Multiple sequence alignment - TraesCS2A01G289100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G289100 chr2A 100.000 3410 0 0 1 3410 497438181 497441590 0.000000e+00 6298.0
1 TraesCS2A01G289100 chr2A 93.750 48 0 1 3040 3087 497441177 497441221 6.110000e-08 69.4
2 TraesCS2A01G289100 chr2A 93.750 48 0 1 2997 3041 497441220 497441267 6.110000e-08 69.4
3 TraesCS2A01G289100 chr2A 100.000 32 0 0 2781 2812 5913864 5913895 3.670000e-05 60.2
4 TraesCS2A01G289100 chr2A 100.000 32 0 0 2781 2812 149066967 149066998 3.670000e-05 60.2
5 TraesCS2A01G289100 chr2B 96.116 1828 62 2 930 2757 436025528 436027346 0.000000e+00 2974.0
6 TraesCS2A01G289100 chr2B 97.705 305 7 0 593 897 24865916 24866220 3.010000e-145 525.0
7 TraesCS2A01G289100 chr2B 93.985 266 14 2 3039 3302 436028288 436028553 5.300000e-108 401.0
8 TraesCS2A01G289100 chr2B 89.610 154 11 4 2892 3041 436028184 436028336 1.250000e-44 191.0
9 TraesCS2A01G289100 chr2B 95.588 68 3 0 3343 3410 436028561 436028628 3.600000e-20 110.0
10 TraesCS2A01G289100 chr2B 94.595 37 2 0 2776 2812 6216736 6216772 1.320000e-04 58.4
11 TraesCS2A01G289100 chr2D 95.375 1773 68 3 930 2701 367226513 367228272 0.000000e+00 2808.0
12 TraesCS2A01G289100 chr2D 94.278 367 17 3 3040 3404 367228577 367228941 2.970000e-155 558.0
13 TraesCS2A01G289100 chr2D 91.367 139 11 1 2811 2949 367228426 367228563 4.490000e-44 189.0
14 TraesCS2A01G289100 chr2D 90.000 50 1 2 2996 3041 367228576 367228625 1.020000e-05 62.1
15 TraesCS2A01G289100 chr3A 91.364 579 39 5 1 579 469501545 469500978 0.000000e+00 782.0
16 TraesCS2A01G289100 chr4D 90.989 566 40 5 1 556 370056250 370055686 0.000000e+00 752.0
17 TraesCS2A01G289100 chr5D 88.889 594 33 7 1 561 47330512 47331105 0.000000e+00 701.0
18 TraesCS2A01G289100 chr5D 87.500 592 40 18 3 561 224085489 224086079 0.000000e+00 652.0
19 TraesCS2A01G289100 chr5D 88.235 306 28 5 249 554 17810206 17810503 3.240000e-95 359.0
20 TraesCS2A01G289100 chr5D 97.059 34 1 0 2778 2811 548954612 548954645 1.320000e-04 58.4
21 TraesCS2A01G289100 chr1B 87.692 585 43 11 1 579 242727573 242728134 0.000000e+00 654.0
22 TraesCS2A01G289100 chr6B 87.047 579 48 18 1 557 62821583 62821010 2.230000e-176 628.0
23 TraesCS2A01G289100 chr4B 87.391 571 43 11 1 565 655817296 655817843 2.230000e-176 628.0
24 TraesCS2A01G289100 chr4B 97.386 306 8 0 592 897 40215533 40215228 3.900000e-144 521.0
25 TraesCS2A01G289100 chr5B 86.882 587 42 19 3 556 247231763 247231179 2.890000e-175 625.0
26 TraesCS2A01G289100 chr5B 86.700 594 38 16 1 579 615376060 615375493 3.740000e-174 621.0
27 TraesCS2A01G289100 chr7D 87.302 567 42 19 1 554 595501652 595502201 3.740000e-174 621.0
28 TraesCS2A01G289100 chr7B 87.132 544 33 11 2 523 566841984 566841456 1.760000e-162 582.0
29 TraesCS2A01G289100 chr7B 97.377 305 8 0 593 897 717329211 717328907 1.400000e-143 520.0
30 TraesCS2A01G289100 chr7B 89.960 249 22 2 331 579 149632574 149632329 5.490000e-83 318.0
31 TraesCS2A01G289100 chr7B 97.143 35 1 0 2778 2812 458521304 458521270 3.670000e-05 60.2
32 TraesCS2A01G289100 chrUn 84.274 585 43 16 1 579 101577280 101577821 3.010000e-145 525.0
33 TraesCS2A01G289100 chrUn 93.538 325 19 2 2 325 392806953 392807276 1.840000e-132 483.0
34 TraesCS2A01G289100 chr5A 97.697 304 7 0 593 896 563891934 563891631 1.080000e-144 523.0
35 TraesCS2A01G289100 chr6A 97.386 306 8 0 593 898 181910152 181909847 3.900000e-144 521.0
36 TraesCS2A01G289100 chr3B 97.386 306 8 0 592 897 766049706 766049401 3.900000e-144 521.0
37 TraesCS2A01G289100 chr7A 97.068 307 9 0 593 899 198415331 198415637 5.040000e-143 518.0
38 TraesCS2A01G289100 chr7A 97.059 306 9 0 592 897 4785069 4784764 1.810000e-142 516.0
39 TraesCS2A01G289100 chr7A 97.351 302 8 0 593 894 144653431 144653732 6.530000e-142 514.0
40 TraesCS2A01G289100 chr7A 100.000 32 0 0 2781 2812 53623277 53623308 3.670000e-05 60.2
41 TraesCS2A01G289100 chr4A 93.538 325 19 2 2 325 741251557 741251234 1.840000e-132 483.0
42 TraesCS2A01G289100 chr1A 93.538 325 20 1 1 325 95532963 95532640 1.840000e-132 483.0
43 TraesCS2A01G289100 chr1A 89.394 264 20 5 320 579 95532607 95532348 3.280000e-85 326.0
44 TraesCS2A01G289100 chr3D 88.798 366 26 8 167 522 54001282 54001642 5.230000e-118 435.0
45 TraesCS2A01G289100 chr3D 100.000 31 0 0 2781 2811 64483310 64483280 1.320000e-04 58.4
46 TraesCS2A01G289100 chr3D 97.059 34 1 0 2779 2812 527148291 527148324 1.320000e-04 58.4
47 TraesCS2A01G289100 chr1D 97.368 38 1 0 2775 2812 475604472 475604509 7.900000e-07 65.8
48 TraesCS2A01G289100 chr1D 97.059 34 1 0 2778 2811 287466165 287466198 1.320000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G289100 chr2A 497438181 497441590 3409 False 2145.600 6298 95.833333 1 3410 3 chr2A.!!$F3 3409
1 TraesCS2A01G289100 chr2B 436025528 436028628 3100 False 919.000 2974 93.824750 930 3410 4 chr2B.!!$F3 2480
2 TraesCS2A01G289100 chr2D 367226513 367228941 2428 False 904.275 2808 92.755000 930 3404 4 chr2D.!!$F1 2474
3 TraesCS2A01G289100 chr3A 469500978 469501545 567 True 782.000 782 91.364000 1 579 1 chr3A.!!$R1 578
4 TraesCS2A01G289100 chr4D 370055686 370056250 564 True 752.000 752 90.989000 1 556 1 chr4D.!!$R1 555
5 TraesCS2A01G289100 chr5D 47330512 47331105 593 False 701.000 701 88.889000 1 561 1 chr5D.!!$F2 560
6 TraesCS2A01G289100 chr5D 224085489 224086079 590 False 652.000 652 87.500000 3 561 1 chr5D.!!$F3 558
7 TraesCS2A01G289100 chr1B 242727573 242728134 561 False 654.000 654 87.692000 1 579 1 chr1B.!!$F1 578
8 TraesCS2A01G289100 chr6B 62821010 62821583 573 True 628.000 628 87.047000 1 557 1 chr6B.!!$R1 556
9 TraesCS2A01G289100 chr4B 655817296 655817843 547 False 628.000 628 87.391000 1 565 1 chr4B.!!$F1 564
10 TraesCS2A01G289100 chr5B 247231179 247231763 584 True 625.000 625 86.882000 3 556 1 chr5B.!!$R1 553
11 TraesCS2A01G289100 chr5B 615375493 615376060 567 True 621.000 621 86.700000 1 579 1 chr5B.!!$R2 578
12 TraesCS2A01G289100 chr7D 595501652 595502201 549 False 621.000 621 87.302000 1 554 1 chr7D.!!$F1 553
13 TraesCS2A01G289100 chr7B 566841456 566841984 528 True 582.000 582 87.132000 2 523 1 chr7B.!!$R3 521
