Multiple sequence alignment - TraesCS2A01G288700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G288700 chr2A 100.000 2789 0 0 1 2789 496561803 496564591 0.000000e+00 5151.0
1 TraesCS2A01G288700 chr2A 82.781 151 20 5 1125 1272 680357725 680357578 2.250000e-26 130.0
2 TraesCS2A01G288700 chr2B 94.643 2072 62 19 329 2361 435628672 435630733 0.000000e+00 3166.0
3 TraesCS2A01G288700 chr2B 89.220 436 31 7 2357 2786 435630824 435631249 5.290000e-147 531.0
4 TraesCS2A01G288700 chr2B 92.105 190 10 5 20 207 435628278 435628464 2.130000e-66 263.0
5 TraesCS2A01G288700 chr2B 80.791 177 26 7 1125 1297 640765313 640765141 6.270000e-27 132.0
6 TraesCS2A01G288700 chr2D 93.264 1722 72 19 213 1897 367088231 367089945 0.000000e+00 2497.0
7 TraesCS2A01G288700 chr2D 88.889 441 35 9 2357 2789 367093879 367094313 5.290000e-147 531.0
8 TraesCS2A01G288700 chr2D 94.357 319 5 5 1881 2191 367089957 367090270 6.990000e-131 477.0
9 TraesCS2A01G288700 chr2D 95.213 188 9 0 20 207 367087963 367088150 5.840000e-77 298.0
10 TraesCS2A01G288700 chr2D 91.111 180 10 4 2187 2361 367093609 367093787 3.590000e-59 239.0
11 TraesCS2A01G288700 chr2D 86.705 173 19 4 1129 1299 67496767 67496597 3.670000e-44 189.0
12 TraesCS2A01G288700 chr2D 82.667 150 22 3 1125 1272 538055273 538055126 2.250000e-26 130.0
13 TraesCS2A01G288700 chr7A 82.500 160 21 7 2620 2775 515032997 515032841 1.740000e-27 134.0
14 TraesCS2A01G288700 chr6B 82.857 140 24 0 1122 1261 239729257 239729396 2.920000e-25 126.0
15 TraesCS2A01G288700 chr6B 77.099 131 18 8 2654 2776 44077854 44077980 6.450000e-07 65.8
16 TraesCS2A01G288700 chr6A 82.857 140 24 0 1122 1261 183188183 183188322 2.920000e-25 126.0
17 TraesCS2A01G288700 chr7D 80.105 191 17 9 2594 2776 478593817 478593994 3.770000e-24 122.0
18 TraesCS2A01G288700 chr6D 82.609 138 24 0 1124 1261 139916322 139916459 3.770000e-24 122.0
19 TraesCS2A01G288700 chr3D 79.618 157 25 3 2619 2774 508389156 508389306 3.800000e-19 106.0
20 TraesCS2A01G288700 chr3D 92.453 53 4 0 2722 2774 299626592 299626644 2.980000e-10 76.8
21 TraesCS2A01G288700 chr1B 84.762 105 12 4 2671 2774 624735674 624735775 4.910000e-18 102.0
22 TraesCS2A01G288700 chr4B 77.778 171 30 5 2613 2782 424692978 424692815 6.360000e-17 99.0
23 TraesCS2A01G288700 chr4B 77.576 165 31 5 2609 2772 613384478 613384319 8.220000e-16 95.3
24 TraesCS2A01G288700 chr3A 92.000 50 4 0 2725 2774 436455948 436455899 1.390000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G288700 chr2A 496561803 496564591 2788 False 5151.0 5151 100.000000 1 2789 1 chr2A.!!$F1 2788
