Multiple sequence alignment - TraesCS2A01G289700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G289700 chr2A 100.000 7777 0 0 1 7777 498105339 498097563 0.000000e+00 14362.0
1 TraesCS2A01G289700 chr2A 88.000 150 15 3 7192 7339 418618398 418618250 2.880000e-39 174.0
2 TraesCS2A01G289700 chr2B 94.933 5092 175 33 767 5816 437007222 437002172 0.000000e+00 7897.0
3 TraesCS2A01G289700 chr2B 96.443 984 18 5 6219 7196 437002010 437001038 0.000000e+00 1607.0
4 TraesCS2A01G289700 chr2B 88.123 682 43 19 1 660 437007894 437007229 0.000000e+00 776.0
5 TraesCS2A01G289700 chr2B 97.714 175 3 1 5896 6070 437002172 437001999 4.560000e-77 300.0
6 TraesCS2A01G289700 chr2B 95.266 169 6 1 7337 7503 437001036 437000868 4.630000e-67 267.0
7 TraesCS2A01G289700 chr2B 98.020 101 2 0 7648 7748 715928013 715928113 8.020000e-40 176.0
8 TraesCS2A01G289700 chr2B 96.842 95 3 0 7654 7748 440223863 440223769 8.080000e-35 159.0
9 TraesCS2A01G289700 chr2B 85.950 121 5 5 6054 6162 754535733 754535853 1.370000e-22 119.0
10 TraesCS2A01G289700 chr2B 92.188 64 3 1 7550 7611 437000868 437000805 1.070000e-13 89.8
11 TraesCS2A01G289700 chr2D 96.108 4856 133 19 733 5563 368008784 368003960 0.000000e+00 7869.0
12 TraesCS2A01G289700 chr2D 97.305 705 17 1 6219 6921 368003348 368002644 0.000000e+00 1195.0
13 TraesCS2A01G289700 chr2D 97.406 694 15 2 1 691 368009901 368009208 0.000000e+00 1179.0
14 TraesCS2A01G289700 chr2D 98.833 257 2 1 5559 5814 368003765 368003509 2.560000e-124 457.0
15 TraesCS2A01G289700 chr2D 94.604 278 12 2 7337 7611 368002422 368002145 2.010000e-115 427.0
16 TraesCS2A01G289700 chr2D 95.238 231 7 3 6968 7196 368002652 368002424 5.740000e-96 363.0
17 TraesCS2A01G289700 chr2D 97.143 175 4 1 5896 6070 368003510 368003337 2.120000e-75 294.0
18 TraesCS2A01G289700 chr2D 97.826 92 2 0 5806 5897 53145818 53145727 8.080000e-35 159.0
19 TraesCS2A01G289700 chr2D 94.286 105 3 3 5800 5902 436111438 436111335 2.910000e-34 158.0
20 TraesCS2A01G289700 chr6B 100.000 156 0 0 6064 6219 217172078 217172233 9.870000e-74 289.0
21 TraesCS2A01G289700 chr6B 93.103 58 4 0 708 765 675195054 675195111 1.390000e-12 86.1
22 TraesCS2A01G289700 chr6B 93.878 49 2 1 659 706 408244949 408244997 1.080000e-08 73.1
23 TraesCS2A01G289700 chr4B 98.693 153 2 0 6066 6218 31525675 31525827 9.940000e-69 272.0
24 TraesCS2A01G289700 chr4B 96.000 100 4 0 7654 7753 658978260 658978359 6.240000e-36 163.0
25 TraesCS2A01G289700 chr4B 85.161 155 14 4 7192 7337 520910928 520910774 4.860000e-32 150.0
26 TraesCS2A01G289700 chr5B 96.774 155 2 3 6069 6222 124768697 124768849 1.000000e-63 255.0
27 TraesCS2A01G289700 chr5B 95.918 147 3 3 6073 6218 682935428 682935572 1.300000e-57 235.0
28 TraesCS2A01G289700 chr5B 83.439 157 15 8 7192 7338 556949077 556949232 1.360000e-27 135.0
29 TraesCS2A01G289700 chr5B 96.610 59 2 0 707 765 484883343 484883285 1.790000e-16 99.0
30 TraesCS2A01G289700 chr7B 97.945 146 3 0 6069 6214 231703709 231703854 3.600000e-63 254.0
31 TraesCS2A01G289700 chr7B 99.213 127 0 1 6092 6218 312342007 312342132 2.180000e-55 228.0
32 TraesCS2A01G289700 chr7B 94.915 59 3 0 707 765 428965871 428965929 8.310000e-15 93.5
33 TraesCS2A01G289700 chrUn 92.814 167 9 2 6057 6223 64148761 64148598 1.010000e-58 239.0
34 TraesCS2A01G289700 chrUn 92.593 54 4 0 712 765 96588271 96588324 2.330000e-10 78.7
35 TraesCS2A01G289700 chrUn 88.333 60 6 1 707 765 79941705 79941646 3.890000e-08 71.3
36 TraesCS2A01G289700 chrUn 89.474 57 5 1 709 765 257140492 257140547 3.890000e-08 71.3
37 TraesCS2A01G289700 chrUn 89.474 57 5 1 709 765 279873507 279873452 3.890000e-08 71.3
38 TraesCS2A01G289700 chrUn 89.091 55 6 0 711 765 108374549 108374495 1.400000e-07 69.4
39 TraesCS2A01G289700 chrUn 95.349 43 2 0 723 765 111041928 111041886 1.400000e-07 69.4
40 TraesCS2A01G289700 chrUn 86.441 59 8 0 707 765 110338074 110338132 1.810000e-06 65.8
41 TraesCS2A01G289700 chr4D 92.216 167 10 2 6057 6223 31546211 31546048 4.690000e-57 233.0
42 TraesCS2A01G289700 chr4D 83.439 157 17 7 7189 7337 116279911 116279756 3.780000e-28 137.0
43 TraesCS2A01G289700 chr4D 93.220 59 4 0 708 766 50156097 50156039 3.870000e-13 87.9
44 TraesCS2A01G289700 chr4D 93.220 59 1 1 707 765 9440967 9440912 5.000000e-12 84.2
45 TraesCS2A01G289700 chr4D 91.379 58 5 0 709 766 61847202 61847259 6.470000e-11 80.5
46 TraesCS2A01G289700 chr4D 94.118 51 2 1 716 765 440036004 440036054 8.370000e-10 76.8
47 TraesCS2A01G289700 chr4D 89.655 58 6 0 708 765 415913155 415913212 3.010000e-09 75.0
48 TraesCS2A01G289700 chr3A 91.975 162 5 4 6061 6218 32466762 32466919 3.650000e-53 220.0
49 TraesCS2A01G289700 chr3A 100.000 28 0 0 679 706 9520109 9520136 1.400000e-02 52.8
50 TraesCS2A01G289700 chr6D 88.742 151 13 3 7189 7338 363384357 363384210 1.720000e-41 182.0
51 TraesCS2A01G289700 chr6D 98.913 92 1 0 5807 5898 168293749 168293840 1.740000e-36 165.0
52 TraesCS2A01G289700 chr6D 96.809 94 2 1 5809 5902 85081780 85081872 1.040000e-33 156.0
53 TraesCS2A01G289700 chr6D 90.517 116 10 1 7644 7759 309588616 309588502 1.350000e-32 152.0
54 TraesCS2A01G289700 chr6D 94.915 59 3 0 707 765 357578380 357578322 8.310000e-15 93.5
55 TraesCS2A01G289700 chr6D 93.103 58 4 0 708 765 190909332 190909275 1.390000e-12 86.1
56 TraesCS2A01G289700 chr6D 96.078 51 2 0 724 774 57176723 57176673 5.000000e-12 84.2
57 TraesCS2A01G289700 chr6D 89.831 59 5 1 707 765 455448299 455448356 3.010000e-09 75.0
58 TraesCS2A01G289700 chr4A 87.838 148 15 3 7192 7337 544034845 544034699 3.730000e-38 171.0
59 TraesCS2A01G289700 chr4A 96.721 61 2 0 708 768 618462231 618462171 1.380000e-17 102.0
60 TraesCS2A01G289700 chr4A 96.610 59 2 0 707 765 594030131 594030189 1.790000e-16 99.0
61 TraesCS2A01G289700 chr1B 87.248 149 15 3 7192 7337 352890180 352890033 4.830000e-37 167.0
62 TraesCS2A01G289700 chr1B 95.146 103 5 0 7653 7755 61488855 61488957 6.240000e-36 163.0
63 TraesCS2A01G289700 chr1B 93.103 58 3 1 709 765 310360955 310360898 5.000000e-12 84.2
64 TraesCS2A01G289700 chr7A 96.939 98 3 0 7651 7748 68887572 68887669 1.740000e-36 165.0
65 TraesCS2A01G289700 chr7A 96.774 93 2 1 5806 5897 167268884 167268792 3.760000e-33 154.0
66 TraesCS2A01G289700 chr3D 96.040 101 4 0 7653 7753 462197413 462197513 1.740000e-36 165.0
67 TraesCS2A01G289700 chr3D 96.809 94 2 1 5813 5906 562693617 562693525 1.040000e-33 156.0
68 TraesCS2A01G289700 chr3D 93.333 60 3 1 708 766 418123376 418123435 3.870000e-13 87.9
69 TraesCS2A01G289700 chr7D 92.857 112 6 2 7654 7763 162222209 162222320 2.250000e-35 161.0
70 TraesCS2A01G289700 chr7D 94.898 98 5 0 5801 5898 41837775 41837678 3.760000e-33 154.0
71 TraesCS2A01G289700 chr7D 95.000 60 3 0 706 765 64533053 64533112 2.310000e-15 95.3
72 TraesCS2A01G289700 chr7D 93.220 59 4 0 707 765 83656271 83656213 3.870000e-13 87.9
73 TraesCS2A01G289700 chr7D 91.803 61 5 0 707 767 221683508 221683568 1.390000e-12 86.1
74 TraesCS2A01G289700 chr6A 93.396 106 7 0 7647 7752 600701855 600701750 2.910000e-34 158.0
75 TraesCS2A01G289700 chr6A 89.796 49 4 1 659 706 373119219 373119267 2.340000e-05 62.1
76 TraesCS2A01G289700 chr5A 95.876 97 4 0 5808 5904 390156982 390157078 2.910000e-34 158.0
77 TraesCS2A01G289700 chr5A 96.552 58 2 0 708 765 59700855 59700798 6.420000e-16 97.1
78 TraesCS2A01G289700 chr1D 93.069 101 6 1 5807 5906 115990014 115989914 6.290000e-31 147.0
79 TraesCS2A01G289700 chr1D 94.737 57 3 0 709 765 216718778 216718722 1.070000e-13 89.8
80 TraesCS2A01G289700 chr1D 89.831 59 6 0 708 766 403516103 403516045 8.370000e-10 76.8
81 TraesCS2A01G289700 chr1D 97.297 37 0 1 660 695 464299223 464299259 2.340000e-05 62.1
82 TraesCS2A01G289700 chr5D 85.714 140 12 4 7192 7329 324404772 324404905 2.930000e-29 141.0
83 TraesCS2A01G289700 chr5D 94.915 59 3 0 707 765 188826593 188826535 8.310000e-15 93.5
84 TraesCS2A01G289700 chr5D 93.220 59 4 0 707 765 554366934 554366992 3.870000e-13 87.9
85 TraesCS2A01G289700 chr3B 83.660 153 18 5 7192 7337 157762781 157762933 3.780000e-28 137.0
86 TraesCS2A01G289700 chr1A 93.443 61 3 1 707 766 45583236 45583296 1.070000e-13 89.8
87 TraesCS2A01G289700 chr1A 91.803 61 4 1 707 766 145890634 145890694 5.000000e-12 84.2
88 TraesCS2A01G289700 chr1A 92.982 57 4 0 709 765 277633096 277633040 5.000000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G289700 chr2A 498097563 498105339 7776 True 14362.000000 14362 100.000000 1 7777 1 chr2A.!!$R2 7776
1 TraesCS2A01G289700 chr2B 437000805 437007894 7089 True 1822.800000 7897 94.111167 1 7611 6 chr2B.!!$R2 7610
2 TraesCS2A01G289700 chr2D 368002145 368009901 7756 True 1683.428571 7869 96.662429 1 7611 7 chr2D.!!$R3 7610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 1299 0.240678 TGCATCGTGGCAATGTTGAC 59.759 50.000 0.0 0.0 41.65 3.18 F
1651 2095 0.172803 CGAAAGGGGTGACGAGGTAG 59.827 60.000 0.0 0.0 0.00 3.18 F