14 TraesCS2A01G289100 chrUn 101577280 101577821 541 False 525.000 525 84.274000 1 579 1 chrUn.!!$F1 578
15 TraesCS2A01G289100 chr1A 95532348 95532963 615 True 404.500 483 91.466000 1 579 2 chr1A.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 1052 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.0 4.96 0.0 31.08 2.90 F
823 1068 0.043485 TCATAGGGGTAGGGTGTGCA 59.957 55.0 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 1899 0.322816 AATGCAACATCGTCTGGCCT 60.323 50.0 3.32 0.0 0.0 5.19 R
2817 3147 0.108138 CATGAACCACTCCCTCCGTC 60.108 60.0 0.00 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.224075 CTGCTCCTATTGCATCCACG 58.776 55.000 0.00 0.00 39.86 4.94
27 28 0.466007 ATTGCATCCACGGCAGCATA 60.466 50.000 0.00 0.00 43.05 3.14
320 521 2.034179 CAGTGGCAATATGGAGCATGTG 59.966 50.000 0.00 0.00 0.00 3.21
341 579 2.158784 GCAGAATCTGAGGCAGAGGAAT 60.159 50.000 15.38 0.00 44.08 3.01
378 616 0.977395 GCACCTGTAGAAGACCCACT 59.023 55.000 0.00 0.00 0.00 4.00
416 654 1.272490 CCAGAGCGGTAGAACTTGACA 59.728 52.381 0.00 0.00 0.00 3.58
423 661 2.671351 CGGTAGAACTTGACATGCTCGT 60.671 50.000 0.00 0.00 0.00 4.18
580 825 3.706373 GCAGTGGCGGAGGGAGAA 61.706 66.667 0.00 0.00 0.00 2.87
581 826 2.581354 CAGTGGCGGAGGGAGAAG 59.419 66.667 0.00 0.00 0.00 2.85
582 827 2.120718 AGTGGCGGAGGGAGAAGT 59.879 61.111 0.00 0.00 0.00 3.01
583 828 1.985116 AGTGGCGGAGGGAGAAGTC 60.985 63.158 0.00 0.00 0.00 3.01
584 829 2.683933 TGGCGGAGGGAGAAGTCC 60.684 66.667 0.00 0.00 43.05 3.85
585 830 2.683933 GGCGGAGGGAGAAGTCCA 60.684 66.667 0.00 0.00 46.07 4.02
586 831 2.066999 GGCGGAGGGAGAAGTCCAT 61.067 63.158 0.00 0.00 46.07 3.41
587 832 1.627297 GGCGGAGGGAGAAGTCCATT 61.627 60.000 0.00 0.00 46.07 3.16
588 833 0.462759 GCGGAGGGAGAAGTCCATTG 60.463 60.000 0.00 0.00 46.07 2.82
589 834 1.195115 CGGAGGGAGAAGTCCATTGA 58.805 55.000 0.00 0.00 46.07 2.57
590 835 1.555075 CGGAGGGAGAAGTCCATTGAA 59.445 52.381 0.00 0.00 46.07 2.69
591 836 2.027192 CGGAGGGAGAAGTCCATTGAAA 60.027 50.000 0.00 0.00 46.07 2.69
592 837 3.615155 GGAGGGAGAAGTCCATTGAAAG 58.385 50.000 0.00 0.00 46.07 2.62
593 838 3.013219 GAGGGAGAAGTCCATTGAAAGC 58.987 50.000 0.00 0.00 46.07 3.51
594 839 1.740025 GGGAGAAGTCCATTGAAAGCG 59.260 52.381 0.00 0.00 46.07 4.68
595 840 2.615493 GGGAGAAGTCCATTGAAAGCGA 60.615 50.000 0.00 0.00 46.07 4.93
596 841 3.074412 GGAGAAGTCCATTGAAAGCGAA 58.926 45.455 0.00 0.00 43.31 4.70
597 842 3.691609 GGAGAAGTCCATTGAAAGCGAAT 59.308 43.478 0.00 0.00 43.31 3.34
598 843 4.201861 GGAGAAGTCCATTGAAAGCGAATC 60.202 45.833 0.00 0.00 43.31 2.52
599 844 4.326826 AGAAGTCCATTGAAAGCGAATCA 58.673 39.130 0.00 0.00 0.00 2.57
600 845 4.761739 AGAAGTCCATTGAAAGCGAATCAA 59.238 37.500 4.70 4.70 40.76 2.57
601 846 4.425577 AGTCCATTGAAAGCGAATCAAC 57.574 40.909 4.38 0.00 39.43 3.18
602 847 3.191371 AGTCCATTGAAAGCGAATCAACC 59.809 43.478 4.38 0.00 39.43 3.77
603 848 3.191371 GTCCATTGAAAGCGAATCAACCT 59.809 43.478 4.38 0.00 39.43 3.50
604 849 3.191162 TCCATTGAAAGCGAATCAACCTG 59.809 43.478 4.38 1.50 39.43 4.00
605 850 3.057315 CCATTGAAAGCGAATCAACCTGT 60.057 43.478 4.38 0.00 39.43 4.00
606 851 3.624326 TTGAAAGCGAATCAACCTGTG 57.376 42.857 0.00 0.00 32.10 3.66
607 852 1.879380 TGAAAGCGAATCAACCTGTGG 59.121 47.619 0.00 0.00 0.00 4.17
608 853 1.880027 GAAAGCGAATCAACCTGTGGT 59.120 47.619 0.00 0.00 37.65 4.16
618 863 2.525105 AACCTGTGGTTGAGTTGGTT 57.475 45.000 0.71 0.00 45.07 3.67
619 864 3.655615 AACCTGTGGTTGAGTTGGTTA 57.344 42.857 0.71 0.00 45.07 2.85
620 865 3.208747 ACCTGTGGTTGAGTTGGTTAG 57.791 47.619 0.00 0.00 27.29 2.34
621 866 2.158667 ACCTGTGGTTGAGTTGGTTAGG 60.159 50.000 0.00 0.00 27.29 2.69
622 867 2.158667 CCTGTGGTTGAGTTGGTTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
623 868 2.878406 CTGTGGTTGAGTTGGTTAGGTG 59.122 50.000 0.00 0.00 0.00 4.00
624 869 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
625 870 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
626 871 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
627 872 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
628 873 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
629 874 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
630 875 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
631 876 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
632 877 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
633 878 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
634 879 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
635 880 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
636 881 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
637 882 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
638 883 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
639 884 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
646 891 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
647 892 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
648 893 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
649 894 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
665 910 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
666 911 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
667 912 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
668 913 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
669 914 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
670 915 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
671 916 0.674581 TCAAATCCTGGTGCTCGCAG 60.675 55.000 0.00 0.00 0.00 5.18
672 917 0.957395 CAAATCCTGGTGCTCGCAGT 60.957 55.000 0.00 0.00 0.00 4.40
673 918 0.613260 AAATCCTGGTGCTCGCAGTA 59.387 50.000 0.00 0.00 0.00 2.74
674 919 0.833287 AATCCTGGTGCTCGCAGTAT 59.167 50.000 0.00 0.00 0.00 2.12
675 920 0.833287 ATCCTGGTGCTCGCAGTATT 59.167 50.000 0.00 0.00 0.00 1.89
676 921 0.175760 TCCTGGTGCTCGCAGTATTC 59.824 55.000 0.00 0.00 0.00 1.75
677 922 0.811616 CCTGGTGCTCGCAGTATTCC 60.812 60.000 0.00 0.00 0.00 3.01
678 923 0.176680 CTGGTGCTCGCAGTATTCCT 59.823 55.000 0.00 0.00 0.00 3.36
