Multiple sequence alignment - TraesCS2A01G288400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G288400 chr2A 100.000 2604 0 0 1 2604 495960876 495958273 0.000000e+00 4809.0
1 TraesCS2A01G288400 chr2A 100.000 105 0 0 163 267 495960609 495960505 7.350000e-46 195.0
2 TraesCS2A01G288400 chr2A 100.000 105 0 0 268 372 495960714 495960610 7.350000e-46 195.0
3 TraesCS2A01G288400 chr2B 96.535 1905 51 4 713 2604 435158590 435156688 0.000000e+00 3138.0
4 TraesCS2A01G288400 chr2B 96.970 99 3 0 280 378 435158694 435158596 1.600000e-37 167.0
5 TraesCS2A01G288400 chr2B 96.774 93 3 0 175 267 435158694 435158602 3.470000e-34 156.0
6 TraesCS2A01G288400 chr2D 96.594 1057 26 3 708 1755 366500521 366499466 0.000000e+00 1744.0
7 TraesCS2A01G288400 chr2D 97.655 853 20 0 1752 2604 366499386 366498534 0.000000e+00 1465.0
8 TraesCS2A01G288400 chr2D 93.636 110 5 2 280 387 366500620 366500511 2.070000e-36 163.0
9 TraesCS2A01G288400 chr2D 95.699 93 4 0 175 267 366500620 366500528 1.610000e-32 150.0
10 TraesCS2A01G288400 chr5B 84.895 523 79 0 2016 2538 481143271 481142749 1.770000e-146 529.0
11 TraesCS2A01G288400 chr5D 84.704 523 80 0 2016 2538 402203920 402203398 8.260000e-145 523.0
12 TraesCS2A01G288400 chr4A 96.795 312 10 0 383 694 503416794 503417105 2.970000e-144 521.0
13 TraesCS2A01G288400 chr5A 83.939 523 84 0 2016 2538 507967960 507967438 3.870000e-138 501.0
14 TraesCS2A01G288400 chr6A 97.561 287 7 0 409 695 88271980 88272266 2.330000e-135 492.0
15 TraesCS2A01G288400 chrUn 94.872 312 16 0 384 695 65963012 65963323 3.010000e-134 488.0
16 TraesCS2A01G288400 chrUn 93.438 320 20 1 383 702 155018259 155017941 8.430000e-130 473.0
17 TraesCS2A01G288400 chrUn 93.438 320 20 1 383 702 399496886 399497204 8.430000e-130 473.0
18 TraesCS2A01G288400 chrUn 93.438 320 20 1 383 702 463429127 463429445 8.430000e-130 473.0
19 TraesCS2A01G288400 chr7B 93.730 319 20 0 383 701 641810434 641810116 1.810000e-131 479.0
20 TraesCS2A01G288400 chr3B 93.438 320 20 1 383 702 793468048 793467730 8.430000e-130 473.0
21 TraesCS2A01G288400 chr6D 93.125 320 22 0 385 704 99798670 99798989 1.090000e-128 470.0
22 TraesCS2A01G288400 chr6D 90.476 42 4 0 77 118 245269515 245269474 3.620000e-04 56.5
23 TraesCS2A01G288400 chr3A 78.269 520 111 2 2015 2533 683251724 683252242 1.490000e-87 333.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G288400 chr2A 495958273 495960876 2603 True 1733.000000 4809 100.000000 1 2604 3 chr2A.!!$R1 2603
1 TraesCS2A01G288400 chr2B 435156688 435158694 2006 True 1153.666667 3138 96.759667 175 2604 3 chr2B.!!$R1 2429