2346 2790 0.251354 ACAGATGCTGGAGTGCGAAT 59.749 50.000 0.0 0.0 35.51 3.34 F
2913 3359 2.637872 GGACATCCCCCGATTATTCAGA 59.362 50.000 0.0 0.0 0.00 3.27 F
4095 4541 0.946221 GTGCTCACTTGTAGCGTGCT 60.946 55.000 0.0 0.0 43.11 4.40 F
5068 5527 3.132824 GGACATTCATTTCCCATGTTCCC 59.867 47.826 0.0 0.0 31.10 3.97 F
6085 6743 2.226912 TCATTGTTTTTAAGGCGTCCCG 59.773 45.455 0.0 0.0 35.76 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2097 2541 0.178903 TAGGGTGGAGAAGCTGTGGT 60.179 55.0 0.00 0.00 0.00 4.16 R
3318 3764 2.801077 TCGATAGTGTCTGGTCAGGA 57.199 50.0 0.00 0.00 37.40 3.86 R
3657 4103 0.806868 ACAAAGCACATCAGGATGCG 59.193 50.0 9.12 1.15 46.74 4.73 R
4462 4908 0.704664 GTGGGGACTGGGGAGAAATT 59.295 55.0 0.00 0.00 0.00 1.82 R
5070 5529 0.919710 GCCACCCCACTAGGAAGATT 59.080 55.0 0.00 0.00 38.24 2.40 R
6119 6777 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.0 0.00 0.00 0.00 6.53 R
7735 8411 0.322546 AAATGTGCTCCCTCCGTTCC 60.323 55.0 0.00 0.00 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 163 1.929836 GCTCAAATCTGTACTCGGCAG 59.070 52.381 0.00 0.00 35.43 4.85
672 692 6.680872 GCTTGATTATATAGTACTCCCTCCGC 60.681 46.154 0.00 0.00 0.00 5.54
675 695 1.453633 TATAGTACTCCCTCCGCCCT 58.546 55.000 0.00 0.00 0.00 5.19
687 707 3.056035 CCCTCCGCCCTACAATATAAGAC 60.056 52.174 0.00 0.00 0.00 3.01
691 711 4.099881 TCCGCCCTACAATATAAGACGTTT 59.900 41.667 0.00 0.00 0.00 3.60
692 712 4.812626 CCGCCCTACAATATAAGACGTTTT 59.187 41.667 0.00 0.00 0.00 2.43
693 713 5.295045 CCGCCCTACAATATAAGACGTTTTT 59.705 40.000 0.00 0.00 0.00 1.94
694 714 6.189567 CGCCCTACAATATAAGACGTTTTTG 58.810 40.000 0.00 0.00 0.00 2.44
695 715 6.183360 CGCCCTACAATATAAGACGTTTTTGT 60.183 38.462 0.00 0.00 0.00 2.83
699 719 9.698617 CCTACAATATAAGACGTTTTTGTAAGC 57.301 33.333 0.00 0.00 31.40 3.09
709 729 6.018507 AGACGTTTTTGTAAGCTATGTTCGTT 60.019 34.615 0.00 0.00 0.00 3.85
710 730 6.488817 ACGTTTTTGTAAGCTATGTTCGTTT 58.511 32.000 0.00 0.00 0.00 3.60
711 731 6.968335 ACGTTTTTGTAAGCTATGTTCGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
712 732 7.485595 ACGTTTTTGTAAGCTATGTTCGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
714 734 8.588789 GTTTTTGTAAGCTATGTTCGTTTTTGT 58.411 29.630 0.00 0.00 0.00 2.83
715 735 9.784680 TTTTTGTAAGCTATGTTCGTTTTTGTA 57.215 25.926 0.00 0.00 0.00 2.41
716 736 9.784680 TTTTGTAAGCTATGTTCGTTTTTGTAA 57.215 25.926 0.00 0.00 0.00 2.41
719 739 5.941948 AGCTATGTTCGTTTTTGTAAGCT 57.058 34.783 0.00 0.00 33.16 3.74
720 740 7.429636 AAGCTATGTTCGTTTTTGTAAGCTA 57.570 32.000 0.00 0.00 36.82 3.32
721 741 7.429636 AGCTATGTTCGTTTTTGTAAGCTAA 57.570 32.000 0.00 0.00 36.10 3.09
722 742 7.295930 AGCTATGTTCGTTTTTGTAAGCTAAC 58.704 34.615 0.00 0.00 36.10 2.34
723 743 7.041644 AGCTATGTTCGTTTTTGTAAGCTAACA 60.042 33.333 0.00 0.00 35.64 2.41
724 744 7.749126 GCTATGTTCGTTTTTGTAAGCTAACAT 59.251 33.333 8.68 8.68 40.92 2.71
792 1194 8.942338 AAAGAAGTTTCATGTTTTAGTTTCCC 57.058 30.769 0.00 0.00 0.00 3.97
794 1196 5.801531 AGTTTCATGTTTTAGTTTCCCCC 57.198 39.130 0.00 0.00 0.00 5.40
795 1197 5.212745 AGTTTCATGTTTTAGTTTCCCCCA 58.787 37.500 0.00 0.00 0.00 4.96
825 1227 3.328382 TTCGTGGAAAGTGTATCTGGG 57.672 47.619 0.00 0.00 0.00 4.45
878 1280 2.694628 TCTCACAGCATTTTGCCTGTTT 59.305 40.909 0.00 0.00 46.52 2.83
879 1281 2.798283 CTCACAGCATTTTGCCTGTTTG 59.202 45.455 0.00 0.00 46.52 2.93
880 1282 1.262151 CACAGCATTTTGCCTGTTTGC 59.738 47.619 0.00 0.00 46.52 3.68
881 1283 1.134461 ACAGCATTTTGCCTGTTTGCA 60.134 42.857 0.00 0.00 46.52 4.08
882 1284 2.147958 CAGCATTTTGCCTGTTTGCAT 58.852 42.857 0.00 0.00 46.52 3.96
883 1285 2.158841 CAGCATTTTGCCTGTTTGCATC 59.841 45.455 0.00 0.00 46.52 3.91
884 1286 1.127213 GCATTTTGCCTGTTTGCATCG 59.873 47.619 0.00 0.00 41.70 3.84
897 1299 0.240678 TGCATCGTGGCAATGTTGAC 59.759 50.000 0.00 0.00 41.65 3.18
903 1305 2.550606 TCGTGGCAATGTTGACTTAACC 59.449 45.455 0.00 0.00 38.55 2.85
994 1396 2.241160 TGCACACGACTCCCTTAGTTA 58.759 47.619 0.00 0.00 39.07 2.24
1071 1499 0.393537 GGTGTTGGAGAGAGGGCATG 60.394 60.000 0.00 0.00 0.00 4.06
1216 1660 1.057851 TCACCCCTTCCAGTTCCGTT 61.058 55.000 0.00 0.00 0.00 4.44
1459 1903 1.279152 CGATCTTCTGCTCAGCACTG 58.721 55.000 0.00 0.00 33.79 3.66
1461 1905 0.392729 ATCTTCTGCTCAGCACTGCC 60.393 55.000 0.00 0.00 33.79 4.85
1491 1935 2.281761 CGCCTCACCCACTGCTTT 60.282 61.111 0.00 0.00 0.00 3.51
1645 2089 2.966309 GCTTGCGAAAGGGGTGACG 61.966 63.158 5.02 0.00 0.00 4.35
1651 2095 0.172803 CGAAAGGGGTGACGAGGTAG 59.827 60.000 0.00 0.00 0.00 3.18
1719 2163 1.103987 AGCGGCTAAGAGCGATCTCA 61.104 55.000 2.43 0.00 43.62 3.27
1735 2179 0.260230 CTCAGAGAGCCAGGACCCTA 59.740 60.000 0.00 0.00 0.00 3.53
1753 2197 6.007485 ACCCTATTTCTTTCTTGAGGGATC 57.993 41.667 11.70 0.00 45.65 3.36
1759 2203 2.305927 TCTTTCTTGAGGGATCCACACC 59.694 50.000 15.23 0.00 0.00 4.16
1770 2214 4.041917 CCACACCGTGCACATGCC 62.042 66.667 18.64 0.00 41.18 4.40
1799 2243 0.251832 AAAGCGAGAGGAGAGGGTGA 60.252 55.000 0.00 0.00 0.00 4.02
1809 2253 4.785376 AGAGGAGAGGGTGATTTATTGTGT 59.215 41.667 0.00 0.00 0.00 3.72
1814 2258 3.947834 GAGGGTGATTTATTGTGTCAGGG 59.052 47.826 0.00 0.00 0.00 4.45
1815 2259 2.427095 GGGTGATTTATTGTGTCAGGGC 59.573 50.000 0.00 0.00 0.00 5.19
1822 2266 2.307496 ATTGTGTCAGGGCAATCCAA 57.693 45.000 0.00 0.00 38.24 3.53
1831 2275 4.706962 GTCAGGGCAATCCAATTAACTCTT 59.293 41.667 0.00 0.00 38.24 2.85
1842 2286 6.476378 TCCAATTAACTCTTTTCCTCAGGAG 58.524 40.000 0.00 0.00 31.21 3.69
1883 2327 5.125100 TGCAATTCTGATCAAAACAGACC 57.875 39.130 0.00 0.00 42.84 3.85
1924 2368 6.422701 TGTTACAAACGAAGATACTGTTCAGG 59.577 38.462 4.82 0.00 0.00 3.86
1968 2412 2.681848 CAGCAATGTAGAGCTCAAAGGG 59.318 50.000 17.77 1.69 39.50 3.95
2049 2493 0.832135 TCTTCCTGAACCGCCTCACT 60.832 55.000 0.00 0.00 0.00 3.41
2097 2541 1.691976 CAACACAGTGGAGTGACCCTA 59.308 52.381 5.31 0.00 42.05 3.53
2151 2595 3.040099 GCGAGTGTTTATTGCAACGTTT 58.960 40.909 0.00 0.00 0.00 3.60
2172 2616 1.271597 ACCTCTGACATTTCCTGGTGC 60.272 52.381 0.00 0.00 0.00 5.01
2196 2640 4.067896 TGCTCTCTCCACTGTTGAATTTC 58.932 43.478 0.00 0.00 0.00 2.17
2346 2790 0.251354 ACAGATGCTGGAGTGCGAAT 59.749 50.000 0.00 0.00 35.51 3.34
2366 2810 6.183360 GCGAATAGTGAAAATAGAACTGCAGT 60.183 38.462 15.25 15.25 0.00 4.40
2409 2853 8.258708 CCTAATTTACTTCTAGTGTAAGTGGCT 58.741 37.037 5.74 0.00 37.71 4.75
2525 2970 6.763610 AGTATTTGCTGAGCTTTATGGTAGAC 59.236 38.462 5.83 0.00 0.00 2.59
2752 3197 4.866508 CCTAGACAGGTCAGTGTTACAA 57.133 45.455 1.84 0.00 37.15 2.41
2767 3212 7.122501 TCAGTGTTACAATTCATGCCATAATGT 59.877 33.333 0.00 0.00 0.00 2.71
2779 3224 6.604396 TCATGCCATAATGTCTTGTCTTGAAT 59.396 34.615 0.00 0.00 0.00 2.57
2785 3230 9.918630 CCATAATGTCTTGTCTTGAATTCTTTT 57.081 29.630 7.05 0.00 0.00 2.27
2827 3273 4.393062 TGTTGCTATGCTCTTACTGAAAGC 59.607 41.667 0.00 0.00 37.60 3.51
2913 3359 2.637872 GGACATCCCCCGATTATTCAGA 59.362 50.000 0.00 0.00 0.00 3.27
2950 3396 4.261801 TCGAGGGACCAAAATCTGATTTC 58.738 43.478 15.43 3.96 0.00 2.17
3028 3474 7.783090 AGCATATTGGATAAATGAGATAGCG 57.217 36.000 0.00 0.00 0.00 4.26
3657 4103 6.842780 GTGTAACTTTTACTGCACGTTAACTC 59.157 38.462 3.71 0.00 0.00 3.01
4052 4498 6.042437 AGTTTTCTCAAATTTCAGGGCTGATT 59.958 34.615 0.00 0.00 39.64 2.57
4085 4531 2.373169 TCTCCCTTCATTGTGCTCACTT 59.627 45.455 1.47 0.00 0.00 3.16
4095 4541 0.946221 GTGCTCACTTGTAGCGTGCT 60.946 55.000 0.00 0.00 43.11 4.40
4319 4765 4.868171 TCTTCCATTCTTCGGTTTCATACG 59.132 41.667 0.00 0.00 0.00 3.06
4541 4999 9.032624 TGTTAGTTCTTAAATAGCCTGACTAGT 57.967 33.333 0.00 0.00 33.29 2.57
4662 5121 6.270231 AGTGACTGTCTAAGTTAATCCCTTGT 59.730 38.462 9.51 0.00 40.07 3.16
4693 5152 8.322828 TGCTATGTTTAGTAACCCATTGTCTTA 58.677 33.333 0.83 0.00 33.15 2.10
4833 5292 9.162733 AGCCAATCATCTTAATATGGGATTTTT 57.837 29.630 1.41 0.00 0.00 1.94
5003 5462 7.789349 AGGTAATATTTAATTGCCCCATGAACT 59.211 33.333 0.00 0.00 34.84 3.01
5042 5501 7.396540 ACTTCCTGGCTTTTTACTCATTATG 57.603 36.000 0.00 0.00 0.00 1.90
5068 5527 3.132824 GGACATTCATTTCCCATGTTCCC 59.867 47.826 0.00 0.00 31.10 3.97
5070 5529 3.106054 CATTCATTTCCCATGTTCCCCA 58.894 45.455 0.00 0.00 0.00 4.96
5231 5690 7.661040 TGAGGTTGATTTCTCTTTCCAAAATC 58.339 34.615 0.00 0.00 39.01 2.17
5297 5756 7.703621 CACATTCACATCATATTTGAAGTTCCC 59.296 37.037 0.00 0.00 31.69 3.97
5399 5858 4.458989 ACAATGAAATAGGCGACACACATT 59.541 37.500 0.00 0.00 0.00 2.71
5472 5931 5.230182 TCCTTGTATAGCAGATACATTGCG 58.770 41.667 11.10 3.20 45.98 4.85
5808 6466 5.837438 GGGAGGATGATGATTCAAGGAAAAT 59.163 40.000 0.00 0.00 34.96 1.82
5809 6467 6.325804 GGGAGGATGATGATTCAAGGAAAATT 59.674 38.462 0.00 0.00 34.96 1.82
5810 6468 7.506938 GGGAGGATGATGATTCAAGGAAAATTA 59.493 37.037 0.00 0.00 34.96 1.40
5811 6469 9.086758 GGAGGATGATGATTCAAGGAAAATTAT 57.913 33.333 0.00 0.00 34.96 1.28
5819 6477 9.942526 ATGATTCAAGGAAAATTATTACTCCCT 57.057 29.630 0.00 0.00 0.00 4.20
