Multiple sequence alignment - TraesCS2A01G290100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G290100 chr2A 100.000 3093 0 0 1 3093 499577773 499580865 0.000000e+00 5712.0
1 TraesCS2A01G290100 chr2A 94.408 304 17 0 2761 3064 155766773 155766470 4.670000e-128 468.0
2 TraesCS2A01G290100 chr2A 91.489 329 24 4 2760 3085 780720747 780721074 1.690000e-122 449.0
3 TraesCS2A01G290100 chr2A 87.931 58 7 0 1001 1058 498841739 498841682 5.530000e-08 69.4
4 TraesCS2A01G290100 chr2B 91.600 2512 110 51 159 2631 438457852 438460301 0.000000e+00 3376.0
5 TraesCS2A01G290100 chr2B 94.118 306 18 0 2759 3064 389456924 389457229 1.680000e-127 466.0
6 TraesCS2A01G290100 chr2B 91.489 329 25 3 2759 3085 24865913 24866240 1.690000e-122 449.0
7 TraesCS2A01G290100 chr2B 96.512 86 2 1 3 87 438457489 438457574 1.160000e-29 141.0
8 TraesCS2A01G290100 chr2B 85.612 139 10 4 2626 2760 438463892 438464024 1.500000e-28 137.0
9 TraesCS2A01G290100 chr2B 87.097 62 8 0 997 1058 437382834 437382773 1.540000e-08 71.3
10 TraesCS2A01G290100 chr2D 94.184 2201 76 22 591 2760 368934680 368936859 0.000000e+00 3308.0
11 TraesCS2A01G290100 chr2D 87.636 275 13 10 3 273 368933612 368933869 1.800000e-77 300.0
12 TraesCS2A01G290100 chr2D 90.000 240 5 9 283 519 368933914 368934137 3.020000e-75 292.0
13 TraesCS2A01G290100 chr2D 85.714 56 8 0 1001 1056 368526113 368526058 3.330000e-05 60.2
14 TraesCS2A01G290100 chr7A 94.444 306 17 0 2760 3065 727101583 727101278 3.610000e-129 472.0
15 TraesCS2A01G290100 chr4A 94.389 303 17 0 2762 3064 640208883 640209185 1.680000e-127 466.0
16 TraesCS2A01G290100 chr4A 92.070 227 17 1 1713 1939 632187595 632187370 4.980000e-83 318.0
17 TraesCS2A01G290100 chr4A 91.304 207 13 2 1852 2058 632176899 632176698 8.450000e-71 278.0
18 TraesCS2A01G290100 chr5A 92.260 323 23 2 2744 3064 471460296 471460618 1.010000e-124 457.0
19 TraesCS2A01G290100 chr7B 92.025 326 23 2 2760 3084 124131896 124132219 3.640000e-124 455.0
20 TraesCS2A01G290100 chr7B 92.000 325 20 5 2751 3072 603248037 603248358 4.700000e-123 451.0
21 TraesCS2A01G290100 chr1B 90.645 310 28 1 1634 1942 255693147 255693456 7.980000e-111 411.0
22 TraesCS2A01G290100 chr1B 90.645 310 28 1 1634 1942 623390730 623391039 7.980000e-111 411.0
23 TraesCS2A01G290100 chr1B 91.304 207 16 2 1852 2058 623391042 623391246 6.530000e-72 281.0
24 TraesCS2A01G290100 chr1B 90.821 207 18 1 1852 2058 255693459 255693664 3.040000e-70 276.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G290100 chr2A 499577773 499580865 3092 False 5712.0 5712 100.000000 1 3093 1 chr2A.!!$F1 3092
1 TraesCS2A01G290100 chr2B 438457489 438464024 6535 False 1218.0 3376 91.241333 3 2760 3 chr2B.!!$F3 2757
2 TraesCS2A01G290100 chr2D 368933612 368936859 3247 False 1300.0 3308 90.606667 3 2760 3 chr2D.!!$F1 2757
3 TraesCS2A01G290100 chr1B 623390730 623391246 516 False 346.0 411 90.974500 1634 2058 2 chr1B.!!$F2 424
4 TraesCS2A01G290100 chr1B 255693147 255693664 517 False 343.5 411 90.733000 1634 2058 2 chr1B.!!$F1 424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 503 0.035247 TGTCTGCATGGCATGTGCTA 60.035 50.0 26.94 11.49 42.92 3.49 F
589 1160 0.178301 GTCTCCGTTCCCATCTTCCC 59.822 60.0 0.00 0.00 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 2271 0.834612 AACCCAAGAACTCGTGTCCA 59.165 50.0 0.00 0.0 0.00 4.02 R
2475 3448 0.317770 CCAGCAAACGTTCGCATGTT 60.318 50.0 14.59 0.0 33.16 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 169 3.687102 CGTGCCCGGTACTGTGGA 61.687 66.667 12.05 0.00 0.00 4.02
168 170 2.987125 GTGCCCGGTACTGTGGAT 59.013 61.111 12.05 0.00 0.00 3.41
207 437 3.540211 CTCGATGAGCTGGTTGGTT 57.460 52.632 0.00 0.00 0.00 3.67
218 448 0.749649 TGGTTGGTTTGGTGATGTGC 59.250 50.000 0.00 0.00 0.00 4.57
252 482 2.813179 CGCGCGCCAAATAAGCTCT 61.813 57.895 27.72 0.00 0.00 4.09
257 487 2.519963 GCGCCAAATAAGCTCTTTGTC 58.480 47.619 16.28 6.77 32.83 3.18
263 493 5.100259 CCAAATAAGCTCTTTGTCTGCATG 58.900 41.667 16.28 0.00 32.83 4.06
273 503 0.035247 TGTCTGCATGGCATGTGCTA 60.035 50.000 26.94 11.49 42.92 3.49
275 505 0.253894 TCTGCATGGCATGTGCTAGT 59.746 50.000 26.94 0.00 42.92 2.57
276 506 0.661552 CTGCATGGCATGTGCTAGTC 59.338 55.000 26.94 10.28 42.92 2.59
278 508 1.485895 TGCATGGCATGTGCTAGTCTA 59.514 47.619 26.94 0.00 42.92 2.59
279 509 1.869767 GCATGGCATGTGCTAGTCTAC 59.130 52.381 26.94 4.16 41.70 2.59
280 510 2.130395 CATGGCATGTGCTAGTCTACG 58.870 52.381 19.32 0.00 41.70 3.51
281 511 1.182667 TGGCATGTGCTAGTCTACGT 58.817 50.000 4.84 0.00 41.70 3.57
303 568 2.743928 GTCGCTTGGACCCAGCTG 60.744 66.667 15.15 6.78 39.90 4.24
304 569 4.704833 TCGCTTGGACCCAGCTGC 62.705 66.667 15.15 7.98 0.00 5.25
307 572 3.970410 CTTGGACCCAGCTGCCCA 61.970 66.667 8.66 12.19 0.00 5.36
318 583 0.183014 AGCTGCCCAGATCAATCAGG 59.817 55.000 0.00 0.00 33.64 3.86
405 670 1.988956 AGCAGGACAGGAGCAGGAG 60.989 63.158 0.00 0.00 0.00 3.69
406 671 2.583520 CAGGACAGGAGCAGGAGC 59.416 66.667 0.00 0.00 42.56 4.70
407 672 2.121385 AGGACAGGAGCAGGAGCA 59.879 61.111 0.00 0.00 45.49 4.26
408 673 1.988956 AGGACAGGAGCAGGAGCAG 60.989 63.158 0.00 0.00 45.49 4.24
409 674 2.583520 GACAGGAGCAGGAGCAGG 59.416 66.667 0.00 0.00 45.49 4.85
410 675 1.986757 GACAGGAGCAGGAGCAGGA 60.987 63.158 0.00 0.00 45.49 3.86
422 687 2.188994 GCAGGACCAGGCTGCTAG 59.811 66.667 9.56 0.00 40.58 3.42
544 1114 6.980397 CCCCATTTATTGAATTCAGCTGTTAC 59.020 38.462 14.67 4.94 0.00 2.50
555 1126 2.045340 CTGTTACCCGGCCCAAGG 60.045 66.667 0.00 0.00 0.00 3.61
585 1156 2.893398 GCGTCTCCGTTCCCATCT 59.107 61.111 0.00 0.00 36.15 2.90
587 1158 0.806492 GCGTCTCCGTTCCCATCTTC 60.806 60.000 0.00 0.00 36.15 2.87
588 1159 0.179108 CGTCTCCGTTCCCATCTTCC 60.179 60.000 0.00 0.00 0.00 3.46
589 1160 0.178301 GTCTCCGTTCCCATCTTCCC 59.822 60.000 0.00 0.00 0.00 3.97
603 1343 4.415735 CATCTTCCCTTTTTCTTTAGCGC 58.584 43.478 0.00 0.00 0.00 5.92
647 1387 2.762472 CATCACGCAATCTGTTTCGTC 58.238 47.619 0.00 0.00 32.38 4.20
711 1451 3.035942 CGCAAATTACCGCATCTTTAGC 58.964 45.455 0.00 0.00 0.00 3.09
723 1463 4.728917 CATCTTTAGCTGCTGTAGATGC 57.271 45.455 27.55 0.00 36.78 3.91
734 1474 4.629092 TGCTGTAGATGCAGATTGATCTC 58.371 43.478 1.81 0.00 38.70 2.75
742 1508 3.276857 TGCAGATTGATCTCTCTTTGGC 58.723 45.455 0.00 0.00 34.22 4.52
852 1621 0.449388 CCGCTTCAAGTCATGGCTTC 59.551 55.000 10.26 0.00 0.00 3.86
897 1666 3.036091 CGTATAAAACCTCCCTCCCTCA 58.964 50.000 0.00 0.00 0.00 3.86
1156 1927 3.901797 GAGGGTGCTGGGAACACGG 62.902 68.421 0.00 0.00 38.98 4.94
1200 1971 0.889186 ATCCCACTTGGCACGACAAC 60.889 55.000 0.00 0.00 0.00 3.32