679 924 0.108186 TGGTGCTCGCAGTATTCCTG 60.108 55.000 0.00 0.00 44.53 3.86
680 925 0.175760 GGTGCTCGCAGTATTCCTGA 59.824 55.000 0.00 0.00 44.49 3.86
681 926 1.405526 GGTGCTCGCAGTATTCCTGAA 60.406 52.381 0.00 0.00 44.49 3.02
682 927 2.555199 GTGCTCGCAGTATTCCTGAAT 58.445 47.619 0.00 0.00 44.49 2.57
683 928 2.939103 GTGCTCGCAGTATTCCTGAATT 59.061 45.455 0.00 0.00 44.49 2.17
684 929 3.375299 GTGCTCGCAGTATTCCTGAATTT 59.625 43.478 0.00 0.00 44.49 1.82
685 930 4.570772 GTGCTCGCAGTATTCCTGAATTTA 59.429 41.667 0.00 0.00 44.49 1.40
686 931 5.237344 GTGCTCGCAGTATTCCTGAATTTAT 59.763 40.000 0.00 0.00 44.49 1.40
687 932 5.822519 TGCTCGCAGTATTCCTGAATTTATT 59.177 36.000 0.00 0.00 44.49 1.40
688 933 6.318648 TGCTCGCAGTATTCCTGAATTTATTT 59.681 34.615 0.00 0.00 44.49 1.40
689 934 6.853362 GCTCGCAGTATTCCTGAATTTATTTC 59.147 38.462 0.00 0.00 44.49 2.17
690 935 7.467267 GCTCGCAGTATTCCTGAATTTATTTCA 60.467 37.037 0.00 0.00 44.49 2.69
701 946 5.901552 TGAATTTATTTCAGGATTTCCGGC 58.098 37.500 0.00 0.00 39.44 6.13
702 947 4.568152 ATTTATTTCAGGATTTCCGGCG 57.432 40.909 0.00 0.00 42.08 6.46
703 948 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
704 949 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
705 950 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
706 951 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
707 952 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
718 963 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
719 964 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
720 965 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
721 966 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
722 967 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
723 968 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
724 969 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
725 970 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
726 971 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
727 972 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
728 973 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
729 974 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
752 997 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
755 1000 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
757 1002 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
760 1005 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
761 1006 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
762 1007 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
763 1008 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
764 1009 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
765 1010 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
766 1011 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
767 1012 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
768 1013 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
769 1014 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
770 1015 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
771 1016 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
772 1017 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
773 1018 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
774 1019 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
775 1020 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
776 1021 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
777 1022 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
778 1023 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
779 1024 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
780 1025 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
781 1026 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
782 1027 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
783 1028 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
784 1029 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
785 1030 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
786 1031 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
787 1032 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
788 1033 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
789 1034 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
790 1035 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
791 1036 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
792 1037 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
793 1038 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
794 1039 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
795 1040 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
796 1041 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
797 1042 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
798 1043 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
799 1044 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
800 1045 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
801 1046 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
802 1047 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
803 1048 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
804 1049 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
805 1050 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
806 1051 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
807 1052 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
808 1053 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
809 1054 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
810 1055 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
811 1056 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
812 1057 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
813 1058 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
814 1059 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
815 1060 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
816 1061 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
817 1062 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
