AutoCloner

Multiple sequence alignment - TraesCS2A01G291300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G291300	chr2A	100.000	2955	0	0	1	2955	502065491	502062537	0.000000e+00	5457
1	TraesCS2A01G291300	chr2A	79.817	218	33	9	1173	1386	71587239	71587449	6.600000e-32	148
2	TraesCS2A01G291300	chr2D	93.006	1916	102	18	916	2814	371242732	371240832	0.000000e+00	2767
3	TraesCS2A01G291300	chr2D	92.593	135	10	0	2821	2955	371236328	371236194	8.360000e-46	195
4	TraesCS2A01G291300	chr2B	94.703	1095	37	8	916	1989	440356726	440355632	0.000000e+00	1681
5	TraesCS2A01G291300	chr2B	88.578	928	63	20	2040	2955	440355626	440354730	0.000000e+00	1086
6	TraesCS2A01G291300	chr2B	83.601	933	104	21	1	904	146909102	146910014	0.000000e+00	830
7	TraesCS2A01G291300	chr2B	78.281	221	31	14	1173	1386	110370935	110371145	3.090000e-25	126
8	TraesCS2A01G291300	chr3A	98.446	901	13	1	1	901	457492280	457493179	0.000000e+00	1585
9	TraesCS2A01G291300	chr6B	96.235	903	34	0	1	903	145347975	145347073	0.000000e+00	1480
10	TraesCS2A01G291300	chr6B	89.514	782	62	11	1	765	11009407	11010185	0.000000e+00	972
11	TraesCS2A01G291300	chr5B	83.996	931	111	19	1	903	300498032	300498952	0.000000e+00	859
12	TraesCS2A01G291300	chr5B	83.673	735	71	24	184	903	38915657	38914957	0.000000e+00	647
13	TraesCS2A01G291300	chr5B	84.385	602	76	14	51	647	711255908	711256496	2.550000e-160	575
14	TraesCS2A01G291300	chr5B	84.054	370	36	7	391	739	162343768	162344135	4.720000e-88	335
15	TraesCS2A01G291300	chr4B	81.330	932	91	42	1	903	538951421	538952298	0.000000e+00	680
16	TraesCS2A01G291300	chr1B	84.032	739	73	24	179	904	98384639	98385345	0.000000e+00	669
17	TraesCS2A01G291300	chr1B	84.032	739	73	24	179	904	98411935	98412641	0.000000e+00	669
18	TraesCS2A01G291300	chr1B	83.897	739	74	24	179	904	98431990	98432696	0.000000e+00	664
19	TraesCS2A01G291300	chr5D	84.194	639	90	9	1	633	447762636	447762003	7.000000e-171	610
20	TraesCS2A01G291300	chr3D	86.609	463	53	7	1	457	340310613	340311072	1.220000e-138	503

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G291300	chr2A	502062537	502065491	2954	True	5457.0	5457	100.0000	1	2955	1	chr2A.!!$R1	2954
1	TraesCS2A01G291300	chr2D	371240832	371242732	1900	True	2767.0	2767	93.0060	916	2814	1	chr2D.!!$R2	1898
2	TraesCS2A01G291300	chr2B	440354730	440356726	1996	True	1383.5	1681	91.6405	916	2955	2	chr2B.!!$R1	2039
3	TraesCS2A01G291300	chr2B	146909102	146910014	912	False	830.0	830	83.6010	1	904	1	chr2B.!!$F2	903
4	TraesCS2A01G291300	chr3A	457492280	457493179	899	False	1585.0	1585	98.4460	1	901	1	chr3A.!!$F1	900