2 TraesCS2A01G288400 chr2D 366498534 366500620 2086 True 880.500000 1744 95.896000 175 2604 4 chr2D.!!$R1 2429
3 TraesCS2A01G288400 chr5B 481142749 481143271 522 True 529.000000 529 84.895000 2016 2538 1 chr5B.!!$R1 522
4 TraesCS2A01G288400 chr5D 402203398 402203920 522 True 523.000000 523 84.704000 2016 2538 1 chr5D.!!$R1 522
5 TraesCS2A01G288400 chr5A 507967438 507967960 522 True 501.000000 501 83.939000 2016 2538 1 chr5A.!!$R1 522
6 TraesCS2A01G288400 chr3A 683251724 683252242 518 False 333.000000 333 78.269000 2015 2533 1 chr3A.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 637 0.107654 CCGGTGACATCCCTTCTTCC 60.108 60.0 0.0 0.0 0.0 3.46 F
935 936 0.252881 TCCTCTCTGCATTCACCCCT 60.253 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1528 0.251653 TGTCCTTGAGGTAGCCGAGT 60.252 55.000 0.0 0.0 36.34 4.18 R
1980 2077 1.687368 GCTTCCCATCCTCTTTGCCAT 60.687 52.381 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.645814 TTTAGTCTCATGTAACTTCTACTCCA 57.354 34.615 7.81 0.00 0.00 3.86
31 32 8.824756 TTAGTCTCATGTAACTTCTACTCCAT 57.175 34.615 7.81 0.00 0.00 3.41
32 33 7.341445 AGTCTCATGTAACTTCTACTCCATC 57.659 40.000 0.00 0.00 0.00 3.51
33 34 6.322712 AGTCTCATGTAACTTCTACTCCATCC 59.677 42.308 0.00 0.00 0.00 3.51
34 35 5.299531 TCTCATGTAACTTCTACTCCATCCG 59.700 44.000 0.00 0.00 0.00 4.18
35 36 4.954202 TCATGTAACTTCTACTCCATCCGT 59.046 41.667 0.00 0.00 0.00 4.69
36 37 4.713824 TGTAACTTCTACTCCATCCGTG 57.286 45.455 0.00 0.00 0.00 4.94
37 38 4.338012 TGTAACTTCTACTCCATCCGTGA 58.662 43.478 0.00 0.00 0.00 4.35
38 39 3.870633 AACTTCTACTCCATCCGTGAC 57.129 47.619 0.00 0.00 0.00 3.67
39 40 1.743958 ACTTCTACTCCATCCGTGACG 59.256 52.381 0.00 0.00 0.00 4.35
40 41 1.743958 CTTCTACTCCATCCGTGACGT 59.256 52.381 3.64 0.00 0.00 4.34
41 42 1.830279 TCTACTCCATCCGTGACGTT 58.170 50.000 3.64 0.00 0.00 3.99
42 43 2.165167 TCTACTCCATCCGTGACGTTT 58.835 47.619 3.64 0.00 0.00 3.60
43 44 2.559668 TCTACTCCATCCGTGACGTTTT 59.440 45.455 3.64 0.00 0.00 2.43
44 45 2.249844 ACTCCATCCGTGACGTTTTT 57.750 45.000 3.64 0.00 0.00 1.94
45 46 1.871039 ACTCCATCCGTGACGTTTTTG 59.129 47.619 3.64 0.00 0.00 2.44
46 47 2.139917 CTCCATCCGTGACGTTTTTGA 58.860 47.619 3.64 0.00 0.00 2.69
47 48 2.546368 CTCCATCCGTGACGTTTTTGAA 59.454 45.455 3.64 0.00 0.00 2.69
48 49 2.943690 TCCATCCGTGACGTTTTTGAAA 59.056 40.909 3.64 0.00 0.00 2.69
49 50 3.002862 TCCATCCGTGACGTTTTTGAAAG 59.997 43.478 3.64 0.00 0.00 2.62
50 51 3.242936 CCATCCGTGACGTTTTTGAAAGT 60.243 43.478 3.64 0.00 0.00 2.66
51 52 4.347813 CATCCGTGACGTTTTTGAAAGTT 58.652 39.130 3.64 0.00 0.00 2.66