1495 2270 6.874278 TCTCTTTCTATCTTGGTGATTGGA 57.126 37.500 0.00 0.00 36.65 3.53
1496 2271 7.443302 TCTCTTTCTATCTTGGTGATTGGAT 57.557 36.000 0.00 0.00 36.65 3.41
1497 2272 7.278135 TCTCTTTCTATCTTGGTGATTGGATG 58.722 38.462 0.00 0.00 36.65 3.51
1498 2273 6.359804 TCTTTCTATCTTGGTGATTGGATGG 58.640 40.000 0.00 0.00 36.65 3.51
1499 2274 5.974156 TTCTATCTTGGTGATTGGATGGA 57.026 39.130 0.00 0.00 36.65 3.41
1501 2276 4.721274 TCTATCTTGGTGATTGGATGGACA 59.279 41.667 0.00 0.00 36.65 4.02
1502 2277 3.071874 TCTTGGTGATTGGATGGACAC 57.928 47.619 0.00 0.00 0.00 3.67
1503 2278 1.739466 CTTGGTGATTGGATGGACACG 59.261 52.381 0.00 0.00 34.59 4.49
1504 2279 0.980423 TGGTGATTGGATGGACACGA 59.020 50.000 0.00 0.00 34.59 4.35
1505 2280 1.066215 TGGTGATTGGATGGACACGAG 60.066 52.381 0.00 0.00 34.59 4.18
1507 2282 2.615493 GGTGATTGGATGGACACGAGTT 60.615 50.000 0.00 0.00 34.59 3.01
1508 2283 2.673368 GTGATTGGATGGACACGAGTTC 59.327 50.000 0.00 0.00 0.00 3.01
1509 2284 2.567169 TGATTGGATGGACACGAGTTCT 59.433 45.455 0.00 0.00 0.00 3.01
1510 2285 3.007940 TGATTGGATGGACACGAGTTCTT 59.992 43.478 0.00 0.00 0.00 2.52
1511 2286 2.455674 TGGATGGACACGAGTTCTTG 57.544 50.000 0.00 0.00 0.00 3.02
1523 2298 2.665519 CGAGTTCTTGGGTTTGATTGCG 60.666 50.000 0.00 0.00 0.00 4.85
1552 2327 5.998454 ATTGATTCGTGGTGATTCTGATC 57.002 39.130 0.00 0.00 0.00 2.92
1741 2517 3.880846 CAGATTTGCGCCGAGGGC 61.881 66.667 4.18 0.00 46.75 5.19
2095 3056 2.200067 CATGTCCTGCTCTCGTGATTC 58.800 52.381 0.00 0.00 0.00 2.52
2161 3132 0.599558 GCAGGCTTGATCAACTTGCA 59.400 50.000 25.59 2.31 0.00 4.08
2225 3196 1.701704 GGTGCTTCAAGAATTTGGCG 58.298 50.000 0.00 0.00 34.97 5.69
2289 3260 5.995897 GTCTAAATGTACAAGTGGTTCCTGT 59.004 40.000 0.00 0.00 0.00 4.00
2297 3268 4.595986 ACAAGTGGTTCCTGTAGTTTTGT 58.404 39.130 0.00 0.00 0.00 2.83
2320 3291 4.967036 AGAGCATATTACTTTCAGGAGCC 58.033 43.478 0.00 0.00 0.00 4.70
2373 3344 3.570550 TGGGTTTGTTATTTCGGACAAGG 59.429 43.478 0.00 0.00 37.12 3.61
2437 3410 5.025986 TGATTTTAGCGTTTTCGTCTTCC 57.974 39.130 0.00 0.00 46.03 3.46
2445 3418 2.735134 CGTTTTCGTCTTCCAAGTAGGG 59.265 50.000 0.00 0.00 36.89 3.53
2451 3424 4.410099 TCGTCTTCCAAGTAGGGTTAGAA 58.590 43.478 0.00 0.00 38.24 2.10
2500 3475 1.199852 CGAACGTTTGCTGGCACAAC 61.200 55.000 0.46 3.25 38.70 3.32
2527 3502 6.088749 TGGCAAATCGAACGTTTTTCATAATG 59.911 34.615 0.46 0.00 0.00 1.90
2568 3543 9.704098 GGATAACGATTTTCTTTAGTAAGCAAG 57.296 33.333 0.00 0.00 0.00 4.01
2581 3556 0.603065 AAGCAAGGACAAATTCGGCC 59.397 50.000 0.00 0.00 0.00 6.13
2604 3579 6.992715 GCCTGTTCTATTCTTTGCTAGGATTA 59.007 38.462 0.00 0.00 0.00 1.75
2676 7248 4.219115 AGAAGATTTCCGATGCTCTCCTA 58.781 43.478 0.00 0.00 0.00 2.94
2680 7252 4.837860 AGATTTCCGATGCTCTCCTAGAAT 59.162 41.667 0.00 0.00 0.00 2.40
2684 7256 3.706594 TCCGATGCTCTCCTAGAATGTTT 59.293 43.478 0.00 0.00 0.00 2.83
2685 7257 4.162320 TCCGATGCTCTCCTAGAATGTTTT 59.838 41.667 0.00 0.00 0.00 2.43
2686 7258 4.509600 CCGATGCTCTCCTAGAATGTTTTC 59.490 45.833 0.00 0.00 0.00 2.29
2723 7298 5.047092 CCCTTTGTTCATGGCATAGTTTTCT 60.047 40.000 0.00 0.00 0.00 2.52
2752 7327 2.149973 GGCACCTCCAATCAAGGAAT 57.850 50.000 0.00 0.00 37.20 3.01
2756 7331 3.511146 GCACCTCCAATCAAGGAATCAAA 59.489 43.478 0.00 0.00 37.20 2.69
2760 7335 6.154021 CACCTCCAATCAAGGAATCAAAGATT 59.846 38.462 0.00 0.00 37.20 2.40
2761 7336 6.154021 ACCTCCAATCAAGGAATCAAAGATTG 59.846 38.462 11.32 11.32 43.04 2.67
2762 7337 5.969423 TCCAATCAAGGAATCAAAGATTGC 58.031 37.500 12.27 3.43 42.43 3.56
2763 7338 4.802039 CCAATCAAGGAATCAAAGATTGCG 59.198 41.667 12.27 5.65 42.43 4.85
2764 7339 5.393352 CCAATCAAGGAATCAAAGATTGCGA 60.393 40.000 12.27 0.00 42.43 5.10
2765 7340 5.902613 ATCAAGGAATCAAAGATTGCGAA 57.097 34.783 5.75 0.00 0.00 4.70
2766 7341 5.902613 TCAAGGAATCAAAGATTGCGAAT 57.097 34.783 5.75 0.00 0.00 3.34
2767 7342 5.883661 TCAAGGAATCAAAGATTGCGAATC 58.116 37.500 5.75 0.00 38.20 2.52
2768 7343 5.415389 TCAAGGAATCAAAGATTGCGAATCA 59.585 36.000 5.75 0.00 40.42 2.57
2769 7344 5.902613 AGGAATCAAAGATTGCGAATCAA 57.097 34.783 5.75 0.00 40.42 2.57
2771 7346 6.870769 AGGAATCAAAGATTGCGAATCAATT 58.129 32.000 5.75 4.06 44.95 2.32
2772 7347 7.325694 AGGAATCAAAGATTGCGAATCAATTT 58.674 30.769 5.75 2.71 44.95 1.82
2773 7348 7.277098 AGGAATCAAAGATTGCGAATCAATTTG 59.723 33.333 5.75 11.45 44.95 2.32
2774 7349 7.063780 GGAATCAAAGATTGCGAATCAATTTGT 59.936 33.333 15.17 5.72 44.95 2.83
2775 7350 6.693761 TCAAAGATTGCGAATCAATTTGTG 57.306 33.333 15.17 5.86 44.95 3.33
2776 7351 5.634439 TCAAAGATTGCGAATCAATTTGTGG 59.366 36.000 15.17 0.00 44.95 4.17
2777 7352 4.789012 AGATTGCGAATCAATTTGTGGT 57.211 36.364 10.26 0.00 44.95 4.16
2778 7353 5.138125 AGATTGCGAATCAATTTGTGGTT 57.862 34.783 10.26 0.00 44.95 3.67
2779 7354 4.925054 AGATTGCGAATCAATTTGTGGTTG 59.075 37.500 10.26 0.00 44.95 3.77
2780 7355 3.998099 TGCGAATCAATTTGTGGTTGA 57.002 38.095 0.00 0.00 39.65 3.18
2781 7356 3.899734 TGCGAATCAATTTGTGGTTGAG 58.100 40.909 0.00 0.00 38.81 3.02
2782 7357 3.317711 TGCGAATCAATTTGTGGTTGAGT 59.682 39.130 0.00 0.00 38.81 3.41
2783 7358 4.202101 TGCGAATCAATTTGTGGTTGAGTT 60.202 37.500 0.00 0.00 38.81 3.01
2784 7359 4.148696 GCGAATCAATTTGTGGTTGAGTTG 59.851 41.667 0.00 0.00 38.81 3.16
2785 7360 4.681025 CGAATCAATTTGTGGTTGAGTTGG 59.319 41.667 0.00 0.00 38.81 3.77
2786 7361 5.600696 GAATCAATTTGTGGTTGAGTTGGT 58.399 37.500 0.00 0.00 38.81 3.67
2787 7362 5.612725 ATCAATTTGTGGTTGAGTTGGTT 57.387 34.783 0.00 0.00 38.81 3.67
2788 7363 6.723298 ATCAATTTGTGGTTGAGTTGGTTA 57.277 33.333 0.00 0.00 38.81 2.85
2789 7364 6.142818 TCAATTTGTGGTTGAGTTGGTTAG 57.857 37.500 0.00 0.00 32.23 2.34
2790 7365 5.068460 TCAATTTGTGGTTGAGTTGGTTAGG 59.932 40.000 0.00 0.00 32.23 2.69
2791 7366 3.655615 TTGTGGTTGAGTTGGTTAGGT 57.344 42.857 0.00 0.00 0.00 3.08
2792 7367 2.925724 TGTGGTTGAGTTGGTTAGGTG 58.074 47.619 0.00 0.00 0.00 4.00
2793 7368 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
2794 7369 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
2795 7370 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
2796 7371 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
2797 7372 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
2798 7373 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
2799 7374 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
2800 7375 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
2801 7376 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
2802 7377 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
2803 7378 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