818 1063 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
819 1064 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
820 1065 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
821 1066 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
822 1067 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
823 1068 0.043485 TCATAGGGGTAGGGTGTGCA 59.957 55.000 0.00 0.00 0.00 4.57
824 1069 1.140312 CATAGGGGTAGGGTGTGCAT 58.860 55.000 0.00 0.00 0.00 3.96
825 1070 1.140312 ATAGGGGTAGGGTGTGCATG 58.860 55.000 0.00 0.00 0.00 4.06
826 1071 1.632018 TAGGGGTAGGGTGTGCATGC 61.632 60.000 11.82 11.82 0.00 4.06
827 1072 2.824041 GGGTAGGGTGTGCATGCG 60.824 66.667 14.09 0.00 0.00 4.73
828 1073 2.046314 GGTAGGGTGTGCATGCGT 60.046 61.111 14.09 0.00 0.00 5.24
829 1074 2.398554 GGTAGGGTGTGCATGCGTG 61.399 63.158 14.09 0.09 0.00 5.34
838 1083 4.576843 GCATGCGTGCGTTCATAG 57.423 55.556 16.43 0.00 42.28 2.23
839 1084 1.010797 GCATGCGTGCGTTCATAGG 60.011 57.895 16.43 0.00 42.28 2.57
840 1085 1.643292 CATGCGTGCGTTCATAGGG 59.357 57.895 0.00 0.00 0.00 3.53
841 1086 1.523711 ATGCGTGCGTTCATAGGGG 60.524 57.895 0.00 0.00 0.00 4.79
842 1087 2.125269 GCGTGCGTTCATAGGGGT 60.125 61.111 0.00 0.00 0.00 4.95
843 1088 2.461110 GCGTGCGTTCATAGGGGTG 61.461 63.158 0.00 0.00 0.00 4.61
844 1089 1.216977 CGTGCGTTCATAGGGGTGA 59.783 57.895 0.00 0.00 0.00 4.02
845 1090 0.806102 CGTGCGTTCATAGGGGTGAG 60.806 60.000 0.00 0.00 0.00 3.51
846 1091 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
847 1092 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
848 1093 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
849 1094 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
850 1095 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
851 1096 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
852 1097 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
853 1098 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
854 1099 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
855 1100 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
856 1101 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
857 1102 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
858 1103 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
859 1104 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
860 1105 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
861 1106 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
862 1107 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
863 1108 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
864 1109 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
865 1110 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
866 1111 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
869 1114 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
870 1115 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
871 1116 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
872 1117 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
873 1118 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
874 1119 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
875 1120 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
876 1121 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
877 1122 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
878 1123 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
879 1124 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
880 1125 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
881 1126 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
882 1127 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
883 1128 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
884 1129 1.068588 AGCGCTTGTGTCTGTACTGAA 59.931 47.619 2.64 0.00 0.00 3.02
885 1130 1.457303 GCGCTTGTGTCTGTACTGAAG 59.543 52.381 0.00 0.00 0.00 3.02
886 1131 2.061773 CGCTTGTGTCTGTACTGAAGG 58.938 52.381 3.77 0.00 0.00 3.46
887 1132 2.545952 CGCTTGTGTCTGTACTGAAGGT 60.546 50.000 3.77 0.00 0.00 3.50
888 1133 3.060602 GCTTGTGTCTGTACTGAAGGTC 58.939 50.000 3.77 0.00 0.00 3.85
889 1134 3.492656 GCTTGTGTCTGTACTGAAGGTCA 60.493 47.826 3.77 0.00 0.00 4.02
890 1135 4.693283 CTTGTGTCTGTACTGAAGGTCAA 58.307 43.478 3.77 6.91 0.00 3.18
891 1136 4.746535 TGTGTCTGTACTGAAGGTCAAA 57.253 40.909 3.77 0.00 0.00 2.69
892 1137 5.092554 TGTGTCTGTACTGAAGGTCAAAA 57.907 39.130 3.77 0.00 0.00 2.44
893 1138 5.492895 TGTGTCTGTACTGAAGGTCAAAAA 58.507 37.500 3.77 0.00 0.00 1.94
990 1235 2.029666 CGCCATCCCTAAGCTCCG 59.970 66.667 0.00 0.00 0.00 4.63
1167 1412 2.428187 CCCAACACCCACACGCTA 59.572 61.111 0.00 0.00 0.00 4.26
1179 1424 3.382832 ACGCTACTCCTTGCCGCT 61.383 61.111 0.00 0.00 0.00 5.52
1236 1481 0.684805 TTCTCCTCCTCTTCCGCTCC 60.685 60.000 0.00 0.00 0.00 4.70
1251 1496 4.144727 TCCTCCCTCCGCCTCTCC 62.145 72.222 0.00 0.00 0.00 3.71
1473 1718 1.153823 CACACCGGACGTCATCTCC 60.154 63.158 18.91 0.00 0.00 3.71
1541 1786 1.064463 TGCCATGAAGGAGTTCCATCC 60.064 52.381 0.00 0.00 41.22 3.51
1630 1875 4.323477 AGGCGGTGGCGCTGTTTA 62.323 61.111 7.64 0.00 41.24 2.01
1654 1899 1.384502 ATGAGGGGCGAGGGATTGA 60.385 57.895 0.00 0.00 0.00 2.57
1672 1917 0.745845 GAGGCCAGACGATGTTGCAT 60.746 55.000 5.01 0.00 0.00 3.96
1723 1968 2.064581 GGGGCGCTAGAGAAGGGAA 61.065 63.158 7.64 0.00 40.56 3.97
1839 2084 1.152546 GGTTGCCCAGGAGGTGTTT 60.153 57.895 0.00 0.00 38.26 2.83
1959 2204 2.351276 CTGGTTGAGGGGGTTCGG 59.649 66.667 0.00 0.00 0.00 4.30
1971 2216 3.236003 GGTTCGGCCAGACGGAGTT 62.236 63.158 2.24 0.00 38.02 3.01
1986 2231 2.429971 CGGAGTTACCTTCTTAGGGGTC 59.570 54.545 1.69 0.00 46.58 4.46
2005 2250 1.209261 TCTTGATCGGTTGCAGCCATA 59.791 47.619 20.42 7.25 0.00 2.74
2101 2346 1.985473 TTATGGATGCATGGCTGACC 58.015 50.000 10.37 0.00 0.00 4.02
2145 2390 2.353889 CGAGGAAGCAATGAAGATGGTG 59.646 50.000 0.00 0.00 0.00 4.17
2358 2603 4.080299 AGGGTTAGGAAACTGATGGATCAC 60.080 45.833 0.00 0.00 43.88 3.06
2401 2646 2.550606 GGTTGCAGTTCCATTACAACGA 59.449 45.455 0.00 0.00 41.12 3.85
2504 2749 3.964031 AGTAGAAATCGGCTCAGGAAGAT 59.036 43.478 0.00 0.00 0.00 2.40