5820 6478 9.408648 TGATTCAAGGAAAATTATTACTCCCTC 57.591 33.333 3.27 0.00 0.00 4.30
5821 6479 8.768501 ATTCAAGGAAAATTATTACTCCCTCC 57.231 34.615 3.27 0.00 0.00 4.30
5822 6480 6.354130 TCAAGGAAAATTATTACTCCCTCCG 58.646 40.000 3.27 0.00 0.00 4.63
5823 6481 5.970501 AGGAAAATTATTACTCCCTCCGT 57.029 39.130 3.27 0.00 0.00 4.69
5824 6482 5.926663 AGGAAAATTATTACTCCCTCCGTC 58.073 41.667 3.27 0.00 0.00 4.79
5825 6483 5.061853 GGAAAATTATTACTCCCTCCGTCC 58.938 45.833 0.00 0.00 0.00 4.79
5826 6484 4.701651 AAATTATTACTCCCTCCGTCCC 57.298 45.455 0.00 0.00 0.00 4.46
5827 6485 2.852714 TTATTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
5828 6486 3.339713 TTATTACTCCCTCCGTCCCAT 57.660 47.619 0.00 0.00 0.00 4.00
5829 6487 4.474303 TTATTACTCCCTCCGTCCCATA 57.526 45.455 0.00 0.00 0.00 2.74
5830 6488 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
5831 6489 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
5832 6490 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
5833 6491 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5834 6492 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
5835 6493 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
5836 6494 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
5837 6495 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
5838 6496 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
5839 6497 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
5840 6498 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
5841 6499 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
5842 6500 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
5843 6501 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
5844 6502 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
5845 6503 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
5846 6504 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
5847 6505 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
5848 6506 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
5849 6507 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
5850 6508 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
5851 6509 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
5854 6512 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
5855 6513 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
5857 6515 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
5858 6516 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
5859 6517 4.690122 AGCGTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 6.32 45.05 2.73
5887 6545 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
5888 6546 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
5889 6547 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
5890 6548 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
5891 6549 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
5892 6550 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
5893 6551 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
5894 6552 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
5924 6582 6.612247 ACAATGCGATTTAATGGATAACGA 57.388 33.333 0.00 0.00 0.00 3.85
5951 6609 7.661027 GGGAAAGGAATTCACAATGATGAAAAA 59.339 33.333 7.93 0.00 41.38 1.94
6057 6715 4.331968 TGTTGCTAACTAATGAACCCCAG 58.668 43.478 0.00 0.00 0.00 4.45
6058 6716 4.202524 TGTTGCTAACTAATGAACCCCAGT 60.203 41.667 0.00 0.00 0.00 4.00
6059 6717 4.650972 TGCTAACTAATGAACCCCAGTT 57.349 40.909 0.00 0.00 39.54 3.16
6060 6718 5.765576 TGCTAACTAATGAACCCCAGTTA 57.234 39.130 0.00 0.00 35.94 2.24
6061 6719 5.493809 TGCTAACTAATGAACCCCAGTTAC 58.506 41.667 0.00 0.00 35.94 2.50
6062 6720 5.013287 TGCTAACTAATGAACCCCAGTTACA 59.987 40.000 0.00 0.00 35.94 2.41
6063 6721 5.941647 GCTAACTAATGAACCCCAGTTACAA 59.058 40.000 0.00 0.00 35.94 2.41
6064 6722 6.602009 GCTAACTAATGAACCCCAGTTACAAT 59.398 38.462 0.00 0.00 35.94 2.71
6065 6723 7.201705 GCTAACTAATGAACCCCAGTTACAATC 60.202 40.741 0.00 0.00 35.94 2.67
6066 6724 6.134535 ACTAATGAACCCCAGTTACAATCA 57.865 37.500 0.00 0.00 35.94 2.57
6067 6725 6.731467 ACTAATGAACCCCAGTTACAATCAT 58.269 36.000 0.00 0.00 35.94 2.45
6068 6726 7.182060 ACTAATGAACCCCAGTTACAATCATT 58.818 34.615 0.00 0.00 35.94 2.57
6069 6727 5.920193 ATGAACCCCAGTTACAATCATTG 57.080 39.130 0.00 0.00 35.94 2.82
6071 6729 5.144100 TGAACCCCAGTTACAATCATTGTT 58.856 37.500 8.69 0.00 44.76 2.83
6072 6730 5.600484 TGAACCCCAGTTACAATCATTGTTT 59.400 36.000 8.69 0.00 44.76 2.83
6073 6731 6.098982 TGAACCCCAGTTACAATCATTGTTTT 59.901 34.615 8.69 0.00 44.76 2.43
6074 6732 6.493189 ACCCCAGTTACAATCATTGTTTTT 57.507 33.333 8.69 0.00 42.22 1.94
6075 6733 7.604657 ACCCCAGTTACAATCATTGTTTTTA 57.395 32.000 8.69 0.00 42.22 1.52
6076 6734 8.024145 ACCCCAGTTACAATCATTGTTTTTAA 57.976 30.769 8.69 0.00 42.22 1.52
6077 6735 8.147704 ACCCCAGTTACAATCATTGTTTTTAAG 58.852 33.333 8.69 0.00 42.22 1.85
6078 6736 7.602265 CCCCAGTTACAATCATTGTTTTTAAGG 59.398 37.037 8.69 3.56 42.22 2.69
6079 6737 7.117667 CCCAGTTACAATCATTGTTTTTAAGGC 59.882 37.037 8.69 0.00 42.22 4.35
6080 6738 7.148820 CCAGTTACAATCATTGTTTTTAAGGCG 60.149 37.037 8.69 0.00 42.22 5.52
6081 6739 7.381139 CAGTTACAATCATTGTTTTTAAGGCGT 59.619 33.333 8.69 0.00 42.22 5.68
6082 6740 7.593644 AGTTACAATCATTGTTTTTAAGGCGTC 59.406 33.333 8.69 0.00 42.22 5.19
6083 6741 5.227152 ACAATCATTGTTTTTAAGGCGTCC 58.773 37.500 0.00 0.00 42.22 4.79
6084 6742 3.926821 TCATTGTTTTTAAGGCGTCCC 57.073 42.857 0.00 0.00 0.00 4.46
6085 6743 2.226912 TCATTGTTTTTAAGGCGTCCCG 59.773 45.455 0.00 0.00 35.76 5.14
6097 6755 4.699522 GTCCCGCCTTGGACGCTT 62.700 66.667 0.00 0.00 44.98 4.68
6098 6756 2.998480 TCCCGCCTTGGACGCTTA 60.998 61.111 0.00 0.00 42.00 3.09
6099 6757 2.511600 CCCGCCTTGGACGCTTAG 60.512 66.667 0.00 0.00 42.00 2.18
6100 6758 2.511600 CCGCCTTGGACGCTTAGG 60.512 66.667 0.00 0.00 42.00 2.69
6130 6788 2.034999 CCCCCAGCGCCTTACAAA 59.965 61.111 2.29 0.00 0.00 2.83
6131 6789 1.379843 CCCCCAGCGCCTTACAAAT 60.380 57.895 2.29 0.00 0.00 2.32
6132 6790 0.106918 CCCCCAGCGCCTTACAAATA 60.107 55.000 2.29 0.00 0.00 1.40
6133 6791 1.478654 CCCCCAGCGCCTTACAAATAT 60.479 52.381 2.29 0.00 0.00 1.28
6134 6792 1.608590 CCCCAGCGCCTTACAAATATG 59.391 52.381 2.29 0.00 0.00 1.78
6135 6793 1.001378 CCCAGCGCCTTACAAATATGC 60.001 52.381 2.29 0.00 0.00 3.14
6136 6794 1.001378 CCAGCGCCTTACAAATATGCC 60.001 52.381 2.29 0.00 0.00 4.40
6137 6795 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
6138 6796 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
6139 6797 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
6140 6798 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
6141 6799 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
6142 6800 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
6143 6801 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
6144 6802 3.502211 CCTTACAAATATGCCCGCCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
6145 6803 1.981256 ACAAATATGCCCGCCTTAGG 58.019 50.000 0.00 0.00 0.00 2.69
6194 6852 4.176752 CCCCCAGCGCCTTAGGTC 62.177 72.222 2.29 0.00 0.00 3.85
6195 6853 4.530857 CCCCAGCGCCTTAGGTCG 62.531 72.222 2.29 9.97 0.00 4.79
6198 6856 4.148825 CAGCGCCTTAGGTCGCCT 62.149 66.667 26.94 16.35 44.56 5.52
6199 6857 3.391382 AGCGCCTTAGGTCGCCTT 61.391 61.111 26.94 13.59 44.56 4.35
6200 6858 2.056223 AGCGCCTTAGGTCGCCTTA 61.056 57.895 26.94 0.00 44.56 2.69
6201 6859 1.881709 GCGCCTTAGGTCGCCTTAC 60.882 63.158 22.66 2.55 40.38 2.34
6202 6860 1.227176 CGCCTTAGGTCGCCTTACC 60.227 63.158 0.00 0.00 40.06 2.85
6203 6861 1.227176 GCCTTAGGTCGCCTTACCG 60.227 63.158 0.00 0.00 44.77 4.02
6204 6862 1.227176 CCTTAGGTCGCCTTACCGC 60.227 63.158 3.71 0.00 44.77 5.68
6205 6863 1.227176 CTTAGGTCGCCTTACCGCC 60.227 63.158 3.71 0.00 44.77 6.13
6206 6864 1.673808 CTTAGGTCGCCTTACCGCCT 61.674 60.000 3.71 0.00 44.77 5.52
6207 6865 1.259840 TTAGGTCGCCTTACCGCCTT 61.260 55.000 3.71 0.00 44.77 4.35
6208 6866 0.395586 TAGGTCGCCTTACCGCCTTA 60.396 55.000 3.71 0.00 44.77 2.69
6209 6867 1.218854 GGTCGCCTTACCGCCTTAA 59.781 57.895 0.00 0.00 0.00 1.85
6210 6868 0.391528 GGTCGCCTTACCGCCTTAAA 60.392 55.000 0.00 0.00 0.00 1.52
6211 6869 1.441738 GTCGCCTTACCGCCTTAAAA 58.558 50.000 0.00 0.00 0.00 1.52
6212 6870 1.805943 GTCGCCTTACCGCCTTAAAAA 59.194 47.619 0.00 0.00 0.00 1.94
6213 6871 1.805943 TCGCCTTACCGCCTTAAAAAC 59.194 47.619 0.00 0.00 0.00 2.43
6214 6872 1.808343 CGCCTTACCGCCTTAAAAACT 59.192 47.619 0.00 0.00 0.00 2.66
6215 6873 3.002102 CGCCTTACCGCCTTAAAAACTA 58.998 45.455 0.00 0.00 0.00 2.24
6216 6874 3.624410 CGCCTTACCGCCTTAAAAACTAT 59.376 43.478 0.00 0.00 0.00 2.12
6217 6875 4.495184 CGCCTTACCGCCTTAAAAACTATG 60.495 45.833 0.00 0.00 0.00 2.23
6457 7115 0.184451 ATCATTCTCATTGCCCCGCT 59.816 50.000 0.00 0.00 0.00 5.52
6560 7218 4.957684 ATACAAGTACAGTGATAGGCCC 57.042 45.455 0.00 0.00 0.00 5.80