1 TraesCS2A01G288700 chr2B 435628278 435631249 2971 False 1320.0 3166 91.989333 20 2786 3 chr2B.!!$F1 2766
2 TraesCS2A01G288700 chr2D 367087963 367094313 6350 False 808.4 2497 92.566800 20 2789 5 chr2D.!!$F1 2769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 941 0.106419 ACCCTTTTCACTTTCCCGCA 60.106 50.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2636 6256 0.530288 TCAGCGGATGACATTCGTGA 59.47 50.0 17.27 15.29 31.12 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 170 6.822442 ACCAAACCAAATTAACCAAAGGTAG 58.178 36.000 0.00 0.00 33.12 3.18
170 171 6.384595 ACCAAACCAAATTAACCAAAGGTAGT 59.615 34.615 0.00 0.00 33.12 2.73
176 177 7.501892 ACCAAATTAACCAAAGGTAGTACGAAA 59.498 33.333 0.00 0.00 33.12 3.46
200 201 3.737850 AGCATAGCTCTGATTGTTAGCC 58.262 45.455 2.78 0.00 36.92 3.93
207 208 5.423886 AGCTCTGATTGTTAGCCTTCTTAC 58.576 41.667 0.00 0.00 36.92 2.34
208 209 5.046304 AGCTCTGATTGTTAGCCTTCTTACA 60.046 40.000 0.00 0.00 36.92 2.41
209 210 5.293079 GCTCTGATTGTTAGCCTTCTTACAG 59.707 44.000 0.00 0.00 33.94 2.74
210 211 6.360370 TCTGATTGTTAGCCTTCTTACAGT 57.640 37.500 0.00 0.00 33.94 3.55
214 215 4.267349 TGTTAGCCTTCTTACAGTGGAC 57.733 45.455 0.00 0.00 29.55 4.02
215 216 3.901844 TGTTAGCCTTCTTACAGTGGACT 59.098 43.478 0.00 0.00 29.55 3.85
223 300 4.174411 TCTTACAGTGGACTGATGTTCG 57.826 45.455 13.74 0.00 46.59 3.95
233 310 4.279922 TGGACTGATGTTCGTTTAGTGAGA 59.720 41.667 0.00 0.00 0.00 3.27
234 311 5.221362 TGGACTGATGTTCGTTTAGTGAGAA 60.221 40.000 0.00 0.00 0.00 2.87
235 312 5.694910 GGACTGATGTTCGTTTAGTGAGAAA 59.305 40.000 0.00 0.00 0.00 2.52
236 313 6.202188 GGACTGATGTTCGTTTAGTGAGAAAA 59.798 38.462 0.00 0.00 0.00 2.29
237 314 7.254658 GGACTGATGTTCGTTTAGTGAGAAAAA 60.255 37.037 0.00 0.00 0.00 1.94
274 351 1.604438 CGAAGGTGTCCGTGTCAATCA 60.604 52.381 0.00 0.00 0.00 2.57
275 352 2.699954 GAAGGTGTCCGTGTCAATCAT 58.300 47.619 0.00 0.00 0.00 2.45
288 365 6.365789 CCGTGTCAATCATAAAATGTTTTGCT 59.634 34.615 1.16 0.00 0.00 3.91
289 366 7.221970 CGTGTCAATCATAAAATGTTTTGCTG 58.778 34.615 1.16 0.11 0.00 4.41
302 379 4.905429 TGTTTTGCTGGCTTAGTATCTCA 58.095 39.130 0.00 0.00 0.00 3.27
303 380 5.312895 TGTTTTGCTGGCTTAGTATCTCAA 58.687 37.500 0.00 0.00 0.00 3.02
305 383 6.072508 TGTTTTGCTGGCTTAGTATCTCAAAG 60.073 38.462 0.00 0.00 0.00 2.77
306 384 5.420725 TTGCTGGCTTAGTATCTCAAAGA 57.579 39.130 0.00 0.00 0.00 2.52
314 392 6.147492 GGCTTAGTATCTCAAAGATGCTCATG 59.853 42.308 10.28 4.83 42.80 3.07
