Multiple sequence alignment - TraesCS2A01G290300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G290300 chr2A 100.000 7580 0 0 1 7580 500523575 500531154 0.000000e+00 13998.0
1 TraesCS2A01G290300 chr2A 97.155 457 9 3 2113 2568 500525229 500525682 0.000000e+00 769.0
2 TraesCS2A01G290300 chr2A 97.155 457 9 3 1655 2108 500525687 500526142 0.000000e+00 769.0
3 TraesCS2A01G290300 chr2A 98.577 281 2 2 2345 2625 147784846 147784568 5.280000e-136 496.0
4 TraesCS2A01G290300 chr2A 98.221 281 4 1 2345 2625 692413377 692413656 2.460000e-134 490.0
5 TraesCS2A01G290300 chr2A 95.516 223 7 2 1888 2108 147784846 147784625 3.360000e-93 353.0
6 TraesCS2A01G290300 chr2A 95.067 223 9 1 1888 2108 692413377 692413599 4.350000e-92 350.0
7 TraesCS2A01G290300 chr2A 88.000 100 12 0 2201 2300 42473963 42473864 1.340000e-22 119.0
8 TraesCS2A01G290300 chr2A 88.000 100 12 0 1744 1843 42473963 42473864 1.340000e-22 119.0
9 TraesCS2A01G290300 chr2A 91.892 37 3 0 1650 1686 80585331 80585295 1.400000e-02 52.8
10 TraesCS2A01G290300 chr2B 95.721 1893 61 9 5589 7469 439222635 439224519 0.000000e+00 3029.0
11 TraesCS2A01G290300 chr2B 95.171 1346 62 2 766 2108 439217379 439218724 0.000000e+00 2122.0
12 TraesCS2A01G290300 chr2B 97.651 1107 20 3 4328 5431 439221204 439222307 0.000000e+00 1895.0
13 TraesCS2A01G290300 chr2B 95.849 1084 24 14 2113 3179 439218269 439219348 0.000000e+00 1733.0
14 TraesCS2A01G290300 chr2B 93.287 998 38 5 3171 4167 439220236 439221205 0.000000e+00 1445.0
15 TraesCS2A01G290300 chr2B 88.372 86 10 0 1756 1841 607109729 607109814 3.740000e-18 104.0
16 TraesCS2A01G290300 chr2B 100.000 45 0 0 5505 5549 439222307 439222351 4.870000e-12 84.2
17 TraesCS2A01G290300 chr2D 94.904 1923 78 9 5561 7469 369478656 369480572 0.000000e+00 2990.0
18 TraesCS2A01G290300 chr2D 93.785 1432 55 13 2623 4032 369468660 369470079 0.000000e+00 2121.0
19 TraesCS2A01G290300 chr2D 89.780 1634 120 18 29 1648 369465496 369467096 0.000000e+00 2049.0
20 TraesCS2A01G290300 chr2D 94.669 1238 52 5 4328 5558 369471705 369472935 0.000000e+00 1908.0
21 TraesCS2A01G290300 chr2D 93.893 262 11 1 1632 1888 369468399 369468660 2.560000e-104 390.0
22 TraesCS2A01G290300 chr2D 93.724 239 9 2 2113 2345 369468422 369468660 3.360000e-93 353.0
23 TraesCS2A01G290300 chr2D 93.923 181 9 2 4165 4343 554128374 554128194 9.690000e-69 272.0
24 TraesCS2A01G290300 chr2D 92.414 145 10 1 4023 4167 369471563 369471706 9.970000e-49 206.0
25 TraesCS2A01G290300 chr2D 88.525 122 8 3 7462 7580 369480598 369480716 7.930000e-30 143.0
26 TraesCS2A01G290300 chr2D 88.298 94 10 1 2201 2294 37611666 37611574 2.240000e-20 111.0
27 TraesCS2A01G290300 chr2D 88.298 94 10 1 1744 1837 37611666 37611574 2.240000e-20 111.0
28 TraesCS2A01G290300 chr2D 100.000 34 0 0 1 34 449481102 449481135 6.350000e-06 63.9
29 TraesCS2A01G290300 chr2D 94.872 39 1 1 1 38 460521655 460521693 8.210000e-05 60.2
30 TraesCS2A01G290300 chr5A 98.909 275 2 1 2349 2623 469115704 469115977 2.460000e-134 490.0
31 TraesCS2A01G290300 chr5A 95.890 219 7 1 1892 2108 469115704 469115922 3.360000e-93 353.0
32 TraesCS2A01G290300 chr5A 95.954 173 5 2 4163 4334 290391864 290391693 5.790000e-71 279.0
33 TraesCS2A01G290300 chr5A 92.105 38 3 0 1650 1687 670008359 670008322 4.000000e-03 54.7
34 TraesCS2A01G290300 chr5A 100.000 28 0 0 1646 1673 374620833 374620860 1.400000e-02 52.8
35 TraesCS2A01G290300 chr6B 96.897 290 8 1 2336 2625 648093165 648092877 1.140000e-132 484.0
36 TraesCS2A01G290300 chr6B 96.121 232 7 1 1879 2108 648093165 648092934 2.000000e-100 377.0
37 TraesCS2A01G290300 chr3B 97.133 279 7 1 2345 2623 612802933 612802656 3.200000e-128 470.0
38 TraesCS2A01G290300 chr3B 95.964 223 7 1 1888 2108 612802933 612802711 2.010000e-95 361.0
39 TraesCS2A01G290300 chr3B 97.006 167 4 1 4164 4329 655849587 655849421 5.790000e-71 279.0
40 TraesCS2A01G290300 chr3B 93.923 181 9 2 4150 4329 242197121 242196942 9.690000e-69 272.0
41 TraesCS2A01G290300 chr4A 96.786 280 8 1 2344 2623 677116959 677117237 4.140000e-127 466.0
42 TraesCS2A01G290300 chr4A 95.982 224 7 1 1887 2108 677116959 677117182 5.590000e-96 363.0
43 TraesCS2A01G290300 chr4A 92.683 41 1 2 1 39 325482267 325482227 2.950000e-04 58.4
44 TraesCS2A01G290300 chr4A 92.500 40 3 0 1650 1689 538903482 538903521 2.950000e-04 58.4
45 TraesCS2A01G290300 chr7A 95.455 286 11 2 2340 2625 413650839 413650556 8.970000e-124 455.0
46 TraesCS2A01G290300 chr7A 93.860 228 11 2 1883 2108 413650839 413650613 2.620000e-89 340.0
47 TraesCS2A01G290300 chr7A 96.491 171 4 2 4166 4335 115807687 115807518 1.610000e-71 281.0
48 TraesCS2A01G290300 chr7A 92.683 41 1 2 1 41 305350792 305350830 2.950000e-04 58.4
49 TraesCS2A01G290300 chr1D 96.429 168 6 0 4162 4329 360358220 360358387 2.080000e-70 278.0
50 TraesCS2A01G290300 chr1D 97.059 34 1 0 1 34 229865307 229865274 2.950000e-04 58.4
51 TraesCS2A01G290300 chr1D 94.595 37 0 2 1 37 359995152 359995186 1.000000e-03 56.5
52 TraesCS2A01G290300 chr1A 95.906 171 6 1 4163 4332 233421509 233421339 7.490000e-70 276.0
53 TraesCS2A01G290300 chr1A 84.810 79 8 2 1776 1854 9605295 9605221 8.160000e-10 76.8
54 TraesCS2A01G290300 chr1A 100.000 34 0 0 1 34 29593691 29593724 6.350000e-06 63.9
55 TraesCS2A01G290300 chr1A 97.143 35 0 1 1 35 215066364 215066331 2.950000e-04 58.4
56 TraesCS2A01G290300 chr7D 95.402 174 5 3 4166 4337 480637705 480637877 2.690000e-69 274.0
57 TraesCS2A01G290300 chr7D 84.559 136 17 2 2164 2299 607050594 607050463 1.720000e-26 132.0
58 TraesCS2A01G290300 chr7D 84.559 136 17 2 1707 1842 607050594 607050463 1.720000e-26 132.0
59 TraesCS2A01G290300 chr7D 89.333 75 6 1 1773 1847 393017501 393017429 8.100000e-15 93.5
60 TraesCS2A01G290300 chr7D 84.783 92 13 1 1756 1847 39518709 39518619 2.910000e-14 91.6
61 TraesCS2A01G290300 chr6D 95.882 170 6 1 4165 4333 206560439 206560270 2.690000e-69 274.0
62 TraesCS2A01G290300 chr6D 85.897 78 11 0 1760 1837 31826668 31826745 4.870000e-12 84.2
63 TraesCS2A01G290300 chr6D 97.059 34 1 0 1 34 107739787 107739754 2.950000e-04 58.4
64 TraesCS2A01G290300 chr6D 97.059 34 1 0 1 34 290347035 290347002 2.950000e-04 58.4
65 TraesCS2A01G290300 chr6D 89.362 47 1 4 1 43 408109147 408109193 1.000000e-03 56.5
66 TraesCS2A01G290300 chr5B 89.796 98 10 0 2201 2298 105698871 105698774 7.980000e-25 126.0
67 TraesCS2A01G290300 chr5B 89.796 98 10 0 1744 1841 105698871 105698774 7.980000e-25 126.0
68 TraesCS2A01G290300 chr5B 83.721 129 17 2 2170 2298 103467729 103467605 1.340000e-22 119.0
69 TraesCS2A01G290300 chr5B 87.755 98 12 0 1744 1841 103467702 103467605 1.730000e-21 115.0
