4.61
4774 5284 0.454600 CATCTGCAACTGATGTGGGC 59.545 55.000 6.32 0.00 35.86 5.36
5115 5625 3.121738 CGTAGTTTCCTTCCCACTTGT 57.878 47.619 0.00 0.00 0.00 3.16
5116 5626 3.064931 CGTAGTTTCCTTCCCACTTGTC 58.935 50.000 0.00 0.00 0.00 3.18
5117 5627 3.493699 CGTAGTTTCCTTCCCACTTGTCA 60.494 47.826 0.00 0.00 0.00 3.58
5118 5628 3.662759 AGTTTCCTTCCCACTTGTCAA 57.337 42.857 0.00 0.00 0.00 3.18
5119 5629 3.288092 AGTTTCCTTCCCACTTGTCAAC 58.712 45.455 0.00 0.00 0.00 3.18
5120 5630 3.053619 AGTTTCCTTCCCACTTGTCAACT 60.054 43.478 0.00 0.00 0.00 3.16
5121 5631 3.662759 TTCCTTCCCACTTGTCAACTT 57.337 42.857 0.00 0.00 0.00 2.66
5122 5632 2.930950 TCCTTCCCACTTGTCAACTTG 58.069 47.619 0.00 0.00 0.00 3.16
5123 5633 1.338020 CCTTCCCACTTGTCAACTTGC 59.662 52.381 0.00 0.00 0.00 4.01
5124 5634 2.023673 CTTCCCACTTGTCAACTTGCA 58.976 47.619 0.00 0.00 0.00 4.08
5125 5635 2.363306 TCCCACTTGTCAACTTGCAT 57.637 45.000 0.00 0.00 0.00 3.96
5126 5636 3.500448 TCCCACTTGTCAACTTGCATA 57.500 42.857 0.00 0.00 0.00 3.14
5127 5637 4.032960 TCCCACTTGTCAACTTGCATAT 57.967 40.909 0.00 0.00 0.00 1.78
5128 5638 3.758023 TCCCACTTGTCAACTTGCATATG 59.242 43.478 0.00 0.00 0.00 1.78
5129 5639 3.507233 CCCACTTGTCAACTTGCATATGT 59.493 43.478 4.29 0.00 0.00 2.29
5130 5640 4.478699 CCACTTGTCAACTTGCATATGTG 58.521 43.478 4.29 0.00 0.00 3.21
5131 5641 4.216042 CCACTTGTCAACTTGCATATGTGA 59.784 41.667 4.29 0.00 0.00 3.58
5132 5642 5.106038 CCACTTGTCAACTTGCATATGTGAT 60.106 40.000 4.29 0.00 0.00 3.06
5133 5643 6.025896 CACTTGTCAACTTGCATATGTGATC 58.974 40.000 4.29 0.00 0.00 2.92
5134 5644 5.124457 ACTTGTCAACTTGCATATGTGATCC 59.876 40.000 4.29 0.00 0.00 3.36
5135 5645 4.587891 TGTCAACTTGCATATGTGATCCA 58.412 39.130 4.29 0.00 0.00 3.41
5136 5646 5.195185 TGTCAACTTGCATATGTGATCCAT 58.805 37.500 4.29 0.00 37.58 3.41
5137 5647 5.297527 TGTCAACTTGCATATGTGATCCATC 59.702 40.000 4.29 0.00 34.86 3.51
5138 5648 4.823442 TCAACTTGCATATGTGATCCATCC 59.177 41.667 4.29 0.00 34.86 3.51
5139 5649 4.442401 ACTTGCATATGTGATCCATCCA 57.558 40.909 4.29 0.00 34.86 3.41
5140 5650 4.994282 ACTTGCATATGTGATCCATCCAT 58.006 39.130 4.29 0.00 34.86 3.41
5141 5651 6.130692 ACTTGCATATGTGATCCATCCATA 57.869 37.500 4.29 0.00 34.86 2.74
5142 5652 5.942236 ACTTGCATATGTGATCCATCCATAC 59.058 40.000 4.29 0.00 34.86 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.657541 CCAGCTTTTATTTTGTACTACCTCCA 59.342 38.462 0.00 0.00 0.00 3.86
29 30 0.537188 AGTACGTATGCAGCCAGCTT 59.463 50.000 0.00 0.00 45.94 3.74
31 32 0.103208 AGAGTACGTATGCAGCCAGC 59.897 55.000 0.00 0.00 45.96 4.85
35 36 3.512680 ACAAAGAGAGTACGTATGCAGC 58.487 45.455 0.00 0.00 0.00 5.25
43 44 6.598753 TTTTTCAAGGACAAAGAGAGTACG 57.401 37.500 0.00 0.00 0.00 3.67
67 68 9.665719 ATTTTCCAACAAAGTTGAAAGTACATT 57.334 25.926 11.19 0.00 0.00 2.71