6659 7317 6.894654 ACGAGGATATACCAGATGAAGATGAT 59.105 38.462 0.00 0.00 42.04 2.45
6674 7332 3.542648 AGATGATGAGCATGTGGTTGAG 58.457 45.455 0.00 0.00 37.34 3.02
6710 7368 4.901849 TGTCCTGAAGAGAAAGAAGAGGAA 59.098 41.667 0.00 0.00 30.04 3.36
6752 7410 1.575447 GGGGGCAGGTGGATTCTTCT 61.575 60.000 0.00 0.00 0.00 2.85
6799 7457 2.350514 GAGGCTGGCTCTGCAGTT 59.649 61.111 22.52 0.00 0.00 3.16
6837 7497 8.373981 ACAGACCAGATATTCATTGGATAAGAG 58.626 37.037 0.00 0.00 35.89 2.85
7060 7727 7.893124 AAGGATTGTAGATGATTCAATTGCT 57.107 32.000 0.00 0.00 32.90 3.91
7061 7728 7.893124 AGGATTGTAGATGATTCAATTGCTT 57.107 32.000 0.00 0.00 32.90 3.91
7062 7729 8.302515 AGGATTGTAGATGATTCAATTGCTTT 57.697 30.769 0.00 0.00 32.90 3.51
7063 7730 8.755977 AGGATTGTAGATGATTCAATTGCTTTT 58.244 29.630 0.00 0.00 32.90 2.27
7064 7731 9.374838 GGATTGTAGATGATTCAATTGCTTTTT 57.625 29.630 0.00 0.00 32.90 1.94
7102 7773 7.094420 TGTGTGGTGTATCTTGTCATTTATTGG 60.094 37.037 0.00 0.00 0.00 3.16
7196 7867 7.924103 ACATTGGAACGAAATGTTTTACTTC 57.076 32.000 0.00 0.00 43.94 3.01
7197 7868 6.921307 ACATTGGAACGAAATGTTTTACTTCC 59.079 34.615 0.00 0.00 43.94 3.46
7198 7869 6.702716 TTGGAACGAAATGTTTTACTTCCT 57.297 33.333 0.00 0.00 42.09 3.36
7199 7870 6.308371 TGGAACGAAATGTTTTACTTCCTC 57.692 37.500 0.00 0.00 42.09 3.71
7200 7871 6.059484 TGGAACGAAATGTTTTACTTCCTCT 58.941 36.000 0.00 0.00 42.09 3.69
7201 7872 6.017440 TGGAACGAAATGTTTTACTTCCTCTG 60.017 38.462 0.00 0.00 42.09 3.35
7202 7873 6.017357 GGAACGAAATGTTTTACTTCCTCTGT 60.017 38.462 0.00 0.00 42.09 3.41
7203 7874 6.937436 ACGAAATGTTTTACTTCCTCTGTT 57.063 33.333 0.00 0.00 0.00 3.16
7204 7875 6.956047 ACGAAATGTTTTACTTCCTCTGTTC 58.044 36.000 0.00 0.00 0.00 3.18
7205 7876 6.017357 ACGAAATGTTTTACTTCCTCTGTTCC 60.017 38.462 0.00 0.00 0.00 3.62
7206 7877 6.204882 CGAAATGTTTTACTTCCTCTGTTCCT 59.795 38.462 0.00 0.00 0.00 3.36
7207 7878 7.386848 CGAAATGTTTTACTTCCTCTGTTCCTA 59.613 37.037 0.00 0.00 0.00 2.94
7208 7879 8.990163 AAATGTTTTACTTCCTCTGTTCCTAA 57.010 30.769 0.00 0.00 0.00 2.69
7209 7880 8.990163 AATGTTTTACTTCCTCTGTTCCTAAA 57.010 30.769 0.00 0.00 0.00 1.85
7210 7881 9.588096 AATGTTTTACTTCCTCTGTTCCTAAAT 57.412 29.630 0.00 0.00 0.00 1.40
7237 7908 7.554959 AGGTCTTTTTAGAGATTCCACTACA 57.445 36.000 0.00 0.00 0.00 2.74
7238 7909 7.974504 AGGTCTTTTTAGAGATTCCACTACAA 58.025 34.615 0.00 0.00 0.00 2.41
7239 7910 8.437575 AGGTCTTTTTAGAGATTCCACTACAAA 58.562 33.333 0.00 0.00 0.00 2.83
7240 7911 8.504815 GGTCTTTTTAGAGATTCCACTACAAAC 58.495 37.037 0.00 0.00 0.00 2.93
7241 7912 9.274206 GTCTTTTTAGAGATTCCACTACAAACT 57.726 33.333 0.00 0.00 0.00 2.66
7245 7916 9.485206 TTTTAGAGATTCCACTACAAACTACAC 57.515 33.333 0.00 0.00 0.00 2.90
7246 7917 5.710984 AGAGATTCCACTACAAACTACACG 58.289 41.667 0.00 0.00 0.00 4.49
7247 7918 5.243283 AGAGATTCCACTACAAACTACACGT 59.757 40.000 0.00 0.00 0.00 4.49
7248 7919 6.432162 AGAGATTCCACTACAAACTACACGTA 59.568 38.462 0.00 0.00 0.00 3.57
7249 7920 7.122353 AGAGATTCCACTACAAACTACACGTAT 59.878 37.037 0.00 0.00 0.00 3.06
7250 7921 8.284945 AGATTCCACTACAAACTACACGTATA 57.715 34.615 0.00 0.00 0.00 1.47
7251 7922 8.910944 AGATTCCACTACAAACTACACGTATAT 58.089 33.333 0.00 0.00 0.00 0.86
7254 7925 8.962884 TCCACTACAAACTACACGTATATAGA 57.037 34.615 7.47 0.00 0.00 1.98
7255 7926 8.830580 TCCACTACAAACTACACGTATATAGAC 58.169 37.037 7.47 0.00 0.00 2.59
7256 7927 8.615211 CCACTACAAACTACACGTATATAGACA 58.385 37.037 7.47 0.00 0.00 3.41
7276 7947 7.470289 AGACATATAGATTCACTCGTTTTGC 57.530 36.000 0.00 0.00 0.00 3.68
7277 7948 7.268586 AGACATATAGATTCACTCGTTTTGCT 58.731 34.615 0.00 0.00 0.00 3.91
7278 7949 7.436673 AGACATATAGATTCACTCGTTTTGCTC 59.563 37.037 0.00 0.00 0.00 4.26
7279 7950 6.480320 ACATATAGATTCACTCGTTTTGCTCC 59.520 38.462 0.00 0.00 0.00 4.70
7280 7951 2.069273 AGATTCACTCGTTTTGCTCCG 58.931 47.619 0.00 0.00 0.00 4.63
7281 7952 1.798813 GATTCACTCGTTTTGCTCCGT 59.201 47.619 0.00 0.00 0.00 4.69
7282 7953 2.512485 TTCACTCGTTTTGCTCCGTA 57.488 45.000 0.00 0.00 0.00 4.02
7283 7954 2.736144 TCACTCGTTTTGCTCCGTAT 57.264 45.000 0.00 0.00 0.00 3.06
7284 7955 2.602878 TCACTCGTTTTGCTCCGTATC 58.397 47.619 0.00 0.00 0.00 2.24
7285 7956 2.230508 TCACTCGTTTTGCTCCGTATCT 59.769 45.455 0.00 0.00 0.00 1.98
7286 7957 3.441222 TCACTCGTTTTGCTCCGTATCTA 59.559 43.478 0.00 0.00 0.00 1.98
7287 7958 3.791887 CACTCGTTTTGCTCCGTATCTAG 59.208 47.826 0.00 0.00 0.00 2.43
7288 7959 3.442977 ACTCGTTTTGCTCCGTATCTAGT 59.557 43.478 0.00 0.00 0.00 2.57
7289 7960 4.025015 TCGTTTTGCTCCGTATCTAGTC 57.975 45.455 0.00 0.00 0.00 2.59
7290 7961 3.114065 CGTTTTGCTCCGTATCTAGTCC 58.886 50.000 0.00 0.00 0.00 3.85
7291 7962 3.428452 CGTTTTGCTCCGTATCTAGTCCA 60.428 47.826 0.00 0.00 0.00 4.02
7292 7963 4.694339 GTTTTGCTCCGTATCTAGTCCAT 58.306 43.478 0.00 0.00 0.00 3.41
7293 7964 5.506815 CGTTTTGCTCCGTATCTAGTCCATA 60.507 44.000 0.00 0.00 0.00 2.74
7294 7965 5.707242 TTTGCTCCGTATCTAGTCCATAG 57.293 43.478 0.00 0.00 0.00 2.23
7295 7966 4.368565 TGCTCCGTATCTAGTCCATAGT 57.631 45.455 0.00 0.00 32.85 2.12
7296 7967 4.072839 TGCTCCGTATCTAGTCCATAGTG 58.927 47.826 0.00 0.00 32.85 2.74
7297 7968 3.440872 GCTCCGTATCTAGTCCATAGTGG 59.559 52.174 0.00 0.00 39.43 4.00
7298 7969 4.806625 GCTCCGTATCTAGTCCATAGTGGA 60.807 50.000 0.00 0.00 45.98 4.02
7313 7984 8.380742 TCCATAGTGGAATCTCTAAAAAGACT 57.619 34.615 0.00 0.00 45.00 3.24
7314 7985 8.826765 TCCATAGTGGAATCTCTAAAAAGACTT 58.173 33.333 0.00 0.00 45.00 3.01
7331 8002 8.502105 AAAAGACTTATATTTAGGAACGGGTG 57.498 34.615 0.00 0.00 0.00 4.61
7332 8003 6.170846 AGACTTATATTTAGGAACGGGTGG 57.829 41.667 0.00 0.00 0.00 4.61
7333 8004 5.901276 AGACTTATATTTAGGAACGGGTGGA 59.099 40.000 0.00 0.00 0.00 4.02
7334 8005 6.041751 AGACTTATATTTAGGAACGGGTGGAG 59.958 42.308 0.00 0.00 0.00 3.86
7335 8006 5.664457 ACTTATATTTAGGAACGGGTGGAGT 59.336 40.000 0.00 0.00 0.00 3.85
7452 8126 6.936900 TCCTGCTATAAGGTAATCTGCAAATC 59.063 38.462 0.00 0.00 38.58 2.17
7510 8184 8.613060 ACCTGCATCTTTGATATATGTTGTAG 57.387 34.615 0.00 0.00 0.00 2.74
7593 8269 5.799936 CACGTAGATAATTGCAAAACCCTTG 59.200 40.000 1.71 0.00 0.00 3.61
7613 8289 3.810579 GGCATCTCTAGCCGATGAG 57.189 57.895 19.72 0.00 43.15 2.90
7614 8290 0.965439 GGCATCTCTAGCCGATGAGT 59.035 55.000 19.72 0.00 43.15 3.41
7615 8291 1.342819 GGCATCTCTAGCCGATGAGTT 59.657 52.381 19.72 0.00 43.15 3.01
7616 8292 2.558795 GGCATCTCTAGCCGATGAGTTA 59.441 50.000 19.72 0.00 43.15 2.24
7617 8293 3.005897 GGCATCTCTAGCCGATGAGTTAA 59.994 47.826 19.72 0.00 43.15 2.01
7618 8294 4.501571 GGCATCTCTAGCCGATGAGTTAAA 60.502 45.833 19.72 0.00 43.15 1.52
7619 8295 4.446051 GCATCTCTAGCCGATGAGTTAAAC 59.554 45.833 19.72 3.33 40.47 2.01
7620 8296 4.288670 TCTCTAGCCGATGAGTTAAACG 57.711 45.455 0.00 0.00 0.00 3.60
7621 8297 3.066342 TCTCTAGCCGATGAGTTAAACGG 59.934 47.826 0.00 0.00 46.74 4.44
7622 8298 2.756760 TCTAGCCGATGAGTTAAACGGT 59.243 45.455 0.00 0.00 45.91 4.83
7623 8299 1.722011 AGCCGATGAGTTAAACGGTG 58.278 50.000 0.00 0.00 45.91 4.94
7624 8300 1.001633 AGCCGATGAGTTAAACGGTGT 59.998 47.619 0.00 0.00 45.91 4.16
7625 8301 1.802365 GCCGATGAGTTAAACGGTGTT 59.198 47.619 0.00 0.00 45.91 3.32
7626 8302 2.224784 GCCGATGAGTTAAACGGTGTTT 59.775 45.455 0.00 0.22 45.91 2.83
7627 8303 3.805823 CCGATGAGTTAAACGGTGTTTG 58.194 45.455 5.24 0.00 40.42 2.93
7628 8304 3.364565 CCGATGAGTTAAACGGTGTTTGG 60.365 47.826 5.24 0.00 40.42 3.28
7629 8305 3.495377 CGATGAGTTAAACGGTGTTTGGA 59.505 43.478 5.24 0.00 0.00 3.53
7630 8306 4.609783 CGATGAGTTAAACGGTGTTTGGAC 60.610 45.833 5.24 4.45 0.00 4.02
7631 8307 2.944349 TGAGTTAAACGGTGTTTGGACC 59.056 45.455 5.24 0.00 0.00 4.46
7632 8308 3.208594 GAGTTAAACGGTGTTTGGACCT 58.791 45.455 5.24 0.00 33.35 3.85
7633 8309 4.141756 TGAGTTAAACGGTGTTTGGACCTA 60.142 41.667 5.24 0.00 33.35 3.08
7634 8310 4.383173 AGTTAAACGGTGTTTGGACCTAG 58.617 43.478 5.24 0.00 33.35 3.02
7635 8311 4.129380 GTTAAACGGTGTTTGGACCTAGT 58.871 43.478 5.24 0.00 33.35 2.57
7636 8312 3.286329 AAACGGTGTTTGGACCTAGTT 57.714 42.857 0.00 0.00 33.35 2.24
7637 8313 2.249844 ACGGTGTTTGGACCTAGTTG 57.750 50.000 0.00 0.00 33.35 3.16
7638 8314 1.764134 ACGGTGTTTGGACCTAGTTGA 59.236 47.619 0.00 0.00 33.35 3.18
7639 8315 2.171027 ACGGTGTTTGGACCTAGTTGAA 59.829 45.455 0.00 0.00 33.35 2.69
7640 8316 2.546789 CGGTGTTTGGACCTAGTTGAAC 59.453 50.000 0.00 0.00 33.35 3.18
7641 8317 2.882761 GGTGTTTGGACCTAGTTGAACC 59.117 50.000 0.00 0.00 32.69 3.62
7642 8318 2.882761 GTGTTTGGACCTAGTTGAACCC 59.117 50.000 0.00 0.00 0.00 4.11
7643 8319 2.781174 TGTTTGGACCTAGTTGAACCCT 59.219 45.455 0.00 0.00 0.00 4.34
7644 8320 3.203487 TGTTTGGACCTAGTTGAACCCTT 59.797 43.478 0.00 0.00 0.00 3.95
7645 8321 3.502123 TTGGACCTAGTTGAACCCTTG 57.498 47.619 0.00 0.00 0.00 3.61
7646 8322 2.414612 TGGACCTAGTTGAACCCTTGT 58.585 47.619 0.00 0.00 0.00 3.16
7647 8323 3.589641 TGGACCTAGTTGAACCCTTGTA 58.410 45.455 0.00 0.00 0.00 2.41