52 53 5.503498 CATCCGTGACGTTTTTGAAAGTTA 58.497 37.500 3.64 0.00 0.00 2.24
53 54 5.542616 TCCGTGACGTTTTTGAAAGTTAA 57.457 34.783 3.64 0.00 0.00 2.01
54 55 5.936054 TCCGTGACGTTTTTGAAAGTTAAA 58.064 33.333 3.64 0.00 0.00 1.52
55 56 6.376978 TCCGTGACGTTTTTGAAAGTTAAAA 58.623 32.000 3.64 0.00 0.00 1.52
56 57 6.305160 TCCGTGACGTTTTTGAAAGTTAAAAC 59.695 34.615 3.64 0.00 39.61 2.43
57 58 6.087820 CCGTGACGTTTTTGAAAGTTAAAACA 59.912 34.615 3.64 0.00 41.84 2.83
58 59 7.155114 CGTGACGTTTTTGAAAGTTAAAACAG 58.845 34.615 11.23 7.51 41.84 3.16
59 60 6.946037 GTGACGTTTTTGAAAGTTAAAACAGC 59.054 34.615 11.23 4.85 41.84 4.40
60 61 6.864165 TGACGTTTTTGAAAGTTAAAACAGCT 59.136 30.769 11.23 0.00 41.84 4.24
61 62 7.382759 TGACGTTTTTGAAAGTTAAAACAGCTT 59.617 29.630 11.23 0.00 41.84 3.74
62 63 7.506474 ACGTTTTTGAAAGTTAAAACAGCTTG 58.494 30.769 11.23 0.67 41.84 4.01
63 64 6.461386 CGTTTTTGAAAGTTAAAACAGCTTGC 59.539 34.615 11.23 0.00 41.84 4.01
64 65 7.294473 GTTTTTGAAAGTTAAAACAGCTTGCA 58.706 30.769 7.35 0.00 41.54 4.08
65 66 7.426929 TTTTGAAAGTTAAAACAGCTTGCAA 57.573 28.000 0.00 0.00 40.26 4.08
66 67 7.426929 TTTGAAAGTTAAAACAGCTTGCAAA 57.573 28.000 0.00 5.78 45.62 3.68
67 68 7.426929 TTGAAAGTTAAAACAGCTTGCAAAA 57.573 28.000 0.00 0.00 39.37 2.44
68 69 7.426929 TGAAAGTTAAAACAGCTTGCAAAAA 57.573 28.000 0.00 0.00 30.49 1.94
69 70 7.294473 TGAAAGTTAAAACAGCTTGCAAAAAC 58.706 30.769 0.00 0.00 30.49 2.43
70 71 6.793492 AAGTTAAAACAGCTTGCAAAAACA 57.207 29.167 0.00 0.00 0.00 2.83
71 72 6.983474 AGTTAAAACAGCTTGCAAAAACAT 57.017 29.167 0.00 0.00 0.00 2.71
72 73 7.003939 AGTTAAAACAGCTTGCAAAAACATC 57.996 32.000 0.00 0.00 0.00 3.06
73 74 6.818142 AGTTAAAACAGCTTGCAAAAACATCT 59.182 30.769 0.00 0.00 0.00 2.90
74 75 5.473796 AAAACAGCTTGCAAAAACATCTG 57.526 34.783 0.00 4.09 0.00 2.90
75 76 4.389890 AACAGCTTGCAAAAACATCTGA 57.610 36.364 0.00 0.00 0.00 3.27
76 77 4.595762 ACAGCTTGCAAAAACATCTGAT 57.404 36.364 0.00 0.00 0.00 2.90
77 78 5.710513 ACAGCTTGCAAAAACATCTGATA 57.289 34.783 0.00 0.00 0.00 2.15
78 79 6.276832 ACAGCTTGCAAAAACATCTGATAT 57.723 33.333 0.00 0.00 0.00 1.63
79 80 6.694447 ACAGCTTGCAAAAACATCTGATATT 58.306 32.000 0.00 0.00 0.00 1.28
80 81 7.829725 ACAGCTTGCAAAAACATCTGATATTA 58.170 30.769 0.00 0.00 0.00 0.98
81 82 8.472413 ACAGCTTGCAAAAACATCTGATATTAT 58.528 29.630 0.00 0.00 0.00 1.28
82 83 9.955208 CAGCTTGCAAAAACATCTGATATTATA 57.045 29.630 0.00 0.00 0.00 0.98
84 85 9.403110 GCTTGCAAAAACATCTGATATTATAGG 57.597 33.333 0.00 0.00 0.00 2.57
87 88 8.773645 TGCAAAAACATCTGATATTATAGGACG 58.226 33.333 0.00 0.00 0.00 4.79