2562 2808 3.501445 AGTGACGAGGTATAAGGTATCGC 59.499 47.826 0.00 0.00 36.89 4.58
2648 2894 1.376037 GACCCAGACCTCTTTGCGG 60.376 63.158 0.00 0.00 0.00 5.69
2710 2956 7.828717 TGACAATGCATATTCAAGGACTTCTTA 59.171 33.333 0.00 0.00 33.68 2.10
2762 3028 5.009310 TGCAGCTTAGAATTCATGCTAATGG 59.991 40.000 15.85 8.08 34.30 3.16
2775 3041 0.679640 CTAATGGTTTCCCTGCCGCA 60.680 55.000 0.00 0.00 0.00 5.69
2776 3042 0.033601 TAATGGTTTCCCTGCCGCAT 60.034 50.000 0.00 0.00 0.00 4.73
2782 3110 1.135402 GTTTCCCTGCCGCATACTTTG 60.135 52.381 0.00 0.00 0.00 2.77
2808 3138 4.749245 AAATCAGCGACACTTACTTTGG 57.251 40.909 0.00 0.00 0.00 3.28
2809 3139 2.163818 TCAGCGACACTTACTTTGGG 57.836 50.000 0.00 0.00 0.00 4.12
2810 3140 1.689813 TCAGCGACACTTACTTTGGGA 59.310 47.619 0.00 0.00 0.00 4.37
2811 3141 1.798813 CAGCGACACTTACTTTGGGAC 59.201 52.381 0.00 0.00 0.00 4.46
2812 3142 1.692519 AGCGACACTTACTTTGGGACT 59.307 47.619 0.00 0.00 0.00 3.85
2813 3143 2.104281 AGCGACACTTACTTTGGGACTT 59.896 45.455 0.00 0.00 0.00 3.01
2814 3144 2.876550 GCGACACTTACTTTGGGACTTT 59.123 45.455 0.00 0.00 0.00 2.66
2815 3145 3.303791 GCGACACTTACTTTGGGACTTTG 60.304 47.826 0.00 0.00 0.00 2.77
2816 3146 3.250040 CGACACTTACTTTGGGACTTTGG 59.750 47.826 0.00 0.00 0.00 3.28
2817 3147 3.562182 ACACTTACTTTGGGACTTTGGG 58.438 45.455 0.00 0.00 0.00 4.12
2829 3159 1.296715 CTTTGGGACGGAGGGAGTG 59.703 63.158 0.00 0.00 0.00 3.51
2835 3165 1.265454 GGACGGAGGGAGTGGTTCAT 61.265 60.000 0.00 0.00 0.00 2.57
2852 3182 3.326836 TCATGTCTATCGGTGTTGCAA 57.673 42.857 0.00 0.00 0.00 4.08
2859 3189 4.024387 GTCTATCGGTGTTGCAAAAACTCA 60.024 41.667 0.00 0.00 33.46 3.41
2870 3200 5.003692 TGCAAAAACTCAATGTGCTACAA 57.996 34.783 0.00 0.00 36.18 2.41
2926 3888 2.086869 AGAAGCACGCATACTGCAATT 58.913 42.857 0.00 0.00 45.36 2.32
2929 3891 1.811965 AGCACGCATACTGCAATTGAA 59.188 42.857 10.34 0.00 45.36 2.69
2943 3905 6.810182 ACTGCAATTGAAATGAGTTATGAAGC 59.190 34.615 10.34 0.00 0.00 3.86
2949 3911 4.631377 TGAAATGAGTTATGAAGCCACTCG 59.369 41.667 0.00 0.00 39.97 4.18
2984 3946 2.229792 GTTCCAACATTCAGCTCCACA 58.770 47.619 0.00 0.00 0.00 4.17
2995 3957 2.695666 TCAGCTCCACAGATAACTAGCC 59.304 50.000 0.00 0.00 0.00 3.93
2996 3958 2.697751 CAGCTCCACAGATAACTAGCCT 59.302 50.000 0.00 0.00 0.00 4.58
2997 3959 2.962421 AGCTCCACAGATAACTAGCCTC 59.038 50.000 0.00 0.00 0.00 4.70
2998 3960 2.036604 GCTCCACAGATAACTAGCCTCC 59.963 54.545 0.00 0.00 0.00 4.30
2999 3961 3.571590 CTCCACAGATAACTAGCCTCCT 58.428 50.000 0.00 0.00 0.00 3.69
3000 3962 3.300388 TCCACAGATAACTAGCCTCCTG 58.700 50.000 0.00 0.00 0.00 3.86
3001 3963 2.224161 CCACAGATAACTAGCCTCCTGC 60.224 54.545 0.00 0.00 41.71 4.85
3012 3974 4.093291 CTCCTGCGCTCCTTGCCT 62.093 66.667 9.73 0.00 38.78 4.75
3013 3975 3.618780 CTCCTGCGCTCCTTGCCTT 62.619 63.158 9.73 0.00 38.78 4.35
3014 3976 3.130160 CCTGCGCTCCTTGCCTTC 61.130 66.667 9.73 0.00 38.78 3.46
3015 3977 2.046507 CTGCGCTCCTTGCCTTCT 60.047 61.111 9.73 0.00 38.78 2.85
3016 3978 1.673665 CTGCGCTCCTTGCCTTCTT 60.674 57.895 9.73 0.00 38.78 2.52
3017 3979 1.228245 TGCGCTCCTTGCCTTCTTT 60.228 52.632 9.73 0.00 38.78 2.52
3018 3980 1.211190 GCGCTCCTTGCCTTCTTTG 59.789 57.895 0.00 0.00 38.78 2.77
3019 3981 1.211190 CGCTCCTTGCCTTCTTTGC 59.789 57.895 0.00 0.00 38.78 3.68
3020 3982 1.518056 CGCTCCTTGCCTTCTTTGCA 61.518 55.000 0.00 0.00 38.78 4.08
3021 3983 0.675633 GCTCCTTGCCTTCTTTGCAA 59.324 50.000 0.00 0.00 45.83 4.08
3028 3990 3.715628 TGCCTTCTTTGCAAACTTCTC 57.284 42.857 8.05 0.00 35.40 2.87
3029 3991 3.023119 TGCCTTCTTTGCAAACTTCTCA 58.977 40.909 8.05 1.38 35.40 3.27
3030 3992 3.067180 TGCCTTCTTTGCAAACTTCTCAG 59.933 43.478 8.05 0.00 35.40 3.35
3031 3993 3.551659 GCCTTCTTTGCAAACTTCTCAGG 60.552 47.826 8.05 8.21 0.00 3.86
3032 3994 3.633986 CCTTCTTTGCAAACTTCTCAGGT 59.366 43.478 8.05 0.00 0.00 4.00
3033 3995 4.261363 CCTTCTTTGCAAACTTCTCAGGTC 60.261 45.833 8.05 0.00 0.00 3.85
3034 3996 4.156455 TCTTTGCAAACTTCTCAGGTCT 57.844 40.909 8.05 0.00 0.00 3.85
3035 3997 4.130118 TCTTTGCAAACTTCTCAGGTCTC 58.870 43.478 8.05 0.00 0.00 3.36
3036 3998 3.558931 TTGCAAACTTCTCAGGTCTCA 57.441 42.857 0.00 0.00 0.00 3.27
3037 3999 3.117491 TGCAAACTTCTCAGGTCTCAG 57.883 47.619 0.00 0.00 0.00 3.35
3100 4062 0.736325 CAGGTCTTCGTTGTAGCCCG 60.736 60.000 0.00 0.00 0.00 6.13
3127 4089 4.341235 CACCAATCACGACCTCTATTCCTA 59.659 45.833 0.00 0.00 0.00 2.94
3222 4184 3.763097 CAAGATTGCAATCGGTTAGCA 57.237 42.857 28.88 2.05 40.35 3.49
3266 4230 0.746204 ATGACCAACACACGCACACA 60.746 50.000 0.00 0.00 0.00 3.72
3271 4235 1.465837 CAACACACGCACACATTGAC 58.534 50.000 0.00 0.00 0.00 3.18
3316 4281 6.349300 TCTATATCCAGTTTCTTGAGTTGCC 58.651 40.000 0.00 0.00 0.00 4.52
3351 4316 8.602328 GTCTGAAACTCATCAGTAGAAATCATG 58.398 37.037 4.41 0.00 45.65 3.07
3393 4358 5.633830 AGGTCATTACTGAACAATGCAAG 57.366 39.130 0.54 0.00 41.89 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.352715 GGTTCTTGTTGGTTATGCTGCC 60.353 50.000 0.00 0.00 0.00 4.85
320 521 0.829333 TCCTCTGCCTCAGATTCTGC 59.171 55.000 8.89 0.00 39.92 4.26
341 579 0.820871 GCACCAAACACCAGGTCAAA 59.179 50.000 0.00 0.00 35.52 2.69
378 616 3.733960 CACCGACGAGCACGAGGA 61.734 66.667 22.96 0.00 42.66 3.71
416 654 1.153369 CCCGGATTGTGACGAGCAT 60.153 57.895 0.73 0.00 0.00 3.79
441 679 2.415512 GCTCCGTTGTAGTTCCATTGAC 59.584 50.000 0.00 0.00 0.00 3.18
475 713 3.502920 TCTTCGAGCTTTGTTCGATCTC 58.497 45.455 7.27 0.00 43.81 2.75
563 808 3.672295 CTTCTCCCTCCGCCACTGC 62.672 68.421 0.00 0.00 0.00 4.40
564 809 2.232298 GACTTCTCCCTCCGCCACTG 62.232 65.000 0.00 0.00 0.00 3.66
565 810 1.985116 GACTTCTCCCTCCGCCACT 60.985 63.158 0.00 0.00 0.00 4.00
566 811 2.579738 GACTTCTCCCTCCGCCAC 59.420 66.667 0.00 0.00 0.00 5.01
579 824 4.321230 GGTTGATTCGCTTTCAATGGACTT 60.321 41.667 0.00 0.00 35.68 3.01
580 825 3.191371 GGTTGATTCGCTTTCAATGGACT 59.809 43.478 0.00 0.00 35.68 3.85
581 826 3.191371 AGGTTGATTCGCTTTCAATGGAC 59.809 43.478 0.00 0.00 35.68 4.02
582 827 3.191162 CAGGTTGATTCGCTTTCAATGGA 59.809 43.478 0.00 0.00 35.68 3.41
583 828 3.057315 ACAGGTTGATTCGCTTTCAATGG 60.057 43.478 0.00 0.00 35.68 3.16