315 393 6.927936 GCTTAGTATCTCAAAGATGCTCATGA 59.072 38.462 10.28 0.00 42.80 3.07
318 396 5.601729 AGTATCTCAAAGATGCTCATGAGGA 59.398 40.000 23.89 22.02 42.80 3.71
325 403 8.198807 TCAAAGATGCTCATGAGGATAAGATA 57.801 34.615 27.40 12.17 39.68 1.98
326 404 8.093307 TCAAAGATGCTCATGAGGATAAGATAC 58.907 37.037 27.40 14.94 39.68 2.24
327 405 7.550597 AAGATGCTCATGAGGATAAGATACA 57.449 36.000 27.40 12.25 39.68 2.29
331 426 7.781324 TGCTCATGAGGATAAGATACATGTA 57.219 36.000 23.89 8.27 0.00 2.29
350 445 8.441311 ACATGTATTCATAGGGATGAGTGTAT 57.559 34.615 0.00 0.00 43.03 2.29
351 446 8.316946 ACATGTATTCATAGGGATGAGTGTATG 58.683 37.037 0.00 0.00 43.03 2.39
353 448 7.670364 TGTATTCATAGGGATGAGTGTATGTG 58.330 38.462 0.00 0.00 43.03 3.21
354 449 4.607293 TCATAGGGATGAGTGTATGTGC 57.393 45.455 0.00 0.00 37.15 4.57
356 451 4.408596 TCATAGGGATGAGTGTATGTGCAA 59.591 41.667 0.00 0.00 37.15 4.08
363 463 6.280643 GGATGAGTGTATGTGCAAGTATGTA 58.719 40.000 0.00 0.00 0.00 2.29
377 477 6.652900 TGCAAGTATGTAAGCATCTGTGTTTA 59.347 34.615 0.00 0.00 36.58 2.01
382 482 8.482943 AGTATGTAAGCATCTGTGTTTATACCA 58.517 33.333 0.00 0.00 34.27 3.25
387 487 9.104965 GTAAGCATCTGTGTTTATACCATGTTA 57.895 33.333 0.00 0.00 34.27 2.41
389 489 8.213518 AGCATCTGTGTTTATACCATGTTAAG 57.786 34.615 0.00 0.00 0.00 1.85
390 490 8.046708 AGCATCTGTGTTTATACCATGTTAAGA 58.953 33.333 0.00 0.00 0.00 2.10
391 491 8.673711 GCATCTGTGTTTATACCATGTTAAGAA 58.326 33.333 0.00 0.00 0.00 2.52
431 534 0.461548 TAAGTGGAGGCGCATGAGAG 59.538 55.000 10.83 0.00 0.00 3.20
450 553 9.265901 CATGAGAGGACGAATTAATATTGTTCT 57.734 33.333 0.00 0.00 0.00 3.01
466 569 9.860898 AATATTGTTCTCAAGATTTAACTTGCC 57.139 29.630 0.00 0.00 40.95 4.52
834 941 0.106419 ACCCTTTTCACTTTCCCGCA 60.106 50.000 0.00 0.00 0.00 5.69
993 1115 4.489810 CTCTGTTTTGATCACGAGCTAGT 58.510 43.478 0.00 0.00 0.00 2.57
994 1116 5.638596 TCTGTTTTGATCACGAGCTAGTA 57.361 39.130 0.00 0.00 0.00 1.82
995 1117 5.641709 TCTGTTTTGATCACGAGCTAGTAG 58.358 41.667 0.00 0.00 0.00 2.57
1044 1166 0.825840 CCTCATCCTCCTCGTCCTCC 60.826 65.000 0.00 0.00 0.00 4.30
2112 2281 3.181470 TGCTGGCGCTTCAGTGTAATATA 60.181 43.478 7.64 0.00 37.12 0.86
2113 2282 3.997021 GCTGGCGCTTCAGTGTAATATAT 59.003 43.478 7.64 0.00 37.12 0.86
2115 2284 5.637810 GCTGGCGCTTCAGTGTAATATATTA 59.362 40.000 7.64 0.81 37.12 0.98
2116 2285 6.313905 GCTGGCGCTTCAGTGTAATATATTAT 59.686 38.462 7.64 0.00 37.12 1.28
2117 2286 7.464710 GCTGGCGCTTCAGTGTAATATATTATC 60.465 40.741 7.64 5.71 37.12 1.75