7648 8324 4.172807 TGGACCTAGTTGAACCCTTGTAT 58.827 43.478 0.00 0.00 0.00 2.29
7649 8325 4.224370 TGGACCTAGTTGAACCCTTGTATC 59.776 45.833 0.00 0.00 0.00 2.24
7650 8326 4.224370 GGACCTAGTTGAACCCTTGTATCA 59.776 45.833 0.00 0.00 0.00 2.15
7651 8327 5.161943 ACCTAGTTGAACCCTTGTATCAC 57.838 43.478 0.00 0.00 0.00 3.06
7652 8328 4.595781 ACCTAGTTGAACCCTTGTATCACA 59.404 41.667 0.00 0.00 0.00 3.58
7653 8329 5.250774 ACCTAGTTGAACCCTTGTATCACAT 59.749 40.000 0.00 0.00 0.00 3.21
7654 8330 6.442564 ACCTAGTTGAACCCTTGTATCACATA 59.557 38.462 0.00 0.00 0.00 2.29
7655 8331 6.761714 CCTAGTTGAACCCTTGTATCACATAC 59.238 42.308 0.00 0.00 36.29 2.39
7656 8332 6.374417 AGTTGAACCCTTGTATCACATACT 57.626 37.500 0.00 0.00 36.70 2.12
7657 8333 6.407202 AGTTGAACCCTTGTATCACATACTC 58.593 40.000 0.00 0.00 36.70 2.59
7658 8334 5.353394 TGAACCCTTGTATCACATACTCC 57.647 43.478 0.00 0.00 36.70 3.85
7659 8335 4.163458 TGAACCCTTGTATCACATACTCCC 59.837 45.833 0.00 0.00 36.70 4.30
7660 8336 4.008916 ACCCTTGTATCACATACTCCCT 57.991 45.455 0.00 0.00 36.70 4.20
7661 8337 3.967987 ACCCTTGTATCACATACTCCCTC 59.032 47.826 0.00 0.00 36.70 4.30
7662 8338 3.325135 CCCTTGTATCACATACTCCCTCC 59.675 52.174 0.00 0.00 36.70 4.30
7663 8339 3.005897 CCTTGTATCACATACTCCCTCCG 59.994 52.174 0.00 0.00 36.70 4.63
7664 8340 3.308035 TGTATCACATACTCCCTCCGT 57.692 47.619 0.00 0.00 36.70 4.69
7665 8341 3.638860 TGTATCACATACTCCCTCCGTT 58.361 45.455 0.00 0.00 36.70 4.44
7666 8342 3.635373 TGTATCACATACTCCCTCCGTTC 59.365 47.826 0.00 0.00 36.70 3.95
7667 8343 1.481871 TCACATACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
7668 8344 1.191535 CACATACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
7669 8345 1.553248 CACATACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
7670 8346 2.027561 CACATACTCCCTCCGTTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
7671 8347 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
7672 8348 2.845363 TACTCCCTCCGTTCCAAAAC 57.155 50.000 0.00 0.00 0.00 2.43
7673 8349 0.841289 ACTCCCTCCGTTCCAAAACA 59.159 50.000 0.00 0.00 34.93 2.83
7674 8350 1.202770 ACTCCCTCCGTTCCAAAACAG 60.203 52.381 0.00 0.00 34.93 3.16
7675 8351 1.071699 CTCCCTCCGTTCCAAAACAGA 59.928 52.381 0.00 0.00 34.93 3.41
7676 8352 1.702957 TCCCTCCGTTCCAAAACAGAT 59.297 47.619 0.00 0.00 34.93 2.90
7677 8353 1.812571 CCCTCCGTTCCAAAACAGATG 59.187 52.381 0.00 0.00 34.93 2.90
7678 8354 2.552155 CCCTCCGTTCCAAAACAGATGA 60.552 50.000 0.00 0.00 34.93 2.92
7679 8355 2.484264 CCTCCGTTCCAAAACAGATGAC 59.516 50.000 0.00 0.00 34.93 3.06
7680 8356 2.484264 CTCCGTTCCAAAACAGATGACC 59.516 50.000 0.00 0.00 34.93 4.02
7681 8357 2.105821 TCCGTTCCAAAACAGATGACCT 59.894 45.455 0.00 0.00 34.93 3.85
7682 8358 3.325425 TCCGTTCCAAAACAGATGACCTA 59.675 43.478 0.00 0.00 34.93 3.08
7683 8359 4.069304 CCGTTCCAAAACAGATGACCTAA 58.931 43.478 0.00 0.00 34.93 2.69
7684 8360 4.700213 CCGTTCCAAAACAGATGACCTAAT 59.300 41.667 0.00 0.00 34.93 1.73
7685 8361 5.183140 CCGTTCCAAAACAGATGACCTAATT 59.817 40.000 0.00 0.00 34.93 1.40
7686 8362 6.294508 CCGTTCCAAAACAGATGACCTAATTT 60.295 38.462 0.00 0.00 34.93 1.82
7687 8363 7.145323 CGTTCCAAAACAGATGACCTAATTTT 58.855 34.615 0.00 0.00 34.93 1.82
7688 8364 8.293867 CGTTCCAAAACAGATGACCTAATTTTA 58.706 33.333 0.00 0.00 34.93 1.52
7736 8412 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
7737 8413 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
7738 8414 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
7739 8415 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
7740 8416 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
7741 8417 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
7742 8418 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
7743 8419 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
7744 8420 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
7745 8421 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
7746 8422 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
7747 8423 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
7748 8424 2.093128 TCTATTTTGGAACGGAGGGAGC 60.093 50.000 0.00 0.00 0.00 4.70
7749 8425 0.404040 ATTTTGGAACGGAGGGAGCA 59.596 50.000 0.00 0.00 0.00 4.26
7750 8426 0.536460 TTTTGGAACGGAGGGAGCAC 60.536 55.000 0.00 0.00 0.00 4.40
7751 8427 1.701031 TTTGGAACGGAGGGAGCACA 61.701 55.000 0.00 0.00 0.00 4.57
7752 8428 1.488705 TTGGAACGGAGGGAGCACAT 61.489 55.000 0.00 0.00 0.00 3.21
7753 8429 1.299976 GGAACGGAGGGAGCACATT 59.700 57.895 0.00 0.00 0.00 2.71
7754 8430 0.322546 GGAACGGAGGGAGCACATTT 60.323 55.000 0.00 0.00 0.00 2.32
7755 8431 1.065709 GGAACGGAGGGAGCACATTTA 60.066 52.381 0.00 0.00 0.00 1.40
7756 8432 2.617021 GGAACGGAGGGAGCACATTTAA 60.617 50.000 0.00 0.00 0.00 1.52
7757 8433 2.871096 ACGGAGGGAGCACATTTAAA 57.129 45.000 0.00 0.00 0.00 1.52
7758 8434 3.149005 ACGGAGGGAGCACATTTAAAA 57.851 42.857 0.00 0.00 0.00 1.52
7759 8435 3.697166 ACGGAGGGAGCACATTTAAAAT 58.303 40.909 0.00 0.00 0.00 1.82
7760 8436 4.086457 ACGGAGGGAGCACATTTAAAATT 58.914 39.130 0.00 0.00 0.00 1.82
7761 8437 5.258051 ACGGAGGGAGCACATTTAAAATTA 58.742 37.500 0.00 0.00 0.00 1.40
7762 8438 5.891551 ACGGAGGGAGCACATTTAAAATTAT 59.108 36.000 0.00 0.00 0.00 1.28
7763 8439 6.379988 ACGGAGGGAGCACATTTAAAATTATT 59.620 34.615 0.00 0.00 0.00 1.40
7764 8440 6.697019 CGGAGGGAGCACATTTAAAATTATTG 59.303 38.462 0.00 0.00 0.00 1.90
7765 8441 7.555965 GGAGGGAGCACATTTAAAATTATTGT 58.444 34.615 0.00 0.00 0.00 2.71
7766 8442 8.040727 GGAGGGAGCACATTTAAAATTATTGTT 58.959 33.333 0.00 0.00 0.00 2.83
7767 8443 9.087424 GAGGGAGCACATTTAAAATTATTGTTC 57.913 33.333 0.00 0.00 0.00 3.18
7768 8444 7.759433 AGGGAGCACATTTAAAATTATTGTTCG 59.241 33.333 0.00 0.00 0.00 3.95
7769 8445 7.757624 GGGAGCACATTTAAAATTATTGTTCGA 59.242 33.333 0.00 0.00 0.00 3.71
7770 8446 8.798153 GGAGCACATTTAAAATTATTGTTCGAG 58.202 33.333 0.00 0.00 0.00 4.04
7771 8447 9.341899 GAGCACATTTAAAATTATTGTTCGAGT 57.658 29.630 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 163 7.177498 TCATGCACAACTTATCATCGATTAC 57.823 36.000 0.00 0.00 0.00 1.89
267 269 2.047274 GGCTTGTCGCTGCCTACA 60.047 61.111 0.00 0.00 45.26 2.74
388 393 2.193447 CGGTTCCACTCACACATATCG 58.807 52.381 0.00 0.00 0.00 2.92
687 707 6.963017 AAACGAACATAGCTTACAAAAACG 57.037 33.333 0.00 0.00 0.00 3.60
691 711 9.440784 CTTACAAAAACGAACATAGCTTACAAA 57.559 29.630 0.00 0.00 0.00 2.83
692 712 7.588488 GCTTACAAAAACGAACATAGCTTACAA 59.412 33.333 0.00 0.00 0.00 2.41
693 713 7.041644 AGCTTACAAAAACGAACATAGCTTACA 60.042 33.333 0.00 0.00 32.97 2.41
694 714 7.295930 AGCTTACAAAAACGAACATAGCTTAC 58.704 34.615 0.00 0.00 32.97 2.34
695 715 7.429636 AGCTTACAAAAACGAACATAGCTTA 57.570 32.000 0.00 0.00 32.97 3.09
719 739 5.682943 AGACGTTTTTGCAAGCTATGTTA 57.317 34.783 0.00 0.00 0.00 2.41
720 740 4.568152 AGACGTTTTTGCAAGCTATGTT 57.432 36.364 0.00 0.00 0.00 2.71
721 741 4.568152 AAGACGTTTTTGCAAGCTATGT 57.432 36.364 0.00 0.68 0.00 2.29
722 742 8.736742 CAATATAAGACGTTTTTGCAAGCTATG 58.263 33.333 0.00 0.00 0.00 2.23
723 743 8.458843 ACAATATAAGACGTTTTTGCAAGCTAT 58.541 29.630 0.00 0.00 0.00 2.97
724 744 7.748683 CACAATATAAGACGTTTTTGCAAGCTA 59.251 33.333 0.00 0.00 0.00 3.32
725 745 6.582295 CACAATATAAGACGTTTTTGCAAGCT 59.418 34.615 0.00 0.00 0.00 3.74
726 746 6.183359 CCACAATATAAGACGTTTTTGCAAGC 60.183 38.462 0.00 0.00 0.00 4.01
728 748 6.016192 TCCCACAATATAAGACGTTTTTGCAA 60.016 34.615 0.00 0.00 0.00 4.08
730 750 5.798434 GTCCCACAATATAAGACGTTTTTGC 59.202 40.000 0.00 0.00 0.00 3.68
731 751 6.319399 GGTCCCACAATATAAGACGTTTTTG 58.681 40.000 0.00 0.00 0.00 2.44
738 1140 3.244112 CCCTCGGTCCCACAATATAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
792 1194 5.588648 ACTTTCCACGAATACATAACATGGG 59.411 40.000 0.00 0.00 33.60 4.00
794 1196 7.072177 ACACTTTCCACGAATACATAACATG 57.928 36.000 0.00 0.00 0.00 3.21
795 1197 8.958119 ATACACTTTCCACGAATACATAACAT 57.042 30.769 0.00 0.00 0.00 2.71
825 1227 2.818130 TGAAAATTGCCTCAACCTGC 57.182 45.000 0.00 0.00 0.00 4.85
878 1280 0.240678 GTCAACATTGCCACGATGCA 59.759 50.000 0.00 0.00 40.07 3.96
879 1281 0.523072 AGTCAACATTGCCACGATGC 59.477 50.000 0.00 0.00 0.00 3.91
880 1282 2.995466 AAGTCAACATTGCCACGATG 57.005 45.000 0.00 0.00 0.00 3.84
881 1283 3.190535 GGTTAAGTCAACATTGCCACGAT 59.809 43.478 0.00 0.00 39.04 3.73
882 1284 2.550606 GGTTAAGTCAACATTGCCACGA 59.449 45.455 0.00 0.00 39.04 4.35
883 1285 2.552315 AGGTTAAGTCAACATTGCCACG 59.448 45.455 0.00 0.00 39.04 4.94
884 1286 3.317993 ACAGGTTAAGTCAACATTGCCAC 59.682 43.478 0.00 0.00 39.04 5.01
897 1299 3.826157 TGGAAGATTGCCAACAGGTTAAG 59.174 43.478 0.00 0.00 31.13 1.85
903 1305 0.169672 CGCTGGAAGATTGCCAACAG 59.830 55.000 0.00 0.00 34.07 3.16
942 1344 0.250901 GACTCCTTGGCTCCTTGCAA 60.251 55.000 0.00 0.00 45.15 4.08
981 1383 5.974108 TGCATTACAGTAACTAAGGGAGTC 58.026 41.667 0.00 0.00 37.44 3.36
1122 1555 4.437495 CGCCATTTATTTTGCACGAGTATG 59.563 41.667 0.00 0.00 0.00 2.39