584 829 3.916172 CACAGGTTGATTCGCTTTCAATG 59.084 43.478 0.00 0.00 35.68 2.82
585 830 3.057315 CCACAGGTTGATTCGCTTTCAAT 60.057 43.478 0.00 0.00 35.68 2.57
586 831 2.293122 CCACAGGTTGATTCGCTTTCAA 59.707 45.455 0.00 0.00 0.00 2.69
587 832 1.879380 CCACAGGTTGATTCGCTTTCA 59.121 47.619 0.00 0.00 0.00 2.69
588 833 1.880027 ACCACAGGTTGATTCGCTTTC 59.120 47.619 0.00 0.00 27.29 2.62
589 834 1.981256 ACCACAGGTTGATTCGCTTT 58.019 45.000 0.00 0.00 27.29 3.51
590 835 1.981256 AACCACAGGTTGATTCGCTT 58.019 45.000 0.00 0.00 45.07 4.68
591 836 3.725754 AACCACAGGTTGATTCGCT 57.274 47.368 0.00 0.00 45.07 4.93
600 845 2.158667 CCTAACCAACTCAACCACAGGT 60.159 50.000 0.00 0.00 37.65 4.00
601 846 2.158667 ACCTAACCAACTCAACCACAGG 60.159 50.000 0.00 0.00 0.00 4.00
602 847 2.878406 CACCTAACCAACTCAACCACAG 59.122 50.000 0.00 0.00 0.00 3.66
603 848 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
604 849 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
605 850 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
606 851 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
607 852 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
608 853 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
609 854 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
610 855 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
611 856 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
612 857 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
613 858 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
614 859 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
615 860 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
616 861 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
631 876 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
632 877 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
642 887 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
647 892 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
648 893 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
649 894 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
650 895 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
651 896 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
652 897 0.674581 CTGCGAGCACCAGGATTTGA 60.675 55.000 0.00 0.00 0.00 2.69
653 898 0.957395 ACTGCGAGCACCAGGATTTG 60.957 55.000 0.00 0.00 34.65 2.32
654 899 0.613260 TACTGCGAGCACCAGGATTT 59.387 50.000 0.00 0.00 34.65 2.17
655 900 0.833287 ATACTGCGAGCACCAGGATT 59.167 50.000 0.00 0.00 29.56 3.01
656 901 0.833287 AATACTGCGAGCACCAGGAT 59.167 50.000 0.00 0.00 35.39 3.24
657 902 0.175760 GAATACTGCGAGCACCAGGA 59.824 55.000 0.00 0.00 34.65 3.86
658 903 0.811616 GGAATACTGCGAGCACCAGG 60.812 60.000 0.00 0.00 34.65 4.45
659 904 0.176680 AGGAATACTGCGAGCACCAG 59.823 55.000 0.00 0.00 36.41 4.00
660 905 0.108186 CAGGAATACTGCGAGCACCA 60.108 55.000 0.00 0.00 40.97 4.17
661 906 2.682893 CAGGAATACTGCGAGCACC 58.317 57.895 0.00 0.00 40.97 5.01
678 923 5.449862 CGCCGGAAATCCTGAAATAAATTCA 60.450 40.000 5.05 0.00 45.71 2.57
679 924 4.976116 CGCCGGAAATCCTGAAATAAATTC 59.024 41.667 5.05 0.00 38.60 2.17
680 925 4.642885 TCGCCGGAAATCCTGAAATAAATT 59.357 37.500 5.05 0.00 0.00 1.82
681 926 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
682 927 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
683 928 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
684 929 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
685 930 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
686 931 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
687 932 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
688 933 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
689 934 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
690 935 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
701 946 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
702 947 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
703 948 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
704 949 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
705 950 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
706 951 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
707 952 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
708 953 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
709 954 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
710 955 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
711 956 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
712 957 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
713 958 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
734 979 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
735 980 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
748 993 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
749 994 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
750 995 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
751 996 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
752 997 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
753 998 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
754 999 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
755 1000 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
756 1001 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
757 1002 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
758 1003 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
759 1004 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
760 1005 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
761 1006 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
762 1007 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
763 1008 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
764 1009 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
765 1010 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
766 1011 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
767 1012 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