2804 7379 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
2805 7380 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
2806 7381 3.105283 GTTAGGTGGACAGTGGTATCCT 58.895 50.000 0.00 0.00 35.86 3.24
2807 7382 1.867363 AGGTGGACAGTGGTATCCTC 58.133 55.000 0.00 0.00 35.86 3.71
2808 7383 1.078823 AGGTGGACAGTGGTATCCTCA 59.921 52.381 0.00 0.00 35.86 3.86
2809 7384 1.906574 GGTGGACAGTGGTATCCTCAA 59.093 52.381 0.00 0.00 35.86 3.02
2810 7385 2.354805 GGTGGACAGTGGTATCCTCAAC 60.355 54.545 0.00 0.00 35.86 3.18
2811 7386 1.906574 TGGACAGTGGTATCCTCAACC 59.093 52.381 0.00 0.00 35.86 3.77
2812 7387 1.209747 GGACAGTGGTATCCTCAACCC 59.790 57.143 0.00 0.00 36.06 4.11
2813 7388 1.906574 GACAGTGGTATCCTCAACCCA 59.093 52.381 0.00 0.00 36.06 4.51
2814 7389 2.505819 GACAGTGGTATCCTCAACCCAT 59.494 50.000 0.00 0.00 36.06 4.00
2815 7390 2.505819 ACAGTGGTATCCTCAACCCATC 59.494 50.000 0.00 0.00 36.06 3.51
2816 7391 2.505407 CAGTGGTATCCTCAACCCATCA 59.495 50.000 0.00 0.00 36.06 3.07
2817 7392 2.774234 AGTGGTATCCTCAACCCATCAG 59.226 50.000 0.00 0.00 36.06 2.90
2818 7393 2.126882 TGGTATCCTCAACCCATCAGG 58.873 52.381 0.00 0.00 43.78 3.86
2834 7409 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
2835 7410 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
2836 7411 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
2837 7412 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
2838 7413 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
2839 7414 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
2840 7415 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
2841 7416 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
2842 7417 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
2843 7418 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
2844 7419 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
2845 7420 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
2846 7421 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
2847 7422 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
2848 7423 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
2849 7424 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
2850 7425 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
2851 7426 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
2852 7427 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
2853 7428 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
2854 7429 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
2855 7430 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
2856 7431 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
2857 7432 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
2858 7433 7.147976 GCTCGCATTATTCCTGGATTTATTTT 58.852 34.615 0.00 0.00 0.00 1.82
2859 7434 8.296713 GCTCGCATTATTCCTGGATTTATTTTA 58.703 33.333 0.00 0.00 0.00 1.52
2860 7435 9.831737 CTCGCATTATTCCTGGATTTATTTTAG 57.168 33.333 0.00 0.00 0.00 1.85
2861 7436 8.792633 TCGCATTATTCCTGGATTTATTTTAGG 58.207 33.333 0.00 0.00 0.00 2.69
2862 7437 8.792633 CGCATTATTCCTGGATTTATTTTAGGA 58.207 33.333 0.00 0.00 35.84 2.94
2868 7443 7.817418 TCCTGGATTTATTTTAGGATTTCCG 57.183 36.000 0.00 0.00 42.08 4.30
2869 7444 6.775629 TCCTGGATTTATTTTAGGATTTCCGG 59.224 38.462 0.00 0.00 42.08 5.14
2870 7445 6.399639 TGGATTTATTTTAGGATTTCCGGC 57.600 37.500 0.00 0.00 42.08 6.13
2871 7446 5.009210 TGGATTTATTTTAGGATTTCCGGCG 59.991 40.000 0.00 0.00 42.08 6.46
2872 7447 5.239963 GGATTTATTTTAGGATTTCCGGCGA 59.760 40.000 9.30 0.00 42.08 5.54
2873 7448 6.072119 GGATTTATTTTAGGATTTCCGGCGAT 60.072 38.462 9.30 0.00 42.08 4.58
2874 7449 7.120138 GGATTTATTTTAGGATTTCCGGCGATA 59.880 37.037 9.30 0.00 42.08 2.92
2875 7450 6.790285 TTATTTTAGGATTTCCGGCGATAC 57.210 37.500 9.30 0.00 42.08 2.24
2876 7451 2.427232 TTAGGATTTCCGGCGATACG 57.573 50.000 9.30 0.00 42.08 3.06
2888 7463 3.733236 CGATACGCTTTCAGTGGGA 57.267 52.632 0.00 0.00 0.00 4.37
2889 7464 1.560923 CGATACGCTTTCAGTGGGAG 58.439 55.000 0.00 0.00 0.00 4.30
2890 7465 1.802880 CGATACGCTTTCAGTGGGAGG 60.803 57.143 0.00 0.00 0.00 4.30
2891 7466 1.480954 GATACGCTTTCAGTGGGAGGA 59.519 52.381 0.00 0.00 0.00 3.71
2892 7467 0.895530 TACGCTTTCAGTGGGAGGAG 59.104 55.000 0.00 0.00 0.00 3.69
2893 7468 0.832135 ACGCTTTCAGTGGGAGGAGA 60.832 55.000 0.00 0.00 0.00 3.71
2894 7469 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
2895 7470 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
2896 7471 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
2897 7472 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
2898 7473 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
2906 7481 4.808649 GGAGACGTTCCCATCGAC 57.191 61.111 0.00 0.00 40.37 4.20
2907 7482 1.226603 GGAGACGTTCCCATCGACG 60.227 63.158 0.00 0.00 44.34 5.12
2908 7483 1.651240 GGAGACGTTCCCATCGACGA 61.651 60.000 0.00 0.00 41.53 4.20
2909 7484 0.381089 GAGACGTTCCCATCGACGAT 59.619 55.000 4.05 4.05 41.53 3.73
2910 7485 0.100682 AGACGTTCCCATCGACGATG 59.899 55.000 27.22 27.22 41.53 3.84
2911 7486 0.099968 GACGTTCCCATCGACGATGA 59.900 55.000 33.73 16.10 42.09 2.92
2912 7487 0.100682 ACGTTCCCATCGACGATGAG 59.899 55.000 33.73 23.94 42.09 2.90
2913 7488 0.595053 CGTTCCCATCGACGATGAGG 60.595 60.000 33.73 29.66 42.09 3.86
2914 7489 0.876342 GTTCCCATCGACGATGAGGC 60.876 60.000 33.73 18.45 42.09 4.70
2921 7496 2.353607 GACGATGAGGCGCCTACG 60.354 66.667 32.91 32.91 44.07 3.51
2922 7497 3.825833 GACGATGAGGCGCCTACGG 62.826 68.421 35.27 25.72 40.57 4.02
2923 7498 3.900892 CGATGAGGCGCCTACGGT 61.901 66.667 32.97 15.82 40.57 4.83
2924 7499 2.279517 GATGAGGCGCCTACGGTG 60.280 66.667 32.97 0.00 40.57 4.94
2925 7500 2.758327 ATGAGGCGCCTACGGTGA 60.758 61.111 32.97 9.65 40.57 4.02
2926 7501 2.955751 GATGAGGCGCCTACGGTGAC 62.956 65.000 32.97 16.10 42.50 3.67
2929 7504 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
2930 7505 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
2931 7506 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
2932 7507 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
2933 7508 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
2934 7509 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
2935 7510 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
2936 7511 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
2937 7512 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
2938 7513 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
2939 7514 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
2940 7515 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