88 89 8.230486 GCAAAAACATCTGATATTATAGGACGG 58.770 37.037 0.00 0.00 0.00 4.79
89 90 9.489084 CAAAAACATCTGATATTATAGGACGGA 57.511 33.333 0.00 0.00 0.00 4.69
90 91 9.712305 AAAAACATCTGATATTATAGGACGGAG 57.288 33.333 0.00 0.00 0.00 4.63
91 92 7.411486 AACATCTGATATTATAGGACGGAGG 57.589 40.000 0.00 0.00 0.00 4.30
92 93 5.894393 ACATCTGATATTATAGGACGGAGGG 59.106 44.000 0.00 0.00 0.00 4.30
93 94 5.791303 TCTGATATTATAGGACGGAGGGA 57.209 43.478 0.00 0.00 0.00 4.20
94 95 5.756918 TCTGATATTATAGGACGGAGGGAG 58.243 45.833 0.00 0.00 0.00 4.30
95 96 5.253330 TCTGATATTATAGGACGGAGGGAGT 59.747 44.000 0.00 0.00 0.00 3.85
96 97 6.446110 TCTGATATTATAGGACGGAGGGAGTA 59.554 42.308 0.00 0.00 0.00 2.59
97 98 7.129038 TCTGATATTATAGGACGGAGGGAGTAT 59.871 40.741 0.00 0.00 0.00 2.12
98 99 7.061054 TGATATTATAGGACGGAGGGAGTATG 58.939 42.308 0.00 0.00 0.00 2.39
99 100 4.736611 TTATAGGACGGAGGGAGTATGT 57.263 45.455 0.00 0.00 0.00 2.29
100 101 2.653234 TAGGACGGAGGGAGTATGTC 57.347 55.000 0.00 0.00 0.00 3.06
101 102 0.629596 AGGACGGAGGGAGTATGTCA 59.370 55.000 0.00 0.00 0.00 3.58
102 103 1.218196 AGGACGGAGGGAGTATGTCAT 59.782 52.381 0.00 0.00 0.00 3.06
103 104 2.040178 GGACGGAGGGAGTATGTCATT 58.960 52.381 0.00 0.00 0.00 2.57
104 105 3.117246 AGGACGGAGGGAGTATGTCATTA 60.117 47.826 0.00 0.00 0.00 1.90
105 106 3.256136 GGACGGAGGGAGTATGTCATTAG 59.744 52.174 0.00 0.00 0.00 1.73
106 107 4.142790 GACGGAGGGAGTATGTCATTAGA 58.857 47.826 0.00 0.00 0.00 2.10
107 108 4.742012 ACGGAGGGAGTATGTCATTAGAT 58.258 43.478 0.00 0.00 0.00 1.98
108 109 5.148502 ACGGAGGGAGTATGTCATTAGATT 58.851 41.667 0.00 0.00 0.00 2.40
109 110 5.602978 ACGGAGGGAGTATGTCATTAGATTT 59.397 40.000 0.00 0.00 0.00 2.17
110 111 6.099845 ACGGAGGGAGTATGTCATTAGATTTT 59.900 38.462 0.00 0.00 0.00 1.82
111 112 6.992715 CGGAGGGAGTATGTCATTAGATTTTT 59.007 38.462 0.00 0.00 0.00 1.94
112 113 8.148351 CGGAGGGAGTATGTCATTAGATTTTTA 58.852 37.037 0.00 0.00 0.00 1.52
115 116 9.289782 AGGGAGTATGTCATTAGATTTTTATGC 57.710 33.333 0.00 0.00 0.00 3.14
116 117 8.515414 GGGAGTATGTCATTAGATTTTTATGCC 58.485 37.037 0.00 0.00 0.00 4.40
117 118 9.066892 GGAGTATGTCATTAGATTTTTATGCCA 57.933 33.333 0.00 0.00 0.00 4.92
119 120 9.632638 AGTATGTCATTAGATTTTTATGCCAGT 57.367 29.630 0.00 0.00 0.00 4.00
151 152 8.969260 ATTTCATGCTAATGTCACTTAGATGA 57.031 30.769 0.00 0.00 35.15 2.92
152 153 8.791327 TTTCATGCTAATGTCACTTAGATGAA 57.209 30.769 0.00 0.00 35.84 2.57
153 154 8.791327 TTCATGCTAATGTCACTTAGATGAAA 57.209 30.769 15.59 0.00 35.39 2.69
154 155 8.969260 TCATGCTAATGTCACTTAGATGAAAT 57.031 30.769 0.00 0.00 35.15 2.17