5	TraesCS2A01G291300	chr6B	145347073	145347975	902	True	1480.0	1480	96.2350	1	903	1	chr6B.!!$R1	902
6	TraesCS2A01G291300	chr6B	11009407	11010185	778	False	972.0	972	89.5140	1	765	1	chr6B.!!$F1	764
7	TraesCS2A01G291300	chr5B	300498032	300498952	920	False	859.0	859	83.9960	1	903	1	chr5B.!!$F2	902
8	TraesCS2A01G291300	chr5B	38914957	38915657	700	True	647.0	647	83.6730	184	903	1	chr5B.!!$R1	719
9	TraesCS2A01G291300	chr5B	711255908	711256496	588	False	575.0	575	84.3850	51	647	1	chr5B.!!$F3	596
10	TraesCS2A01G291300	chr4B	538951421	538952298	877	False	680.0	680	81.3300	1	903	1	chr4B.!!$F1	902
11	TraesCS2A01G291300	chr1B	98384639	98385345	706	False	669.0	669	84.0320	179	904	1	chr1B.!!$F1	725
12	TraesCS2A01G291300	chr1B	98411935	98412641	706	False	669.0	669	84.0320	179	904	1	chr1B.!!$F2	725
13	TraesCS2A01G291300	chr1B	98431990	98432696	706	False	664.0	664	83.8970	179	904	1	chr1B.!!$F3	725
14	TraesCS2A01G291300	chr5D	447762003	447762636	633	True	610.0	610	84.1940	1	633	1	chr5D.!!$R1	632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
907	956	3.986435	ACGGACAATTACCTAGTACCCT	58.014	45.455	0.0	0.0	0.0	4.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2834	2937	0.034477	TTCTTCAAATCGGGAGGGGC	60.034	55.0	0.0	0.0	0.0	5.8	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
161	170	9.458374	GTTGAATTCGAATGTTCTTTTAAGGAA	57.542	29.630	12.25	0.00	0.00	3.36
712	754	4.503296	GGATGATTGTAAGCCGGATGTACT	60.503	45.833	5.05	0.00	0.00	2.73
904	953	5.485662	ACGTACGGACAATTACCTAGTAC	57.514	43.478	21.06	0.00	0.00	2.73
905	954	4.335594	ACGTACGGACAATTACCTAGTACC	59.664	45.833	21.06	0.00	31.99	3.34
906	955	4.261197	CGTACGGACAATTACCTAGTACCC	60.261	50.000	7.57	0.00	31.99	3.69
907	956	3.986435	ACGGACAATTACCTAGTACCCT	58.014	45.455	0.00	0.00	0.00	4.34
908	957	4.356436	ACGGACAATTACCTAGTACCCTT	58.644	43.478	0.00	0.00	0.00	3.95
909	958	5.518865	ACGGACAATTACCTAGTACCCTTA	58.481	41.667	0.00	0.00	0.00	2.69
910	959	5.957774	ACGGACAATTACCTAGTACCCTTAA	59.042	40.000	0.00	0.00	0.00	1.85
911	960	6.440328	ACGGACAATTACCTAGTACCCTTAAA	59.560	38.462	0.00	0.00	0.00	1.52
912	961	7.038373	ACGGACAATTACCTAGTACCCTTAAAA	60.038	37.037	0.00	0.00	0.00	1.52
913	962	7.823799	CGGACAATTACCTAGTACCCTTAAAAA	59.176	37.037	0.00	0.00	0.00	1.94
1014	1063	2.044252	CCCATGGCAAGCAGCTCT	60.044	61.111	6.09	0.00	44.79	4.09
1082	1159	5.388408	TTTTCCAGTTTTTGTACCGTGTT	57.612	34.783	0.00	0.00	0.00	3.32
1083	1160	4.358494	TTCCAGTTTTTGTACCGTGTTG	57.642	40.909	0.00	0.00	0.00	3.33
1084	1161	3.607741	TCCAGTTTTTGTACCGTGTTGA	58.392	40.909	0.00	0.00	0.00	3.18
1085	1162	4.200874	TCCAGTTTTTGTACCGTGTTGAT	58.799	39.130	0.00	0.00	0.00	2.57