70 TraesCS2A01G290300 chr1B 88.889 99 6 4 1742 1837 249519878 249519974 4.810000e-22 117.0
71 TraesCS2A01G290300 chr1B 88.889 99 6 4 2199 2294 249519878 249519974 4.810000e-22 117.0
72 TraesCS2A01G290300 chr1B 94.737 38 2 0 1 38 400527814 400527777 8.210000e-05 60.2
73 TraesCS2A01G290300 chr7B 85.714 84 12 0 4423 4506 262004943 262004860 1.050000e-13 89.8
74 TraesCS2A01G290300 chr7B 94.595 37 2 0 475 511 412815154 412815190 2.950000e-04 58.4
75 TraesCS2A01G290300 chr7B 100.000 29 0 0 1650 1678 730987383 730987411 4.000000e-03 54.7
76 TraesCS2A01G290300 chr6A 88.333 60 7 0 1787 1846 595027915 595027856 1.060000e-08 73.1
77 TraesCS2A01G290300 chr4D 97.297 37 1 0 1 37 311044316 311044352 6.350000e-06 63.9
78 TraesCS2A01G290300 chr4D 100.000 31 0 0 1 31 354774225 354774255 2.950000e-04 58.4
79 TraesCS2A01G290300 chr4D 100.000 30 0 0 1 30 57753161 57753132 1.000000e-03 56.5
80 TraesCS2A01G290300 chr4D 94.444 36 2 0 1 36 74119976 74119941 1.000000e-03 56.5
81 TraesCS2A01G290300 chr4D 96.970 33 1 0 1 33 97368947 97368979 1.000000e-03 56.5
82 TraesCS2A01G290300 chr4D 100.000 30 0 0 1 30 105098905 105098934 1.000000e-03 56.5
83 TraesCS2A01G290300 chr4D 94.444 36 2 0 1 36 114970288 114970253 1.000000e-03 56.5
84 TraesCS2A01G290300 chr4D 100.000 30 0 0 1 30 127965681 127965652 1.000000e-03 56.5
85 TraesCS2A01G290300 chr4D 94.595 37 1 1 1 37 170584269 170584234 1.000000e-03 56.5
86 TraesCS2A01G290300 chr4D 100.000 30 0 0 1 30 273249053 273249082 1.000000e-03 56.5
87 TraesCS2A01G290300 chr4D 92.308 39 2 1 1 39 190095965 190095928 4.000000e-03 54.7
88 TraesCS2A01G290300 chr4D 90.244 41 4 0 1 41 417685750 417685710 4.000000e-03 54.7
89 TraesCS2A01G290300 chr4B 94.737 38 2 0 1650 1687 666358268 666358305 8.210000e-05 60.2
90 TraesCS2A01G290300 chr3D 97.143 35 1 0 1 35 328267289 328267323 8.210000e-05 60.2
91 TraesCS2A01G290300 chr3D 97.143 35 0 1 1 35 451848009 451847976 2.950000e-04 58.4
92 TraesCS2A01G290300 chr5D 94.737 38 1 1 1 37 357239952 357239989 2.950000e-04 58.4
93 TraesCS2A01G290300 chr5D 100.000 28 0 0 1646 1673 499238728 499238701 1.400000e-02 52.8
94 TraesCS2A01G290300 chrUn 100.000 29 0 0 1 29 66336257 66336285 4.000000e-03 54.7
95 TraesCS2A01G290300 chrUn 100.000 29 0 0 1 29 68313787 68313815 4.000000e-03 54.7
96 TraesCS2A01G290300 chrUn 100.000 29 0 0 1 29 113116845 113116817 4.000000e-03 54.7
97 TraesCS2A01G290300 chrUn 100.000 29 0 0 1 29 295157259 295157231 4.000000e-03 54.7
98 TraesCS2A01G290300 chrUn 100.000 29 0 0 1 29 305125648 305125676 4.000000e-03 54.7
99 TraesCS2A01G290300 chrUn 100.000 29 0 0 1 29 348701932 348701904 4.000000e-03 54.7
100 TraesCS2A01G290300 chrUn 100.000 29 0 0 1 29 413081119 413081091 4.000000e-03 54.7
101 TraesCS2A01G290300 chrUn 100.000 28 0 0 1 28 5193266 5193239 1.400000e-02 52.8
102 TraesCS2A01G290300 chrUn 100.000 28 0 0 1 28 45221028 45221055 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G290300 chr2A 500523575 500531154 7579 False 13998.000000 13998 100.000000 1 7580 1 chr2A.!!$F1 7579
1 TraesCS2A01G290300 chr2A 500525229 500526142 913 False 769.000000 769 97.155000 1655 2568 2 chr2A.!!$F2 913
2 TraesCS2A01G290300 chr2B 439217379 439224519 7140 False 1718.033333 3029 96.279833 766 7469 6 chr2B.!!$F2 6703
3 TraesCS2A01G290300 chr2D 369478656 369480716 2060 False 1566.500000 2990 91.714500 5561 7580 2 chr2D.!!$F4 2019
4 TraesCS2A01G290300 chr2D 369465496 369472935 7439 False 1171.166667 2121 93.044167 29 5558 6 chr2D.!!$F3 5529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 543 0.179171 CACGTACGTGGCGAATCTCT 60.179 55.000 35.09 0.34 42.00 3.10 F
1359 1372 0.450583 TCGATGTGGTAGCAGACGTC 59.549 55.000 7.70 7.70 0.00 4.34 F
1573 1588 0.539051 GTGAGCCTCAGCAGGTACAT 59.461 55.000 0.00 0.00 42.74 2.29 F
3301 5554 0.734253 CTCCAAGACGACGCCTCAAG 60.734 60.000 0.00 0.00 0.00 3.02 F
3461 5717 0.091344 GTCGACGTCATTTGTGCGAG 59.909 55.000 17.16 0.00 0.00 5.03 F
4227 7992 0.249868 ATGGACGGCACATACGGATG 60.250 55.000 5.94 5.94 39.16 3.51 F
4229 7994 0.386476 GGACGGCACATACGGATGTA 59.614 55.000 14.23 0.00 44.82 2.29 F
4230 7995 1.000506 GGACGGCACATACGGATGTAT 59.999 52.381 14.23 0.00 44.82 2.29 F
4692 8458 1.270550 GTTCTCTAACCCCGAACGTCA 59.729 52.381 0.00 0.00 0.00 4.35 F
5148 8927 1.468520 CGCCTTGTATGAACCTTGGTG 59.531 52.381 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1553 2.608752 GCTCACAACCTCAATGCCTTTG 60.609 50.000 0.00 0.00 36.61 2.77 R
3014 4371 1.665599 CGGTAAGGCCAACGACGTT 60.666 57.895 7.57 7.57 36.97 3.99 R
3390 5646 1.071471 CGTGAAGCCTCCACACCTT 59.929 57.895 0.00 0.00 34.36 3.50 R
4208 7973 0.249868 CATCCGTATGTGCCGTCCAT 60.250 55.000 0.00 0.00 0.00 3.41 R
5069 8848 0.613260 TCGCAATTAGCCAGGTGAGT 59.387 50.000 0.00 0.00 41.38 3.41 R
5469 9248 2.871633 CTGCCACACCAACAAAATTTCC 59.128 45.455 0.00 0.00 0.00 3.13 R
5598 9621 4.895297 ACTTATAAGGGACCATTTGGCATG 59.105 41.667 16.73 0.00 39.32 4.06 R
6023 10060 9.438228 AGACAATAAAAGGAAGAGTAAGCTAAC 57.562 33.333 0.00 0.00 0.00 2.34 R
6342 10379 0.882474 GCGGTATCTCGTAGCCATCT 59.118 55.000 0.00 0.00 0.00 2.90 R
6757 10794 3.196254 GGGTCGTTACAAGATCAACCCTA 59.804 47.826 0.00 0.00 41.37 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.892640 TCGCGTTAGCAGCATCCT 59.107 55.556 5.77 0.00 45.49 3.24
18 19 1.519234 TCGCGTTAGCAGCATCCTG 60.519 57.895 5.77 0.00 45.49 3.86
42 43 5.007136 GCAGTAGTGATTCTATTTGGTCTGC 59.993 44.000 0.42 0.00 35.62 4.26
60 61 6.126565 TGGTCTGCTGGATACTAGTCTAACTA 60.127 42.308 0.00 0.00 37.61 2.24
62 63 6.993902 GTCTGCTGGATACTAGTCTAACTACT 59.006 42.308 0.00 0.00 37.61 2.57
72 73 9.723601 ATACTAGTCTAACTACTGGCACTATAC 57.276 37.037 0.00 0.00 31.57 1.47
74 75 8.051535 ACTAGTCTAACTACTGGCACTATACAA 58.948 37.037 0.00 0.00 31.57 2.41
75 76 7.713734 AGTCTAACTACTGGCACTATACAAA 57.286 36.000 0.00 0.00 0.00 2.83
96 97 8.969260 ACAAAATACTATGATCATGCTCTCAA 57.031 30.769 18.72 0.00 0.00 3.02
97 98 9.399797 ACAAAATACTATGATCATGCTCTCAAA 57.600 29.630 18.72 0.00 0.00 2.69
101 102 6.183810 ACTATGATCATGCTCTCAAATGGA 57.816 37.500 18.72 0.00 0.00 3.41
109 110 4.342862 TGCTCTCAAATGGATAGTAGGC 57.657 45.455 0.00 0.00 0.00 3.93
112 113 4.802248 GCTCTCAAATGGATAGTAGGCCAG 60.802 50.000 5.01 0.00 37.64 4.85
117 118 3.925261 ATGGATAGTAGGCCAGTAGGT 57.075 47.619 5.01 0.00 37.64 3.08
120 121 2.317040 GATAGTAGGCCAGTAGGTGCA 58.683 52.381 5.01 0.00 37.19 4.57
125 126 0.326264 AGGCCAGTAGGTGCAGAAAG 59.674 55.000 5.01 0.00 37.19 2.62
143 144 6.402658 GCAGAAAGCACTACCTTGAACTTATC 60.403 42.308 0.00 0.00 44.79 1.75
146 147 5.499004 AGCACTACCTTGAACTTATCCAA 57.501 39.130 0.00 0.00 0.00 3.53