2118 2287 6.816640 TGGCGCTTCAGTGTAATATATTATCC 59.183 38.462 7.64 3.03 0.00 2.59
2119 2288 6.816640 GGCGCTTCAGTGTAATATATTATCCA 59.183 38.462 7.64 0.69 0.00 3.41
2121 2290 8.331022 GCGCTTCAGTGTAATATATTATCCATG 58.669 37.037 8.40 6.16 0.00 3.66
2122 2291 9.371136 CGCTTCAGTGTAATATATTATCCATGT 57.629 33.333 8.40 0.00 0.00 3.21
2240 5754 3.834610 ACGGCGTATAAGTCTCATATGC 58.165 45.455 12.58 0.00 39.25 3.14
2314 5828 5.109210 CACTCATATTATGGACACACACGT 58.891 41.667 3.89 0.00 0.00 4.49
2340 5854 4.288626 ACCTGCACACCCTATTTCTAAGAA 59.711 41.667 0.00 0.00 0.00 2.52
2346 5863 6.238648 CACACCCTATTTCTAAGAACACCTT 58.761 40.000 0.00 0.00 38.87 3.50
2374 5987 0.895530 TCCCGACTCATGTGAACTCC 59.104 55.000 0.94 0.00 0.00 3.85
2649 6269 4.382754 GCCAAGTTTTTCACGAATGTCATC 59.617 41.667 0.00 0.00 0.00 2.92
2652 6272 2.892373 TTTTCACGAATGTCATCCGC 57.108 45.000 0.00 0.00 0.00 5.54
2674 6294 4.512571 GCTGATGAAACTTTGCAACCAATT 59.487 37.500 0.00 0.00 0.00 2.32
2691 6311 8.341173 GCAACCAATTAAAACATTTGTCAATGA 58.659 29.630 1.97 0.00 42.35 2.57
2774 6395 0.820226 TGAGCTCGGGATCAGAACAG 59.180 55.000 0.00 0.00 32.54 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.935481 AGAGCTCTTTTACGGTACCG 57.065 50.000 32.22 32.22 46.03 4.02
1 2 5.064441 TGTTAGAGCTCTTTTACGGTACC 57.936 43.478 23.84 0.16 0.00 3.34
2 3 6.098017 ACATGTTAGAGCTCTTTTACGGTAC 58.902 40.000 23.84 8.01 0.00 3.34
3 4 6.276832 ACATGTTAGAGCTCTTTTACGGTA 57.723 37.500 23.84 0.00 0.00 4.02
4 5 5.148651 ACATGTTAGAGCTCTTTTACGGT 57.851 39.130 23.84 15.53 0.00 4.83
5 6 6.331061 ACTACATGTTAGAGCTCTTTTACGG 58.669 40.000 23.84 14.97 0.00 4.02
6 7 7.328737 ACAACTACATGTTAGAGCTCTTTTACG 59.671 37.037 23.84 10.82 37.07 3.18
7 8 8.535690 ACAACTACATGTTAGAGCTCTTTTAC 57.464 34.615 23.84 17.38 37.07 2.01
8 9 7.817962 GGACAACTACATGTTAGAGCTCTTTTA 59.182 37.037 23.84 8.75 37.07 1.52
9 10 6.651225 GGACAACTACATGTTAGAGCTCTTTT 59.349 38.462 23.84 0.00 37.07 2.27
10 11 6.166982 GGACAACTACATGTTAGAGCTCTTT 58.833 40.000 23.84 3.38 37.07 2.52
11 12 5.622460 CGGACAACTACATGTTAGAGCTCTT 60.622 44.000 23.84 4.90 37.07 2.85
12 13 4.142359 CGGACAACTACATGTTAGAGCTCT 60.142 45.833 22.17 22.17 37.07 4.09
13 14 4.106197 CGGACAACTACATGTTAGAGCTC 58.894 47.826 5.27 5.27 37.07 4.09
14 15 3.762288 TCGGACAACTACATGTTAGAGCT 59.238 43.478 2.30 0.00 37.07 4.09
15 16 4.106029 TCGGACAACTACATGTTAGAGC 57.894 45.455 2.30 0.00 37.07 4.09
16 17 5.651530 ACATCGGACAACTACATGTTAGAG 58.348 41.667 2.30 0.00 37.07 2.43
17 18 5.654603 ACATCGGACAACTACATGTTAGA 57.345 39.130 2.30 0.00 37.07 2.10