1086	1163	5.366460	TCCAGTTTTTGTACCGTGTTGATA	58.634	37.500	0.00	0.00	0.00	2.15
1087	1164	5.236911	TCCAGTTTTTGTACCGTGTTGATAC	59.763	40.000	0.00	0.00	0.00	2.24
1088	1165	5.007823	CCAGTTTTTGTACCGTGTTGATACA	59.992	40.000	0.00	0.00	0.00	2.29
1089	1166	6.458478	CCAGTTTTTGTACCGTGTTGATACAA	60.458	38.462	0.00	0.00	35.69	2.41
1102	1179	7.337718	CGTGTTGATACAATGATACTTGCTAC	58.662	38.462	0.00	0.00	35.69	3.58
1154	1232	4.094830	ACGTGAAGGTGAGGGTTATTTT	57.905	40.909	0.00	0.00	0.00	1.82
1192	1270	4.641645	CTGGACGGCAAGGTGGCA	62.642	66.667	0.00	0.00	43.94	4.92
1862	1940	2.262915	CGGTGCTCTTTCTCGCCT	59.737	61.111	0.00	0.00	0.00	5.52
1961	2039	5.431765	GCATCTTCAAGGAGTAATGGAGAA	58.568	41.667	0.00	0.00	34.91	2.87
2023	2107	1.161843	GTGGTTGCTTAGCGGCTTAA	58.838	50.000	8.26	0.00	0.00	1.85
2050	2140	6.380995	CCGTACGTGCCATGTACTATTTATA	58.619	40.000	21.45	0.00	38.20	0.98
2072	2162	4.360951	TCGCTTTATCGGGGGAAAATAT	57.639	40.909	0.00	0.00	0.00	1.28
2193	2291	2.436646	AGCAGTTGAATCCGGCGG	60.437	61.111	22.51	22.51	0.00	6.13
2264	2362	0.923358	AATAATGTTGCTCCCGGGGA	59.077	50.000	23.50	16.55	0.00	4.81
2291	2389	4.966787	GTTGGCCGGGCAGTTCCA	62.967	66.667	30.86	13.51	36.21	3.53
2302	2401	1.278127	GGCAGTTCCAGTAGCTACCAA	59.722	52.381	20.31	8.21	34.01	3.67
2305	2404	2.567615	CAGTTCCAGTAGCTACCAACCT	59.432	50.000	20.31	7.46	0.00	3.50
2323	2422	4.415332	GTCCGCGTTCGAGCCTCA	62.415	66.667	4.92	0.00	38.10	3.86
2324	2423	3.676605	TCCGCGTTCGAGCCTCAA	61.677	61.111	4.92	0.00	38.10	3.02
2331	2430	0.318762	GTTCGAGCCTCAACTCTGGT	59.681	55.000	0.00	0.00	34.35	4.00
2333	2432	1.739562	CGAGCCTCAACTCTGGTGC	60.740	63.158	0.00	0.00	34.35	5.01
2352	2451	4.072088	CGGCGCTCGCGAAGTTTT	62.072	61.111	16.26	0.00	43.06	2.43
2382	2483	0.381445	AAACCAACGCGTGTTAACCC	59.619	50.000	14.98	0.00	36.28	4.11
2385	2486	1.202627	ACCAACGCGTGTTAACCCTTA	60.203	47.619	14.98	0.00	36.28	2.69
2410	2511	7.387643	AGGTTGGTCTCATTTTAAGTACTCTC	58.612	38.462	0.00	0.00	0.00	3.20
2411	2512	6.310711	GGTTGGTCTCATTTTAAGTACTCTCG	59.689	42.308	0.00	0.00	0.00	4.04
2474	2575	0.250424	GCTTTGGGGTTTGCTTGCAT	60.250	50.000	0.00	0.00	0.00	3.96
2478	2579	1.912763	GGGGTTTGCTTGCATCCCA	60.913	57.895	25.50	0.82	39.85	4.37
2531	2634	2.475519	CCGCGTTAGCATTTAGTTGTGG	60.476	50.000	4.92	0.00	45.49	4.17
2557	2660	1.962100	TGTTTGCAACATGAGCCATGA	59.038	42.857	18.41	0.00	43.81	3.07
2565	2668	1.064979	ACATGAGCCATGATGCACTCA	60.065	47.619	18.41	15.62	43.81	3.41
2566	2669	1.604278	CATGAGCCATGATGCACTCAG	59.396	52.381	17.45	9.20	43.81	3.35
2567	2670	0.906775	TGAGCCATGATGCACTCAGA	59.093	50.000	11.00	0.00	37.28	3.27