149 150 5.648092 GCACTACCTTGAACTTATCCAATGT 59.352 40.000 0.00 0.00 0.00 2.71
195 196 9.614792 GTTGTTCCTCAGTATTTTCAGGTATAT 57.385 33.333 0.00 0.00 0.00 0.86
211 212 9.595823 TTCAGGTATATTAGTAAAACAGACTGC 57.404 33.333 1.25 0.00 0.00 4.40
213 214 7.169308 CAGGTATATTAGTAAAACAGACTGCCG 59.831 40.741 1.25 0.00 0.00 5.69
217 218 6.716898 ATTAGTAAAACAGACTGCCGTAAC 57.283 37.500 1.25 0.00 0.00 2.50
235 236 4.684242 CGTAACTGTAAGAGCACATTCACA 59.316 41.667 0.00 0.00 37.43 3.58
238 239 3.438087 ACTGTAAGAGCACATTCACATGC 59.562 43.478 0.00 0.00 38.83 4.06
251 252 6.644181 CACATTCACATGCTTATACGAGATCT 59.356 38.462 0.00 0.00 33.05 2.75
254 255 6.581171 TCACATGCTTATACGAGATCTCAT 57.419 37.500 22.31 10.26 0.00 2.90
258 259 7.598118 CACATGCTTATACGAGATCTCATTTCT 59.402 37.037 22.31 4.78 0.00 2.52
259 260 8.797438 ACATGCTTATACGAGATCTCATTTCTA 58.203 33.333 22.31 3.87 0.00 2.10
263 264 9.284594 GCTTATACGAGATCTCATTTCTACATC 57.715 37.037 22.31 0.00 0.00 3.06
269 270 8.420222 ACGAGATCTCATTTCTACATCTTTCAT 58.580 33.333 22.31 0.00 0.00 2.57
282 283 6.959671 ACATCTTTCATCTTCTTCTTCGTC 57.040 37.500 0.00 0.00 0.00 4.20
285 286 2.279582 TCATCTTCTTCTTCGTCGCC 57.720 50.000 0.00 0.00 0.00 5.54
298 299 4.595538 TCGCCGCCTTCACGTGTT 62.596 61.111 16.51 0.00 0.00 3.32
302 303 2.280524 CGCCTTCACGTGTTGGGA 60.281 61.111 23.31 1.22 0.00 4.37
303 304 1.671054 CGCCTTCACGTGTTGGGAT 60.671 57.895 23.31 0.00 0.00 3.85
304 305 1.234615 CGCCTTCACGTGTTGGGATT 61.235 55.000 23.31 0.00 0.00 3.01
324 325 1.039785 TGCGCTCTGTAGATCAGGCT 61.040 55.000 9.73 0.00 43.76 4.58
335 336 1.488393 AGATCAGGCTTTGTAGGAGGC 59.512 52.381 0.00 0.00 39.76 4.70
372 373 4.344865 GGCTTTGGCGGGAGGACA 62.345 66.667 0.00 0.00 39.81 4.02
380 381 0.322546 GGCGGGAGGACAAACATCTT 60.323 55.000 0.00 0.00 0.00 2.40
404 405 2.266055 CTCCTCCCACGTTGGCTC 59.734 66.667 0.00 0.00 35.79 4.70
410 411 2.819595 CCACGTTGGCTCCATCGG 60.820 66.667 19.64 10.79 41.68 4.18
411 412 2.264480 CACGTTGGCTCCATCGGA 59.736 61.111 19.64 0.00 41.68 4.55
454 455 3.178540 AAGGGGCGAGCTTTCACGT 62.179 57.895 0.00 0.00 0.00 4.49
455 456 3.423154 GGGGCGAGCTTTCACGTG 61.423 66.667 9.94 9.94 0.00 4.49
481 482 5.841810 ACAATGACGAAAATGACCAAATGT 58.158 33.333 0.00 0.00 0.00 2.71
482 483 5.691305 ACAATGACGAAAATGACCAAATGTG 59.309 36.000 0.00 0.00 0.00 3.21
490 491 1.675641 GACCAAATGTGCGGGCTCT 60.676 57.895 0.00 0.00 0.00 4.09
491 492 1.926511 GACCAAATGTGCGGGCTCTG 61.927 60.000 0.00 0.00 0.00 3.35
507 508 2.756760 GCTCTGCCTTGATTTTGGATGA 59.243 45.455 0.00 0.00 0.00 2.92
509 510 2.756760 TCTGCCTTGATTTTGGATGAGC 59.243 45.455 0.00 0.00 0.00 4.26
516 517 3.084039 TGATTTTGGATGAGCCTGTGTC 58.916 45.455 0.00 0.00 37.63 3.67
518 519 0.321564 TTTGGATGAGCCTGTGTCGG 60.322 55.000 0.00 0.00 37.63 4.79
519 520 2.184020 TTGGATGAGCCTGTGTCGGG 62.184 60.000 0.00 0.00 37.63 5.14
536 540 2.693285 GCACGTACGTGGCGAATC 59.307 61.111 40.17 23.77 45.49 2.52
539 543 0.179171 CACGTACGTGGCGAATCTCT 60.179 55.000 35.09 0.34 42.00 3.10
543 547 2.529090 CGTACGTGGCGAATCTCTAAAC 59.471 50.000 7.22 0.00 0.00 2.01
549 553 3.131400 GTGGCGAATCTCTAAACTCCTCT 59.869 47.826 0.00 0.00 0.00 3.69
560 564 1.751437 AACTCCTCTAAATTGCCCGC 58.249 50.000 0.00 0.00 0.00 6.13
581 585 3.859252 GCCAGTTTGGTTTCGGTTTATGG 60.859 47.826 0.00 0.00 40.46 2.74
588 592 5.140747 TGGTTTCGGTTTATGGGATTTTG 57.859 39.130 0.00 0.00 0.00 2.44
592 596 2.162608 TCGGTTTATGGGATTTTGCACG 59.837 45.455 0.00 0.00 0.00 5.34
593 597 2.094957 CGGTTTATGGGATTTTGCACGT 60.095 45.455 0.00 0.00 0.00 4.49
594 598 3.507786 GGTTTATGGGATTTTGCACGTC 58.492 45.455 0.00 0.00 0.00 4.34
595 599 3.192633 GGTTTATGGGATTTTGCACGTCT 59.807 43.478 0.00 0.00 0.00 4.18
596 600 4.396790 GGTTTATGGGATTTTGCACGTCTA 59.603 41.667 0.00 0.00 0.00 2.59
597 601 5.448632 GGTTTATGGGATTTTGCACGTCTAG 60.449 44.000 0.00 0.00 0.00 2.43
598 602 3.627395 ATGGGATTTTGCACGTCTAGA 57.373 42.857 0.00 0.00 0.00 2.43
599 603 3.410631 TGGGATTTTGCACGTCTAGAA 57.589 42.857 0.00 0.00 0.00 2.10
600 604 3.950397 TGGGATTTTGCACGTCTAGAAT 58.050 40.909 0.00 0.00 0.00 2.40
601 605 3.689161 TGGGATTTTGCACGTCTAGAATG 59.311 43.478 0.00 0.00 0.00 2.67
612 616 4.677378 CACGTCTAGAATGATCCGAACATC 59.323 45.833 5.32 0.00 0.00 3.06
619 623 6.978674 AGAATGATCCGAACATCTTAGGTA 57.021 37.500 0.00 0.00 0.00 3.08
621 625 7.792032 AGAATGATCCGAACATCTTAGGTAAA 58.208 34.615 0.00 0.00 0.00 2.01
665 669 1.292541 GGGACTGTCCGGTCTGAAC 59.707 63.158 19.98 0.38 37.43 3.18
725 732 1.640428 TTTGATGATCCGACGACTGC 58.360 50.000 0.00 0.00 0.00 4.40
726 733 0.525455 TTGATGATCCGACGACTGCG 60.525 55.000 0.00 0.00 44.79 5.18
844 857 2.776526 TCCAACCCCACAGCCACT 60.777 61.111 0.00 0.00 0.00 4.00
855 868 0.535102 ACAGCCACTGGAACCGAAAG 60.535 55.000 0.00 0.00 35.51 2.62
899 912 4.796231 CCGTTCGCTCACTCCCCG 62.796 72.222 0.00 0.00 0.00 5.73
950 963 2.402572 GCGGGCAAGAGAAGAAGCC 61.403 63.158 0.00 0.00 46.28 4.35
975 988 2.529389 AGAAAGCGTCCCCCACCT 60.529 61.111 0.00 0.00 0.00 4.00
1058 1071 2.901042 GAATCCGTCCCTTCCGCT 59.099 61.111 0.00 0.00 0.00 5.52
1133 1146 2.575993 CTCCTCCGTGGCTCAGTG 59.424 66.667 0.00 0.00 35.26 3.66
1178 1191 1.003696 CTCCCCTTCTCACCTGGTTTC 59.996 57.143 0.00 0.00 0.00 2.78
1271 1284 1.271707 TGACCCGGTTTTCCCTTGATC 60.272 52.381 0.00 0.00 36.42 2.92
1347 1360 2.791560 CTCTTCTACGCCAATCGATGTG 59.208 50.000 0.00 0.00 41.67 3.21
1359 1372 0.450583 TCGATGTGGTAGCAGACGTC 59.549 55.000 7.70 7.70 0.00 4.34
1368 1381 2.731976 GGTAGCAGACGTCAAAACAGAG 59.268 50.000 19.50 0.00 0.00 3.35
1389 1402 5.045286 AGAGAAGGCATGAAATTGAGTACCT 60.045 40.000 0.00 0.00 0.00 3.08
1390 1403 5.574188 AGAAGGCATGAAATTGAGTACCTT 58.426 37.500 0.00 0.00 38.93 3.50
1409 1422 6.479972 ACCTTATGTCTGTTATCATTCGGA 57.520 37.500 0.00 0.00 0.00 4.55
1412 1425 6.986817 CCTTATGTCTGTTATCATTCGGAAGT 59.013 38.462 0.00 0.00 0.00 3.01
1424 1437 1.376424 CGGAAGTGCTGTCAGGCAT 60.376 57.895 1.14 0.00 44.34 4.40
1462 1477 7.829211 TCCAGTAAGATTGGTTTCCTGAAATAG 59.171 37.037 0.00 0.00 37.02 1.73
1573 1588 0.539051 GTGAGCCTCAGCAGGTACAT 59.461 55.000 0.00 0.00 42.74 2.29
1588 1603 5.615289 CAGGTACATCTTTCCCCTTATCTG 58.385 45.833 0.00 0.00 0.00 2.90
1604 1619 9.343539 CCCCTTATCTGTTCTTTTTATTCTAGG 57.656 37.037 0.00 0.00 0.00 3.02
2599 3938 3.349927 CAGACACACCATCATCACCAAT 58.650 45.455 0.00 0.00 0.00 3.16
2985 4342 2.863809 TCACTCTACTGAGACAGCACA 58.136 47.619 0.00 0.00 42.73 4.57
3301 5554 0.734253 CTCCAAGACGACGCCTCAAG 60.734 60.000 0.00 0.00 0.00 3.02
3318 5574 5.102626 CCTCAAGGAATGGAACAATGTCGA 61.103 45.833 0.00 0.00 39.15 4.20
3390 5646 4.231195 TCCTGACAGTACTTAGGGTGGATA 59.769 45.833 14.49 0.00 0.00 2.59
3461 5717 0.091344 GTCGACGTCATTTGTGCGAG 59.909 55.000 17.16 0.00 0.00 5.03