18 19 6.327154 TGTACATCGGACAACTACATGTTAG 58.673 40.000 2.30 2.15 37.07 2.34
189 190 5.012664 TCCACTGTAAGAAGGCTAACAATCA 59.987 40.000 0.00 0.00 37.43 2.57
190 191 5.351740 GTCCACTGTAAGAAGGCTAACAATC 59.648 44.000 0.00 0.00 37.43 2.67
193 194 3.901844 AGTCCACTGTAAGAAGGCTAACA 59.098 43.478 0.00 0.00 37.43 2.41
199 200 4.543590 ACATCAGTCCACTGTAAGAAGG 57.456 45.455 6.61 0.00 44.12 3.46
200 201 4.623167 CGAACATCAGTCCACTGTAAGAAG 59.377 45.833 6.61 0.00 44.12 2.85
207 208 4.150627 CACTAAACGAACATCAGTCCACTG 59.849 45.833 0.00 0.00 45.08 3.66
208 209 4.038763 TCACTAAACGAACATCAGTCCACT 59.961 41.667 0.00 0.00 0.00 4.00
209 210 4.304110 TCACTAAACGAACATCAGTCCAC 58.696 43.478 0.00 0.00 0.00 4.02
210 211 4.279922 TCTCACTAAACGAACATCAGTCCA 59.720 41.667 0.00 0.00 0.00 4.02
264 341 7.221970 CAGCAAAACATTTTATGATTGACACG 58.778 34.615 11.33 0.00 34.75 4.49
274 351 8.971073 AGATACTAAGCCAGCAAAACATTTTAT 58.029 29.630 0.00 0.00 0.00 1.40
275 352 8.348285 AGATACTAAGCCAGCAAAACATTTTA 57.652 30.769 0.00 0.00 0.00 1.52
288 365 5.129320 TGAGCATCTTTGAGATACTAAGCCA 59.871 40.000 0.00 0.00 32.12 4.75
289 366 5.605534 TGAGCATCTTTGAGATACTAAGCC 58.394 41.667 0.00 0.00 32.12 4.35
302 379 7.971201 TGTATCTTATCCTCATGAGCATCTTT 58.029 34.615 17.76 1.81 34.92 2.52
303 380 7.550597 TGTATCTTATCCTCATGAGCATCTT 57.449 36.000 17.76 2.21 34.92 2.40
305 383 7.329499 ACATGTATCTTATCCTCATGAGCATC 58.671 38.462 17.76 0.00 39.07 3.91
306 384 7.255199 ACATGTATCTTATCCTCATGAGCAT 57.745 36.000 17.76 11.07 39.07 3.79
325 403 6.753913 ACACTCATCCCTATGAATACATGT 57.246 37.500 2.69 2.69 41.57 3.21
326 404 8.316946 ACATACACTCATCCCTATGAATACATG 58.683 37.037 0.00 0.00 41.57 3.21
327 405 8.316946 CACATACACTCATCCCTATGAATACAT 58.683 37.037 0.00 0.00 41.57 2.29
331 426 5.072193 TGCACATACACTCATCCCTATGAAT 59.928 40.000 0.00 0.00 41.57 2.57
350 445 4.392754 CACAGATGCTTACATACTTGCACA 59.607 41.667 0.00 0.00 38.29 4.57
351 446 4.393062 ACACAGATGCTTACATACTTGCAC 59.607 41.667 0.00 0.00 38.29 4.57
353 448 5.551760 AACACAGATGCTTACATACTTGC 57.448 39.130 0.00 0.00 36.35 4.01
356 451 8.482943 TGGTATAAACACAGATGCTTACATACT 58.517 33.333 0.00 0.00 36.35 2.12
363 463 8.574251 TTAACATGGTATAAACACAGATGCTT 57.426 30.769 0.00 0.00 0.00 3.91
394 494 9.901172 CTCCACTTATTACTTACCTTTGGTTAT 57.099 33.333 0.00 0.00 37.09 1.89
396 496 7.173032 CCTCCACTTATTACTTACCTTTGGTT 58.827 38.462 0.00 0.00 37.09 3.67
397 497 6.718294 CCTCCACTTATTACTTACCTTTGGT 58.282 40.000 0.00 0.00 40.16 3.67