2568	2671	1.279846	TGAGCCATGATGCACTCAGAA	59.720	47.619	11.00	0.00	37.28	3.02
2569	2672	2.290450	TGAGCCATGATGCACTCAGAAA	60.290	45.455	11.00	0.00	37.28	2.52
2570	2673	2.950309	GAGCCATGATGCACTCAGAAAT	59.050	45.455	8.32	0.00	37.28	2.17
2575	2678	5.475719	CCATGATGCACTCAGAAATTTTGT	58.524	37.500	0.00	0.00	37.28	2.83
2596	2699	5.610398	TGTAATATGGATCATGTCGCACTT	58.390	37.500	0.00	0.00	0.00	3.16
2598	2701	2.408271	ATGGATCATGTCGCACTTGT	57.592	45.000	0.00	0.00	0.00	3.16
2634	2737	5.757320	TCAAAACATTTTCGACCATTGCAAT	59.243	32.000	5.99	5.99	0.00	3.56
2651	2754	5.774498	TGCAATGTGTGGTATGTTGTAAA	57.226	34.783	0.00	0.00	0.00	2.01
2705	2808	2.725312	ATGCCTCCTCGCACGTGAT	61.725	57.895	22.23	0.00	42.70	3.06
2761	2864	2.203437	GCACCCCAGAAACCCGTT	60.203	61.111	0.00	0.00	0.00	4.44
2779	2882	4.838152	GAGCAAGGGATCGCGCCA	62.838	66.667	0.00	0.00	0.00	5.69
2782	2885	4.776322	CAAGGGATCGCGCCACCA	62.776	66.667	0.00	0.00	0.00	4.17
2802	2905	3.257873	CCAGATGACCAAGATCTATCGCT	59.742	47.826	0.00	0.00	0.00	4.93
2826	2929	3.054503	CACTGCCTGAGTGCCTGC	61.055	66.667	0.00	0.00	45.72	4.85
2827	2930	3.247648	ACTGCCTGAGTGCCTGCT	61.248	61.111	0.00	0.00	31.75	4.24
2828	2931	1.915266	ACTGCCTGAGTGCCTGCTA	60.915	57.895	0.00	0.00	31.75	3.49
2829	2932	1.270414	ACTGCCTGAGTGCCTGCTAT	61.270	55.000	0.00	0.00	31.75	2.97
2830	2933	0.532417	CTGCCTGAGTGCCTGCTATC	60.532	60.000	0.00	0.00	0.00	2.08
2831	2934	0.979709	TGCCTGAGTGCCTGCTATCT	60.980	55.000	0.00	0.00	0.00	1.98
2832	2935	0.249826	GCCTGAGTGCCTGCTATCTC	60.250	60.000	0.00	0.00	0.00	2.75
2833	2936	1.412079	CCTGAGTGCCTGCTATCTCT	58.588	55.000	9.47	0.00	0.00	3.10
2834	2937	1.068895	CCTGAGTGCCTGCTATCTCTG	59.931	57.143	9.47	8.85	0.00	3.35
2835	2938	0.463204	TGAGTGCCTGCTATCTCTGC	59.537	55.000	9.47	0.00	0.00	4.26
2859	2962	5.163550	CCCCTCCCGATTTGAAGAAAATAAC	60.164	44.000	0.00	0.00	38.64	1.89
2873	2976	5.617252	AGAAAATAACGAGAAAGGGTGTGA	58.383	37.500	0.00	0.00	0.00	3.58
2876	2979	2.528041	AACGAGAAAGGGTGTGAGAC	57.472	50.000	0.00	0.00	0.00	3.36
2878	2981	1.009389	CGAGAAAGGGTGTGAGACGC	61.009	60.000	0.00	0.00	37.80	5.19
2879	2982	1.006102	AGAAAGGGTGTGAGACGCG	60.006	57.895	3.53	3.53	42.37	6.01
2902	3005	1.226974	CCACCGCCGTAGATCACAG	60.227	63.158	0.00	0.00	0.00	3.66
2905	3008	2.655364	CGCCGTAGATCACAGCCG	60.655	66.667	0.00	0.00	0.00	5.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
485	503	4.402155	TCAATGGTTTTCTTGCAGACACTT	59.598	37.500	0.00	0.00	0.00	3.16
712	754	5.129650	TCCATCCTCACCATTGTCGTTAATA	59.870	40.000	0.00	0.00	0.00	0.98
810	857	2.928334	AGGATCCTCATGCACATCAAC	58.072	47.619	9.02	0.00	0.00	3.18