68 69 9.313118 GATTTTCCAACAAAGTTGAAAGTACAT 57.687 29.630 11.19 2.16 0.00 2.29
236 237 8.736244 GCCAAACTATCTAAAAGTATGACCAAA 58.264 33.333 0.00 0.00 0.00 3.28
237 238 7.338449 GGCCAAACTATCTAAAAGTATGACCAA 59.662 37.037 0.00 0.00 0.00 3.67
244 246 5.489637 TGGAGGGCCAAACTATCTAAAAGTA 59.510 40.000 6.18 0.00 42.49 2.24
277 279 8.049721 CCTTCATCCTTCAAAAACTATACTCCT 58.950 37.037 0.00 0.00 0.00 3.69
278 280 7.829706 ACCTTCATCCTTCAAAAACTATACTCC 59.170 37.037 0.00 0.00 0.00 3.85
279 281 8.794335 ACCTTCATCCTTCAAAAACTATACTC 57.206 34.615 0.00 0.00 0.00 2.59
281 283 9.668497 ACTACCTTCATCCTTCAAAAACTATAC 57.332 33.333 0.00 0.00 0.00 1.47
284 286 9.096823 TCTACTACCTTCATCCTTCAAAAACTA 57.903 33.333 0.00 0.00 0.00 2.24
286 288 8.794335 ATCTACTACCTTCATCCTTCAAAAAC 57.206 34.615 0.00 0.00 0.00 2.43
288 290 9.807921 AAAATCTACTACCTTCATCCTTCAAAA 57.192 29.630 0.00 0.00 0.00 2.44
312 314 7.296628 AGGGAGTATATTGCAACAACAAAAA 57.703 32.000 0.00 0.00 32.27 1.94
317 319 6.267496 ACAAAGGGAGTATATTGCAACAAC 57.733 37.500 0.00 0.00 0.00 3.32
318 320 6.071616 GGAACAAAGGGAGTATATTGCAACAA 60.072 38.462 0.00 0.00 0.00 2.83
320 322 5.652452 AGGAACAAAGGGAGTATATTGCAAC 59.348 40.000 0.00 0.00 0.00 4.17
323 325 7.875327 TTTAGGAACAAAGGGAGTATATTGC 57.125 36.000 0.00 0.00 0.00 3.56
330 332 9.059023 AGACTTATATTTAGGAACAAAGGGAGT 57.941 33.333 0.00 0.00 0.00 3.85
331 333 9.907229 AAGACTTATATTTAGGAACAAAGGGAG 57.093 33.333 0.00 0.00 0.00 4.30
359 361 7.340122 TGTTGTAGTCCATTTGAAATGTCAA 57.660 32.000 15.93 10.04 42.12 3.18
360 362 6.951062 TGTTGTAGTCCATTTGAAATGTCA 57.049 33.333 15.93 0.44 0.00 3.58
361 363 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
362 364 7.361713 CCGTATGTTGTAGTCCATTTGAAATGT 60.362 37.037 15.93 1.43 0.00 2.71
363 365 6.966632 CCGTATGTTGTAGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
364 366 6.657541 ACCGTATGTTGTAGTCCATTTGAAAT 59.342 34.615 0.00 0.00 0.00 2.17
365 367 5.998981 ACCGTATGTTGTAGTCCATTTGAAA 59.001 36.000 0.00 0.00 0.00 2.69
366 368 5.553123 ACCGTATGTTGTAGTCCATTTGAA 58.447 37.500 0.00 0.00 0.00 2.69
367 369 5.155278 ACCGTATGTTGTAGTCCATTTGA 57.845 39.130 0.00 0.00 0.00 2.69
368 370 5.873179 AACCGTATGTTGTAGTCCATTTG 57.127 39.130 0.00 0.00 35.31 2.32
402 404 9.944376 AGCAAAATTAGTGAATCTACACTCTAA 57.056 29.630 4.63 0.00 46.36 2.10
403 405 9.587772 GAGCAAAATTAGTGAATCTACACTCTA 57.412 33.333 4.63 0.00 46.36 2.43
404 406 7.550906 GGAGCAAAATTAGTGAATCTACACTCT 59.449 37.037 4.63 0.00 46.36 3.24
405 407 7.464710 CGGAGCAAAATTAGTGAATCTACACTC 60.465 40.741 4.63 0.00 46.36 3.51
407 409 6.092259 ACGGAGCAAAATTAGTGAATCTACAC 59.908 38.462 0.00 0.00 40.60 2.90
408 410 6.170506 ACGGAGCAAAATTAGTGAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
409 411 6.663944 ACGGAGCAAAATTAGTGAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