1199 1642 1.759236 GAACGGAACTGGAAGGGGT 59.241 57.895 0.00 0.00 39.30 4.95
1265 1709 1.447643 CCGCCAGAAGTAGATGGGG 59.552 63.158 1.58 1.58 46.24 4.96
1645 2089 3.851128 GCAGGACCCCGCTACCTC 61.851 72.222 0.00 0.00 31.06 3.85
1719 2163 2.022527 AGAAATAGGGTCCTGGCTCTCT 60.023 50.000 0.00 0.00 0.00 3.10
1735 2179 5.012893 GTGTGGATCCCTCAAGAAAGAAAT 58.987 41.667 9.90 0.00 0.00 2.17
1753 2197 4.041917 GGCATGTGCACGGTGTGG 62.042 66.667 19.31 4.81 44.36 4.17
1759 2203 3.792047 CACTCCGGCATGTGCACG 61.792 66.667 13.13 7.91 44.36 5.34
1790 2234 4.878397 CCTGACACAATAAATCACCCTCTC 59.122 45.833 0.00 0.00 0.00 3.20
1793 2237 3.877735 GCCCTGACACAATAAATCACCCT 60.878 47.826 0.00 0.00 0.00 4.34
1799 2243 4.352009 TGGATTGCCCTGACACAATAAAT 58.648 39.130 0.00 0.00 36.65 1.40
1809 2253 4.591321 AGAGTTAATTGGATTGCCCTGA 57.409 40.909 0.00 0.00 35.38 3.86
1814 2258 6.924111 TGAGGAAAAGAGTTAATTGGATTGC 58.076 36.000 0.00 0.00 0.00 3.56
1815 2259 7.394359 TCCTGAGGAAAAGAGTTAATTGGATTG 59.606 37.037 0.00 0.00 0.00 2.67
1822 2266 9.018582 CAAATTCTCCTGAGGAAAAGAGTTAAT 57.981 33.333 1.41 0.00 0.00 1.40
1831 2275 2.436417 CCGCAAATTCTCCTGAGGAAA 58.564 47.619 1.41 0.51 34.71 3.13
1842 2286 2.159801 GCATTCTTGTTGCCGCAAATTC 60.160 45.455 7.54 0.00 33.95 2.17
1882 2326 1.377202 CATCAGGTTGGTGTCCCGG 60.377 63.158 0.00 0.00 0.00 5.73
1883 2327 0.250727 AACATCAGGTTGGTGTCCCG 60.251 55.000 0.00 0.00 41.60 5.14
1924 2368 1.333619 TCGTTTGCTTCTTTGAGGCAC 59.666 47.619 3.89 0.00 43.96 5.01
1968 2412 3.561725 GCTCTACATTCCCATTACTGCAC 59.438 47.826 0.00 0.00 0.00 4.57
2049 2493 1.448985 GCATTTCAGGTCTTACGCCA 58.551 50.000 0.00 0.00 0.00 5.69
2053 2497 1.324736 CGCTCGCATTTCAGGTCTTAC 59.675 52.381 0.00 0.00 0.00 2.34
2097 2541 0.178903 TAGGGTGGAGAAGCTGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
2142 2586 2.605837 TGTCAGAGGTAAACGTTGCA 57.394 45.000 0.00 0.00 0.00 4.08
2151 2595 2.027192 GCACCAGGAAATGTCAGAGGTA 60.027 50.000 0.00 0.00 0.00 3.08
2172 2616 0.315251 TCAACAGTGGAGAGAGCACG 59.685 55.000 0.00 0.00 0.00 5.34
2196 2640 2.584835 TCTCAACATGACAAAGGGGG 57.415 50.000 0.00 0.00 0.00 5.40
2243 2687 5.892568 ACCTGAGAGACGTACATCAATTAC 58.107 41.667 0.00 0.00 0.00 1.89
2346 2790 5.248477 AGGGACTGCAGTTCTATTTTCACTA 59.752 40.000 24.35 0.00 37.18 2.74
2366 2810 4.644163 TTAGGATGGTTTTCGAAAGGGA 57.356 40.909 10.98 0.00 0.00 4.20
2422 2866 5.943706 AGCATGAGATATTAGCTTGCAAG 57.056 39.130 22.44 22.44 35.79 4.01
2424 2868 5.824097 TGAAAGCATGAGATATTAGCTTGCA 59.176 36.000 8.00 2.19 45.82 4.08
2425 2869 6.309712 TGAAAGCATGAGATATTAGCTTGC 57.690 37.500 0.00 0.00 44.03 4.01
2535 2980 5.772393 TCCTCCAGGAAAGTTATGCTTAA 57.228 39.130 0.00 0.00 42.18 1.85
2752 3197 6.604396 TCAAGACAAGACATTATGGCATGAAT 59.396 34.615 10.44 3.50 29.99 2.57
2792 3237 3.181493 GCATAGCAACAGAAATCACCAGG 60.181 47.826 0.00 0.00 0.00 4.45
2827 3273 4.023279 TGCCACTGCACAAAGTATAGTTTG 60.023 41.667 25.04 25.04 44.23 2.93
2913 3359 4.636206 GTCCCTCGAATGCACTAAAAAGAT 59.364 41.667 0.00 0.00 0.00 2.40
2950 3396 3.433274 TGAATGAAACTAACTGAGCAGCG 59.567 43.478 0.00 0.00 0.00 5.18
3028 3474 5.649831 ACCAGCTCCTTCAAAATCATACTTC 59.350 40.000 0.00 0.00 0.00 3.01
3180 3626 5.746284 AGTTATTCTTCCTAAGGGCTTCAC 58.254 41.667 0.00 0.00 0.00 3.18
3245 3691 7.892778 TTGTACTTGAGAATGTACGCAAATA 57.107 32.000 0.00 0.00 41.16 1.40
3267 3713 7.711339 AGAACTAGAAGTTAGGACAAGTGTTTG 59.289 37.037 0.00 0.00 38.80 2.93
3309 3755 3.260884 GTGTCTGGTCAGGAAATAGGTCA 59.739 47.826 0.00 0.00 0.00 4.02
3318 3764 2.801077 TCGATAGTGTCTGGTCAGGA 57.199 50.000 0.00 0.00 37.40 3.86
3380 3826 7.801104 TGCACAGAACCAAGGAATATTCTATA 58.199 34.615 14.95 0.00 30.28 1.31
3616 4062 5.971763 AGTTACACATTTTGAGGTTTGCAA 58.028 33.333 0.00 0.00 0.00 4.08
3657 4103 0.806868 ACAAAGCACATCAGGATGCG 59.193 50.000 9.12 1.15 46.74 4.73
4052 4498 3.453868 TGAAGGGAGATGTTCATCCTGA 58.546 45.455 8.89 0.00 35.80 3.86
4061 4507 2.306805 TGAGCACAATGAAGGGAGATGT 59.693 45.455 0.00 0.00 0.00 3.06
4067 4513 2.233271 ACAAGTGAGCACAATGAAGGG 58.767 47.619 11.66 0.00 0.00 3.95
4085 4531 2.032030 GCTTCTTTTCAAGCACGCTACA 60.032 45.455 0.26 0.00 46.93 2.74
4095 4541 2.745379 GCCCAGGGCTTCTTTTCAA 58.255 52.632 24.99 0.00 46.69 2.69
4350 4796 5.212589 ACGATAATTCAACTTACGCCAAC 57.787 39.130 0.00 0.00 0.00 3.77
4442 4888 3.582714 TGCACTATCGCATCTATCCTG 57.417 47.619 0.00 0.00 36.86 3.86
4462 4908 0.704664 GTGGGGACTGGGGAGAAATT 59.295 55.000 0.00 0.00 0.00 1.82
4532 4990 7.772332 ATAAACGCTGAATTTACTAGTCAGG 57.228 36.000 0.00 0.00 46.43 3.86
4541 4999 7.027161 GGCAAGAAGAATAAACGCTGAATTTA 58.973 34.615 0.00 0.00 0.00 1.40
4658 5117 4.222124 ACTAAACATAGCAGGGGACAAG 57.778 45.455 0.00 0.00 0.00 3.16
4662 5121 3.457012 GGGTTACTAAACATAGCAGGGGA 59.543 47.826 0.00 0.00 37.34 4.81
4693 5152 6.327934 GCAGAACAATGCAGATCATAGTTTT 58.672 36.000 0.00 0.00 45.77 2.43
4882 5341 6.214615 TGAACTGTGGATTAATAGAAGTCCCA 59.785 38.462 0.00 0.00 0.00 4.37
5003 5462 4.466370 CCAGGAAGTTACTGAGATGGTGTA 59.534 45.833 17.22 0.00 38.20 2.90
5042 5501 3.724374 CATGGGAAATGAATGTCCATGC 58.276 45.455 7.57 0.00 45.27 4.06
5068 5527 1.212935 CCACCCCACTAGGAAGATTGG 59.787 57.143 0.00 0.00 38.24 3.16
5070 5529 0.919710 GCCACCCCACTAGGAAGATT 59.080 55.000 0.00 0.00 38.24 2.40
5254 5713 5.997129 TGAATGTGTCATGAGCTCTTTAACA 59.003 36.000 16.19 12.06 0.00 2.41
5297 5756 2.435805 TGAAGGAAGTAGCTAGGCCATG 59.564 50.000 5.01 0.00 0.00 3.66
5329 5788 9.561069 GAACTAAAGCATCCCAGATTAATAAGA 57.439 33.333 0.00 0.00 0.00 2.10
5331 5790 9.693739 TTGAACTAAAGCATCCCAGATTAATAA 57.306 29.630 0.00 0.00 0.00 1.40
5472 5931 6.605471 AATGGAAGAAAAACTATTCCCACC 57.395 37.500 1.02 0.00 41.54 4.61
5565 6024 8.110271 TGGAGTATATGAGATGGGTAGAAGTAG 58.890 40.741 0.00 0.00 0.00 2.57
5808 6466 2.852714 TGGGACGGAGGGAGTAATAA 57.147 50.000 0.00 0.00 0.00 1.40
5809 6467 4.474303 TTATGGGACGGAGGGAGTAATA 57.526 45.455 0.00 0.00 0.00 0.98
5810 6468 3.339713 TTATGGGACGGAGGGAGTAAT 57.660 47.619 0.00 0.00 0.00 1.89
5811 6469 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
5813 6471 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5814 6472 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
5816 6474 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
5817 6475 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
5818 6476 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
5819 6477 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
5820 6478 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
5821 6479 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
5822 6480 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
5823 6481 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
5824 6482 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
5825 6483 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
5828 6486 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
5829 6487 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
5830 6488 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
5831 6489 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
5832 6490 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
5833 6491 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
5834 6492 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
5835 6493 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
5836 6494 4.743644 ACTACACTAGTGTCAAAAACGCTC 59.256 41.667 31.11 0.00 45.69 5.03
5863 6521 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
5864 6522 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
5865 6523 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
5866 6524 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
5867 6525 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
5868 6526 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
5869 6527 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
5870 6528 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
5871 6529 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
5872 6530 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
5873 6531 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
5874 6532 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
5875 6533 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5876 6534 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
5877 6535 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
5878 6536 4.687262 ATATACTCCCTCCGTCCCATAA 57.313 45.455 0.00 0.00 0.00 1.90
5879 6537 5.015497 TGTTATATACTCCCTCCGTCCCATA 59.985 44.000 0.00 0.00 0.00 2.74
5880 6538 4.202749 TGTTATATACTCCCTCCGTCCCAT 60.203 45.833 0.00 0.00 0.00 4.00
5881 6539 3.140707 TGTTATATACTCCCTCCGTCCCA 59.859 47.826 0.00 0.00 0.00 4.37
5882 6540 3.771216 TGTTATATACTCCCTCCGTCCC 58.229 50.000 0.00 0.00 0.00 4.46