855	902	5.772393	ACGGGGCATAAATATCCTATTGA	57.228	39.130	0.00	0.00	0.00	2.57
885	934	5.129368	AGGGTACTAGGTAATTGTCCGTA	57.871	43.478	0.00	0.00	0.00	4.02
912	961	9.363763	GACTCGTTTTATAGTACTAGGCTTTTT	57.636	33.333	8.85	0.00	0.00	1.94
913	962	8.526147	TGACTCGTTTTATAGTACTAGGCTTTT	58.474	33.333	8.85	0.00	0.00	2.27
914	963	7.972832	GTGACTCGTTTTATAGTACTAGGCTTT	59.027	37.037	8.85	0.00	0.00	3.51
1014	1063	2.434185	GCGGCAGGAACGACATCA	60.434	61.111	0.00	0.00	0.00	3.07
1082	1159	7.328493	GCATACGTAGCAAGTATCATTGTATCA	59.672	37.037	0.08	0.00	32.96	2.15
1083	1160	7.328493	TGCATACGTAGCAAGTATCATTGTATC	59.672	37.037	14.60	0.00	39.39	2.24
1084	1161	7.151976	TGCATACGTAGCAAGTATCATTGTAT	58.848	34.615	14.60	0.00	39.39	2.29
1085	1162	6.508777	TGCATACGTAGCAAGTATCATTGTA	58.491	36.000	14.60	0.00	39.39	2.41
1086	1163	5.356426	TGCATACGTAGCAAGTATCATTGT	58.644	37.500	14.60	0.00	39.39	2.71
1087	1164	5.905480	TGCATACGTAGCAAGTATCATTG	57.095	39.130	14.60	0.00	39.39	2.82
1088	1165	5.991606	ACATGCATACGTAGCAAGTATCATT	59.008	36.000	19.18	4.01	46.27	2.57
1089	1166	5.541845	ACATGCATACGTAGCAAGTATCAT	58.458	37.500	19.18	4.54	46.27	2.45
1102	1179	1.003008	TGCGCCAATTACATGCATACG	60.003	47.619	4.18	0.00	0.00	3.06
1154	1232	0.510790	CTGCAACGTACGCACATGAA	59.489	50.000	16.72	3.34	35.08	2.57
1345	1423	0.679505	CCTCCTCTTTGGTGACGTCA	59.320	55.000	15.76	15.76	37.07	4.35
1846	1924	2.394563	GCAGGCGAGAAAGAGCACC	61.395	63.158	0.00	0.00	34.54	5.01
1961	2039	5.989168	TGGATGCATAGTTTAAATCGATCGT	59.011	36.000	15.94	0.00	0.00	3.73
2050	2140	2.721425	TTTTCCCCCGATAAAGCGAT	57.279	45.000	0.00	0.00	0.00	4.58
2072	2162	1.801771	CGCAAATCACGTTGGAGGTAA	59.198	47.619	0.00	0.00	0.00	2.85
2287	2385	2.565834	GACAGGTTGGTAGCTACTGGAA	59.434	50.000	22.74	10.88	33.63	3.53
2289	2387	1.207329	GGACAGGTTGGTAGCTACTGG	59.793	57.143	22.74	9.06	33.63	4.00
2290	2388	1.135083	CGGACAGGTTGGTAGCTACTG	60.135	57.143	22.74	14.94	35.40	2.74
2291	2389	1.183549	CGGACAGGTTGGTAGCTACT	58.816	55.000	22.74	1.33	0.00	2.57
2302	2401	4.719369	GCTCGAACGCGGACAGGT	62.719	66.667	12.47	0.00	38.28	4.00
2305	2404	4.415332	GAGGCTCGAACGCGGACA	62.415	66.667	12.47	0.00	38.28	4.02
2366	2465	1.461897	CTAAGGGTTAACACGCGTTGG	59.538	52.381	10.22	0.71	40.82	3.77
2382	2483	9.152595	GAGTACTTAAAATGAGACCAACCTAAG	57.847	37.037	0.00	0.00	0.00	2.18
2385	2486	7.317722	AGAGTACTTAAAATGAGACCAACCT	57.682	36.000	0.00	0.00	0.00	3.50
2435	2536	3.691118	AGCGCATGTCTCATGTTACAAAT	59.309	39.130	11.47	0.00	0.00	2.32
2495	2598	4.277593	CGGCCCAACAAGCGCAAA	62.278	61.111	11.47	0.00	0.00	3.68
2557	2660	8.970020	TCCATATTACAAAATTTCTGAGTGCAT	58.030	29.630	0.00	0.00	0.00	3.96