410 412 7.985184 ACATACGGAGCAAAATTAGTGAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
411 413 6.823689 ACATACGGAGCAAAATTAGTGAATCT 59.176 34.615 0.00 0.00 0.00 2.40
412 414 7.016361 ACATACGGAGCAAAATTAGTGAATC 57.984 36.000 0.00 0.00 0.00 2.52
413 415 8.500753 TTACATACGGAGCAAAATTAGTGAAT 57.499 30.769 0.00 0.00 0.00 2.57
414 416 7.908827 TTACATACGGAGCAAAATTAGTGAA 57.091 32.000 0.00 0.00 0.00 3.18
415 417 7.766738 TGATTACATACGGAGCAAAATTAGTGA 59.233 33.333 0.00 0.00 0.00 3.41
416 418 7.915508 TGATTACATACGGAGCAAAATTAGTG 58.084 34.615 0.00 0.00 0.00 2.74
417 419 8.500753 TTGATTACATACGGAGCAAAATTAGT 57.499 30.769 0.00 0.00 0.00 2.24
418 420 9.385902 CATTGATTACATACGGAGCAAAATTAG 57.614 33.333 0.00 0.00 0.00 1.73
419 421 8.898761 ACATTGATTACATACGGAGCAAAATTA 58.101 29.630 0.00 0.00 0.00 1.40
420 422 7.771183 ACATTGATTACATACGGAGCAAAATT 58.229 30.769 0.00 0.00 0.00 1.82
421 423 7.333528 ACATTGATTACATACGGAGCAAAAT 57.666 32.000 0.00 0.00 0.00 1.82
422 424 6.751514 ACATTGATTACATACGGAGCAAAA 57.248 33.333 0.00 0.00 0.00 2.44
423 425 6.404184 CCAACATTGATTACATACGGAGCAAA 60.404 38.462 0.00 0.00 0.00 3.68
424 426 5.065859 CCAACATTGATTACATACGGAGCAA 59.934 40.000 0.00 0.00 0.00 3.91
425 427 4.574421 CCAACATTGATTACATACGGAGCA 59.426 41.667 0.00 0.00 0.00 4.26
426 428 4.814234 TCCAACATTGATTACATACGGAGC 59.186 41.667 0.00 0.00 0.00 4.70
427 429 6.918892 TTCCAACATTGATTACATACGGAG 57.081 37.500 0.00 0.00 0.00 4.63
428 430 7.873719 AATTCCAACATTGATTACATACGGA 57.126 32.000 0.00 0.00 0.00 4.69
429 431 8.405531 AGAAATTCCAACATTGATTACATACGG 58.594 33.333 0.00 0.00 0.00 4.02
452 454 9.205513 ACGGAGGGAGTATAAGTATTTTTAGAA 57.794 33.333 0.00 0.00 0.00 2.10
453 455 8.773033 ACGGAGGGAGTATAAGTATTTTTAGA 57.227 34.615 0.00 0.00 0.00 2.10
454 456 9.473640 GAACGGAGGGAGTATAAGTATTTTTAG 57.526 37.037 0.00 0.00 0.00 1.85
455 457 8.424133 GGAACGGAGGGAGTATAAGTATTTTTA 58.576 37.037 0.00 0.00 0.00 1.52
456 458 7.126879 AGGAACGGAGGGAGTATAAGTATTTTT 59.873 37.037 0.00 0.00 0.00 1.94
457 459 6.614496 AGGAACGGAGGGAGTATAAGTATTTT 59.386 38.462 0.00 0.00 0.00 1.82
458 460 6.141790 AGGAACGGAGGGAGTATAAGTATTT 58.858 40.000 0.00 0.00 0.00 1.40
459 461 5.713807 AGGAACGGAGGGAGTATAAGTATT 58.286 41.667 0.00 0.00 0.00 1.89
460 462 5.336491 AGGAACGGAGGGAGTATAAGTAT 57.664 43.478 0.00 0.00 0.00 2.12
461 463 4.803329 AGGAACGGAGGGAGTATAAGTA 57.197 45.455 0.00 0.00 0.00 2.24
462 464 3.684408 AGGAACGGAGGGAGTATAAGT 57.316 47.619 0.00 0.00 0.00 2.24
463 465 6.667558 ATTTAGGAACGGAGGGAGTATAAG 57.332 41.667 0.00 0.00 0.00 1.73
464 466 9.827198 TTATATTTAGGAACGGAGGGAGTATAA 57.173 33.333 0.00 0.00 0.00 0.98
465 467 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
466 468 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