5883 6541 5.721232 CATTGTTATATACTCCCTCCGTCC 58.279 45.833 0.00 0.00 0.00 4.79
5884 6542 5.169295 GCATTGTTATATACTCCCTCCGTC 58.831 45.833 0.00 0.00 0.00 4.79
5885 6543 4.321750 CGCATTGTTATATACTCCCTCCGT 60.322 45.833 0.00 0.00 0.00 4.69
5886 6544 4.082408 TCGCATTGTTATATACTCCCTCCG 60.082 45.833 0.00 0.00 0.00 4.63
5887 6545 5.401531 TCGCATTGTTATATACTCCCTCC 57.598 43.478 0.00 0.00 0.00 4.30
5888 6546 7.907214 AAATCGCATTGTTATATACTCCCTC 57.093 36.000 0.00 0.00 0.00 4.30
5889 6547 9.959721 ATTAAATCGCATTGTTATATACTCCCT 57.040 29.630 0.00 0.00 0.00 4.20
5890 6548 9.988350 CATTAAATCGCATTGTTATATACTCCC 57.012 33.333 0.00 0.00 0.00 4.30
5891 6549 9.988350 CCATTAAATCGCATTGTTATATACTCC 57.012 33.333 0.00 0.00 0.00 3.85
5924 6582 5.582953 TCATCATTGTGAATTCCTTTCCCT 58.417 37.500 2.27 0.00 33.04 4.20
5951 6609 3.395941 ACCTGTTGAGGGTGAGAGAATTT 59.604 43.478 0.00 0.00 44.84 1.82
6057 6715 7.148869 GGACGCCTTAAAAACAATGATTGTAAC 60.149 37.037 11.70 0.00 44.59 2.50
6058 6716 6.864165 GGACGCCTTAAAAACAATGATTGTAA 59.136 34.615 11.70 1.28 44.59 2.41
6059 6717 6.383415 GGACGCCTTAAAAACAATGATTGTA 58.617 36.000 11.70 0.00 44.59 2.41
6061 6719 4.625311 GGGACGCCTTAAAAACAATGATTG 59.375 41.667 3.16 3.16 0.00 2.67
6062 6720 4.816392 GGGACGCCTTAAAAACAATGATT 58.184 39.130 0.00 0.00 0.00 2.57
6063 6721 4.450082 GGGACGCCTTAAAAACAATGAT 57.550 40.909 0.00 0.00 0.00 2.45
6064 6722 3.926821 GGGACGCCTTAAAAACAATGA 57.073 42.857 0.00 0.00 0.00 2.57
6081 6739 2.998480 TAAGCGTCCAAGGCGGGA 60.998 61.111 0.00 0.00 33.62 5.14
6082 6740 2.511600 CTAAGCGTCCAAGGCGGG 60.512 66.667 5.39 0.00 33.62 6.13
6083 6741 2.511600 CCTAAGCGTCCAAGGCGG 60.512 66.667 5.39 0.00 33.62 6.13
6084 6742 3.195698 GCCTAAGCGTCCAAGGCG 61.196 66.667 0.00 0.00 45.82 5.52
6113 6771 0.106918 TATTTGTAAGGCGCTGGGGG 60.107 55.000 7.64 0.00 0.00 5.40
6114 6772 1.608590 CATATTTGTAAGGCGCTGGGG 59.391 52.381 7.64 0.00 0.00 4.96
6115 6773 1.001378 GCATATTTGTAAGGCGCTGGG 60.001 52.381 7.64 0.00 0.00 4.45
6116 6774 1.001378 GGCATATTTGTAAGGCGCTGG 60.001 52.381 7.64 0.00 0.00 4.85
6117 6775 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
6118 6776 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
6119 6777 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
6120 6778 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
6121 6779 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
6122 6780 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
6123 6781 3.502211 CCTAAGGCGGGCATATTTGTAAG 59.498 47.826 3.78 0.00 0.00 2.34
6124 6782 3.482436 CCTAAGGCGGGCATATTTGTAA 58.518 45.455 3.78 0.00 0.00 2.41
6125 6783 3.134574 CCTAAGGCGGGCATATTTGTA 57.865 47.619 3.78 0.00 0.00 2.41
6126 6784 1.981256 CCTAAGGCGGGCATATTTGT 58.019 50.000 3.78 0.00 0.00 2.83
6177 6835 4.176752 GACCTAAGGCGCTGGGGG 62.177 72.222 7.64 7.91 0.00 5.40
6178 6836 4.530857 CGACCTAAGGCGCTGGGG 62.531 72.222 7.64 7.52 0.00 4.96
6181 6839 2.292794 TAAGGCGACCTAAGGCGCTG 62.293 60.000 20.95 0.00 43.61 5.18
6182 6840 2.056223 TAAGGCGACCTAAGGCGCT 61.056 57.895 20.95 8.24 43.61 5.92
6183 6841 1.881709 GTAAGGCGACCTAAGGCGC 60.882 63.158 15.21 15.21 43.47 6.53
6184 6842 1.227176 GGTAAGGCGACCTAAGGCG 60.227 63.158 4.54 0.00 39.33 5.52
6185 6843 1.227176 CGGTAAGGCGACCTAAGGC 60.227 63.158 9.52 0.00 37.34 4.35
6186 6844 1.227176 GCGGTAAGGCGACCTAAGG 60.227 63.158 9.52 0.00 37.34 2.69
6187 6845 1.227176 GGCGGTAAGGCGACCTAAG 60.227 63.158 9.52 0.00 37.34 2.18
6188 6846 2.894919 GGCGGTAAGGCGACCTAA 59.105 61.111 9.52 0.00 37.34 2.69
6195 6853 8.017611 AACCATAGTTTTTAAGGCGGTAAGGC 62.018 42.308 0.00 0.00 38.26 4.35
6196 6854 4.945543 ACCATAGTTTTTAAGGCGGTAAGG 59.054 41.667 0.00 0.00 0.00 2.69
6197 6855 6.505044 AACCATAGTTTTTAAGGCGGTAAG 57.495 37.500 0.00 0.00 29.61 2.34
6198 6856 6.939163 TGTAACCATAGTTTTTAAGGCGGTAA 59.061 34.615 0.00 0.00 37.42 2.85
6199 6857 6.471146 TGTAACCATAGTTTTTAAGGCGGTA 58.529 36.000 0.00 0.00 37.42 4.02
6200 6858 5.315348 TGTAACCATAGTTTTTAAGGCGGT 58.685 37.500 0.00 0.00 37.42 5.68
6201 6859 5.883503 TGTAACCATAGTTTTTAAGGCGG 57.116 39.130 0.00 0.00 37.42 6.13
6457 7115 0.609957 CTCCTTTGACATGCCTGGCA 60.610 55.000 25.65 25.65 44.86 4.92
6578 7236 3.545124 TTCGGCCATGGCTTGTCGT 62.545 57.895 34.70 0.00 41.60 4.34
6659 7317 2.502947 AGATAGCTCAACCACATGCTCA 59.497 45.455 0.00 0.00 37.02 4.26
6674 7332 3.876274 TCAGGACAACAGTCAGATAGC 57.124 47.619 0.00 0.00 33.90 2.97
6710 7368 5.240623 CCATAGAGTCTCTGCGTAGATCTTT 59.759 44.000 12.92 7.12 31.21 2.52
6752 7410 2.025887 GGAATCTTTTCCCTGGCTCTGA 60.026 50.000 0.00 0.00 44.96 3.27
6799 7457 9.436957 GAATATCTGGTCTGTACTTTCTGAAAA 57.563 33.333 4.18 0.00 0.00 2.29
6837 7497 2.674796 AATGTACTCTCCTTGGACGC 57.325 50.000 0.00 0.00 0.00 5.19
6876 7536 5.066593 AGGAACTTTTGGAATCTGTCTGTC 58.933 41.667 0.00 0.00 27.25 3.51
7062 7729 6.458232 ACACCACACAATACAAGCTAAAAA 57.542 33.333 0.00 0.00 0.00 1.94
7063 7730 7.663905 AGATACACCACACAATACAAGCTAAAA 59.336 33.333 0.00 0.00 0.00 1.52
7064 7731 7.165485 AGATACACCACACAATACAAGCTAAA 58.835 34.615 0.00 0.00 0.00 1.85
7065 7732 6.707290 AGATACACCACACAATACAAGCTAA 58.293 36.000 0.00 0.00 0.00 3.09
7072 7739 6.985188 ATGACAAGATACACCACACAATAC 57.015 37.500 0.00 0.00 0.00 1.89
7211 7882 9.268282 TGTAGTGGAATCTCTAAAAAGACCTAT 57.732 33.333 0.00 0.00 0.00 2.57
7212 7883 8.660295 TGTAGTGGAATCTCTAAAAAGACCTA 57.340 34.615 0.00 0.00 0.00 3.08
7213 7884 7.554959 TGTAGTGGAATCTCTAAAAAGACCT 57.445 36.000 0.00 0.00 0.00 3.85
7214 7885 8.504815 GTTTGTAGTGGAATCTCTAAAAAGACC 58.495 37.037 3.22 0.00 30.99 3.85
7215 7886 9.274206 AGTTTGTAGTGGAATCTCTAAAAAGAC 57.726 33.333 3.22 0.00 30.99 3.01
7219 7890 9.485206 GTGTAGTTTGTAGTGGAATCTCTAAAA 57.515 33.333 0.00 0.00 0.00 1.52
7220 7891 7.811236 CGTGTAGTTTGTAGTGGAATCTCTAAA 59.189 37.037 0.00 0.00 0.00 1.85
7221 7892 7.040201 ACGTGTAGTTTGTAGTGGAATCTCTAA 60.040 37.037 0.00 0.00 0.00 2.10
7222 7893 6.432162 ACGTGTAGTTTGTAGTGGAATCTCTA 59.568 38.462 0.00 0.00 0.00 2.43
7223 7894 5.243283 ACGTGTAGTTTGTAGTGGAATCTCT 59.757 40.000 0.00 0.00 0.00 3.10
7224 7895 5.467705 ACGTGTAGTTTGTAGTGGAATCTC 58.532 41.667 0.00 0.00 0.00 2.75
7225 7896 5.464030 ACGTGTAGTTTGTAGTGGAATCT 57.536 39.130 0.00 0.00 0.00 2.40
7228 7899 9.394767 TCTATATACGTGTAGTTTGTAGTGGAA 57.605 33.333 0.00 0.00 31.20 3.53
7229 7900 8.830580 GTCTATATACGTGTAGTTTGTAGTGGA 58.169 37.037 0.00 0.00 31.20 4.02
7230 7901 8.615211 TGTCTATATACGTGTAGTTTGTAGTGG 58.385 37.037 0.00 0.00 31.20 4.00
7250 7921 9.197694 GCAAAACGAGTGAATCTATATGTCTAT 57.802 33.333 0.00 0.00 0.00 1.98
7251 7922 8.414003 AGCAAAACGAGTGAATCTATATGTCTA 58.586 33.333 0.00 0.00 0.00 2.59
7252 7923 7.268586 AGCAAAACGAGTGAATCTATATGTCT 58.731 34.615 0.00 0.00 0.00 3.41
7253 7924 7.306866 GGAGCAAAACGAGTGAATCTATATGTC 60.307 40.741 0.00 0.00 0.00 3.06
7254 7925 6.480320 GGAGCAAAACGAGTGAATCTATATGT 59.520 38.462 0.00 0.00 0.00 2.29
7255 7926 6.346120 CGGAGCAAAACGAGTGAATCTATATG 60.346 42.308 0.00 0.00 0.00 1.78
7256 7927 5.692204 CGGAGCAAAACGAGTGAATCTATAT 59.308 40.000 0.00 0.00 0.00 0.86
7257 7928 5.041287 CGGAGCAAAACGAGTGAATCTATA 58.959 41.667 0.00 0.00 0.00 1.31
7258 7929 3.865745 CGGAGCAAAACGAGTGAATCTAT 59.134 43.478 0.00 0.00 0.00 1.98
7259 7930 3.250744 CGGAGCAAAACGAGTGAATCTA 58.749 45.455 0.00 0.00 0.00 1.98
7260 7931 2.069273 CGGAGCAAAACGAGTGAATCT 58.931 47.619 0.00 0.00 0.00 2.40
7261 7932 1.798813 ACGGAGCAAAACGAGTGAATC 59.201 47.619 0.00 0.00 0.00 2.52
7262 7933 1.878953 ACGGAGCAAAACGAGTGAAT 58.121 45.000 0.00 0.00 0.00 2.57
7263 7934 2.512485 TACGGAGCAAAACGAGTGAA 57.488 45.000 0.00 0.00 0.00 3.18
7264 7935 2.230508 AGATACGGAGCAAAACGAGTGA 59.769 45.455 0.00 0.00 0.00 3.41
7265 7936 2.607187 AGATACGGAGCAAAACGAGTG 58.393 47.619 0.00 0.00 0.00 3.51
7266 7937 3.442977 ACTAGATACGGAGCAAAACGAGT 59.557 43.478 0.00 0.00 0.00 4.18
7267 7938 4.030134 ACTAGATACGGAGCAAAACGAG 57.970 45.455 0.00 0.00 0.00 4.18
7268 7939 3.181493 GGACTAGATACGGAGCAAAACGA 60.181 47.826 0.00 0.00 0.00 3.85
7269 7940 3.114065 GGACTAGATACGGAGCAAAACG 58.886 50.000 0.00 0.00 0.00 3.60
7270 7941 4.119442 TGGACTAGATACGGAGCAAAAC 57.881 45.455 0.00 0.00 0.00 2.43
7271 7942 5.597182 ACTATGGACTAGATACGGAGCAAAA 59.403 40.000 0.00 0.00 0.00 2.44
7272 7943 5.009710 CACTATGGACTAGATACGGAGCAAA 59.990 44.000 0.00 0.00 0.00 3.68
7273 7944 4.519350 CACTATGGACTAGATACGGAGCAA 59.481 45.833 0.00 0.00 0.00 3.91
7274 7945 4.072839 CACTATGGACTAGATACGGAGCA 58.927 47.826 0.00 0.00 0.00 4.26
7275 7946 3.440872 CCACTATGGACTAGATACGGAGC 59.559 52.174 0.00 0.00 40.96 4.70
7276 7947 4.907809 TCCACTATGGACTAGATACGGAG 58.092 47.826 0.00 0.00 42.67 4.63
7277 7948 4.987963 TCCACTATGGACTAGATACGGA 57.012 45.455 0.00 0.00 42.67 4.69
7288 7959 8.380742 AGTCTTTTTAGAGATTCCACTATGGA 57.619 34.615 0.00 0.00 46.61 3.41
7305 7976 8.953313 CACCCGTTCCTAAATATAAGTCTTTTT 58.047 33.333 0.00 0.00 0.00 1.94
7306 7977 7.555195 CCACCCGTTCCTAAATATAAGTCTTTT 59.445 37.037 0.00 0.00 0.00 2.27