155 156 9.399797 TCATGCTAATGTCACTTAGATGAAATT 57.600 29.630 0.00 5.85 39.42 1.82
211 212 3.783082 ACCCTAGAAGCCTTTTCTAGCAT 59.217 43.478 15.24 5.74 44.01 3.79
252 253 5.288232 TGCATGTCTTTGTTCGAAAAACAAG 59.712 36.000 0.00 0.00 40.70 3.16
253 254 5.276348 GCATGTCTTTGTTCGAAAAACAAGG 60.276 40.000 0.00 2.26 40.70 3.61
254 255 4.739195 TGTCTTTGTTCGAAAAACAAGGG 58.261 39.130 0.00 0.00 40.70 3.95
255 256 4.218852 TGTCTTTGTTCGAAAAACAAGGGT 59.781 37.500 0.00 0.00 40.70 4.34
256 257 5.415077 TGTCTTTGTTCGAAAAACAAGGGTA 59.585 36.000 0.00 0.00 40.70 3.69
257 258 6.072064 TGTCTTTGTTCGAAAAACAAGGGTAA 60.072 34.615 0.00 0.00 40.70 2.85
258 259 6.252015 GTCTTTGTTCGAAAAACAAGGGTAAC 59.748 38.462 0.00 0.00 40.70 2.50
279 280 9.705290 GGTAACCATGAAACAAATTTAGTTCAT 57.295 29.630 16.98 16.98 0.00 2.57
291 292 9.515226 ACAAATTTAGTTCATTCTAGCTAACCA 57.485 29.630 0.00 0.00 0.00 3.67
292 293 9.774742 CAAATTTAGTTCATTCTAGCTAACCAC 57.225 33.333 0.00 0.00 0.00 4.16
293 294 8.507524 AATTTAGTTCATTCTAGCTAACCACC 57.492 34.615 0.00 0.00 0.00 4.61
294 295 6.614694 TTAGTTCATTCTAGCTAACCACCA 57.385 37.500 0.00 0.00 0.00 4.17
295 296 4.833390 AGTTCATTCTAGCTAACCACCAC 58.167 43.478 0.00 0.00 0.00 4.16
296 297 3.906720 TCATTCTAGCTAACCACCACC 57.093 47.619 0.00 0.00 0.00 4.61
297 298 2.504175 TCATTCTAGCTAACCACCACCC 59.496 50.000 0.00 0.00 0.00 4.61
298 299 2.337359 TTCTAGCTAACCACCACCCT 57.663 50.000 0.00 0.00 0.00 4.34
299 300 3.478175 TTCTAGCTAACCACCACCCTA 57.522 47.619 0.00 0.00 0.00 3.53
300 301 3.028094 TCTAGCTAACCACCACCCTAG 57.972 52.381 0.00 0.00 0.00 3.02
301 302 2.584031 TCTAGCTAACCACCACCCTAGA 59.416 50.000 0.00 0.00 31.55 2.43
302 303 2.337359 AGCTAACCACCACCCTAGAA 57.663 50.000 0.00 0.00 0.00 2.10
303 304 2.188817 AGCTAACCACCACCCTAGAAG 58.811 52.381 0.00 0.00 0.00 2.85
304 305 1.407025 GCTAACCACCACCCTAGAAGC 60.407 57.143 0.00 0.00 0.00 3.86
305 306 1.209747 CTAACCACCACCCTAGAAGCC 59.790 57.143 0.00 0.00 0.00 4.35
306 307 0.475828 AACCACCACCCTAGAAGCCT 60.476 55.000 0.00 0.00 0.00 4.58
307 308 0.475828 ACCACCACCCTAGAAGCCTT 60.476 55.000 0.00 0.00 0.00 4.35
308 309 0.698818 CCACCACCCTAGAAGCCTTT 59.301 55.000 0.00 0.00 0.00 3.11
309 310 1.075536 CCACCACCCTAGAAGCCTTTT 59.924 52.381 0.00 0.00 0.00 2.27
310 311 2.437413 CACCACCCTAGAAGCCTTTTC 58.563 52.381 0.00 0.00 0.00 2.29
311 312 2.040412 CACCACCCTAGAAGCCTTTTCT 59.960 50.000 0.00 0.00 0.00 2.52
312 313 3.263425 CACCACCCTAGAAGCCTTTTCTA 59.737 47.826 0.00 0.00 0.00 2.10
313 314 3.519913 ACCACCCTAGAAGCCTTTTCTAG 59.480 47.826 14.18 14.18 44.62 2.43