2941 7516 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
2942 7517 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
2943 7518 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
2944 7519 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
2945 7520 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
2946 7521 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
2947 7522 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
2948 7523 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
2949 7524 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
2950 7525 8.824159 ACTTCGTAAATCTCAAGATGATATGG 57.176 34.615 0.00 0.00 34.49 2.74
2951 7526 7.386299 ACTTCGTAAATCTCAAGATGATATGGC 59.614 37.037 0.00 0.00 34.49 4.40
2952 7527 5.863935 TCGTAAATCTCAAGATGATATGGCG 59.136 40.000 0.00 0.00 34.49 5.69
2953 7528 5.062683 CGTAAATCTCAAGATGATATGGCGG 59.937 44.000 0.00 0.00 34.49 6.13
2954 7529 2.462456 TCTCAAGATGATATGGCGGC 57.538 50.000 0.00 0.00 0.00 6.53
2955 7530 1.973515 TCTCAAGATGATATGGCGGCT 59.026 47.619 11.43 0.00 0.00 5.52
2956 7531 2.028658 TCTCAAGATGATATGGCGGCTC 60.029 50.000 11.43 0.00 0.00 4.70
2957 7532 1.693606 TCAAGATGATATGGCGGCTCA 59.306 47.619 11.43 6.15 0.00 4.26
2958 7533 2.074576 CAAGATGATATGGCGGCTCAG 58.925 52.381 11.43 0.00 0.00 3.35
2959 7534 1.346062 AGATGATATGGCGGCTCAGT 58.654 50.000 11.43 0.00 0.00 3.41
2960 7535 1.274728 AGATGATATGGCGGCTCAGTC 59.725 52.381 11.43 3.98 0.00 3.51
2961 7536 1.274728 GATGATATGGCGGCTCAGTCT 59.725 52.381 11.43 0.00 0.00 3.24
2962 7537 0.676184 TGATATGGCGGCTCAGTCTC 59.324 55.000 11.43 0.00 0.00 3.36
2963 7538 0.965439 GATATGGCGGCTCAGTCTCT 59.035 55.000 11.43 0.00 0.00 3.10
2964 7539 0.965439 ATATGGCGGCTCAGTCTCTC 59.035 55.000 11.43 0.00 0.00 3.20
2965 7540 1.448119 TATGGCGGCTCAGTCTCTCG 61.448 60.000 11.43 0.00 0.00 4.04
2966 7541 3.134792 GGCGGCTCAGTCTCTCGA 61.135 66.667 0.00 0.00 0.00 4.04
2967 7542 2.701780 GGCGGCTCAGTCTCTCGAA 61.702 63.158 0.00 0.00 0.00 3.71
2968 7543 1.226547 GCGGCTCAGTCTCTCGAAG 60.227 63.158 0.00 0.00 0.00 3.79
2969 7544 1.649390 GCGGCTCAGTCTCTCGAAGA 61.649 60.000 0.00 0.00 0.00 2.87
2970 7545 1.021202 CGGCTCAGTCTCTCGAAGAT 58.979 55.000 0.00 0.00 36.11 2.40
2971 7546 1.268488 CGGCTCAGTCTCTCGAAGATG 60.268 57.143 0.00 0.00 36.11 2.90
2972 7547 1.535860 GGCTCAGTCTCTCGAAGATGC 60.536 57.143 0.00 0.00 36.11 3.91
2973 7548 1.405105 GCTCAGTCTCTCGAAGATGCT 59.595 52.381 0.00 0.00 36.11 3.79
2974 7549 2.541588 GCTCAGTCTCTCGAAGATGCTC 60.542 54.545 0.00 0.00 36.11 4.26
2975 7550 2.682352 CTCAGTCTCTCGAAGATGCTCA 59.318 50.000 0.00 0.00 36.11 4.26
2976 7551 3.286353 TCAGTCTCTCGAAGATGCTCAT 58.714 45.455 0.00 0.00 36.11 2.90
2977 7552 3.314913 TCAGTCTCTCGAAGATGCTCATC 59.685 47.826 1.75 1.75 36.11 2.92
2978 7553 3.066481 CAGTCTCTCGAAGATGCTCATCA 59.934 47.826 11.90 0.00 40.22 3.07
2979 7554 3.316029 AGTCTCTCGAAGATGCTCATCAG 59.684 47.826 11.90 1.54 40.22 2.90
2980 7555 2.622470 TCTCTCGAAGATGCTCATCAGG 59.378 50.000 11.90 1.65 40.22 3.86
2981 7556 1.685517 TCTCGAAGATGCTCATCAGGG 59.314 52.381 11.90 3.76 40.22 4.45
2982 7557 1.411977 CTCGAAGATGCTCATCAGGGT 59.588 52.381 11.90 0.00 40.22 4.34
2983 7558 2.625314 CTCGAAGATGCTCATCAGGGTA 59.375 50.000 11.90 0.00 40.22 3.69
2984 7559 3.031013 TCGAAGATGCTCATCAGGGTAA 58.969 45.455 11.90 0.00 40.22 2.85
2985 7560 3.450817 TCGAAGATGCTCATCAGGGTAAA 59.549 43.478 11.90 0.00 40.22 2.01
2986 7561 3.806521 CGAAGATGCTCATCAGGGTAAAG 59.193 47.826 11.90 0.00 40.22 1.85
2987 7562 4.681781 CGAAGATGCTCATCAGGGTAAAGT 60.682 45.833 11.90 0.00 40.22 2.66
2988 7563 4.148128 AGATGCTCATCAGGGTAAAGTG 57.852 45.455 11.90 0.00 40.22 3.16
2989 7564 3.521126 AGATGCTCATCAGGGTAAAGTGT 59.479 43.478 11.90 0.00 40.22 3.55
2990 7565 3.057969 TGCTCATCAGGGTAAAGTGTG 57.942 47.619 0.00 0.00 0.00 3.82
2991 7566 1.740025 GCTCATCAGGGTAAAGTGTGC 59.260 52.381 0.00 0.00 0.00 4.57
2992 7567 2.002586 CTCATCAGGGTAAAGTGTGCG 58.997 52.381 0.00 0.00 0.00 5.34
2993 7568 1.346395 TCATCAGGGTAAAGTGTGCGT 59.654 47.619 0.00 0.00 0.00 5.24
2994 7569 1.464608 CATCAGGGTAAAGTGTGCGTG 59.535 52.381 0.00 0.00 0.00 5.34
2995 7570 0.466543 TCAGGGTAAAGTGTGCGTGT 59.533 50.000 0.00 0.00 0.00 4.49
2996 7571 0.586319 CAGGGTAAAGTGTGCGTGTG 59.414 55.000 0.00 0.00 0.00 3.82
2997 7572 0.179468 AGGGTAAAGTGTGCGTGTGT 59.821 50.000 0.00 0.00 0.00 3.72
2998 7573 0.306533 GGGTAAAGTGTGCGTGTGTG 59.693 55.000 0.00 0.00 0.00 3.82
2999 7574 0.316689 GGTAAAGTGTGCGTGTGTGC 60.317 55.000 0.00 0.00 0.00 4.57
3000 7575 0.653323 GTAAAGTGTGCGTGTGTGCG 60.653 55.000 0.00 0.00 37.81 5.34
3001 7576 1.084935 TAAAGTGTGCGTGTGTGCGT 61.085 50.000 0.00 0.00 37.81 5.24
3002 7577 1.917782 AAAGTGTGCGTGTGTGCGTT 61.918 50.000 0.00 0.00 37.81 4.84
3003 7578 1.917782 AAGTGTGCGTGTGTGCGTTT 61.918 50.000 0.00 0.00 37.81 3.60
3004 7579 1.084935 AGTGTGCGTGTGTGCGTTTA 61.085 50.000 0.00 0.00 37.81 2.01
3005 7580 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
3006 7581 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
3007 7582 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
3008 7583 1.072391 TGCGTGTGTGCGTTTATAGG 58.928 50.000 0.00 0.00 37.81 2.57
3009 7584 0.372334 GCGTGTGTGCGTTTATAGGG 59.628 55.000 0.00 0.00 0.00 3.53
3010 7585 1.003851 CGTGTGTGCGTTTATAGGGG 58.996 55.000 0.00 0.00 0.00 4.79
3011 7586 1.673626 CGTGTGTGCGTTTATAGGGGT 60.674 52.381 0.00 0.00 0.00 4.95
3012 7587 1.735571 GTGTGTGCGTTTATAGGGGTG 59.264 52.381 0.00 0.00 0.00 4.61
3013 7588 1.624312 TGTGTGCGTTTATAGGGGTGA 59.376 47.619 0.00 0.00 0.00 4.02
3014 7589 2.277084 GTGTGCGTTTATAGGGGTGAG 58.723 52.381 0.00 0.00 0.00 3.51
3015 7590 1.903860 TGTGCGTTTATAGGGGTGAGT 59.096 47.619 0.00 0.00 0.00 3.41
3016 7591 2.277084 GTGCGTTTATAGGGGTGAGTG 58.723 52.381 0.00 0.00 0.00 3.51
3017 7592 1.903860 TGCGTTTATAGGGGTGAGTGT 59.096 47.619 0.00 0.00 0.00 3.55
3018 7593 3.098377 TGCGTTTATAGGGGTGAGTGTA 58.902 45.455 0.00 0.00 0.00 2.90
3019 7594 3.707611 TGCGTTTATAGGGGTGAGTGTAT 59.292 43.478 0.00 0.00 0.00 2.29
3020 7595 4.056050 GCGTTTATAGGGGTGAGTGTATG 58.944 47.826 0.00 0.00 0.00 2.39
3021 7596 4.056050 CGTTTATAGGGGTGAGTGTATGC 58.944 47.826 0.00 0.00 0.00 3.14
3022 7597 4.056050 GTTTATAGGGGTGAGTGTATGCG 58.944 47.826 0.00 0.00 0.00 4.73
3023 7598 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
3024 7599 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
3025 7600 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
3026 7601 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
3027 7602 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