3528 5784 3.542676 ACTGAACCACGCCGTCCA 61.543 61.111 0.00 0.00 0.00 4.02
3601 5862 1.462238 AGCCTCCCTTGGTGTCTGT 60.462 57.895 0.00 0.00 0.00 3.41
3602 5863 1.302832 GCCTCCCTTGGTGTCTGTG 60.303 63.158 0.00 0.00 0.00 3.66
3653 5914 1.279496 TGCCTCCACTGTGCTAGATT 58.721 50.000 1.29 0.00 0.00 2.40
3691 5963 4.774726 AGATCCATGCCGTTAGACTATGAT 59.225 41.667 0.00 0.00 0.00 2.45
3757 6029 1.005215 CAAAGCCATCCTCCTCCAAGT 59.995 52.381 0.00 0.00 0.00 3.16
3783 6055 2.060383 CCCTCATCGCCTCTGGACA 61.060 63.158 0.00 0.00 0.00 4.02
3840 6112 2.406130 CGAAAATGCTGCAAACACCAT 58.594 42.857 6.36 0.00 0.00 3.55
3846 6118 1.653667 CTGCAAACACCATCGCACA 59.346 52.632 0.00 0.00 0.00 4.57
3976 6248 2.647356 CGAGAGCCTCCCACGATAT 58.353 57.895 0.00 0.00 0.00 1.63
4099 7864 6.542370 TGTGTTAGGCAGATAATTAAGGAAGC 59.458 38.462 0.00 0.00 0.00 3.86
4136 7901 2.223665 GCAGTGATTGAAGCATAAGGGC 60.224 50.000 0.00 0.00 0.00 5.19
4165 7930 8.109634 TGAAGCTTTTTAAGATAGTTGGGATCT 58.890 33.333 0.00 0.00 35.08 2.75
4166 7931 9.614792 GAAGCTTTTTAAGATAGTTGGGATCTA 57.385 33.333 0.00 0.00 33.20 1.98
4167 7932 8.966069 AGCTTTTTAAGATAGTTGGGATCTAC 57.034 34.615 0.00 0.00 33.20 2.59
4168 7933 8.773216 AGCTTTTTAAGATAGTTGGGATCTACT 58.227 33.333 0.00 0.00 33.20 2.57
4169 7934 9.047371 GCTTTTTAAGATAGTTGGGATCTACTC 57.953 37.037 0.00 0.00 33.20 2.59
4170 7935 9.549078 CTTTTTAAGATAGTTGGGATCTACTCC 57.451 37.037 0.00 0.00 44.11 3.85
4180 7945 2.668625 GGATCTACTCCCTCCGTTTCT 58.331 52.381 0.00 0.00 38.19 2.52
4181 7946 3.830121 GGATCTACTCCCTCCGTTTCTA 58.170 50.000 0.00 0.00 38.19 2.10
4182 7947 4.213513 GGATCTACTCCCTCCGTTTCTAA 58.786 47.826 0.00 0.00 38.19 2.10
4183 7948 4.648307 GGATCTACTCCCTCCGTTTCTAAA 59.352 45.833 0.00 0.00 38.19 1.85
4184 7949 5.304871 GGATCTACTCCCTCCGTTTCTAAAT 59.695 44.000 0.00 0.00 38.19 1.40
4185 7950 6.492772 GGATCTACTCCCTCCGTTTCTAAATA 59.507 42.308 0.00 0.00 38.19 1.40
4186 7951 7.178805 GGATCTACTCCCTCCGTTTCTAAATAT 59.821 40.741 0.00 0.00 38.19 1.28
4187 7952 7.909485 TCTACTCCCTCCGTTTCTAAATATT 57.091 36.000 0.00 0.00 0.00 1.28
4188 7953 8.315220 TCTACTCCCTCCGTTTCTAAATATTT 57.685 34.615 5.89 5.89 0.00 1.40
4189 7954 8.202137 TCTACTCCCTCCGTTTCTAAATATTTG 58.798 37.037 11.05 1.65 0.00 2.32
4190 7955 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
4191 7956 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
4192 7957 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
4193 7958 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
4194 7959 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
4195 7960 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
4196 7961 9.908152 CCTCCGTTTCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
4213 7978 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
4214 7979 8.289618 TGTCTTTTTAGAGATTTCAAATGGACG 58.710 33.333 0.00 0.00 0.00 4.79
4215 7980 7.750903 GTCTTTTTAGAGATTTCAAATGGACGG 59.249 37.037 0.00 0.00 0.00 4.79
4216 7981 5.560966 TTTAGAGATTTCAAATGGACGGC 57.439 39.130 0.00 0.00 0.00 5.68
4217 7982 3.071874 AGAGATTTCAAATGGACGGCA 57.928 42.857 0.00 0.00 0.00 5.69
4218 7983 2.749621 AGAGATTTCAAATGGACGGCAC 59.250 45.455 0.00 0.00 0.00 5.01
4219 7984 2.487762 GAGATTTCAAATGGACGGCACA 59.512 45.455 0.00 0.00 0.00 4.57
4220 7985 3.091545 AGATTTCAAATGGACGGCACAT 58.908 40.909 0.00 0.00 0.00 3.21
4221 7986 4.269183 AGATTTCAAATGGACGGCACATA 58.731 39.130 0.00 0.00 0.00 2.29
4222 7987 3.840890 TTTCAAATGGACGGCACATAC 57.159 42.857 0.00 0.00 0.00 2.39
4223 7988 1.364721 TCAAATGGACGGCACATACG 58.635 50.000 0.00 0.00 37.36 3.06
4224 7989 0.376852 CAAATGGACGGCACATACGG 59.623 55.000 0.00 0.00 35.23 4.02
4225 7990 0.250793 AAATGGACGGCACATACGGA 59.749 50.000 0.00 0.00 35.23 4.69
4226 7991 0.468226 AATGGACGGCACATACGGAT 59.532 50.000 0.00 0.00 35.23 4.18
4227 7992 0.249868 ATGGACGGCACATACGGATG 60.250 55.000 5.94 5.94 39.16 3.51
4229 7994 0.386476 GGACGGCACATACGGATGTA 59.614 55.000 14.23 0.00 44.82 2.29
4230 7995 1.000506 GGACGGCACATACGGATGTAT 59.999 52.381 14.23 0.00 44.82 2.29
4231 7996 2.229543 GGACGGCACATACGGATGTATA 59.770 50.000 14.23 0.00 44.82 1.47
4232 7997 3.119245 GGACGGCACATACGGATGTATAT 60.119 47.826 14.23 0.00 44.82 0.86
4233 7998 4.096833 GGACGGCACATACGGATGTATATA 59.903 45.833 14.23 0.00 44.82 0.86
4234 7999 5.244785 ACGGCACATACGGATGTATATAG 57.755 43.478 14.23 1.36 44.82 1.31
4235 8000 4.945543 ACGGCACATACGGATGTATATAGA 59.054 41.667 14.23 0.00 44.82 1.98
4236 8001 5.163683 ACGGCACATACGGATGTATATAGAC 60.164 44.000 14.23 1.35 44.82 2.59
4237 8002 5.163693 CGGCACATACGGATGTATATAGACA 60.164 44.000 14.23 2.07 44.82 3.41
4238 8003 6.459710 CGGCACATACGGATGTATATAGACAT 60.460 42.308 14.23 12.70 44.82 3.06
4239 8004 7.255001 CGGCACATACGGATGTATATAGACATA 60.255 40.741 14.23 0.00 44.82 2.29
4240 8005 8.577296 GGCACATACGGATGTATATAGACATAT 58.423 37.037 14.23 5.08 44.82 1.78
4241 8006 9.967346 GCACATACGGATGTATATAGACATATT 57.033 33.333 14.23 3.62 44.82 1.28
4268 8033 7.934855 AGAGTGTAGATTCAATCATTTTGCT 57.065 32.000 0.00 0.00 35.30 3.91
4269 8034 7.983307 AGAGTGTAGATTCAATCATTTTGCTC 58.017 34.615 0.00 0.28 35.30 4.26
4270 8035 7.066766 AGAGTGTAGATTCAATCATTTTGCTCC 59.933 37.037 0.00 0.00 35.30 4.70
4271 8036 5.967674 GTGTAGATTCAATCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
4272 8037 5.647658 TGTAGATTCAATCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
4273 8038 6.821160 TGTAGATTCAATCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
4274 8039 6.949352 AGATTCAATCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
4275 8040 6.732154 AGATTCAATCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
4276 8041 5.895636 TTCAATCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
4277 8042 6.993786 TTCAATCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
4278 8043 6.603237 TCAATCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
4279 8044 6.112734 TCAATCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
4280 8045 6.257849 TCAATCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
4281 8046 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4282 8047 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4283 8048 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4284 8049 3.777465 TTGCTCCGTATGTAGTCACTC 57.223 47.619 0.00 0.00 0.00 3.51
4285 8050 1.669265 TGCTCCGTATGTAGTCACTCG 59.331 52.381 0.00 0.00 0.00 4.18
4286 8051 1.669779 GCTCCGTATGTAGTCACTCGT 59.330 52.381 0.00 0.00 0.00 4.18
4287 8052 2.097142 GCTCCGTATGTAGTCACTCGTT 59.903 50.000 0.00 0.00 0.00 3.85
4288 8053 3.681855 CTCCGTATGTAGTCACTCGTTG 58.318 50.000 0.00 0.00 0.00 4.10