314 315 3.536570 CACCCTAGAAGCCTTTTCTAGC 58.463 50.000 15.24 0.00 44.01 3.42
315 316 3.055094 CACCCTAGAAGCCTTTTCTAGCA 60.055 47.826 15.24 0.00 44.01 3.49
316 317 3.783082 ACCCTAGAAGCCTTTTCTAGCAT 59.217 43.478 15.24 5.74 44.01 3.79
317 318 4.969359 ACCCTAGAAGCCTTTTCTAGCATA 59.031 41.667 15.24 0.00 44.01 3.14
318 319 5.071115 ACCCTAGAAGCCTTTTCTAGCATAG 59.929 44.000 15.24 8.30 44.01 2.23
319 320 4.994217 CCTAGAAGCCTTTTCTAGCATAGC 59.006 45.833 15.24 0.00 44.01 2.97
320 321 4.769345 AGAAGCCTTTTCTAGCATAGCT 57.231 40.909 0.00 0.00 43.41 3.32
321 322 4.702831 AGAAGCCTTTTCTAGCATAGCTC 58.297 43.478 0.00 0.00 40.44 4.09
322 323 4.408596 AGAAGCCTTTTCTAGCATAGCTCT 59.591 41.667 0.00 0.00 40.44 4.09
323 324 4.070630 AGCCTTTTCTAGCATAGCTCTG 57.929 45.455 0.00 0.00 40.44 3.35
324 325 2.547634 GCCTTTTCTAGCATAGCTCTGC 59.452 50.000 15.84 15.84 40.44 4.26
325 326 3.801698 CCTTTTCTAGCATAGCTCTGCA 58.198 45.455 24.15 10.57 44.77 4.41
326 327 3.559242 CCTTTTCTAGCATAGCTCTGCAC 59.441 47.826 24.15 0.00 44.77 4.57
327 328 4.440880 CTTTTCTAGCATAGCTCTGCACT 58.559 43.478 24.15 8.73 44.77 4.40
328 329 3.724508 TTCTAGCATAGCTCTGCACTC 57.275 47.619 24.15 0.00 44.77 3.51
329 330 1.959985 TCTAGCATAGCTCTGCACTCC 59.040 52.381 24.15 0.00 44.77 3.85
330 331 1.685517 CTAGCATAGCTCTGCACTCCA 59.314 52.381 24.15 4.89 44.77 3.86
331 332 0.907486 AGCATAGCTCTGCACTCCAA 59.093 50.000 24.15 0.00 44.77 3.53
332 333 1.280133 AGCATAGCTCTGCACTCCAAA 59.720 47.619 24.15 0.00 44.77 3.28
333 334 2.092538 AGCATAGCTCTGCACTCCAAAT 60.093 45.455 24.15 0.00 44.77 2.32
334 335 2.033049 GCATAGCTCTGCACTCCAAATG 59.967 50.000 18.39 0.00 41.87 2.32
335 336 1.742761 TAGCTCTGCACTCCAAATGC 58.257 50.000 0.00 0.00 43.68 3.56
343 344 3.308438 GCACTCCAAATGCATGTCTTT 57.692 42.857 0.00 0.00 42.88 2.52
344 345 2.991190 GCACTCCAAATGCATGTCTTTG 59.009 45.455 0.00 1.21 42.88 2.77
345 346 3.553508 GCACTCCAAATGCATGTCTTTGT 60.554 43.478 0.00 0.00 42.88 2.83
346 347 4.624015 CACTCCAAATGCATGTCTTTGTT 58.376 39.130 0.00 0.00 31.83 2.83
347 348 4.682860 CACTCCAAATGCATGTCTTTGTTC 59.317 41.667 0.00 0.00 31.83 3.18
348 349 3.899734 TCCAAATGCATGTCTTTGTTCG 58.100 40.909 0.00 6.18 31.83 3.95
349 350 3.567585 TCCAAATGCATGTCTTTGTTCGA 59.432 39.130 0.00 7.77 31.83 3.71
350 351 4.037327 TCCAAATGCATGTCTTTGTTCGAA 59.963 37.500 0.00 0.00 31.83 3.71
351 352 4.744137 CCAAATGCATGTCTTTGTTCGAAA 59.256 37.500 0.00 0.00 31.83 3.46
352 353 5.233902 CCAAATGCATGTCTTTGTTCGAAAA 59.766 36.000 0.00 0.00 31.83 2.29
353 354 6.238049 CCAAATGCATGTCTTTGTTCGAAAAA 60.238 34.615 0.00 0.00 31.83 1.94