398 498 5.589050 GCCTCCACTTATTACTTACCTTTGG 59.411 44.000 0.00 0.00 0.00 3.28
399 499 5.293569 CGCCTCCACTTATTACTTACCTTTG 59.706 44.000 0.00 0.00 0.00 2.77
450 553 9.679661 TTATAGATGTGGCAAGTTAAATCTTGA 57.320 29.630 9.40 0.00 45.11 3.02
730 834 2.369600 CGTCGTTATGTGCTAGTACCG 58.630 52.381 8.60 4.89 0.00 4.02
834 941 7.394816 GGTGTTGCATGGGAGTATATATAAGT 58.605 38.462 0.00 0.00 0.00 2.24
942 1049 3.584406 AGAGACTGTGTGTGACTATGC 57.416 47.619 0.00 0.00 0.00 3.14
993 1115 6.834451 AGTAGGACGAGAAATTCATCTTCCTA 59.166 38.462 15.60 15.60 37.66 2.94
994 1116 5.659079 AGTAGGACGAGAAATTCATCTTCCT 59.341 40.000 17.03 17.03 39.15 3.36
995 1117 5.908341 AGTAGGACGAGAAATTCATCTTCC 58.092 41.667 7.10 7.10 29.82 3.46
1898 2058 3.380637 AGACGCATTATTACCACGAGACT 59.619 43.478 0.00 0.00 0.00 3.24
2035 2204 4.495844 GCACATACGAATGAGGCCTAAAAC 60.496 45.833 4.42 0.00 36.54 2.43
2040 2209 0.541392 TGCACATACGAATGAGGCCT 59.459 50.000 3.86 3.86 36.65 5.19
2119 2288 9.778741 ACGAACAGGTAAATCATCATATAACAT 57.221 29.630 0.00 0.00 0.00 2.71
2121 2290 9.864034 CAACGAACAGGTAAATCATCATATAAC 57.136 33.333 0.00 0.00 0.00 1.89
2122 2291 9.607988 ACAACGAACAGGTAAATCATCATATAA 57.392 29.630 0.00 0.00 0.00 0.98
2123 2292 9.607988 AACAACGAACAGGTAAATCATCATATA 57.392 29.630 0.00 0.00 0.00 0.86
2124 2293 8.506168 AACAACGAACAGGTAAATCATCATAT 57.494 30.769 0.00 0.00 0.00 1.78
2258 5772 6.469595 GTGTGCACGTACTATGTTTTGAAAAA 59.530 34.615 13.13 0.00 0.00 1.94
2314 5828 2.375174 AGAAATAGGGTGTGCAGGTGAA 59.625 45.455 0.00 0.00 0.00 3.18
2340 5854 3.143728 GTCGGGAACATAACAAAGGTGT 58.856 45.455 0.00 0.00 40.75 4.16
2346 5863 4.000325 CACATGAGTCGGGAACATAACAA 59.000 43.478 0.00 0.00 0.00 2.83
2456 6069 4.143543 TGAATGTCAGCTGGTGATGAAAA 58.856 39.130 15.13 0.00 40.52 2.29
2551 6171 4.906132 ATGGATGACATTCGTGAAAAACGC 60.906 41.667 0.00 0.00 40.55 4.84
2636 6256 0.530288 TCAGCGGATGACATTCGTGA 59.470 50.000 17.27 15.29 31.12 4.35
2649 6269 2.053627 GTTGCAAAGTTTCATCAGCGG 58.946 47.619 0.00 0.00 0.00 5.52
2652 6272 7.712264 TTAATTGGTTGCAAAGTTTCATCAG 57.288 32.000 0.00 0.00 0.00 2.90
2674 6294 6.988580 TGTGCCAATCATTGACAAATGTTTTA 59.011 30.769 0.00 0.00 43.21 1.52
2728 6348 6.147821 GTGAGCTCAGCTGAACAGTAAAATAA 59.852 38.462 18.89 0.00 39.88 1.40
2729 6349 5.639506 GTGAGCTCAGCTGAACAGTAAAATA 59.360 40.000 18.89 0.00 39.88 1.40
2730 6350 4.453819 GTGAGCTCAGCTGAACAGTAAAAT 59.546 41.667 18.89 0.00 39.88 1.82
2731 6351 3.809832 GTGAGCTCAGCTGAACAGTAAAA 59.190 43.478 18.89 0.00 39.88 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.