7307 7978 7.052248 CCACCCGTTCCTAAATATAAGTCTTT 58.948 38.462 0.00 0.00 0.00 2.52
7308 7979 6.384886 TCCACCCGTTCCTAAATATAAGTCTT 59.615 38.462 0.00 0.00 0.00 3.01
7309 7980 5.901276 TCCACCCGTTCCTAAATATAAGTCT 59.099 40.000 0.00 0.00 0.00 3.24
7310 7981 6.165700 TCCACCCGTTCCTAAATATAAGTC 57.834 41.667 0.00 0.00 0.00 3.01
7311 7982 5.664457 ACTCCACCCGTTCCTAAATATAAGT 59.336 40.000 0.00 0.00 0.00 2.24
7312 7983 6.170846 ACTCCACCCGTTCCTAAATATAAG 57.829 41.667 0.00 0.00 0.00 1.73
7313 7984 6.840705 AGTACTCCACCCGTTCCTAAATATAA 59.159 38.462 0.00 0.00 0.00 0.98
7314 7985 6.376248 AGTACTCCACCCGTTCCTAAATATA 58.624 40.000 0.00 0.00 0.00 0.86
7315 7986 5.214293 AGTACTCCACCCGTTCCTAAATAT 58.786 41.667 0.00 0.00 0.00 1.28
7316 7987 4.613437 AGTACTCCACCCGTTCCTAAATA 58.387 43.478 0.00 0.00 0.00 1.40
7317 7988 3.447950 AGTACTCCACCCGTTCCTAAAT 58.552 45.455 0.00 0.00 0.00 1.40
7318 7989 2.893424 AGTACTCCACCCGTTCCTAAA 58.107 47.619 0.00 0.00 0.00 1.85
7319 7990 2.610438 AGTACTCCACCCGTTCCTAA 57.390 50.000 0.00 0.00 0.00 2.69
7320 7991 2.610438 AAGTACTCCACCCGTTCCTA 57.390 50.000 0.00 0.00 0.00 2.94
7321 7992 1.725803 AAAGTACTCCACCCGTTCCT 58.274 50.000 0.00 0.00 0.00 3.36
7322 7993 2.564504 AGTAAAGTACTCCACCCGTTCC 59.435 50.000 0.00 0.00 32.47 3.62
7323 7994 3.006217 ACAGTAAAGTACTCCACCCGTTC 59.994 47.826 0.00 0.00 36.76 3.95
7324 7995 2.967887 ACAGTAAAGTACTCCACCCGTT 59.032 45.455 0.00 0.00 36.76 4.44
7325 7996 2.298163 CACAGTAAAGTACTCCACCCGT 59.702 50.000 0.00 0.00 36.76 5.28
7326 7997 2.929592 GCACAGTAAAGTACTCCACCCG 60.930 54.545 0.00 0.00 36.76 5.28
7327 7998 2.038033 TGCACAGTAAAGTACTCCACCC 59.962 50.000 0.00 0.00 36.76 4.61
7328 7999 3.396260 TGCACAGTAAAGTACTCCACC 57.604 47.619 0.00 0.00 36.76 4.61
7329 8000 4.566004 TCATGCACAGTAAAGTACTCCAC 58.434 43.478 0.00 0.00 36.76 4.02
7330 8001 4.882842 TCATGCACAGTAAAGTACTCCA 57.117 40.909 0.00 0.00 36.76 3.86
7331 8002 5.063944 CACATCATGCACAGTAAAGTACTCC 59.936 44.000 0.00 0.00 36.76 3.85
7332 8003 6.099579 CACATCATGCACAGTAAAGTACTC 57.900 41.667 0.00 0.00 36.76 2.59
7465 8139 9.838339 TGCAGGTTTTATTTTAATTTCAAAGGA 57.162 25.926 0.00 0.00 0.00 3.36
7504 8178 6.623767 GCAGATGGAAAGGATGAAACTACAAC 60.624 42.308 0.00 0.00 0.00 3.32
7510 8184 4.789012 TTGCAGATGGAAAGGATGAAAC 57.211 40.909 0.00 0.00 0.00 2.78
7611 8287 3.208594 AGGTCCAAACACCGTTTAACTC 58.791 45.455 0.00 0.00 41.90 3.01
7612 8288 3.286329 AGGTCCAAACACCGTTTAACT 57.714 42.857 0.00 0.00 41.90 2.24
7613 8289 4.129380 ACTAGGTCCAAACACCGTTTAAC 58.871 43.478 0.00 0.00 41.90 2.01
7614 8290 4.420522 ACTAGGTCCAAACACCGTTTAA 57.579 40.909 0.00 0.00 41.90 1.52
7615 8291 4.128643 CAACTAGGTCCAAACACCGTTTA 58.871 43.478 0.00 0.00 41.90 2.01
7616 8292 2.946990 CAACTAGGTCCAAACACCGTTT 59.053 45.455 0.00 0.00 41.90 3.60
7617 8293 2.171027 TCAACTAGGTCCAAACACCGTT 59.829 45.455 0.00 0.00 41.90 4.44
7618 8294 1.764134 TCAACTAGGTCCAAACACCGT 59.236 47.619 0.00 0.00 41.90 4.83
7619 8295 2.536761 TCAACTAGGTCCAAACACCG 57.463 50.000 0.00 0.00 41.90 4.94
7620 8296 2.882761 GGTTCAACTAGGTCCAAACACC 59.117 50.000 0.00 0.00 36.58 4.16
7621 8297 2.882761 GGGTTCAACTAGGTCCAAACAC 59.117 50.000 0.00 0.00 0.00 3.32
7622 8298 2.781174 AGGGTTCAACTAGGTCCAAACA 59.219 45.455 0.00 0.00 0.00 2.83
7623 8299 3.503800 AGGGTTCAACTAGGTCCAAAC 57.496 47.619 0.00 0.00 0.00 2.93
7624 8300 3.203487 ACAAGGGTTCAACTAGGTCCAAA 59.797 43.478 0.00 0.00 0.00 3.28
7625 8301 2.781174 ACAAGGGTTCAACTAGGTCCAA 59.219 45.455 0.00 0.00 0.00 3.53
7626 8302 2.414612 ACAAGGGTTCAACTAGGTCCA 58.585 47.619 0.00 0.00 0.00 4.02
7627 8303 4.224370 TGATACAAGGGTTCAACTAGGTCC 59.776 45.833 0.00 0.00 0.00 4.46
7628 8304 5.176592 GTGATACAAGGGTTCAACTAGGTC 58.823 45.833 0.00 0.00 0.00 3.85
7629 8305 4.595781 TGTGATACAAGGGTTCAACTAGGT 59.404 41.667 0.00 0.00 0.00 3.08
7630 8306 5.160607 TGTGATACAAGGGTTCAACTAGG 57.839 43.478 0.00 0.00 0.00 3.02
7631 8307 7.556844 AGTATGTGATACAAGGGTTCAACTAG 58.443 38.462 0.00 0.00 38.21 2.57
7632 8308 7.364408 GGAGTATGTGATACAAGGGTTCAACTA 60.364 40.741 0.00 0.00 38.21 2.24
7633 8309 6.374417 AGTATGTGATACAAGGGTTCAACT 57.626 37.500 0.00 0.00 38.21 3.16
7634 8310 5.585047 GGAGTATGTGATACAAGGGTTCAAC 59.415 44.000 0.00 0.00 38.21 3.18
7635 8311 5.338871 GGGAGTATGTGATACAAGGGTTCAA 60.339 44.000 0.00 0.00 38.21 2.69
7636 8312 4.163458 GGGAGTATGTGATACAAGGGTTCA 59.837 45.833 0.00 0.00 38.21 3.18
7637 8313 4.409247 AGGGAGTATGTGATACAAGGGTTC 59.591 45.833 0.00 0.00 38.21 3.62
7638 8314 4.371681 AGGGAGTATGTGATACAAGGGTT 58.628 43.478 0.00 0.00 38.21 4.11
7639 8315 3.967987 GAGGGAGTATGTGATACAAGGGT 59.032 47.826 0.00 0.00 38.21 4.34
7640 8316 3.325135 GGAGGGAGTATGTGATACAAGGG 59.675 52.174 0.00 0.00 38.21 3.95
7641 8317 3.005897 CGGAGGGAGTATGTGATACAAGG 59.994 52.174 0.00 0.00 38.21 3.61
7642 8318 3.637229 ACGGAGGGAGTATGTGATACAAG 59.363 47.826 0.00 0.00 38.21 3.16
7643 8319 3.638860 ACGGAGGGAGTATGTGATACAA 58.361 45.455 0.00 0.00 38.21 2.41
7644 8320 3.308035 ACGGAGGGAGTATGTGATACA 57.692 47.619 0.00 0.00 38.21 2.29
7645 8321 3.005578 GGAACGGAGGGAGTATGTGATAC 59.994 52.174 0.00 0.00 35.99 2.24
7646 8322 3.228453 GGAACGGAGGGAGTATGTGATA 58.772 50.000 0.00 0.00 0.00 2.15
7647 8323 2.040178 GGAACGGAGGGAGTATGTGAT 58.960 52.381 0.00 0.00 0.00 3.06
7648 8324 1.272816 TGGAACGGAGGGAGTATGTGA 60.273 52.381 0.00 0.00 0.00 3.58
7649 8325 1.191535 TGGAACGGAGGGAGTATGTG 58.808 55.000 0.00 0.00 0.00 3.21
7650 8326 1.946984 TTGGAACGGAGGGAGTATGT 58.053 50.000 0.00 0.00 0.00 2.29
7651 8327 3.007635 GTTTTGGAACGGAGGGAGTATG 58.992 50.000 0.00 0.00 0.00 2.39
7652 8328 2.640826 TGTTTTGGAACGGAGGGAGTAT 59.359 45.455 0.00 0.00 38.65 2.12
7653 8329 2.038033 CTGTTTTGGAACGGAGGGAGTA 59.962 50.000 0.00 0.00 43.47 2.59
7654 8330 0.841289 TGTTTTGGAACGGAGGGAGT 59.159 50.000 0.00 0.00 38.65 3.85
7655 8331 1.071699 TCTGTTTTGGAACGGAGGGAG 59.928 52.381 0.00 0.00 44.24 4.30
7656 8332 1.133363 TCTGTTTTGGAACGGAGGGA 58.867 50.000 0.00 0.00 44.24 4.20
7657 8333 3.717842 TCTGTTTTGGAACGGAGGG 57.282 52.632 0.00 0.00 44.24 4.30
7661 8337 2.504367 AGGTCATCTGTTTTGGAACGG 58.496 47.619 0.00 0.00 42.39 4.44
7662 8338 5.880054 ATTAGGTCATCTGTTTTGGAACG 57.120 39.130 0.00 0.00 38.65 3.95
7710 8386 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
7711 8387 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
7712 8388 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
7713 8389 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
7714 8390 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
7715 8391 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
7716 8392 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
7717 8393 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
7718 8394 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
7719 8395 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
7720 8396 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
7721 8397 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
7722 8398 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
7723 8399 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
7724 8400 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
7725 8401 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
7726 8402 3.433740 GCTCCCTCCGTTCCAAAATAGAT 60.434 47.826 0.00 0.00 0.00 1.98
7727 8403 2.093128 GCTCCCTCCGTTCCAAAATAGA 60.093 50.000 0.00 0.00 0.00 1.98
7728 8404 2.289565 GCTCCCTCCGTTCCAAAATAG 58.710 52.381 0.00 0.00 0.00 1.73
7729 8405 1.631388 TGCTCCCTCCGTTCCAAAATA 59.369 47.619 0.00 0.00 0.00 1.40
7730 8406 0.404040 TGCTCCCTCCGTTCCAAAAT 59.596 50.000 0.00 0.00 0.00 1.82
7731 8407 0.536460 GTGCTCCCTCCGTTCCAAAA 60.536 55.000 0.00 0.00 0.00 2.44
7732 8408 1.072505 GTGCTCCCTCCGTTCCAAA 59.927 57.895 0.00 0.00 0.00 3.28
7733 8409 1.488705 ATGTGCTCCCTCCGTTCCAA 61.489 55.000 0.00 0.00 0.00 3.53
7734 8410 1.488705 AATGTGCTCCCTCCGTTCCA 61.489 55.000 0.00 0.00 0.00 3.53
7735 8411 0.322546 AAATGTGCTCCCTCCGTTCC 60.323 55.000 0.00 0.00 0.00 3.62
7736 8412 2.396590 TAAATGTGCTCCCTCCGTTC 57.603 50.000 0.00 0.00 0.00 3.95
7737 8413 2.871096 TTAAATGTGCTCCCTCCGTT 57.129 45.000 0.00 0.00 0.00 4.44
7738 8414 2.871096 TTTAAATGTGCTCCCTCCGT 57.129 45.000 0.00 0.00 0.00 4.69
7739 8415 4.718940 AATTTTAAATGTGCTCCCTCCG 57.281 40.909 0.00 0.00 0.00 4.63
7740 8416 7.555965 ACAATAATTTTAAATGTGCTCCCTCC 58.444 34.615 0.00 0.00 0.00 4.30
7741 8417 9.087424 GAACAATAATTTTAAATGTGCTCCCTC 57.913 33.333 0.00 0.00 0.00 4.30
7742 8418 7.759433 CGAACAATAATTTTAAATGTGCTCCCT 59.241 33.333 0.00 0.00 0.00 4.20
7743 8419 7.757624 TCGAACAATAATTTTAAATGTGCTCCC 59.242 33.333 0.00 0.00 0.00 4.30
7744 8420 8.682128 TCGAACAATAATTTTAAATGTGCTCC 57.318 30.769 0.00 0.00 0.00 4.70
7745 8421 9.341899 ACTCGAACAATAATTTTAAATGTGCTC 57.658 29.630 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.