768 1013 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
769 1014 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
770 1015 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
771 1016 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
772 1017 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
773 1018 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
774 1019 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
775 1020 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
776 1021 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
777 1022 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
778 1023 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
779 1024 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
780 1025 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
781 1026 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
782 1027 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
783 1028 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
784 1029 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
785 1030 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
786 1031 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
787 1032 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
788 1033 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
789 1034 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
790 1035 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
791 1036 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
792 1037 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
793 1038 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
794 1039 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
795 1040 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
796 1041 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
797 1042 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
798 1043 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
799 1044 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
800 1045 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
801 1046 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
802 1047 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
803 1048 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
804 1049 0.043485 TGCACACCCTACCCCTATGA 59.957 55.000 0.00 0.00 0.00 2.15
805 1050 1.140312 ATGCACACCCTACCCCTATG 58.860 55.000 0.00 0.00 0.00 2.23
806 1051 1.140312 CATGCACACCCTACCCCTAT 58.860 55.000 0.00 0.00 0.00 2.57
807 1052 1.632018 GCATGCACACCCTACCCCTA 61.632 60.000 14.21 0.00 0.00 3.53
808 1053 2.983879 GCATGCACACCCTACCCCT 61.984 63.158 14.21 0.00 0.00 4.79
809 1054 2.440247 GCATGCACACCCTACCCC 60.440 66.667 14.21 0.00 0.00 4.95
810 1055 2.824041 CGCATGCACACCCTACCC 60.824 66.667 19.57 0.00 0.00 3.69
811 1056 2.046314 ACGCATGCACACCCTACC 60.046 61.111 19.57 0.00 0.00 3.18
812 1057 3.177600 CACGCATGCACACCCTAC 58.822 61.111 19.57 0.00 0.00 3.18
822 1067 1.643292 CCCTATGAACGCACGCATG 59.357 57.895 0.00 0.00 0.00 4.06
823 1068 1.523711 CCCCTATGAACGCACGCAT 60.524 57.895 0.00 0.00 0.00 4.73
824 1069 2.125310 CCCCTATGAACGCACGCA 60.125 61.111 0.00 0.00 0.00 5.24
825 1070 2.125269 ACCCCTATGAACGCACGC 60.125 61.111 0.00 0.00 0.00 5.34
826 1071 0.806102 CTCACCCCTATGAACGCACG 60.806 60.000 0.00 0.00 0.00 5.34
827 1072 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
828 1073 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
829 1074 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
830 1075 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
831 1076 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
832 1077 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
833 1078 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
834 1079 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
835 1080 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
836 1081 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
837 1082 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
838 1083 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
839 1084 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
840 1085 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
841 1086 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
842 1087 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
843 1088 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
844 1089 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
845 1090 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
846 1091 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
847 1092 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
848 1093 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
849 1094 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
850 1095 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
854 1099 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
855 1100 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
856 1101 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
857 1102 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
858 1103 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
859 1104 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
860 1105 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
861 1106 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
862 1107 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
863 1108 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
864 1109 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
865 1110 1.457303 CTTCAGTACAGACACAAGCGC 59.543 52.381 0.00 0.00 0.00 5.92
866 1111 2.061773 CCTTCAGTACAGACACAAGCG 58.938 52.381 0.00 0.00 0.00 4.68
867 1112 3.060602 GACCTTCAGTACAGACACAAGC 58.939 50.000 0.00 0.00 0.00 4.01
868 1113 4.322080 TGACCTTCAGTACAGACACAAG 57.678 45.455 0.00 0.00 0.00 3.16
869 1114 4.746535 TTGACCTTCAGTACAGACACAA 57.253 40.909 0.00 0.00 0.00 3.33
870 1115 4.746535 TTTGACCTTCAGTACAGACACA 57.253 40.909 0.00 0.00 0.00 3.72
921 1166 8.883731 GGATTCAGATAATTCAGAACGAGAAAA 58.116 33.333 0.00 0.00 31.15 2.29