3028 7603 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
3029 7604 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
3030 7605 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
3031 7606 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
3032 7607 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
3033 7608 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
3034 7609 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
3035 7610 3.004419 AGTGTATGCGCGTGTATATGAGT 59.996 43.478 13.61 1.18 0.00 3.41
3036 7611 3.119628 GTGTATGCGCGTGTATATGAGTG 59.880 47.826 13.61 0.00 0.00 3.51
3037 7612 1.139989 ATGCGCGTGTATATGAGTGC 58.860 50.000 8.43 3.80 40.17 4.40
3038 7613 0.102300 TGCGCGTGTATATGAGTGCT 59.898 50.000 8.43 0.00 40.38 4.40
3039 7614 1.209128 GCGCGTGTATATGAGTGCTT 58.791 50.000 8.43 0.00 37.18 3.91
3040 7615 1.071239 GCGCGTGTATATGAGTGCTTG 60.071 52.381 8.43 0.00 37.18 4.01
3041 7616 2.193447 CGCGTGTATATGAGTGCTTGT 58.807 47.619 0.00 0.00 0.00 3.16
3042 7617 2.034591 CGCGTGTATATGAGTGCTTGTG 60.035 50.000 0.00 0.00 0.00 3.33
3043 7618 2.930040 GCGTGTATATGAGTGCTTGTGT 59.070 45.455 0.00 0.00 0.00 3.72
3044 7619 3.000322 GCGTGTATATGAGTGCTTGTGTC 60.000 47.826 0.00 0.00 0.00 3.67
3045 7620 4.424626 CGTGTATATGAGTGCTTGTGTCT 58.575 43.478 0.00 0.00 0.00 3.41
3046 7621 4.266265 CGTGTATATGAGTGCTTGTGTCTG 59.734 45.833 0.00 0.00 0.00 3.51
3047 7622 5.171476 GTGTATATGAGTGCTTGTGTCTGT 58.829 41.667 0.00 0.00 0.00 3.41
3048 7623 6.330278 GTGTATATGAGTGCTTGTGTCTGTA 58.670 40.000 0.00 0.00 0.00 2.74
3049 7624 6.253727 GTGTATATGAGTGCTTGTGTCTGTAC 59.746 42.308 0.00 0.00 0.00 2.90
3050 7625 5.667539 ATATGAGTGCTTGTGTCTGTACT 57.332 39.130 0.00 0.00 32.11 2.73
3051 7626 3.097877 TGAGTGCTTGTGTCTGTACTG 57.902 47.619 0.00 0.00 29.71 2.74
3052 7627 2.693074 TGAGTGCTTGTGTCTGTACTGA 59.307 45.455 0.00 0.00 29.71 3.41
3053 7628 3.321968 TGAGTGCTTGTGTCTGTACTGAT 59.678 43.478 5.69 0.00 29.71 2.90
3054 7629 3.657634 AGTGCTTGTGTCTGTACTGATG 58.342 45.455 5.69 0.00 0.00 3.07
3055 7630 2.158449 GTGCTTGTGTCTGTACTGATGC 59.842 50.000 5.69 6.69 0.00 3.91
3056 7631 2.037641 TGCTTGTGTCTGTACTGATGCT 59.962 45.455 5.69 0.00 0.00 3.79
3057 7632 3.258123 TGCTTGTGTCTGTACTGATGCTA 59.742 43.478 5.69 0.00 0.00 3.49
3058 7633 4.245660 GCTTGTGTCTGTACTGATGCTAA 58.754 43.478 5.69 0.07 0.00 3.09
3059 7634 4.690748 GCTTGTGTCTGTACTGATGCTAAA 59.309 41.667 5.69 0.00 0.00 1.85
3060 7635 5.179368 GCTTGTGTCTGTACTGATGCTAAAA 59.821 40.000 5.69 0.00 0.00 1.52
3061 7636 6.293407 GCTTGTGTCTGTACTGATGCTAAAAA 60.293 38.462 5.69 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.814294 CGCCTCCGGTACTGGCAC 62.814 72.222 16.58 6.63 46.39 5.01
152 154 0.980754 ATGATCCACAGTACCGGGCA 60.981 55.000 6.32 0.00 0.00 5.36
153 155 0.249911 GATGATCCACAGTACCGGGC 60.250 60.000 6.32 0.00 0.00 6.13
154 156 0.032130 CGATGATCCACAGTACCGGG 59.968 60.000 6.32 0.00 0.00 5.73
157 159 1.806623 GCCACGATGATCCACAGTACC 60.807 57.143 0.00 0.00 0.00 3.34
158 160 1.137086 AGCCACGATGATCCACAGTAC 59.863 52.381 0.00 0.00 0.00 2.73
161 163 1.434622 GCAGCCACGATGATCCACAG 61.435 60.000 0.00 0.00 0.00 3.66
162 164 1.450134 GCAGCCACGATGATCCACA 60.450 57.895 0.00 0.00 0.00 4.17
165 167 2.969238 CGGCAGCCACGATGATCC 60.969 66.667 13.30 0.00 0.00 3.36
166 168 2.106938 TCGGCAGCCACGATGATC 59.893 61.111 13.30 0.00 35.12 2.92
167 169 2.202932 GTCGGCAGCCACGATGAT 60.203 61.111 13.30 0.00 42.82 2.45
204 434 0.317770 CACACGCACATCACCAAACC 60.318 55.000 0.00 0.00 0.00 3.27
205 435 0.934436 GCACACGCACATCACCAAAC 60.934 55.000 0.00 0.00 38.36 2.93
206 436 1.358402 GCACACGCACATCACCAAA 59.642 52.632 0.00 0.00 38.36 3.28
207 437 2.891221 CGCACACGCACATCACCAA 61.891 57.895 0.00 0.00 38.40 3.67
252 482 0.038067 GCACATGCCATGCAGACAAA 60.038 50.000 4.17 0.00 43.65 2.83
257 487 0.661552 GACTAGCACATGCCATGCAG 59.338 55.000 4.17 0.00 45.92 4.41
263 493 1.560923 CACGTAGACTAGCACATGCC 58.439 55.000 0.00 0.00 43.38 4.40
305 570 1.698532 CCCTCTCCCTGATTGATCTGG 59.301 57.143 9.29 9.29 43.26 3.86
306 571 2.633967 CTCCCTCTCCCTGATTGATCTG 59.366 54.545 0.00 0.00 0.00 2.90
307 572 2.427593 CCTCCCTCTCCCTGATTGATCT 60.428 54.545 0.00 0.00 0.00 2.75
318 583 3.791586 GCACTGCCCTCCCTCTCC 61.792 72.222 0.00 0.00 0.00 3.71
319 584 2.686835 AGCACTGCCCTCCCTCTC 60.687 66.667 0.00 0.00 0.00 3.20
320 585 2.686835 GAGCACTGCCCTCCCTCT 60.687 66.667 0.00 0.00 0.00 3.69
321 586 3.791586 GGAGCACTGCCCTCCCTC 61.792 72.222 0.00 0.00 42.46 4.30
406 671 0.749649 CTACTAGCAGCCTGGTCCTG 59.250 60.000 0.00 0.00 34.36 3.86
407 672 0.631753 TCTACTAGCAGCCTGGTCCT 59.368 55.000 0.00 0.00 34.36 3.85
408 673 1.616374 GATCTACTAGCAGCCTGGTCC 59.384 57.143 0.00 0.00 34.36 4.46
409 674 1.616374 GGATCTACTAGCAGCCTGGTC 59.384 57.143 0.00 0.00 34.36 4.02
410 675 1.710816 GGATCTACTAGCAGCCTGGT 58.289 55.000 0.54 0.54 36.65 4.00
422 687 1.742768 CCTGCAGACCCGGATCTAC 59.257 63.158 17.39 0.00 0.00 2.59
446 712 3.937706 AGCGAGTGATCAAGAATTCAAGG 59.062 43.478 8.44 0.00 0.00 3.61
555 1126 4.223964 GACGCGCGGATCAAAGCC 62.224 66.667 35.22 7.17 0.00 4.35
585 1156 3.439129 GCTAGCGCTAAAGAAAAAGGGAA 59.561 43.478 19.37 0.00 0.00 3.97
587 1158 2.097629 GGCTAGCGCTAAAGAAAAAGGG 59.902 50.000 19.37 3.61 36.09 3.95
588 1159 2.223044 CGGCTAGCGCTAAAGAAAAAGG 60.223 50.000 19.37 4.37 36.09 3.11
589 1160 2.415512 ACGGCTAGCGCTAAAGAAAAAG 59.584 45.455 19.37 6.90 36.09 2.27
647 1387 3.484547 GGTAGCGGCGACCAAACG 61.485 66.667 24.79 0.00 36.91 3.60
670 1410 1.725164 GGTCAAAAGTCCGCTACGAAG 59.275 52.381 0.00 0.00 0.00 3.79
723 1463 3.309138 CGTGCCAAAGAGAGATCAATCTG 59.691 47.826 0.00 0.00 37.25 2.90
728 1468 0.391661 GCCGTGCCAAAGAGAGATCA 60.392 55.000 0.00 0.00 0.00 2.92
742 1508 3.214123 CATCCATGCAGGGCCGTG 61.214 66.667 21.22 21.22 38.24 4.94
761 1527 2.155155 GCGAAATAATGGGTCGACGATC 59.845 50.000 9.92 0.00 36.92 3.69
852 1621 2.642700 CGTTTGCGGTTGGGGAAG 59.357 61.111 0.00 0.00 0.00 3.46
897 1666 2.041922 TGGAGGCCTATGCGGAGT 60.042 61.111 4.42 0.00 38.85 3.85
1066 1837 1.040339 ATCTCGTCCTCCAGAGCACC 61.040 60.000 0.00 0.00 34.66 5.01
1458 2229 3.499918 AGAAAGAGAAACGGTGCATGAAG 59.500 43.478 0.00 0.00 0.00 3.02
1495 2270 1.056660 ACCCAAGAACTCGTGTCCAT 58.943 50.000 0.00 0.00 0.00 3.41
1496 2271 0.834612 AACCCAAGAACTCGTGTCCA 59.165 50.000 0.00 0.00 0.00 4.02
1497 2272 1.602377 CAAACCCAAGAACTCGTGTCC 59.398 52.381 0.00 0.00 0.00 4.02
1498 2273 2.557317 TCAAACCCAAGAACTCGTGTC 58.443 47.619 0.00 0.00 0.00 3.67
1499 2274 2.702592 TCAAACCCAAGAACTCGTGT 57.297 45.000 0.00 0.00 0.00 4.49