4289 8054 3.337358 TCCGTATGTAGTCACTCGTTGA 58.663 45.455 0.00 0.00 0.00 3.18
4290 8055 3.752747 TCCGTATGTAGTCACTCGTTGAA 59.247 43.478 0.00 0.00 35.39 2.69
4291 8056 4.216042 TCCGTATGTAGTCACTCGTTGAAA 59.784 41.667 0.00 0.00 35.39 2.69
4292 8057 5.100259 CCGTATGTAGTCACTCGTTGAAAT 58.900 41.667 0.00 0.00 35.39 2.17
4293 8058 5.229469 CCGTATGTAGTCACTCGTTGAAATC 59.771 44.000 0.00 0.00 35.39 2.17
4294 8059 6.028368 CGTATGTAGTCACTCGTTGAAATCT 58.972 40.000 0.00 0.00 35.39 2.40
4295 8060 6.194876 CGTATGTAGTCACTCGTTGAAATCTC 59.805 42.308 0.00 0.00 35.39 2.75
4296 8061 5.707242 TGTAGTCACTCGTTGAAATCTCT 57.293 39.130 0.00 0.00 35.39 3.10
4297 8062 6.812879 TGTAGTCACTCGTTGAAATCTCTA 57.187 37.500 0.00 0.00 35.39 2.43
4298 8063 6.843208 TGTAGTCACTCGTTGAAATCTCTAG 58.157 40.000 0.00 0.00 35.39 2.43
4299 8064 6.653740 TGTAGTCACTCGTTGAAATCTCTAGA 59.346 38.462 0.00 0.00 35.39 2.43
4300 8065 6.576662 AGTCACTCGTTGAAATCTCTAGAA 57.423 37.500 0.00 0.00 35.39 2.10
4301 8066 6.982852 AGTCACTCGTTGAAATCTCTAGAAA 58.017 36.000 0.00 0.00 35.39 2.52
4302 8067 7.087639 AGTCACTCGTTGAAATCTCTAGAAAG 58.912 38.462 0.00 0.00 35.39 2.62
4303 8068 7.040340 AGTCACTCGTTGAAATCTCTAGAAAGA 60.040 37.037 0.00 0.00 35.39 2.52
4304 8069 7.061326 GTCACTCGTTGAAATCTCTAGAAAGAC 59.939 40.741 0.00 0.00 35.39 3.01
4305 8070 6.863645 CACTCGTTGAAATCTCTAGAAAGACA 59.136 38.462 0.00 0.00 0.00 3.41
4306 8071 7.382488 CACTCGTTGAAATCTCTAGAAAGACAA 59.618 37.037 0.00 0.00 0.00 3.18
4307 8072 7.926555 ACTCGTTGAAATCTCTAGAAAGACAAA 59.073 33.333 0.00 0.00 0.00 2.83
4308 8073 8.833231 TCGTTGAAATCTCTAGAAAGACAAAT 57.167 30.769 0.00 0.00 0.00 2.32
4309 8074 9.923143 TCGTTGAAATCTCTAGAAAGACAAATA 57.077 29.630 0.00 0.00 0.00 1.40
4320 8085 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4321 8086 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4322 8087 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4323 8088 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4324 8089 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4325 8090 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4326 8091 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4394 8159 2.158842 AGCCTAATCTGCATCCTGTCAC 60.159 50.000 0.00 0.00 0.00 3.67
4571 8336 1.891933 TGGGTGAATGGATAGCAGGA 58.108 50.000 0.00 0.00 0.00 3.86
4671 8437 8.368668 GTGTGAACTGCTCCCTATATTAGTTAT 58.631 37.037 0.00 0.00 0.00 1.89
4692 8458 1.270550 GTTCTCTAACCCCGAACGTCA 59.729 52.381 0.00 0.00 0.00 4.35
4795 8564 6.241207 ACACACCTGAGAATTCAAATTACG 57.759 37.500 8.44 0.00 31.69 3.18
5148 8927 1.468520 CGCCTTGTATGAACCTTGGTG 59.531 52.381 0.00 0.00 0.00 4.17
5177 8956 5.778241 CCCTTTACCACTTTTTCCCTGTAAT 59.222 40.000 0.00 0.00 0.00 1.89
5401 9180 3.662247 AATACCATAGCAGTAGACGCC 57.338 47.619 0.00 0.00 0.00 5.68
5427 9206 6.725246 CGAAAGAATTTGGTGAGTACTTTGT 58.275 36.000 0.00 0.00 39.27 2.83
5469 9248 9.680946 CGATAAGATTATCTGTATGCATTTTCG 57.319 33.333 3.54 0.00 37.88 3.46
5502 9281 3.181449 TGGTGTGGCAGTAGTTAATGTGT 60.181 43.478 0.00 0.00 0.00 3.72
5558 9337 8.057246 AGATAATAGTTTGATACAATGGGGGT 57.943 34.615 0.00 0.00 0.00 4.95
5559 9338 8.511126 AGATAATAGTTTGATACAATGGGGGTT 58.489 33.333 0.00 0.00 0.00 4.11
5598 9621 8.153550 ACCAATAGGATCTTGACTTATGACATC 58.846 37.037 0.00 0.00 38.69 3.06
5868 9896 8.366359 AGAAAACTTTATCATTAAGGGTGCAT 57.634 30.769 0.00 0.00 0.00 3.96
5933 9961 4.462834 GCTTGCTATCCTGGTTAAACCTTT 59.537 41.667 0.00 0.00 39.58 3.11
6023 10060 6.683974 AAGTTATATTGTGTTGCCTAGCAG 57.316 37.500 0.00 0.00 40.61 4.24
6232 10269 5.368989 CAAATACCCATCCTCAGGTTAGAC 58.631 45.833 0.00 0.00 37.59 2.59
6342 10379 9.008965 GGGTTTATTTACGGTAAAAGGAAAGTA 57.991 33.333 16.49 1.36 0.00 2.24
6555 10592 3.686241 TCACAATCGAGCAAATCAAGGAG 59.314 43.478 0.00 0.00 0.00 3.69
6587 10624 3.020274 GTGCCAGAGTGTAGAGATCTCA 58.980 50.000 24.39 8.03 0.00 3.27
6754 10791 3.423539 TCATAGCAGGCAACACTCTTT 57.576 42.857 0.00 0.00 41.41 2.52
6757 10794 2.938956 AGCAGGCAACACTCTTTACT 57.061 45.000 0.00 0.00 41.41 2.24
6776 10813 6.839124 TTACTAGGGTTGATCTTGTAACGA 57.161 37.500 0.00 0.00 31.31 3.85
6979 11021 4.112341 GACCCGACGGTGGACGAG 62.112 72.222 13.94 0.00 44.88 4.18
6997 11039 4.309950 GGTGAGACGCCGGTTGGT 62.310 66.667 1.90 0.00 37.67 3.67
7072 11114 4.783621 GGTCTGCATGCGCCTGGA 62.784 66.667 14.09 10.81 37.32 3.86
7183 11226 3.949031 GTCCATGGACGCTCTCTAC 57.051 57.895 28.52 3.79 35.30 2.59
7195 11238 2.028839 CGCTCTCTACCTCTCTCCGATA 60.029 54.545 0.00 0.00 0.00 2.92
7244 11287 1.100510 CATGGCTGGATCACCAACAG 58.899 55.000 5.56 0.00 46.32 3.16
7509 11593 5.220381 TCTTTCACTCTCGTGTATTGTGAC 58.780 41.667 0.00 0.00 41.89 3.67
7516 11600 3.690628 TCTCGTGTATTGTGACGATACCA 59.309 43.478 17.87 5.94 43.26 3.25
7539 11623 7.137426 CCAATTCTTGTCTCTTCTTGTGAAAG 58.863 38.462 0.00 0.00 0.00 2.62
7540 11624 5.741388 TTCTTGTCTCTTCTTGTGAAAGC 57.259 39.130 0.00 0.00 0.00 3.51
7541 11625 4.769688 TCTTGTCTCTTCTTGTGAAAGCA 58.230 39.130 0.00 0.00 0.00 3.91
7542 11626 5.185454 TCTTGTCTCTTCTTGTGAAAGCAA 58.815 37.500 0.00 0.00 0.00 3.91
7543 11627 5.824624 TCTTGTCTCTTCTTGTGAAAGCAAT 59.175 36.000 0.00 0.00 0.00 3.56
7544 11628 6.992123 TCTTGTCTCTTCTTGTGAAAGCAATA 59.008 34.615 0.00 0.00 0.00 1.90
7545 11629 7.498900 TCTTGTCTCTTCTTGTGAAAGCAATAA 59.501 33.333 0.00 0.00 0.00 1.40
7546 11630 7.750229 TGTCTCTTCTTGTGAAAGCAATAAT 57.250 32.000 0.00 0.00 0.00 1.28
7547 11631 7.810658 TGTCTCTTCTTGTGAAAGCAATAATC 58.189 34.615 0.00 0.00 0.00 1.75
7548 11632 6.958193 GTCTCTTCTTGTGAAAGCAATAATCG 59.042 38.462 0.00 0.00 0.00 3.34
7549 11633 6.092670 TCTCTTCTTGTGAAAGCAATAATCGG 59.907 38.462 0.00 0.00 0.00 4.18
7550 11634 4.963276 TCTTGTGAAAGCAATAATCGGG 57.037 40.909 0.00 0.00 0.00 5.14
7551 11635 3.694072 TCTTGTGAAAGCAATAATCGGGG 59.306 43.478 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.519234 CAGGATGCTGCTAACGCGA 60.519 57.895 15.93 0.00 39.65 5.87
1 2 3.009140 CAGGATGCTGCTAACGCG 58.991 61.111 3.53 3.53 39.65 6.01
12 13 6.204301 CCAAATAGAATCACTACTGCAGGATG 59.796 42.308 19.93 12.87 34.43 3.51
13 14 6.126652 ACCAAATAGAATCACTACTGCAGGAT 60.127 38.462 19.93 8.04 33.62 3.24
14 15 5.189736 ACCAAATAGAATCACTACTGCAGGA 59.810 40.000 19.93 9.06 33.62 3.86
15 16 5.431765 ACCAAATAGAATCACTACTGCAGG 58.568 41.667 19.93 3.21 33.62 4.85
16 17 6.257411 CAGACCAAATAGAATCACTACTGCAG 59.743 42.308 13.48 13.48 33.62 4.41
17 18 6.108687 CAGACCAAATAGAATCACTACTGCA 58.891 40.000 0.00 0.00 33.62 4.41
18 19 5.007136 GCAGACCAAATAGAATCACTACTGC 59.993 44.000 0.00 0.00 36.94 4.40
19 20 6.257411 CAGCAGACCAAATAGAATCACTACTG 59.743 42.308 0.00 0.00 33.62 2.74