467 469 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
468 470 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
469 471 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
470 472 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
471 473 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
472 474 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
545 547 9.431887 AGCAAAACGAGTGAATTTATACTCTAA 57.568 29.630 13.22 0.00 40.82 2.10
546 548 8.997621 AGCAAAACGAGTGAATTTATACTCTA 57.002 30.769 13.22 0.00 40.82 2.43
547 549 7.907214 AGCAAAACGAGTGAATTTATACTCT 57.093 32.000 13.22 0.00 40.82 3.24
548 550 8.950403 AAAGCAAAACGAGTGAATTTATACTC 57.050 30.769 0.00 7.85 39.86 2.59
549 551 9.821662 GTAAAGCAAAACGAGTGAATTTATACT 57.178 29.630 0.00 0.00 0.00 2.12
550 552 9.601971 TGTAAAGCAAAACGAGTGAATTTATAC 57.398 29.630 0.00 0.00 0.00 1.47
552 554 9.128107 CATGTAAAGCAAAACGAGTGAATTTAT 57.872 29.630 0.00 0.00 0.00 1.40
553 555 8.132362 ACATGTAAAGCAAAACGAGTGAATTTA 58.868 29.630 0.00 0.00 0.00 1.40
554 556 6.978080 ACATGTAAAGCAAAACGAGTGAATTT 59.022 30.769 0.00 0.00 0.00 1.82
555 557 6.503524 ACATGTAAAGCAAAACGAGTGAATT 58.496 32.000 0.00 0.00 0.00 2.17
556 558 6.072112 ACATGTAAAGCAAAACGAGTGAAT 57.928 33.333 0.00 0.00 0.00 2.57
557 559 5.493133 ACATGTAAAGCAAAACGAGTGAA 57.507 34.783 0.00 0.00 0.00 3.18
558 560 5.756347 ACTACATGTAAAGCAAAACGAGTGA 59.244 36.000 7.06 0.00 0.00 3.41
559 561 5.985781 ACTACATGTAAAGCAAAACGAGTG 58.014 37.500 7.06 0.00 0.00 3.51
560 562 5.107607 CGACTACATGTAAAGCAAAACGAGT 60.108 40.000 7.06 0.00 0.00 4.18
561 563 5.305812 CGACTACATGTAAAGCAAAACGAG 58.694 41.667 7.06 0.00 0.00 4.18
562 564 4.376615 GCGACTACATGTAAAGCAAAACGA 60.377 41.667 16.96 0.00 0.00 3.85
563 565 3.838550 GCGACTACATGTAAAGCAAAACG 59.161 43.478 16.96 10.51 0.00 3.60
564 566 5.030874 AGCGACTACATGTAAAGCAAAAC 57.969 39.130 21.27 3.62 0.00 2.43
565 567 5.008217 ACAAGCGACTACATGTAAAGCAAAA 59.992 36.000 21.27 0.00 0.00 2.44
566 568 4.513692 ACAAGCGACTACATGTAAAGCAAA 59.486 37.500 21.27 0.00 0.00 3.68
567 569 4.062293 ACAAGCGACTACATGTAAAGCAA 58.938 39.130 21.27 0.00 0.00 3.91
568 570 3.659786 ACAAGCGACTACATGTAAAGCA 58.340 40.909 21.27 0.00 0.00 3.91
569 571 4.663636 AACAAGCGACTACATGTAAAGC 57.336 40.909 7.06 11.98 0.00 3.51
570 572 7.576750 TTCTAACAAGCGACTACATGTAAAG 57.423 36.000 7.06 0.11 0.00 1.85
571 573 8.033038 AGATTCTAACAAGCGACTACATGTAAA 58.967 33.333 7.06 0.00 0.00 2.01
572 574 7.544622 AGATTCTAACAAGCGACTACATGTAA 58.455 34.615 7.06 0.00 0.00 2.41
573 575 7.067129 AGAGATTCTAACAAGCGACTACATGTA 59.933 37.037 5.25 5.25 0.00 2.29
574 576 5.967088 AGATTCTAACAAGCGACTACATGT 58.033 37.500 2.69 2.69 0.00 3.21
575 577 6.269315 AGAGATTCTAACAAGCGACTACATG 58.731 40.000 0.00 0.00 0.00 3.21
576 578 6.458232 AGAGATTCTAACAAGCGACTACAT 57.542 37.500 0.00 0.00 0.00 2.29