354 355 5.888412 ATGCATGTCTTTGTTCGAAAAAC 57.112 34.783 0.00 0.00 0.00 2.43
355 356 4.738124 TGCATGTCTTTGTTCGAAAAACA 58.262 34.783 0.00 0.00 0.00 2.83
356 357 5.164233 TGCATGTCTTTGTTCGAAAAACAA 58.836 33.333 0.00 0.00 38.26 2.83
378 379 3.471495 GGTAACCATGAAACGCTTCAG 57.529 47.619 7.40 0.00 44.68 3.02
379 380 2.161609 GGTAACCATGAAACGCTTCAGG 59.838 50.000 7.40 6.81 44.68 3.86
383 384 2.907910 CATGAAACGCTTCAGGGAAG 57.092 50.000 7.40 1.67 44.68 3.46
384 385 1.470098 CATGAAACGCTTCAGGGAAGG 59.530 52.381 7.40 1.59 44.68 3.46
389 390 4.303257 GCTTCAGGGAAGGGAACG 57.697 61.111 7.97 0.00 39.76 3.95
390 391 1.677552 GCTTCAGGGAAGGGAACGA 59.322 57.895 7.97 0.00 39.76 3.85
391 392 0.391793 GCTTCAGGGAAGGGAACGAG 60.392 60.000 7.97 0.00 39.76 4.18
392 393 1.267121 CTTCAGGGAAGGGAACGAGA 58.733 55.000 0.00 0.00 36.16 4.04
393 394 1.834263 CTTCAGGGAAGGGAACGAGAT 59.166 52.381 0.00 0.00 36.16 2.75
394 395 1.486211 TCAGGGAAGGGAACGAGATC 58.514 55.000 0.00 0.00 0.00 2.75
395 396 0.466124 CAGGGAAGGGAACGAGATCC 59.534 60.000 0.00 0.00 38.86 3.36
396 397 0.340208 AGGGAAGGGAACGAGATCCT 59.660 55.000 0.00 0.00 39.57 3.24
397 398 0.753867 GGGAAGGGAACGAGATCCTC 59.246 60.000 0.00 0.00 39.57 3.71
398 399 1.689892 GGGAAGGGAACGAGATCCTCT 60.690 57.143 0.00 0.00 39.57 3.69
399 400 2.424523 GGGAAGGGAACGAGATCCTCTA 60.425 54.545 0.00 0.00 39.57 2.43
400 401 3.297736 GGAAGGGAACGAGATCCTCTAA 58.702 50.000 0.00 0.00 39.57 2.10
401 402 3.068448 GGAAGGGAACGAGATCCTCTAAC 59.932 52.174 0.00 0.00 39.57 2.34
402 403 3.383698 AGGGAACGAGATCCTCTAACA 57.616 47.619 0.00 0.00 39.57 2.41
403 404 3.917300 AGGGAACGAGATCCTCTAACAT 58.083 45.455 0.00 0.00 39.57 2.71
404 405 4.290942 AGGGAACGAGATCCTCTAACATT 58.709 43.478 0.00 0.00 39.57 2.71
405 406 5.455872 AGGGAACGAGATCCTCTAACATTA 58.544 41.667 0.00 0.00 39.57 1.90
406 407 6.078664 AGGGAACGAGATCCTCTAACATTAT 58.921 40.000 0.00 0.00 39.57 1.28
407 408 6.015010 AGGGAACGAGATCCTCTAACATTATG 60.015 42.308 0.00 0.00 39.57 1.90
408 409 6.015350 GGGAACGAGATCCTCTAACATTATGA 60.015 42.308 0.00 0.00 39.57 2.15
409 410 7.434492 GGAACGAGATCCTCTAACATTATGAA 58.566 38.462 0.00 0.00 36.50 2.57
410 411 7.596995 GGAACGAGATCCTCTAACATTATGAAG 59.403 40.741 0.00 0.00 36.50 3.02
411 412 6.987386 ACGAGATCCTCTAACATTATGAAGG 58.013 40.000 0.00 0.74 0.00 3.46
412 413 6.015010 ACGAGATCCTCTAACATTATGAAGGG 60.015 42.308 0.00 0.00 0.00 3.95
413 414 6.209589 CGAGATCCTCTAACATTATGAAGGGA 59.790 42.308 0.00 5.81 0.00 4.20
414 415 7.093552 CGAGATCCTCTAACATTATGAAGGGAT 60.094 40.741 0.00 9.66 34.29 3.85
415 416 7.915930 AGATCCTCTAACATTATGAAGGGATG 58.084 38.462 17.30 0.00 32.13 3.51