20 21 6.344500 CAGCAGACCAAATAGAATCACTACT 58.656 40.000 0.00 0.00 33.62 2.57
21 22 5.525378 CCAGCAGACCAAATAGAATCACTAC 59.475 44.000 0.00 0.00 33.62 2.73
22 23 5.425217 TCCAGCAGACCAAATAGAATCACTA 59.575 40.000 0.00 0.00 35.42 2.74
23 24 4.225942 TCCAGCAGACCAAATAGAATCACT 59.774 41.667 0.00 0.00 0.00 3.41
24 25 4.517285 TCCAGCAGACCAAATAGAATCAC 58.483 43.478 0.00 0.00 0.00 3.06
25 26 4.842531 TCCAGCAGACCAAATAGAATCA 57.157 40.909 0.00 0.00 0.00 2.57
26 27 6.529220 AGTATCCAGCAGACCAAATAGAATC 58.471 40.000 0.00 0.00 0.00 2.52
27 28 6.506538 AGTATCCAGCAGACCAAATAGAAT 57.493 37.500 0.00 0.00 0.00 2.40
42 43 6.016943 GTGCCAGTAGTTAGACTAGTATCCAG 60.017 46.154 0.00 0.00 32.84 3.86
60 61 9.712305 GATCATAGTATTTTGTATAGTGCCAGT 57.288 33.333 0.00 0.00 0.00 4.00
74 75 9.011095 CCATTTGAGAGCATGATCATAGTATTT 57.989 33.333 14.38 0.00 0.00 1.40
75 76 8.380867 TCCATTTGAGAGCATGATCATAGTATT 58.619 33.333 14.38 0.00 0.00 1.89
89 90 3.071602 TGGCCTACTATCCATTTGAGAGC 59.928 47.826 3.32 0.00 35.66 4.09
95 96 4.348168 CACCTACTGGCCTACTATCCATTT 59.652 45.833 3.32 0.00 36.63 2.32
96 97 3.904339 CACCTACTGGCCTACTATCCATT 59.096 47.826 3.32 0.00 36.63 3.16
97 98 3.511477 CACCTACTGGCCTACTATCCAT 58.489 50.000 3.32 0.00 36.63 3.41
101 102 2.091278 TCTGCACCTACTGGCCTACTAT 60.091 50.000 3.32 0.00 36.63 2.12
120 121 6.174049 GGATAAGTTCAAGGTAGTGCTTTCT 58.826 40.000 0.00 0.00 0.00 2.52
125 126 5.648092 ACATTGGATAAGTTCAAGGTAGTGC 59.352 40.000 0.00 0.00 36.35 4.40
164 165 8.960591 CCTGAAAATACTGAGGAACAACATAAT 58.039 33.333 0.00 0.00 0.00 1.28
195 196 5.693104 CAGTTACGGCAGTCTGTTTTACTAA 59.307 40.000 0.93 0.00 33.08 2.24
199 200 4.062677 ACAGTTACGGCAGTCTGTTTTA 57.937 40.909 5.67 0.00 37.81 1.52
201 202 2.614829 ACAGTTACGGCAGTCTGTTT 57.385 45.000 5.67 0.00 37.81 2.83
204 205 3.502920 CTCTTACAGTTACGGCAGTCTG 58.497 50.000 0.00 0.00 0.00 3.51
210 211 2.074547 TGTGCTCTTACAGTTACGGC 57.925 50.000 0.00 0.00 0.00 5.68
211 212 4.091509 GTGAATGTGCTCTTACAGTTACGG 59.908 45.833 0.00 0.00 33.44 4.02
213 214 6.537566 CATGTGAATGTGCTCTTACAGTTAC 58.462 40.000 0.00 0.00 36.22 2.50
217 218 3.688185 AGCATGTGAATGTGCTCTTACAG 59.312 43.478 0.00 0.00 33.44 2.74
235 236 8.797438 TGTAGAAATGAGATCTCGTATAAGCAT 58.203 33.333 17.79 0.73 0.00 3.79
244 245 8.815141 ATGAAAGATGTAGAAATGAGATCTCG 57.185 34.615 17.76 0.00 0.00 4.04
254 255 9.144747 CGAAGAAGAAGATGAAAGATGTAGAAA 57.855 33.333 0.00 0.00 0.00 2.52
258 259 6.747739 CGACGAAGAAGAAGATGAAAGATGTA 59.252 38.462 0.00 0.00 0.00 2.29
259 260 5.574830 CGACGAAGAAGAAGATGAAAGATGT 59.425 40.000 0.00 0.00 0.00 3.06
263 264 3.061429 GGCGACGAAGAAGAAGATGAAAG 59.939 47.826 0.00 0.00 0.00 2.62
282 283 4.368808 CAACACGTGAAGGCGGCG 62.369 66.667 25.01 0.51 35.98 6.46
285 286 1.234615 AATCCCAACACGTGAAGGCG 61.235 55.000 25.01 15.65 37.94 5.52
295 296 0.537143 ACAGAGCGCAAATCCCAACA 60.537 50.000 11.47 0.00 0.00 3.33
298 299 0.901827 TCTACAGAGCGCAAATCCCA 59.098 50.000 11.47 0.00 0.00 4.37
324 325 0.623723 GGATGGTGGCCTCCTACAAA 59.376 55.000 23.90 4.31 0.00 2.83
335 336 2.365635 AGGACCCGAGGATGGTGG 60.366 66.667 0.00 0.00 35.85 4.61
372 373 5.185828 GTGGGAGGAGCAAATAAAGATGTTT 59.814 40.000 0.00 0.00 0.00 2.83
380 381 2.432444 CAACGTGGGAGGAGCAAATAA 58.568 47.619 0.00 0.00 0.00 1.40
410 411 0.391130 TGTTATGTCACCTGCCGCTC 60.391 55.000 0.00 0.00 0.00 5.03
411 412 0.036164 TTGTTATGTCACCTGCCGCT 59.964 50.000 0.00 0.00 0.00 5.52
454 455 5.506686 TGGTCATTTTCGTCATTGTTTCA 57.493 34.783 0.00 0.00 0.00 2.69
455 456 6.820470 TTTGGTCATTTTCGTCATTGTTTC 57.180 33.333 0.00 0.00 0.00 2.78
490 491 1.826720 GGCTCATCCAAAATCAAGGCA 59.173 47.619 0.00 0.00 34.01 4.75
491 492 2.105766 AGGCTCATCCAAAATCAAGGC 58.894 47.619 0.00 0.00 37.29 4.35
493 494 3.508793 ACACAGGCTCATCCAAAATCAAG 59.491 43.478 0.00 0.00 37.29 3.02
495 496 3.084039 GACACAGGCTCATCCAAAATCA 58.916 45.455 0.00 0.00 37.29 2.57
518 519 2.795389 GATTCGCCACGTACGTGCC 61.795 63.158 36.76 28.33 44.16 5.01
519 520 1.740043 GAGATTCGCCACGTACGTGC 61.740 60.000 36.76 29.55 44.16 5.34
520 521 0.179171 AGAGATTCGCCACGTACGTG 60.179 55.000 35.57 35.57 45.02 4.49
521 522 1.372582 TAGAGATTCGCCACGTACGT 58.627 50.000 16.72 16.72 0.00 3.57
522 523 2.463553 TTAGAGATTCGCCACGTACG 57.536 50.000 15.01 15.01 0.00 3.67
526 530 2.159226 AGGAGTTTAGAGATTCGCCACG 60.159 50.000 0.00 0.00 0.00 4.94
533 537 7.057264 GGGCAATTTAGAGGAGTTTAGAGATT 58.943 38.462 0.00 0.00 0.00 2.40
536 540 4.811557 CGGGCAATTTAGAGGAGTTTAGAG 59.188 45.833 0.00 0.00 0.00 2.43
539 543 3.275999 GCGGGCAATTTAGAGGAGTTTA 58.724 45.455 0.00 0.00 0.00 2.01
543 547 0.107214 TGGCGGGCAATTTAGAGGAG 60.107 55.000 0.01 0.00 0.00 3.69
549 553 0.605589 CCAAACTGGCGGGCAATTTA 59.394 50.000 10.65 0.00 0.00 1.40
560 564 3.305744 CCCATAAACCGAAACCAAACTGG 60.306 47.826 0.00 0.00 45.02 4.00
581 585 5.277538 GGATCATTCTAGACGTGCAAAATCC 60.278 44.000 0.00 0.20 0.00 3.01
588 592 2.776312 TCGGATCATTCTAGACGTGC 57.224 50.000 0.00 0.00 0.00 5.34
592 596 7.087639 CCTAAGATGTTCGGATCATTCTAGAC 58.912 42.308 14.10 0.00 0.00 2.59
593 597 6.778069 ACCTAAGATGTTCGGATCATTCTAGA 59.222 38.462 0.00 0.00 0.00 2.43
594 598 6.987386 ACCTAAGATGTTCGGATCATTCTAG 58.013 40.000 0.00 7.02 0.00 2.43
595 599 6.978674 ACCTAAGATGTTCGGATCATTCTA 57.021 37.500 0.00 0.00 0.00 2.10
596 600 5.878406 ACCTAAGATGTTCGGATCATTCT 57.122 39.130 0.00 0.72 0.00 2.40
597 601 7.494625 TGTTTACCTAAGATGTTCGGATCATTC 59.505 37.037 0.00 0.00 0.00 2.67
598 602 7.280205 GTGTTTACCTAAGATGTTCGGATCATT 59.720 37.037 0.00 0.00 0.00 2.57
599 603 6.761714 GTGTTTACCTAAGATGTTCGGATCAT 59.238 38.462 0.00 1.28 0.00 2.45
600 604 6.103997 GTGTTTACCTAAGATGTTCGGATCA 58.896 40.000 0.00 0.00 0.00 2.92
601 605 5.522824 GGTGTTTACCTAAGATGTTCGGATC 59.477 44.000 0.00 0.00 43.97 3.36
619 623 1.161843 CGGCCGTCTAAATGGTGTTT 58.838 50.000 19.50 0.00 33.68 2.83
621 625 0.322322 TTCGGCCGTCTAAATGGTGT 59.678 50.000 27.15 0.00 33.68 4.16
726 733 4.651008 TCGACGTGAACACCGGCC 62.651 66.667 0.00 0.00 0.00 6.13
758 765 2.874780 CGTGGCGTGAGTAGCGTC 60.875 66.667 0.00 0.00 35.00 5.19
799 806 0.515564 GCTTCGCTCCGCTTGTTTTA 59.484 50.000 0.00 0.00 0.00 1.52
844 857 1.005394 GCGTCTCCTTTCGGTTCCA 60.005 57.895 0.00 0.00 0.00 3.53
907 920 2.203437 AAGGGTGGCAACGGGAAC 60.203 61.111 0.00 0.00 42.51 3.62
950 963 1.351153 GGGACGCTTTCTCTCTTTCG 58.649 55.000 0.00 0.00 0.00 3.46
1133 1146 0.747852 CGGGGAGAGAAACCTAGAGC 59.252 60.000 0.00 0.00 0.00 4.09
1347 1360 2.731976 CTCTGTTTTGACGTCTGCTACC 59.268 50.000 17.92 0.63 0.00 3.18
1359 1372 6.218019 TCAATTTCATGCCTTCTCTGTTTTG 58.782 36.000 0.00 0.00 0.00 2.44
1368 1381 5.904362 AAGGTACTCAATTTCATGCCTTC 57.096 39.130 0.00 0.00 38.49 3.46