577 579 5.899120 AGAGATTCTAACAAGCGACTACA 57.101 39.130 0.00 0.00 0.00 2.74
578 580 8.684973 TTTTAGAGATTCTAACAAGCGACTAC 57.315 34.615 0.00 0.00 38.56 2.73
579 581 9.871238 ATTTTTAGAGATTCTAACAAGCGACTA 57.129 29.630 0.00 0.00 38.56 2.59
580 582 8.779354 ATTTTTAGAGATTCTAACAAGCGACT 57.221 30.769 0.00 0.00 38.56 4.18
581 583 9.903185 GTATTTTTAGAGATTCTAACAAGCGAC 57.097 33.333 0.00 0.00 38.56 5.19
582 584 9.871238 AGTATTTTTAGAGATTCTAACAAGCGA 57.129 29.630 0.00 0.00 38.56 4.93
600 602 8.909923 CCCTCCGTTTCCAAATATAGTATTTTT 58.090 33.333 0.00 0.00 0.00 1.94
601 603 8.276477 TCCCTCCGTTTCCAAATATAGTATTTT 58.724 33.333 0.00 0.00 0.00 1.82
602 604 7.808218 TCCCTCCGTTTCCAAATATAGTATTT 58.192 34.615 0.00 0.00 0.00 1.40
603 605 7.072076 ACTCCCTCCGTTTCCAAATATAGTATT 59.928 37.037 0.00 0.00 0.00 1.89
604 606 6.557633 ACTCCCTCCGTTTCCAAATATAGTAT 59.442 38.462 0.00 0.00 0.00 2.12
605 607 5.901276 ACTCCCTCCGTTTCCAAATATAGTA 59.099 40.000 0.00 0.00 0.00 1.82
606 608 4.720273 ACTCCCTCCGTTTCCAAATATAGT 59.280 41.667 0.00 0.00 0.00 2.12
607 609 5.291905 ACTCCCTCCGTTTCCAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
608 610 7.383156 AATACTCCCTCCGTTTCCAAATATA 57.617 36.000 0.00 0.00 0.00 0.86
609 611 5.906772 ATACTCCCTCCGTTTCCAAATAT 57.093 39.130 0.00 0.00 0.00 1.28
610 612 5.703730 AATACTCCCTCCGTTTCCAAATA 57.296 39.130 0.00 0.00 0.00 1.40
611 613 4.586306 AATACTCCCTCCGTTTCCAAAT 57.414 40.909 0.00 0.00 0.00 2.32
612 614 4.076394 CAAATACTCCCTCCGTTTCCAAA 58.924 43.478 0.00 0.00 0.00 3.28
613 615 3.560453 CCAAATACTCCCTCCGTTTCCAA 60.560 47.826 0.00 0.00 0.00 3.53
614 616 2.026636 CCAAATACTCCCTCCGTTTCCA 60.027 50.000 0.00 0.00 0.00 3.53
615 617 2.640184 CCAAATACTCCCTCCGTTTCC 58.360 52.381 0.00 0.00 0.00 3.13
616 618 2.237893 TCCCAAATACTCCCTCCGTTTC 59.762 50.000 0.00 0.00 0.00 2.78
617 619 2.271777 TCCCAAATACTCCCTCCGTTT 58.728 47.619 0.00 0.00 0.00 3.60
618 620 1.961133 TCCCAAATACTCCCTCCGTT 58.039 50.000 0.00 0.00 0.00 4.44
619 621 1.961133 TTCCCAAATACTCCCTCCGT 58.039 50.000 0.00 0.00 0.00 4.69
620 622 2.548067 CGATTCCCAAATACTCCCTCCG 60.548 54.545 0.00 0.00 0.00 4.63
621 623 2.704065 TCGATTCCCAAATACTCCCTCC 59.296 50.000 0.00 0.00 0.00 4.30
622 624 3.244249 CCTCGATTCCCAAATACTCCCTC 60.244 52.174 0.00 0.00 0.00 4.30
623 625 2.706190 CCTCGATTCCCAAATACTCCCT 59.294 50.000 0.00 0.00 0.00 4.20
624 626 2.224548 CCCTCGATTCCCAAATACTCCC 60.225 54.545 0.00 0.00 0.00 4.30
625 627 2.704065 TCCCTCGATTCCCAAATACTCC 59.296 50.000 0.00 0.00 0.00 3.85
626 628 3.388350 ACTCCCTCGATTCCCAAATACTC 59.612 47.826 0.00 0.00 0.00 2.59
627 629 3.385115 ACTCCCTCGATTCCCAAATACT 58.615 45.455 0.00 0.00 0.00 2.12
628 630 3.840124 ACTCCCTCGATTCCCAAATAC 57.160 47.619 0.00 0.00 0.00 1.89