1501 2276 2.293399 GCAATCAAACCCAAGAACTCGT 59.707 45.455 0.00 0.00 0.00 4.18
1502 2277 2.665519 CGCAATCAAACCCAAGAACTCG 60.666 50.000 0.00 0.00 0.00 4.18
1503 2278 2.922335 GCGCAATCAAACCCAAGAACTC 60.922 50.000 0.30 0.00 0.00 3.01
1504 2279 1.000274 GCGCAATCAAACCCAAGAACT 60.000 47.619 0.30 0.00 0.00 3.01
1505 2280 1.418373 GCGCAATCAAACCCAAGAAC 58.582 50.000 0.30 0.00 0.00 3.01
1507 2282 1.578926 CGCGCAATCAAACCCAAGA 59.421 52.632 8.75 0.00 0.00 3.02
1508 2283 1.444212 CCGCGCAATCAAACCCAAG 60.444 57.895 8.75 0.00 0.00 3.61
1509 2284 2.196925 ACCGCGCAATCAAACCCAA 61.197 52.632 8.75 0.00 0.00 4.12
1510 2285 2.596046 ACCGCGCAATCAAACCCA 60.596 55.556 8.75 0.00 0.00 4.51
1511 2286 1.579084 TACACCGCGCAATCAAACCC 61.579 55.000 8.75 0.00 0.00 4.11
1523 2298 1.062002 CACCACGAATCAATACACCGC 59.938 52.381 0.00 0.00 0.00 5.68
2045 3006 3.716006 CTTGGTGGTCGCGCACAG 61.716 66.667 16.84 4.88 0.00 3.66
2095 3056 1.303643 GGAGGCCACTGGTTCCTTG 60.304 63.158 5.01 0.00 0.00 3.61
2161 3132 4.019321 ACCCACTGTAGCTTGATAACATGT 60.019 41.667 0.00 0.00 0.00 3.21
2225 3196 1.065199 TGAGATTCCACATGACCTGCC 60.065 52.381 0.00 0.00 0.00 4.85
2297 3268 5.279006 CGGCTCCTGAAAGTAATATGCTCTA 60.279 44.000 0.00 0.00 0.00 2.43
2373 3344 1.466856 TGCATTCAGTTCCTGCCATC 58.533 50.000 0.00 0.00 35.02 3.51
2475 3448 0.317770 CCAGCAAACGTTCGCATGTT 60.318 50.000 14.59 0.00 33.16 2.71
2478 3451 2.255252 GCCAGCAAACGTTCGCAT 59.745 55.556 14.59 0.00 0.00 4.73
2500 3475 3.733224 TGAAAAACGTTCGATTTGCCATG 59.267 39.130 0.00 0.00 0.00 3.66
2527 3502 7.639162 ATCGTTATCCTCGACAACATAAATC 57.361 36.000 0.00 0.00 40.07 2.17
2568 3543 1.534729 AGAACAGGCCGAATTTGTCC 58.465 50.000 0.00 0.00 0.00 4.02
2581 3556 8.502387 GCATAATCCTAGCAAAGAATAGAACAG 58.498 37.037 0.00 0.00 0.00 3.16
2604 3579 0.750546 ATGACGAGCAAGCATGGCAT 60.751 50.000 0.00 0.00 37.68 4.40
2656 7227 4.219115 TCTAGGAGAGCATCGGAAATCTT 58.781 43.478 0.00 0.00 42.67 2.40
2663 7235 3.742433 AACATTCTAGGAGAGCATCGG 57.258 47.619 0.00 0.00 42.67 4.18
2692 7267 4.671831 TGCCATGAACAAAGGGAAAGATA 58.328 39.130 0.00 0.00 0.00 1.98
2694 7269 2.956132 TGCCATGAACAAAGGGAAAGA 58.044 42.857 0.00 0.00 0.00 2.52
2723 7298 1.454847 GGAGGTGCCCACAACAACA 60.455 57.895 0.40 0.00 35.21 3.33
2752 7327 5.634439 CCACAAATTGATTCGCAATCTTTGA 59.366 36.000 18.93 5.07 46.25 2.69
2756 7331 4.789012 ACCACAAATTGATTCGCAATCT 57.211 36.364 0.00 0.00 46.25 2.40
2760 7335 3.317711 ACTCAACCACAAATTGATTCGCA 59.682 39.130 0.00 0.00 35.57 5.10
2761 7336 3.900941 ACTCAACCACAAATTGATTCGC 58.099 40.909 0.00 0.00 35.57 4.70
2762 7337 4.681025 CCAACTCAACCACAAATTGATTCG 59.319 41.667 0.00 0.00 35.57 3.34
2763 7338 5.600696 ACCAACTCAACCACAAATTGATTC 58.399 37.500 0.00 0.00 35.57 2.52
2764 7339 5.612725 ACCAACTCAACCACAAATTGATT 57.387 34.783 0.00 0.00 35.57 2.57
2765 7340 5.612725 AACCAACTCAACCACAAATTGAT 57.387 34.783 0.00 0.00 35.57 2.57
2766 7341 5.068460 CCTAACCAACTCAACCACAAATTGA 59.932 40.000 0.00 0.00 34.89 2.57
2767 7342 5.163457 ACCTAACCAACTCAACCACAAATTG 60.163 40.000 0.00 0.00 0.00 2.32
2768 7343 4.959839 ACCTAACCAACTCAACCACAAATT 59.040 37.500 0.00 0.00 0.00 1.82
2769 7344 4.340950 CACCTAACCAACTCAACCACAAAT 59.659 41.667 0.00 0.00 0.00 2.32
2770 7345 3.697045 CACCTAACCAACTCAACCACAAA 59.303 43.478 0.00 0.00 0.00 2.83
2771 7346 3.283751 CACCTAACCAACTCAACCACAA 58.716 45.455 0.00 0.00 0.00 3.33
2772 7347 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
2773 7348 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
2774 7349 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
2775 7350 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
2776 7351 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
2777 7352 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
2778 7353 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
2779 7354 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
2780 7355 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
2781 7356 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
2782 7357 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
2783 7358 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
2784 7359 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
2785 7360 3.105283 AGGATACCACTGTCCACCTAAC 58.895 50.000 0.00 0.00 36.96 2.34
2786 7361 3.245839 TGAGGATACCACTGTCCACCTAA 60.246 47.826 0.00 0.00 36.96 2.69
2787 7362 2.313643 TGAGGATACCACTGTCCACCTA 59.686 50.000 0.00 0.00 36.96 3.08
2788 7363 1.078823 TGAGGATACCACTGTCCACCT 59.921 52.381 0.00 0.00 36.96 4.00
2789 7364 1.568504 TGAGGATACCACTGTCCACC 58.431 55.000 0.00 0.00 36.96 4.61
2790 7365 2.354805 GGTTGAGGATACCACTGTCCAC 60.355 54.545 0.00 0.00 36.96 4.02
2791 7366 1.906574 GGTTGAGGATACCACTGTCCA 59.093 52.381 0.00 0.00 36.96 4.02
2792 7367 1.209747 GGGTTGAGGATACCACTGTCC 59.790 57.143 0.00 0.00 37.40 4.02
2793 7368 1.906574 TGGGTTGAGGATACCACTGTC 59.093 52.381 0.00 0.00 37.40 3.51
2794 7369 2.038863 TGGGTTGAGGATACCACTGT 57.961 50.000 0.00 0.00 37.40 3.55
2795 7370 2.505407 TGATGGGTTGAGGATACCACTG 59.495 50.000 0.00 0.00 37.40 3.66
2796 7371 2.774234 CTGATGGGTTGAGGATACCACT 59.226 50.000 0.00 0.00 37.40 4.00
2797 7372 2.158755 CCTGATGGGTTGAGGATACCAC 60.159 54.545 0.00 0.00 37.40 4.16
2798 7373 2.126882 CCTGATGGGTTGAGGATACCA 58.873 52.381 0.00 0.00 37.40 3.25
2799 7374 2.938956 CCTGATGGGTTGAGGATACC 57.061 55.000 0.00 0.00 34.82 2.73
2816 7391 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
2817 7392 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
2818 7393 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
2819 7394 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
2820 7395 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
2821 7396 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
2822 7397 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
2823 7398 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
2824 7399 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
2825 7400 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
2826 7401 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
2827 7402 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
2828 7403 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
2829 7404 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
2830 7405 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
2831 7406 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
2832 7407 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
2833 7408 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
2834 7409 9.831737 CTAAAATAAATCCAGGAATAATGCGAG 57.168 33.333 0.00 0.00 0.00 5.03