1389 1402 6.257849 GCACTTCCGAATGATAACAGACATAA 59.742 38.462 0.00 0.00 0.00 1.90
1390 1403 5.753438 GCACTTCCGAATGATAACAGACATA 59.247 40.000 0.00 0.00 0.00 2.29
1424 1437 6.459066 CAATCTTACTGGAGAAACAGAGTCA 58.541 40.000 0.00 0.00 40.97 3.41
1462 1477 3.656559 ACAATCTGCAAGCATTTGGAAC 58.343 40.909 16.92 0.00 34.03 3.62
1538 1553 2.608752 GCTCACAACCTCAATGCCTTTG 60.609 50.000 0.00 0.00 36.61 2.77
1573 1588 9.822727 AATAAAAAGAACAGATAAGGGGAAAGA 57.177 29.630 0.00 0.00 0.00 2.52
1604 1619 5.171476 ACTGTCTGCATATGTACTGTGTTC 58.829 41.667 4.29 0.00 0.00 3.18
2613 3952 4.211920 GCAGGAAGTGGTATCTCTACTCT 58.788 47.826 0.00 0.00 36.87 3.24
2835 4188 3.443045 CTGCCATTGCACCCCGTC 61.443 66.667 0.00 0.00 44.23 4.79
3014 4371 1.665599 CGGTAAGGCCAACGACGTT 60.666 57.895 7.57 7.57 36.97 3.99
3301 5554 4.669197 CGTCTTTCGACATTGTTCCATTCC 60.669 45.833 0.00 0.00 42.86 3.01
3390 5646 1.071471 CGTGAAGCCTCCACACCTT 59.929 57.895 0.00 0.00 34.36 3.50
3461 5717 4.362476 CCCTGTGCCGGCTTTTGC 62.362 66.667 29.70 12.78 46.64 3.68
3538 5794 2.165167 CCAGTGATGATTGGCACTTGT 58.835 47.619 0.00 0.00 42.33 3.16
3602 5863 1.589716 GAGATGGGCTTGGTGTGCAC 61.590 60.000 10.75 10.75 0.00 4.57
3653 5914 0.254178 GATCTGAAAGGCAGCTCCCA 59.746 55.000 0.00 0.00 44.52 4.37
3691 5963 3.311110 GCCTCTGGTCGGTGGTCA 61.311 66.667 0.66 0.00 0.00 4.02
3757 6029 3.785859 GCGATGAGGGGCAGGTGA 61.786 66.667 0.00 0.00 0.00 4.02
3783 6055 1.337823 CGGTGTTCGGTCCTCAAATCT 60.338 52.381 0.00 0.00 34.75 2.40
3840 6112 2.488545 GGAGTTCTCTCTAGTTGTGCGA 59.511 50.000 0.00 0.00 40.29 5.10
3846 6118 4.027437 GGTGATGGGAGTTCTCTCTAGTT 58.973 47.826 1.33 0.00 40.29 2.24
3976 6248 4.316823 AGGCTCCACCGACTCCCA 62.317 66.667 0.00 0.00 46.52 4.37
4074 7839 6.542370 GCTTCCTTAATTATCTGCCTAACACA 59.458 38.462 0.00 0.00 0.00 3.72
4075 7840 6.542370 TGCTTCCTTAATTATCTGCCTAACAC 59.458 38.462 0.00 0.00 0.00 3.32
4099 7864 4.329392 TCACTGCAATCAGCCCATATATG 58.671 43.478 5.68 5.68 44.10 1.78
4136 7901 8.522830 TCCCAACTATCTTAAAAAGCTTCAATG 58.477 33.333 0.00 0.00 0.00 2.82
4165 7930 7.854337 ACAAATATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
4166 7931 6.718294 ACAAATATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
4167 7932 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
4168 7933 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
4169 7934 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
4170 7935 9.908152 AAAAAGACAAATATTTAGAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
4187 7952 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
4188 7953 8.289618 CGTCCATTTGAAATCTCTAAAAAGACA 58.710 33.333 0.00 0.00 0.00 3.41
4189 7954 7.750903 CCGTCCATTTGAAATCTCTAAAAAGAC 59.249 37.037 0.00 0.00 0.00 3.01
4190 7955 7.574967 GCCGTCCATTTGAAATCTCTAAAAAGA 60.575 37.037 0.00 0.00 0.00 2.52
4191 7956 6.528072 GCCGTCCATTTGAAATCTCTAAAAAG 59.472 38.462 0.00 0.00 0.00 2.27
4192 7957 6.015856 TGCCGTCCATTTGAAATCTCTAAAAA 60.016 34.615 0.00 0.00 0.00 1.94
4193 7958 5.475220 TGCCGTCCATTTGAAATCTCTAAAA 59.525 36.000 0.00 0.00 0.00 1.52
4194 7959 5.007034 TGCCGTCCATTTGAAATCTCTAAA 58.993 37.500 0.00 0.00 0.00 1.85
4195 7960 4.394920 GTGCCGTCCATTTGAAATCTCTAA 59.605 41.667 0.00 0.00 0.00 2.10
4196 7961 3.938963 GTGCCGTCCATTTGAAATCTCTA 59.061 43.478 0.00 0.00 0.00 2.43
4197 7962 2.749621 GTGCCGTCCATTTGAAATCTCT 59.250 45.455 0.00 0.00 0.00 3.10
4198 7963 2.487762 TGTGCCGTCCATTTGAAATCTC 59.512 45.455 0.00 0.00 0.00 2.75
4199 7964 2.513753 TGTGCCGTCCATTTGAAATCT 58.486 42.857 0.00 0.00 0.00 2.40
4200 7965 3.508744 ATGTGCCGTCCATTTGAAATC 57.491 42.857 0.00 0.00 0.00 2.17
4201 7966 3.181501 CGTATGTGCCGTCCATTTGAAAT 60.182 43.478 0.00 0.00 0.00 2.17
4202 7967 2.160615 CGTATGTGCCGTCCATTTGAAA 59.839 45.455 0.00 0.00 0.00 2.69
4203 7968 1.735018 CGTATGTGCCGTCCATTTGAA 59.265 47.619 0.00 0.00 0.00 2.69
4204 7969 1.364721 CGTATGTGCCGTCCATTTGA 58.635 50.000 0.00 0.00 0.00 2.69
4205 7970 0.376852 CCGTATGTGCCGTCCATTTG 59.623 55.000 0.00 0.00 0.00 2.32
4206 7971 0.250793 TCCGTATGTGCCGTCCATTT 59.749 50.000 0.00 0.00 0.00 2.32
4207 7972 0.468226 ATCCGTATGTGCCGTCCATT 59.532 50.000 0.00 0.00 0.00 3.16
4208 7973 0.249868 CATCCGTATGTGCCGTCCAT 60.250 55.000 0.00 0.00 0.00 3.41
4209 7974 1.142965 CATCCGTATGTGCCGTCCA 59.857 57.895 0.00 0.00 0.00 4.02
4210 7975 0.386476 TACATCCGTATGTGCCGTCC 59.614 55.000 3.56 0.00 45.99 4.79
4211 7976 2.433868 ATACATCCGTATGTGCCGTC 57.566 50.000 3.56 0.00 45.99 4.79
4212 7977 4.945543 TCTATATACATCCGTATGTGCCGT 59.054 41.667 3.56 0.00 45.99 5.68
4213 7978 5.163693 TGTCTATATACATCCGTATGTGCCG 60.164 44.000 3.56 0.00 45.99 5.69
4214 7979 6.203808 TGTCTATATACATCCGTATGTGCC 57.796 41.667 3.56 0.00 45.99 5.01
4215 7980 9.967346 AATATGTCTATATACATCCGTATGTGC 57.033 33.333 3.56 0.00 45.99 4.57
4242 8007 9.453572 AGCAAAATGATTGAATCTACACTCTAA 57.546 29.630 6.73 0.00 0.00 2.10
4243 8008 9.102757 GAGCAAAATGATTGAATCTACACTCTA 57.897 33.333 6.73 0.00 0.00 2.43
4244 8009 7.066766 GGAGCAAAATGATTGAATCTACACTCT 59.933 37.037 6.73 0.00 0.00 3.24
4245 8010 7.192232 GGAGCAAAATGATTGAATCTACACTC 58.808 38.462 6.73 6.00 0.00 3.51
4246 8011 6.183360 CGGAGCAAAATGATTGAATCTACACT 60.183 38.462 6.73 0.00 0.00 3.55
4247 8012 5.967674 CGGAGCAAAATGATTGAATCTACAC 59.032 40.000 6.73 0.00 0.00 2.90
4248 8013 5.647658 ACGGAGCAAAATGATTGAATCTACA 59.352 36.000 6.73 0.00 0.00 2.74
4249 8014 6.124088 ACGGAGCAAAATGATTGAATCTAC 57.876 37.500 6.73 0.00 0.00 2.59
4250 8015 7.498900 ACATACGGAGCAAAATGATTGAATCTA 59.501 33.333 6.73 0.00 0.00 1.98
4251 8016 6.319658 ACATACGGAGCAAAATGATTGAATCT 59.680 34.615 6.73 0.00 0.00 2.40
4252 8017 6.498304 ACATACGGAGCAAAATGATTGAATC 58.502 36.000 0.00 0.00 0.00 2.52
4253 8018 6.455360 ACATACGGAGCAAAATGATTGAAT 57.545 33.333 0.00 0.00 0.00 2.57
4254 8019 5.895636 ACATACGGAGCAAAATGATTGAA 57.104 34.783 0.00 0.00 0.00 2.69
4255 8020 6.112734 ACTACATACGGAGCAAAATGATTGA 58.887 36.000 0.00 0.00 0.00 2.57
4256 8021 6.037062 TGACTACATACGGAGCAAAATGATTG 59.963 38.462 0.00 0.00 0.00 2.67
4257 8022 6.037172 GTGACTACATACGGAGCAAAATGATT 59.963 38.462 0.00 0.00 0.00 2.57
4258 8023 5.523916 GTGACTACATACGGAGCAAAATGAT 59.476 40.000 0.00 0.00 0.00 2.45
4259 8024 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4260 8025 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4261 8026 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4262 8027 4.491676 GAGTGACTACATACGGAGCAAAA 58.508 43.478 0.00 0.00 0.00 2.44
4263 8028 3.427098 CGAGTGACTACATACGGAGCAAA 60.427 47.826 0.00 0.00 0.00 3.68
4264 8029 2.096980 CGAGTGACTACATACGGAGCAA 59.903 50.000 0.00 0.00 0.00 3.91
4265 8030 1.669265 CGAGTGACTACATACGGAGCA 59.331 52.381 0.00 0.00 0.00 4.26