634 636 4.691326 AAAATCTACTCCCTCGATTCCC 57.309 45.455 0.00 0.00 0.00 3.97
639 641 3.178865 ACCCAAAAATCTACTCCCTCGA 58.821 45.455 0.00 0.00 0.00 4.04
640 642 3.197983 AGACCCAAAAATCTACTCCCTCG 59.802 47.826 0.00 0.00 0.00 4.63
664 669 1.533625 TGAAATTTGAGCTGGTCCGG 58.466 50.000 4.17 0.00 0.00 5.14
785 801 3.210223 TTACACGTTGCCGCGGAGA 62.210 57.895 33.48 13.93 37.70 3.71
1362 1387 0.668535 CCATGTATGCGTCGAGGAGA 59.331 55.000 9.75 0.00 0.00 3.71
1662 1687 4.998400 TGCTGTTGCCGCGGCTTA 62.998 61.111 45.79 32.45 41.12 3.09
1719 1744 7.388776 CCATTAGATCCGCAAATTAATGAGAGA 59.611 37.037 9.16 0.00 35.00 3.10
1734 1759 3.142951 AGACTCTCGACCATTAGATCCG 58.857 50.000 0.00 0.00 0.00 4.18
2098 2283 9.944663 GTATCGCTTGATATTTACAAAATGGAA 57.055 29.630 0.00 0.00 36.96 3.53
2100 2285 9.385902 CTGTATCGCTTGATATTTACAAAATGG 57.614 33.333 0.00 0.00 36.96 3.16
2296 2595 3.057315 TCTTATGCAAGCAGCCAAACTTC 60.057 43.478 0.00 0.00 44.83 3.01
2297 2596 2.892852 TCTTATGCAAGCAGCCAAACTT 59.107 40.909 0.00 0.00 44.83 2.66
2321 2623 8.128322 AGCTATCCATATACTACTCTGTTTGG 57.872 38.462 0.00 0.00 0.00 3.28
2356 2721 4.501915 CCAATCTGTGCACTGGAACAAAAT 60.502 41.667 21.80 5.14 38.70 1.82
2436 2801 9.585099 GCAAATCCATGATACATTAAAACAAGA 57.415 29.630 0.00 0.00 0.00 3.02
2439 2804 9.149225 GTTGCAAATCCATGATACATTAAAACA 57.851 29.630 0.00 0.00 0.00 2.83
2509 2874 7.044181 TGTCTCTAATCATTTGTAGCTTCAGG 58.956 38.462 0.00 0.00 0.00 3.86
2618 2983 8.129211 GCCGAAGCAAAACTCTATACAAATAAT 58.871 33.333 0.00 0.00 39.53 1.28
2680 3046 7.816031 TGACTGTACGAGAATACCCTTTTTAAG 59.184 37.037 0.00 0.00 0.00 1.85
2718 3084 4.914177 AAGTTGGGAATACGGGTTAGAA 57.086 40.909 0.00 0.00 0.00 2.10
2735 3101 1.228033 CCCCCACGGACGAAAAGTT 60.228 57.895 0.00 0.00 0.00 2.66
2736 3102 2.428622 CCCCCACGGACGAAAAGT 59.571 61.111 0.00 0.00 0.00 2.66
2737 3103 1.964373 CACCCCCACGGACGAAAAG 60.964 63.158 0.00 0.00 34.64 2.27
2738 3104 2.111460 CACCCCCACGGACGAAAA 59.889 61.111 0.00 0.00 34.64 2.29
2747 3113 2.859971 TTACACCCCCACCCCCAC 60.860 66.667 0.00 0.00 0.00 4.61
2748 3114 2.859971 GTTACACCCCCACCCCCA 60.860 66.667 0.00 0.00 0.00 4.96
2754 3180 0.927767 ACTGTTTGGTTACACCCCCA 59.072 50.000 0.00 0.00 37.50 4.96
2760 3186 3.071023 CCAGAGAGGACTGTTTGGTTACA 59.929 47.826 0.00 0.00 41.22 2.41
2762 3188 3.314693 ACCAGAGAGGACTGTTTGGTTA 58.685 45.455 5.94 0.00 41.22 2.85
2848 3289 9.192642 TCCTCGTATATATTATTCGGGATCAAA 57.807 33.333 0.00 0.00 0.00 2.69
2849 3290 8.756486 TCCTCGTATATATTATTCGGGATCAA 57.244 34.615 0.00 0.00 0.00 2.57
2873 3315 5.776744 AGATCAAAAGAGCAAACCACAATC 58.223 37.500 0.00 0.00 0.00 2.67
2940 3382 9.646427 GAAGAAGATCAAACAATAGTCTGTACT 57.354 33.333 0.00 0.00 39.91 2.73
2985 3427 2.880890 ACCAAGTCTGATGCACTGAAAC 59.119 45.455 0.00 0.00 0.00 2.78
3072 3514 5.750352 ATGAAAATTGAGCTCCATTGGTT 57.250 34.783 13.38 5.61 0.00 3.67