2835 7410 8.792633 CCTAAAATAAATCCAGGAATAATGCGA 58.207 33.333 0.00 0.00 0.00 5.10
2836 7411 8.792633 TCCTAAAATAAATCCAGGAATAATGCG 58.207 33.333 0.00 0.00 32.49 4.73
2842 7417 8.860088 CGGAAATCCTAAAATAAATCCAGGAAT 58.140 33.333 0.00 0.00 38.82 3.01
2843 7418 7.286775 CCGGAAATCCTAAAATAAATCCAGGAA 59.713 37.037 0.00 0.00 38.82 3.36
2844 7419 6.775629 CCGGAAATCCTAAAATAAATCCAGGA 59.224 38.462 0.00 0.00 39.63 3.86
2845 7420 6.516693 GCCGGAAATCCTAAAATAAATCCAGG 60.517 42.308 5.05 0.00 0.00 4.45
2846 7421 6.447162 GCCGGAAATCCTAAAATAAATCCAG 58.553 40.000 5.05 0.00 0.00 3.86
2847 7422 5.009210 CGCCGGAAATCCTAAAATAAATCCA 59.991 40.000 5.05 0.00 0.00 3.41
2848 7423 5.239963 TCGCCGGAAATCCTAAAATAAATCC 59.760 40.000 5.05 0.00 0.00 3.01
2849 7424 6.308371 TCGCCGGAAATCCTAAAATAAATC 57.692 37.500 5.05 0.00 0.00 2.17
2850 7425 6.894339 ATCGCCGGAAATCCTAAAATAAAT 57.106 33.333 5.05 0.00 0.00 1.40
2851 7426 6.073657 CGTATCGCCGGAAATCCTAAAATAAA 60.074 38.462 5.05 0.00 0.00 1.40
2852 7427 5.406175 CGTATCGCCGGAAATCCTAAAATAA 59.594 40.000 5.05 0.00 0.00 1.40
2853 7428 4.925054 CGTATCGCCGGAAATCCTAAAATA 59.075 41.667 5.05 0.00 0.00 1.40
2854 7429 3.744426 CGTATCGCCGGAAATCCTAAAAT 59.256 43.478 5.05 0.00 0.00 1.82
2855 7430 3.125316 CGTATCGCCGGAAATCCTAAAA 58.875 45.455 5.05 0.00 0.00 1.52
2856 7431 2.746269 CGTATCGCCGGAAATCCTAAA 58.254 47.619 5.05 0.00 0.00 1.85
2857 7432 2.427232 CGTATCGCCGGAAATCCTAA 57.573 50.000 5.05 0.00 0.00 2.69
2870 7445 1.560923 CTCCCACTGAAAGCGTATCG 58.439 55.000 0.00 0.00 37.60 2.92
2871 7446 1.480954 TCCTCCCACTGAAAGCGTATC 59.519 52.381 0.00 0.00 37.60 2.24
2872 7447 1.482593 CTCCTCCCACTGAAAGCGTAT 59.517 52.381 0.00 0.00 37.60 3.06
2873 7448 0.895530 CTCCTCCCACTGAAAGCGTA 59.104 55.000 0.00 0.00 37.60 4.42
2874 7449 0.832135 TCTCCTCCCACTGAAAGCGT 60.832 55.000 0.00 0.00 37.60 5.07
2875 7450 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
2876 7451 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
2877 7452 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
2878 7453 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
2879 7454 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
2880 7455 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
2881 7456 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
2882 7457 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
2886 7461 1.035932 TCGATGGGAACGTCTCCTCC 61.036 60.000 13.94 6.16 44.68 4.30
2887 7462 0.100861 GTCGATGGGAACGTCTCCTC 59.899 60.000 13.94 6.42 44.68 3.71
2888 7463 1.654954 CGTCGATGGGAACGTCTCCT 61.655 60.000 13.94 0.00 44.68 3.69
2889 7464 1.226603 CGTCGATGGGAACGTCTCC 60.227 63.158 0.00 7.90 44.51 3.71
2890 7465 0.381089 ATCGTCGATGGGAACGTCTC 59.619 55.000 7.00 0.00 44.51 3.36
2891 7466 0.100682 CATCGTCGATGGGAACGTCT 59.899 55.000 24.59 0.00 44.51 4.18
2892 7467 0.099968 TCATCGTCGATGGGAACGTC 59.900 55.000 29.72 0.00 40.15 4.34
2893 7468 0.100682 CTCATCGTCGATGGGAACGT 59.899 55.000 27.66 0.00 42.67 3.99
2894 7469 0.595053 CCTCATCGTCGATGGGAACG 60.595 60.000 32.02 14.77 42.67 3.95
2895 7470 0.876342 GCCTCATCGTCGATGGGAAC 60.876 60.000 32.02 20.90 42.67 3.62
2896 7471 1.441729 GCCTCATCGTCGATGGGAA 59.558 57.895 32.02 14.52 42.67 3.97
2897 7472 2.845550 CGCCTCATCGTCGATGGGA 61.846 63.158 32.02 15.19 42.67 4.37
2898 7473 2.355126 CGCCTCATCGTCGATGGG 60.355 66.667 29.72 27.61 39.99 4.00
2899 7474 3.032609 GCGCCTCATCGTCGATGG 61.033 66.667 29.72 21.05 40.15 3.51
2900 7475 2.130073 TAGGCGCCTCATCGTCGATG 62.130 60.000 36.73 25.98 41.00 3.84
2901 7476 1.897137 TAGGCGCCTCATCGTCGAT 60.897 57.895 36.73 7.63 39.34 3.59
2902 7477 2.515290 TAGGCGCCTCATCGTCGA 60.515 61.111 36.73 10.36 39.34 4.20
2903 7478 2.353607 GTAGGCGCCTCATCGTCG 60.354 66.667 36.73 0.00 39.34 5.12
2904 7479 2.353607 CGTAGGCGCCTCATCGTC 60.354 66.667 36.73 15.88 0.00 4.20
2905 7480 3.900892 CCGTAGGCGCCTCATCGT 61.901 66.667 36.73 11.27 46.14 3.73
2917 7492 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
2918 7493 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
2919 7494 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
2920 7495 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
2921 7496 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
2922 7497 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
2923 7498 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
2924 7499 8.920665 CCATATCATCTTGAGATTTACGAAGTC 58.079 37.037 0.00 0.00 35.39 3.01
2925 7500 7.386299 GCCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
2926 7501 7.411264 CGCCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
2927 7502 6.366061 CGCCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
2928 7503 5.863935 CGCCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
2929 7504 5.062683 CCGCCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
2930 7505 5.163814 GCCGCCATATCATCTTGAGATTTAC 60.164 44.000 0.00 0.00 31.21 2.01
2931 7506 4.937620 GCCGCCATATCATCTTGAGATTTA 59.062 41.667 0.00 0.00 31.21 1.40
2932 7507 3.755378 GCCGCCATATCATCTTGAGATTT 59.245 43.478 0.00 0.00 31.21 2.17
2933 7508 3.008813 AGCCGCCATATCATCTTGAGATT 59.991 43.478 0.00 0.00 31.21 2.40
2934 7509 2.570752 AGCCGCCATATCATCTTGAGAT 59.429 45.455 0.00 0.00 34.56 2.75
2935 7510 1.973515 AGCCGCCATATCATCTTGAGA 59.026 47.619 0.00 0.00 0.00 3.27
2936 7511 2.289257 TGAGCCGCCATATCATCTTGAG 60.289 50.000 0.00 0.00 0.00 3.02
2937 7512 1.693606 TGAGCCGCCATATCATCTTGA 59.306 47.619 0.00 0.00 0.00 3.02
2938 7513 2.074576 CTGAGCCGCCATATCATCTTG 58.925 52.381 0.00 0.00 0.00 3.02
2939 7514 1.696336 ACTGAGCCGCCATATCATCTT 59.304 47.619 0.00 0.00 0.00 2.40
2940 7515 1.274728 GACTGAGCCGCCATATCATCT 59.725 52.381 0.00 0.00 0.00 2.90
2941 7516 1.274728 AGACTGAGCCGCCATATCATC 59.725 52.381 0.00 0.00 0.00 2.92
2942 7517 1.274728 GAGACTGAGCCGCCATATCAT 59.725 52.381 0.00 0.00 0.00 2.45
2943 7518 0.676184 GAGACTGAGCCGCCATATCA 59.324 55.000 0.00 0.00 0.00 2.15
2944 7519 0.965439 AGAGACTGAGCCGCCATATC 59.035 55.000 0.00 0.00 0.00 1.63
2945 7520 0.965439 GAGAGACTGAGCCGCCATAT 59.035 55.000 0.00 0.00 0.00 1.78
2946 7521 1.448119 CGAGAGACTGAGCCGCCATA 61.448 60.000 0.00 0.00 0.00 2.74
2947 7522 2.780094 CGAGAGACTGAGCCGCCAT 61.780 63.158 0.00 0.00 0.00 4.40
2948 7523 3.443925 CGAGAGACTGAGCCGCCA 61.444 66.667 0.00 0.00 0.00 5.69
2949 7524 2.606155 CTTCGAGAGACTGAGCCGCC 62.606 65.000 0.00 0.00 41.84 6.13
2950 7525 1.226547 CTTCGAGAGACTGAGCCGC 60.227 63.158 0.00 0.00 41.84 6.53
2951 7526 1.021202 ATCTTCGAGAGACTGAGCCG 58.979 55.000 0.35 0.00 41.84 5.52