2566	2669	8.905702	GCGACATGATCCATATTACAAAATTTC	58.094	33.333	0.00	0.00	0.00	2.17
2567	2670	8.412456	TGCGACATGATCCATATTACAAAATTT	58.588	29.630	0.00	0.00	0.00	1.82
2568	2671	7.862372	GTGCGACATGATCCATATTACAAAATT	59.138	33.333	0.00	0.00	0.00	1.82
2569	2672	7.229306	AGTGCGACATGATCCATATTACAAAAT	59.771	33.333	0.00	0.00	0.00	1.82
2570	2673	6.542005	AGTGCGACATGATCCATATTACAAAA	59.458	34.615	0.00	0.00	0.00	2.44
2575	2678	5.466393	CACAAGTGCGACATGATCCATATTA	59.534	40.000	0.00	0.00	0.00	0.98
2596	2699	4.462508	TGTTTTGAAGGTTGCAATCACA	57.537	36.364	13.22	8.91	0.00	3.58
2598	2701	6.238049	CGAAAATGTTTTGAAGGTTGCAATCA	60.238	34.615	13.22	4.67	0.00	2.57
2634	2737	3.203716	TGCGTTTACAACATACCACACA	58.796	40.909	0.00	0.00	0.00	3.72
2651	2754	2.251642	GCGAAGGGAGTTGTTGCGT	61.252	57.895	0.00	0.00	0.00	5.24
2705	2808	0.878416	GCGTGGTATTGGTGAAAGCA	59.122	50.000	0.00	0.00	46.28	3.91
2743	2846	3.063197	AACGGGTTTCTGGGGTGCA	62.063	57.895	0.00	0.00	0.00	4.57
2761	2864	4.838152	GGCGCGATCCCTTGCTCA	62.838	66.667	12.10	0.00	0.00	4.26
2779	2882	3.006323	GCGATAGATCTTGGTCATCTGGT	59.994	47.826	0.00	0.00	39.76	4.00
2818	2921	1.694133	GGGCAGAGATAGCAGGCACT	61.694	60.000	0.00	0.00	43.88	4.40
2819	2922	1.227793	GGGCAGAGATAGCAGGCAC	60.228	63.158	0.00	0.00	0.00	5.01
2820	2923	2.446848	GGGGCAGAGATAGCAGGCA	61.447	63.158	0.00	0.00	0.00	4.75
2821	2924	2.110757	GAGGGGCAGAGATAGCAGGC	62.111	65.000	0.00	0.00	0.00	4.85
2823	2926	1.479368	GGGAGGGGCAGAGATAGCAG	61.479	65.000	0.00	0.00	0.00	4.24
2824	2927	1.460305	GGGAGGGGCAGAGATAGCA	60.460	63.158	0.00	0.00	0.00	3.49
2826	2929	0.252012	ATCGGGAGGGGCAGAGATAG	60.252	60.000	0.00	0.00	0.00	2.08
2827	2930	0.191064	AATCGGGAGGGGCAGAGATA	59.809	55.000	0.00	0.00	0.00	1.98
2828	2931	0.695803	AAATCGGGAGGGGCAGAGAT	60.696	55.000	0.00	0.00	0.00	2.75
2829	2932	1.306997	AAATCGGGAGGGGCAGAGA	60.307	57.895	0.00	0.00	0.00	3.10
2830	2933	1.153086	CAAATCGGGAGGGGCAGAG	60.153	63.158	0.00	0.00	0.00	3.35
2831	2934	1.204786	TTCAAATCGGGAGGGGCAGA	61.205	55.000	0.00	0.00	0.00	4.26
2832	2935	0.749454	CTTCAAATCGGGAGGGGCAG	60.749	60.000	0.00	0.00	0.00	4.85
2833	2936	1.204786	TCTTCAAATCGGGAGGGGCA	61.205	55.000	0.00	0.00	0.00	5.36
2834	2937	0.034477	TTCTTCAAATCGGGAGGGGC	60.034	55.000	0.00	0.00	0.00	5.80
2835	2938	2.507407	TTTCTTCAAATCGGGAGGGG	57.493	50.000	0.00	0.00	0.00	4.79
2859	2962	1.009389	GCGTCTCACACCCTTTCTCG	61.009	60.000	0.00	0.00	0.00	4.04
2902	3005	2.491152	CACATTGGGCACATCGGC	59.509	61.111	0.00	0.00	40.20	5.54
2905	3008	0.968405	ACAACCACATTGGGCACATC	59.032	50.000	0.00	0.00	43.37	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.