3171 3613 2.035321 GGAAAGCTAGGATCGACAGGAG 59.965 54.545 0.00 0.00 0.00 3.69
3178 3620 1.409427 ACGGAAGGAAAGCTAGGATCG 59.591 52.381 0.00 0.00 0.00 3.69
3530 3975 3.440173 GCAAGCTAAATACTGAACAGGCA 59.560 43.478 6.76 0.00 0.00 4.75
3553 3998 6.948309 ACATTTAGGCAAGAAAAGATGTAGGT 59.052 34.615 0.00 0.00 0.00 3.08
3555 4000 7.820648 ACACATTTAGGCAAGAAAAGATGTAG 58.179 34.615 0.00 0.00 0.00 2.74
4388 4833 4.832248 TGCCTTTCTCCAATACAGTACAG 58.168 43.478 0.00 0.00 0.00 2.74
4545 5030 0.593128 AGCAAAGCTAACAGGTTGCG 59.407 50.000 11.73 0.00 36.99 4.85
4572 5057 2.726821 ACCTATGCAATGAACCACCTG 58.273 47.619 0.00 0.00 0.00 4.00
4573 5058 3.091545 CAACCTATGCAATGAACCACCT 58.908 45.455 0.00 0.00 0.00 4.00
4574 5059 2.166254 CCAACCTATGCAATGAACCACC 59.834 50.000 0.00 0.00 0.00 4.61
4575 5060 2.417243 GCCAACCTATGCAATGAACCAC 60.417 50.000 0.00 0.00 0.00 4.16
4576 5061 1.824230 GCCAACCTATGCAATGAACCA 59.176 47.619 0.00 0.00 0.00 3.67
4577 5062 1.824230 TGCCAACCTATGCAATGAACC 59.176 47.619 0.00 0.00 33.87 3.62
4578 5063 3.119029 ACATGCCAACCTATGCAATGAAC 60.119 43.478 0.00 0.00 41.50 3.18
4579 5064 3.098377 ACATGCCAACCTATGCAATGAA 58.902 40.909 0.00 0.00 41.50 2.57
4580 5065 2.737544 ACATGCCAACCTATGCAATGA 58.262 42.857 0.00 0.00 41.50 2.57
4581 5066 3.633525 ACTACATGCCAACCTATGCAATG 59.366 43.478 0.00 0.00 41.50 2.82
4582 5067 3.885297 GACTACATGCCAACCTATGCAAT 59.115 43.478 0.00 0.00 41.50 3.56
4583 5068 3.278574 GACTACATGCCAACCTATGCAA 58.721 45.455 0.00 0.00 41.50 4.08
4584 5069 2.421388 GGACTACATGCCAACCTATGCA 60.421 50.000 0.00 0.00 42.52 3.96
4585 5070 2.222027 GGACTACATGCCAACCTATGC 58.778 52.381 0.00 0.00 0.00 3.14
4586 5071 2.851195 GGGACTACATGCCAACCTATG 58.149 52.381 0.00 0.00 39.10 2.23
4594 5079 0.179000 CCAGACTGGGACTACATGCC 59.821 60.000 14.26 0.00 39.94 4.40
4595 5080 0.462759 GCCAGACTGGGACTACATGC 60.463 60.000 23.09 1.23 38.19 4.06
4596 5081 0.904649 TGCCAGACTGGGACTACATG 59.095 55.000 23.09 0.00 38.19 3.21
4597 5082 1.885049 ATGCCAGACTGGGACTACAT 58.115 50.000 23.09 13.73 41.95 2.29
4598 5083 1.555075 GAATGCCAGACTGGGACTACA 59.445 52.381 23.09 12.01 41.95 2.74
4599 5084 1.834263 AGAATGCCAGACTGGGACTAC 59.166 52.381 23.09 14.22 41.95 2.73
4600 5085 1.833630 CAGAATGCCAGACTGGGACTA 59.166 52.381 23.09 0.00 41.95 2.59
4601 5086 0.617413 CAGAATGCCAGACTGGGACT 59.383 55.000 23.09 10.63 41.95 3.85
4602 5087 0.615331 TCAGAATGCCAGACTGGGAC 59.385 55.000 23.09 9.46 41.95 4.46
4603 5088 1.003580 GTTCAGAATGCCAGACTGGGA 59.996 52.381 23.09 21.14 43.78 4.37
4604 5089 1.004044 AGTTCAGAATGCCAGACTGGG 59.996 52.381 23.09 5.26 38.19 4.45
4605 5090 2.354259 GAGTTCAGAATGCCAGACTGG 58.646 52.381 17.83 17.83 41.55 4.00
4606 5091 2.027377 AGGAGTTCAGAATGCCAGACTG 60.027 50.000 0.00 0.00 34.76 3.51