2952 7527 1.535860 GCATCTTCGAGAGACTGAGCC 60.536 57.143 0.35 0.00 41.84 4.70
2953 7528 1.405105 AGCATCTTCGAGAGACTGAGC 59.595 52.381 0.35 0.00 41.84 4.26
2954 7529 2.682352 TGAGCATCTTCGAGAGACTGAG 59.318 50.000 0.35 0.00 41.84 3.35
2955 7530 2.716217 TGAGCATCTTCGAGAGACTGA 58.284 47.619 0.35 0.00 41.84 3.41
2956 7531 3.066481 TGATGAGCATCTTCGAGAGACTG 59.934 47.826 11.37 2.81 41.75 3.51
2957 7532 3.286353 TGATGAGCATCTTCGAGAGACT 58.714 45.455 11.37 0.00 41.75 3.24
2958 7533 3.550639 CCTGATGAGCATCTTCGAGAGAC 60.551 52.174 11.37 0.00 41.75 3.36
2959 7534 2.622470 CCTGATGAGCATCTTCGAGAGA 59.378 50.000 11.37 0.79 41.75 3.10
2960 7535 2.288334 CCCTGATGAGCATCTTCGAGAG 60.288 54.545 11.37 0.29 41.75 3.20
2961 7536 1.685517 CCCTGATGAGCATCTTCGAGA 59.314 52.381 11.37 0.00 41.75 4.04
2962 7537 1.411977 ACCCTGATGAGCATCTTCGAG 59.588 52.381 11.37 1.25 41.75 4.04
2963 7538 1.489481 ACCCTGATGAGCATCTTCGA 58.511 50.000 11.37 0.00 41.75 3.71
2964 7539 3.459232 TTACCCTGATGAGCATCTTCG 57.541 47.619 11.37 1.99 41.75 3.79
2965 7540 4.574013 CACTTTACCCTGATGAGCATCTTC 59.426 45.833 11.37 0.00 39.52 2.87
2966 7541 4.018960 ACACTTTACCCTGATGAGCATCTT 60.019 41.667 11.37 0.00 38.60 2.40
2967 7542 3.521126 ACACTTTACCCTGATGAGCATCT 59.479 43.478 11.37 0.00 38.60 2.90
2968 7543 3.624861 CACACTTTACCCTGATGAGCATC 59.375 47.826 3.55 3.55 38.29 3.91
2969 7544 3.614092 CACACTTTACCCTGATGAGCAT 58.386 45.455 0.00 0.00 0.00 3.79
2970 7545 2.875672 GCACACTTTACCCTGATGAGCA 60.876 50.000 0.00 0.00 0.00 4.26
2971 7546 1.740025 GCACACTTTACCCTGATGAGC 59.260 52.381 0.00 0.00 0.00 4.26
2972 7547 2.002586 CGCACACTTTACCCTGATGAG 58.997 52.381 0.00 0.00 0.00 2.90
2973 7548 1.346395 ACGCACACTTTACCCTGATGA 59.654 47.619 0.00 0.00 0.00 2.92
2974 7549 1.464608 CACGCACACTTTACCCTGATG 59.535 52.381 0.00 0.00 0.00 3.07
2975 7550 1.071699 ACACGCACACTTTACCCTGAT 59.928 47.619 0.00 0.00 0.00 2.90
2976 7551 0.466543 ACACGCACACTTTACCCTGA 59.533 50.000 0.00 0.00 0.00 3.86
2977 7552 0.586319 CACACGCACACTTTACCCTG 59.414 55.000 0.00 0.00 0.00 4.45
2978 7553 0.179468 ACACACGCACACTTTACCCT 59.821 50.000 0.00 0.00 0.00 4.34
2979 7554 0.306533 CACACACGCACACTTTACCC 59.693 55.000 0.00 0.00 0.00 3.69
2980 7555 0.316689 GCACACACGCACACTTTACC 60.317 55.000 0.00 0.00 0.00 2.85
2981 7556 0.653323 CGCACACACGCACACTTTAC 60.653 55.000 0.00 0.00 0.00 2.01
2982 7557 1.084935 ACGCACACACGCACACTTTA 61.085 50.000 0.00 0.00 36.19 1.85
2983 7558 1.917782 AACGCACACACGCACACTTT 61.918 50.000 0.00 0.00 36.19 2.66
2984 7559 1.917782 AAACGCACACACGCACACTT 61.918 50.000 0.00 0.00 36.19 3.16
2985 7560 1.084935 TAAACGCACACACGCACACT 61.085 50.000 0.00 0.00 36.19 3.55
2986 7561 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
2987 7562 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
2988 7563 1.201877 CCTATAAACGCACACACGCAC 60.202 52.381 0.00 0.00 36.19 5.34
2989 7564 1.072391 CCTATAAACGCACACACGCA 58.928 50.000 0.00 0.00 36.19 5.24
2990 7565 0.372334 CCCTATAAACGCACACACGC 59.628 55.000 0.00 0.00 36.19 5.34
2991 7566 1.003851 CCCCTATAAACGCACACACG 58.996 55.000 0.00 0.00 39.50 4.49
2992 7567 1.735571 CACCCCTATAAACGCACACAC 59.264 52.381 0.00 0.00 0.00 3.82
2993 7568 1.624312 TCACCCCTATAAACGCACACA 59.376 47.619 0.00 0.00 0.00 3.72
2994 7569 2.277084 CTCACCCCTATAAACGCACAC 58.723 52.381 0.00 0.00 0.00 3.82
2995 7570 1.903860 ACTCACCCCTATAAACGCACA 59.096 47.619 0.00 0.00 0.00 4.57
2996 7571 2.277084 CACTCACCCCTATAAACGCAC 58.723 52.381 0.00 0.00 0.00 5.34
2997 7572 1.903860 ACACTCACCCCTATAAACGCA 59.096 47.619 0.00 0.00 0.00 5.24
2998 7573 2.685850 ACACTCACCCCTATAAACGC 57.314 50.000 0.00 0.00 0.00 4.84
2999 7574 4.056050 GCATACACTCACCCCTATAAACG 58.944 47.826 0.00 0.00 0.00 3.60
3000 7575 4.056050 CGCATACACTCACCCCTATAAAC 58.944 47.826 0.00 0.00 0.00 2.01
3001 7576 3.493699 GCGCATACACTCACCCCTATAAA 60.494 47.826 0.30 0.00 0.00 1.40
3002 7577 2.036733 GCGCATACACTCACCCCTATAA 59.963 50.000 0.30 0.00 0.00 0.98
3003 7578 1.616865 GCGCATACACTCACCCCTATA 59.383 52.381 0.30 0.00 0.00 1.31
3004 7579 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
3005 7580 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
3006 7581 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
3007 7582 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
3008 7583 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
3009 7584 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
3010 7585 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
3011 7586 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
3012 7587 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
3013 7588 3.004419 ACTCATATACACGCGCATACACT 59.996 43.478 5.73 0.00 0.00 3.55
3014 7589 3.119628 CACTCATATACACGCGCATACAC 59.880 47.826 5.73 0.00 0.00 2.90
3015 7590 3.305110 CACTCATATACACGCGCATACA 58.695 45.455 5.73 0.00 0.00 2.29
3016 7591 2.090658 GCACTCATATACACGCGCATAC 59.909 50.000 5.73 0.00 0.00 2.39
3017 7592 2.030274 AGCACTCATATACACGCGCATA 60.030 45.455 5.73 1.53 0.00 3.14
3018 7593 1.139989 GCACTCATATACACGCGCAT 58.860 50.000 5.73 0.00 0.00 4.73
3019 7594 0.102300 AGCACTCATATACACGCGCA 59.898 50.000 5.73 0.00 0.00 6.09
3020 7595 1.071239 CAAGCACTCATATACACGCGC 60.071 52.381 5.73 0.00 0.00 6.86
3021 7596 2.034591 CACAAGCACTCATATACACGCG 60.035 50.000 3.53 3.53 0.00 6.01
3022 7597 2.930040 ACACAAGCACTCATATACACGC 59.070 45.455 0.00 0.00 0.00 5.34
3023 7598 4.266265 CAGACACAAGCACTCATATACACG 59.734 45.833 0.00 0.00 0.00 4.49
3024 7599 5.171476 ACAGACACAAGCACTCATATACAC 58.829 41.667 0.00 0.00 0.00 2.90
3025 7600 5.405935 ACAGACACAAGCACTCATATACA 57.594 39.130 0.00 0.00 0.00 2.29
3026 7601 6.473778 CAGTACAGACACAAGCACTCATATAC 59.526 42.308 0.00 0.00 0.00 1.47
3027 7602 6.377146 TCAGTACAGACACAAGCACTCATATA 59.623 38.462 0.00 0.00 0.00 0.86
3028 7603 5.185828 TCAGTACAGACACAAGCACTCATAT 59.814 40.000 0.00 0.00 0.00 1.78
3029 7604 4.522789 TCAGTACAGACACAAGCACTCATA 59.477 41.667 0.00 0.00 0.00 2.15
3030 7605 3.321968 TCAGTACAGACACAAGCACTCAT 59.678 43.478 0.00 0.00 0.00 2.90
3031 7606 2.693074 TCAGTACAGACACAAGCACTCA 59.307 45.455 0.00 0.00 0.00 3.41
3032 7607 3.371102 TCAGTACAGACACAAGCACTC 57.629 47.619 0.00 0.00 0.00 3.51
3033 7608 3.657634 CATCAGTACAGACACAAGCACT 58.342 45.455 0.00 0.00 0.00 4.40
3034 7609 2.158449 GCATCAGTACAGACACAAGCAC 59.842 50.000 0.00 0.00 0.00 4.40
3035 7610 2.037641 AGCATCAGTACAGACACAAGCA 59.962 45.455 0.00 0.00 0.00 3.91
3036 7611 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
3037 7612 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.