922 1167 7.495934 GGGATTCAGATAATTCAGAACGAGAAA 59.504 37.037 0.00 0.00 31.15 2.52
923 1168 6.986817 GGGATTCAGATAATTCAGAACGAGAA 59.013 38.462 0.00 0.00 31.15 2.87
924 1169 6.098266 TGGGATTCAGATAATTCAGAACGAGA 59.902 38.462 0.00 0.00 31.15 4.04
925 1170 6.283694 TGGGATTCAGATAATTCAGAACGAG 58.716 40.000 0.00 0.00 31.15 4.18
926 1171 6.233905 TGGGATTCAGATAATTCAGAACGA 57.766 37.500 0.00 0.00 31.15 3.85
927 1172 6.925610 TTGGGATTCAGATAATTCAGAACG 57.074 37.500 0.00 0.00 31.15 3.95
940 1185 6.770746 AGATGAGACATTTTTGGGATTCAG 57.229 37.500 0.00 0.00 0.00 3.02
1094 1339 4.363990 CGTGCGCTGTGAGGAGGT 62.364 66.667 9.73 0.00 0.00 3.85
1153 1398 1.119574 AGGAGTAGCGTGTGGGTGTT 61.120 55.000 0.00 0.00 0.00 3.32
1167 1412 1.597461 GGAGTAAGCGGCAAGGAGT 59.403 57.895 1.45 0.00 0.00 3.85
1179 1424 2.707849 GCACTCGAGGCGGGAGTAA 61.708 63.158 18.41 0.00 42.63 2.24
1236 1481 4.824515 ACGGAGAGGCGGAGGGAG 62.825 72.222 0.00 0.00 0.00 4.30
1473 1718 2.477825 CCGTCCATCAGAGCATTGTAG 58.522 52.381 0.00 0.00 0.00 2.74
1630 1875 2.370445 CCTCGCCCCTCATCCTGTT 61.370 63.158 0.00 0.00 0.00 3.16
1654 1899 0.322816 AATGCAACATCGTCTGGCCT 60.323 50.000 3.32 0.00 0.00 5.19
1723 1968 2.877154 ACATACTCATGGACCTCCCT 57.123 50.000 0.00 0.00 36.39 4.20
1971 2216 3.958798 CGATCAAGACCCCTAAGAAGGTA 59.041 47.826 0.00 0.00 41.89 3.08
1986 2231 1.331756 GTATGGCTGCAACCGATCAAG 59.668 52.381 0.85 0.00 0.00 3.02
2145 2390 2.531206 CCTTTCGTCGACATCTTCTCC 58.469 52.381 17.16 0.00 0.00 3.71
2358 2603 4.256920 CAACATTTCTCCTACCAGTCCTG 58.743 47.826 0.00 0.00 0.00 3.86
2401 2646 6.779860 ACCAACTCAGTATGTCTTATTGGTT 58.220 36.000 0.00 0.00 44.73 3.67
2523 2768 6.678878 TCGTCACTATCTAATCATTGCTACC 58.321 40.000 0.00 0.00 0.00 3.18
2611 2857 3.306433 GGTCTTGGACTCTTGGAGAAGAC 60.306 52.174 14.08 14.08 38.84 3.01
2648 2894 4.517287 GTTTTGCAGCATAAAGTTTGCAC 58.483 39.130 0.00 0.00 45.29 4.57
2710 2956 5.079643 ACTGCTAACCCATTTTGACTTGAT 58.920 37.500 0.00 0.00 0.00 2.57
2762 3028 1.135402 CAAAGTATGCGGCAGGGAAAC 60.135 52.381 9.25 1.70 0.00 2.78
2775 3041 7.321153 AGTGTCGCTGATTTAGTACAAAGTAT 58.679 34.615 0.00 0.00 0.00 2.12
2776 3042 6.684686 AGTGTCGCTGATTTAGTACAAAGTA 58.315 36.000 0.00 0.00 0.00 2.24
2782 3110 7.411588 CCAAAGTAAGTGTCGCTGATTTAGTAC 60.412 40.741 0.00 0.00 0.00 2.73
2808 3138 1.900545 CTCCCTCCGTCCCAAAGTCC 61.901 65.000 0.00 0.00 0.00 3.85
2809 3139 1.192803 ACTCCCTCCGTCCCAAAGTC 61.193 60.000 0.00 0.00 0.00 3.01
2810 3140 1.152096 ACTCCCTCCGTCCCAAAGT 60.152 57.895 0.00 0.00 0.00 2.66
2811 3141 1.296715 CACTCCCTCCGTCCCAAAG 59.703 63.158 0.00 0.00 0.00 2.77
2812 3142 2.221299 CCACTCCCTCCGTCCCAAA 61.221 63.158 0.00 0.00 0.00 3.28
2813 3143 2.606519 CCACTCCCTCCGTCCCAA 60.607 66.667 0.00 0.00 0.00 4.12
2814 3144 3.477956 AACCACTCCCTCCGTCCCA 62.478 63.158 0.00 0.00 0.00 4.37
2815 3145 2.606826 AACCACTCCCTCCGTCCC 60.607 66.667 0.00 0.00 0.00 4.46
2816 3146 1.265454 ATGAACCACTCCCTCCGTCC 61.265 60.000 0.00 0.00 0.00 4.79
2817 3147 0.108138 CATGAACCACTCCCTCCGTC 60.108 60.000 0.00 0.00 0.00 4.79
2829 3159 2.351726 GCAACACCGATAGACATGAACC 59.648 50.000 0.00 0.00 39.76 3.62
2835 3165 3.880490 AGTTTTTGCAACACCGATAGACA 59.120 39.130 0.00 0.00 39.76 3.41
2852 3182 5.590530 TGGTTTGTAGCACATTGAGTTTT 57.409 34.783 0.00 0.00 0.00 2.43
2926 3888 4.631377 CGAGTGGCTTCATAACTCATTTCA 59.369 41.667 3.26 0.00 40.29 2.69
2929 3891 4.207891 ACGAGTGGCTTCATAACTCATT 57.792 40.909 0.00 0.00 40.29 2.57
2984 3946 0.676736 GCGCAGGAGGCTAGTTATCT 59.323 55.000 0.30 0.00 41.67 1.98
3001 3963 3.017368 TTGCAAAGAAGGCAAGGAGCG 62.017 52.381 0.00 0.00 45.57 5.03
3002 3964 0.675633 TTGCAAAGAAGGCAAGGAGC 59.324 50.000 0.00 0.00 45.57 4.70
3008 3970 3.023119 TGAGAAGTTTGCAAAGAAGGCA 58.977 40.909 13.26 6.02 40.00 4.75
3009 3971 3.551659 CCTGAGAAGTTTGCAAAGAAGGC 60.552 47.826 13.26 0.00 0.00 4.35
3010 3972 3.633986 ACCTGAGAAGTTTGCAAAGAAGG 59.366 43.478 13.26 14.44 0.00 3.46
3011 3973 4.578105 AGACCTGAGAAGTTTGCAAAGAAG 59.422 41.667 13.26 4.19 0.00 2.85
3012 3974 4.526970 AGACCTGAGAAGTTTGCAAAGAA 58.473 39.130 13.26 0.00 0.00 2.52
3013 3975 4.130118 GAGACCTGAGAAGTTTGCAAAGA 58.870 43.478 13.26 0.00 0.00 2.52
3014 3976 3.879295 TGAGACCTGAGAAGTTTGCAAAG 59.121 43.478 13.26 0.36 0.00 2.77
3015 3977 3.879295 CTGAGACCTGAGAAGTTTGCAAA 59.121 43.478 8.05 8.05 0.00 3.68
3016 3978 3.470709 CTGAGACCTGAGAAGTTTGCAA 58.529 45.455 0.00 0.00 0.00 4.08
3017 3979 2.224378 CCTGAGACCTGAGAAGTTTGCA 60.224 50.000 0.00 0.00 0.00 4.08
3018 3980 2.224402 ACCTGAGACCTGAGAAGTTTGC 60.224 50.000 0.00 0.00 0.00 3.68
3019 3981 3.556004 GGACCTGAGACCTGAGAAGTTTG 60.556 52.174 0.00 0.00 0.00 2.93
3020 3982 2.635427 GGACCTGAGACCTGAGAAGTTT 59.365 50.000 0.00 0.00 0.00 2.66
3021 3983 2.158234 AGGACCTGAGACCTGAGAAGTT 60.158 50.000 0.00 0.00 36.75 2.66
3022 3984 1.431243 AGGACCTGAGACCTGAGAAGT 59.569 52.381 0.00 0.00 36.75 3.01
3023 3985 2.230130 AGGACCTGAGACCTGAGAAG 57.770 55.000 0.00 0.00 36.75 2.85
3029 3991 3.386237 GCGCAGGACCTGAGACCT 61.386 66.667 27.41 0.00 38.85 3.85
3030 3992 3.363844 GAGCGCAGGACCTGAGACC 62.364 68.421 27.41 14.14 33.20 3.85
3031 3993 2.183046 GAGCGCAGGACCTGAGAC 59.817 66.667 27.41 17.95 33.20 3.36
3032 3994 3.071206 GGAGCGCAGGACCTGAGA 61.071 66.667 27.41 0.00 33.20 3.27
3033 3995 2.654079 AAGGAGCGCAGGACCTGAG 61.654 63.158 26.25 22.99 34.50 3.35
3034 3996 2.604686 AAGGAGCGCAGGACCTGA 60.605 61.111 26.25 0.00 32.44 3.86
3035 3997 2.435586 CAAGGAGCGCAGGACCTG 60.436 66.667 17.83 17.83 34.03 4.00
3036 3998 4.400961 GCAAGGAGCGCAGGACCT 62.401 66.667 11.47 9.97 35.36 3.85
3100 4062 3.314541 AGAGGTCGTGATTGGTGTAAC 57.685 47.619 0.00 0.00 0.00 2.50
3127 4089 6.201425 CAGTTTATGTGCTGCTTGTTTTGAAT 59.799 34.615 0.00 0.00 0.00 2.57
3214 4176 3.745975 TGATTCTCAACAGTTGCTAACCG 59.254 43.478 8.58 0.00 0.00 4.44
3253 4215 1.063912 CAGTCAATGTGTGCGTGTGTT 59.936 47.619 0.00 0.00 0.00 3.32
3316 4281 2.575532 TGAGTTTCAGACAAAGCCCTG 58.424 47.619 0.00 0.00 0.00 4.45
3351 4316 5.555017 ACCTATATGTTCTCATGACATGGC 58.445 41.667 15.37 0.00 35.70 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.