4607 5092 2.027377 CAGGAGTTCAGAATGCCAGACT 60.027 50.000 6.93 0.00 34.76 3.24
4635 5120 3.244353 ACAAATCTCAGTAGCAGCACACT 60.244 43.478 0.00 0.00 0.00 3.55
4636 5121 3.070018 ACAAATCTCAGTAGCAGCACAC 58.930 45.455 0.00 0.00 0.00 3.82
4637 5122 3.244181 TGACAAATCTCAGTAGCAGCACA 60.244 43.478 0.00 0.00 0.00 4.57
4641 5126 6.592994 TCTGAAATGACAAATCTCAGTAGCAG 59.407 38.462 0.00 0.00 35.93 4.24
4646 5131 7.664731 AGAACATCTGAAATGACAAATCTCAGT 59.335 33.333 0.00 0.00 35.93 3.41
4693 5196 1.206132 ACTCAACTGACACGACACCAA 59.794 47.619 0.00 0.00 0.00 3.67
4700 5203 5.907197 ACTCAATTTACTCAACTGACACG 57.093 39.130 0.00 0.00 0.00 4.49
4713 5216 8.259049 ACCAAAATCGACGAATACTCAATTTA 57.741 30.769 0.00 0.00 0.00 1.40
4729 5232 0.953471 TCGGCACTGGACCAAAATCG 60.953 55.000 0.00 0.00 0.00 3.34
4731 5234 1.234615 CGTCGGCACTGGACCAAAAT 61.235 55.000 0.00 0.00 0.00 1.82
5095 5605 3.064931 GACAAGTGGGAAGGAAACTACG 58.935 50.000 0.00 0.00 42.68 3.51
5096 5606 4.081322 TGACAAGTGGGAAGGAAACTAC 57.919 45.455 0.00 0.00 42.68 2.73
5097 5607 4.165372 AGTTGACAAGTGGGAAGGAAACTA 59.835 41.667 0.00 0.00 42.68 2.24
5099 5609 3.288092 AGTTGACAAGTGGGAAGGAAAC 58.712 45.455 0.00 0.00 0.00 2.78
5100 5610 3.662759 AGTTGACAAGTGGGAAGGAAA 57.337 42.857 0.00 0.00 0.00 3.13
5101 5611 3.287222 CAAGTTGACAAGTGGGAAGGAA 58.713 45.455 0.00 0.00 0.00 3.36
5102 5612 2.930950 CAAGTTGACAAGTGGGAAGGA 58.069 47.619 0.00 0.00 0.00 3.36
5103 5613 1.338020 GCAAGTTGACAAGTGGGAAGG 59.662 52.381 7.16 0.00 0.00 3.46
5104 5614 2.023673 TGCAAGTTGACAAGTGGGAAG 58.976 47.619 7.16 0.00 0.00 3.46
5105 5615 2.136298 TGCAAGTTGACAAGTGGGAA 57.864 45.000 7.16 0.00 0.00 3.97
5106 5616 2.363306 ATGCAAGTTGACAAGTGGGA 57.637 45.000 7.16 0.00 0.00 4.37
5107 5617 3.507233 ACATATGCAAGTTGACAAGTGGG 59.493 43.478 7.16 0.00 0.00 4.61
5108 5618 4.216042 TCACATATGCAAGTTGACAAGTGG 59.784 41.667 7.16 0.00 0.00 4.00
5109 5619 5.361135 TCACATATGCAAGTTGACAAGTG 57.639 39.130 7.16 13.32 0.00 3.16
5110 5620 5.124457 GGATCACATATGCAAGTTGACAAGT 59.876 40.000 7.16 3.02 0.00 3.16
5111 5621 5.124297 TGGATCACATATGCAAGTTGACAAG 59.876 40.000 7.16 2.46 0.00 3.16
5112 5622 5.008980 TGGATCACATATGCAAGTTGACAA 58.991 37.500 7.16 0.00 0.00 3.18
5113 5623 4.587891 TGGATCACATATGCAAGTTGACA 58.412 39.130 7.16 4.73 0.00 3.58
5114 5624 5.278169 GGATGGATCACATATGCAAGTTGAC 60.278 44.000 7.16 0.00 40.72 3.18
5115 5625 4.823442 GGATGGATCACATATGCAAGTTGA 59.177 41.667 7.16 0.00 40.72 3.18
5116 5626 4.581409 TGGATGGATCACATATGCAAGTTG 59.419 41.667 1.58 0.00 40.72 3.16
5117 5627 4.795469 TGGATGGATCACATATGCAAGTT 58.205 39.130 1.58 0.00 40.72 2.66
5118 5628 4.442401 TGGATGGATCACATATGCAAGT 57.558 40.909 1.58 0.00 40.72 3.16
5119 5629 6.432607 GTATGGATGGATCACATATGCAAG 57.567 41.667 1.58 0.00 40.72 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.