4266 8031 1.669779 ACGAGTGACTACATACGGAGC 59.330 52.381 0.00 0.00 34.15 4.70
4267 8032 3.373130 TCAACGAGTGACTACATACGGAG 59.627 47.826 0.00 0.00 34.15 4.63
4268 8033 3.337358 TCAACGAGTGACTACATACGGA 58.663 45.455 0.00 0.00 34.15 4.69
4269 8034 3.752412 TCAACGAGTGACTACATACGG 57.248 47.619 0.00 0.00 34.15 4.02
4270 8035 6.028368 AGATTTCAACGAGTGACTACATACG 58.972 40.000 0.00 0.00 35.39 3.06
4271 8036 7.251994 AGAGATTTCAACGAGTGACTACATAC 58.748 38.462 0.00 0.00 35.39 2.39
4272 8037 7.392494 AGAGATTTCAACGAGTGACTACATA 57.608 36.000 0.00 0.00 35.39 2.29
4273 8038 6.274157 AGAGATTTCAACGAGTGACTACAT 57.726 37.500 0.00 0.00 35.39 2.29
4274 8039 5.707242 AGAGATTTCAACGAGTGACTACA 57.293 39.130 0.00 0.00 35.39 2.74
4275 8040 7.074507 TCTAGAGATTTCAACGAGTGACTAC 57.925 40.000 0.00 0.00 35.39 2.73
4276 8041 7.683437 TTCTAGAGATTTCAACGAGTGACTA 57.317 36.000 0.00 0.00 35.39 2.59
4277 8042 6.576662 TTCTAGAGATTTCAACGAGTGACT 57.423 37.500 0.00 0.00 35.39 3.41
4278 8043 7.061326 GTCTTTCTAGAGATTTCAACGAGTGAC 59.939 40.741 0.00 0.00 35.39 3.67
4279 8044 7.085116 GTCTTTCTAGAGATTTCAACGAGTGA 58.915 38.462 0.00 0.00 0.00 3.41
4280 8045 6.863645 TGTCTTTCTAGAGATTTCAACGAGTG 59.136 38.462 0.00 0.00 0.00 3.51
4281 8046 6.982852 TGTCTTTCTAGAGATTTCAACGAGT 58.017 36.000 0.00 0.00 0.00 4.18
4282 8047 7.875316 TTGTCTTTCTAGAGATTTCAACGAG 57.125 36.000 0.00 0.00 0.00 4.18
4283 8048 8.833231 ATTTGTCTTTCTAGAGATTTCAACGA 57.167 30.769 0.00 0.00 0.00 3.85
4294 8059 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4295 8060 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4296 8061 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4297 8062 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4298 8063 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4299 8064 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4300 8065 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4301 8066 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4302 8067 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4303 8068 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4304 8069 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4305 8070 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4306 8071 6.785963 TGATACTCCCTCCGTTCCTAAATATT 59.214 38.462 0.00 0.00 0.00 1.28
4307 8072 6.320518 TGATACTCCCTCCGTTCCTAAATAT 58.679 40.000 0.00 0.00 0.00 1.28
4308 8073 5.708544 TGATACTCCCTCCGTTCCTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
4309 8074 4.553678 TGATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
4310 8075 3.985127 TGATACTCCCTCCGTTCCTAAA 58.015 45.455 0.00 0.00 0.00 1.85
4311 8076 3.675348 TGATACTCCCTCCGTTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
4312 8077 3.398292 AGATGATACTCCCTCCGTTCCTA 59.602 47.826 0.00 0.00 0.00 2.94
4313 8078 2.178106 AGATGATACTCCCTCCGTTCCT 59.822 50.000 0.00 0.00 0.00 3.36
4314 8079 2.599677 AGATGATACTCCCTCCGTTCC 58.400 52.381 0.00 0.00 0.00 3.62
4315 8080 4.158764 CCATAGATGATACTCCCTCCGTTC 59.841 50.000 0.00 0.00 0.00 3.95
4316 8081 4.090090 CCATAGATGATACTCCCTCCGTT 58.910 47.826 0.00 0.00 0.00 4.44
4317 8082 3.076182 ACCATAGATGATACTCCCTCCGT 59.924 47.826 0.00 0.00 0.00 4.69
4318 8083 3.445450 CACCATAGATGATACTCCCTCCG 59.555 52.174 0.00 0.00 0.00 4.63
4319 8084 4.678256 TCACCATAGATGATACTCCCTCC 58.322 47.826 0.00 0.00 0.00 4.30
4320 8085 6.672266 TTTCACCATAGATGATACTCCCTC 57.328 41.667 0.00 0.00 0.00 4.30
4321 8086 7.639062 ATTTTCACCATAGATGATACTCCCT 57.361 36.000 0.00 0.00 0.00 4.20
4322 8087 9.965902 ATTATTTTCACCATAGATGATACTCCC 57.034 33.333 0.00 0.00 0.00 4.30
4394 8159 7.438160 TGTCATTAGCATAGAATGTCTAAACGG 59.562 37.037 0.00 0.00 36.02 4.44
4571 8336 7.366847 ACAGCCTATGTTACAACTCAGATAT 57.633 36.000 0.00 0.00 39.96 1.63
4631 8397 7.945134 AGCAGTTCACACAAGAAAAATAGATT 58.055 30.769 0.00 0.00 0.00 2.40
4671 8437 1.270550 GACGTTCGGGGTTAGAGAACA 59.729 52.381 8.06 0.00 43.00 3.18
5069 8848 0.613260 TCGCAATTAGCCAGGTGAGT 59.387 50.000 0.00 0.00 41.38 3.41
5148 8927 4.202284 GGGAAAAAGTGGTAAAGGGGAAAC 60.202 45.833 0.00 0.00 0.00 2.78
5401 9180 2.969443 ACTCACCAAATTCTTTCGCG 57.031 45.000 0.00 0.00 0.00 5.87
5427 9206 8.837788 AATCTTATCGCTGTCATTAATCATCA 57.162 30.769 0.00 0.00 0.00 3.07
5469 9248 2.871633 CTGCCACACCAACAAAATTTCC 59.128 45.455 0.00 0.00 0.00 3.13
5598 9621 4.895297 ACTTATAAGGGACCATTTGGCATG 59.105 41.667 16.73 0.00 39.32 4.06
6023 10060 9.438228 AGACAATAAAAGGAAGAGTAAGCTAAC 57.562 33.333 0.00 0.00 0.00 2.34
6232 10269 8.986847 CATATGAACAAGATAAAGTAGCAGAGG 58.013 37.037 0.00 0.00 0.00 3.69
6283 10320 9.912634 CAATACAACACCTGAAAGATAAATGTT 57.087 29.630 0.00 0.00 34.07 2.71
6286 10323 8.960591 CCTCAATACAACACCTGAAAGATAAAT 58.039 33.333 0.00 0.00 34.07 1.40
6342 10379 0.882474 GCGGTATCTCGTAGCCATCT 59.118 55.000 0.00 0.00 0.00 2.90
6754 10791 5.126061 GGTCGTTACAAGATCAACCCTAGTA 59.874 44.000 0.00 0.00 0.00 1.82
6757 10794 3.196254 GGGTCGTTACAAGATCAACCCTA 59.804 47.826 0.00 0.00 41.37 3.53
6764 10801 6.509656 TGTATGTATGGGTCGTTACAAGATC 58.490 40.000 0.00 0.00 32.46 2.75
6776 10813 7.039293 TCGTATTTCAGCTATGTATGTATGGGT 60.039 37.037 0.00 0.00 0.00 4.51
7057 11099 3.709633 AGTCCAGGCGCATGCAGA 61.710 61.111 18.18 6.73 45.35 4.26
7183 11226 2.649531 AGTCCAGTATCGGAGAGAGG 57.350 55.000 0.00 0.00 43.63 3.69
7195 11238 2.285707 TGGAGGTAGGAGTAGTCCAGT 58.714 52.381 19.00 1.41 46.80 4.00
7244 11287 0.884704 TTCCTCTGCGTTTGTGCTCC 60.885 55.000 0.00 0.00 35.36 4.70
7516 11600 6.319658 TGCTTTCACAAGAAGAGACAAGAATT 59.680 34.615 0.00 0.00 34.71 2.17
7539 11623 0.531974 TGACGAGCCCCGATTATTGC 60.532 55.000 2.99 0.00 41.76 3.56
7540 11624 1.068588 TCTGACGAGCCCCGATTATTG 59.931 52.381 2.99 0.00 41.76 1.90
7541 11625 1.410004 TCTGACGAGCCCCGATTATT 58.590 50.000 2.99 0.00 41.76 1.40
7542 11626 1.410004 TTCTGACGAGCCCCGATTAT 58.590 50.000 2.99 0.00 41.76 1.28
7543 11627 1.410004 ATTCTGACGAGCCCCGATTA 58.590 50.000 2.99 0.00 41.76 1.75
7544 11628 0.541863 AATTCTGACGAGCCCCGATT 59.458 50.000 2.99 0.00 41.76 3.34
7545 11629 0.179073 CAATTCTGACGAGCCCCGAT 60.179 55.000 2.99 0.00 41.76 4.18
7546 11630 1.218047 CAATTCTGACGAGCCCCGA 59.782 57.895 2.99 0.00 41.76 5.14
7547 11631 0.179073 ATCAATTCTGACGAGCCCCG 60.179 55.000 0.00 0.00 45.44 5.73
7548 11632 1.303309 CATCAATTCTGACGAGCCCC 58.697 55.000 0.00 0.00 33.30 5.80
7549 11633 1.667724 CACATCAATTCTGACGAGCCC 59.332 52.381 0.00 0.00 33.30 5.19
7550 11634 2.349886 GACACATCAATTCTGACGAGCC 59.650 50.000 0.00 0.00 33.30 4.70
7551 11635 2.995939 TGACACATCAATTCTGACGAGC 59.004 45.455 0.00 0.00 33.30 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.