416 417 6.439636 TCCTCTAACATTATGAAGGGATGG 57.560 41.667 0.00 0.00 0.00 3.51
417 418 5.911178 TCCTCTAACATTATGAAGGGATGGT 59.089 40.000 0.00 0.00 0.00 3.55
418 419 7.079700 TCCTCTAACATTATGAAGGGATGGTA 58.920 38.462 0.00 0.00 0.00 3.25
419 420 7.235606 TCCTCTAACATTATGAAGGGATGGTAG 59.764 40.741 0.00 2.11 40.67 3.18
420 421 7.316393 TCTAACATTATGAAGGGATGGTAGG 57.684 40.000 0.00 0.00 40.06 3.18
421 422 5.324832 AACATTATGAAGGGATGGTAGGG 57.675 43.478 0.00 0.00 0.00 3.53
422 423 4.577096 ACATTATGAAGGGATGGTAGGGA 58.423 43.478 0.00 0.00 0.00 4.20
423 424 4.981647 ACATTATGAAGGGATGGTAGGGAA 59.018 41.667 0.00 0.00 0.00 3.97
424 425 5.073691 ACATTATGAAGGGATGGTAGGGAAG 59.926 44.000 0.00 0.00 0.00 3.46
425 426 1.213296 TGAAGGGATGGTAGGGAAGC 58.787 55.000 0.00 0.00 0.00 3.86
426 427 1.274416 TGAAGGGATGGTAGGGAAGCT 60.274 52.381 0.00 0.00 0.00 3.74
427 428 2.022428 TGAAGGGATGGTAGGGAAGCTA 60.022 50.000 0.00 0.00 0.00 3.32
428 429 2.104669 AGGGATGGTAGGGAAGCTAC 57.895 55.000 0.00 0.00 0.00 3.58
429 430 1.294068 AGGGATGGTAGGGAAGCTACA 59.706 52.381 0.00 0.00 0.00 2.74
430 431 1.694696 GGGATGGTAGGGAAGCTACAG 59.305 57.143 0.00 0.00 0.00 2.74
431 432 2.399580 GGATGGTAGGGAAGCTACAGT 58.600 52.381 0.00 0.00 0.00 3.55
432 433 3.573695 GGATGGTAGGGAAGCTACAGTA 58.426 50.000 0.00 0.00 0.00 2.74
433 434 3.321396 GGATGGTAGGGAAGCTACAGTAC 59.679 52.174 0.00 0.00 0.00 2.73
434 435 2.743553 TGGTAGGGAAGCTACAGTACC 58.256 52.381 7.87 7.87 0.00 3.34
435 436 2.037901 GGTAGGGAAGCTACAGTACCC 58.962 57.143 0.00 0.00 40.71 3.69
438 439 1.861982 GGGAAGCTACAGTACCCTGA 58.138 55.000 0.00 0.00 41.50 3.86
439 440 1.481363 GGGAAGCTACAGTACCCTGAC 59.519 57.143 0.00 0.00 41.50 3.51
440 441 2.176889 GGAAGCTACAGTACCCTGACA 58.823 52.381 0.00 0.00 41.50 3.58
441 442 2.766828 GGAAGCTACAGTACCCTGACAT 59.233 50.000 0.00 0.00 41.50 3.06
442 443 3.181474 GGAAGCTACAGTACCCTGACATC 60.181 52.174 0.00 0.00 41.50 3.06
443 444 2.389715 AGCTACAGTACCCTGACATCC 58.610 52.381 0.00 0.00 41.50 3.51
444 445 1.413077 GCTACAGTACCCTGACATCCC 59.587 57.143 0.00 0.00 41.50 3.85
445 446 2.955461 GCTACAGTACCCTGACATCCCT 60.955 54.545 0.00 0.00 41.50 4.20
446 447 2.344093 ACAGTACCCTGACATCCCTT 57.656 50.000 0.00 0.00 41.50 3.95
447 448 2.188817 ACAGTACCCTGACATCCCTTC 58.811 52.381 0.00 0.00 41.50 3.46
448 449 2.225650 ACAGTACCCTGACATCCCTTCT 60.226 50.000 0.00 0.00 41.50 2.85
449 450 2.840651 CAGTACCCTGACATCCCTTCTT 59.159 50.000 0.00 0.00 41.50 2.52
450 451 3.108376 AGTACCCTGACATCCCTTCTTC 58.892 50.000 0.00 0.00 0.00 2.87
451 452 2.044793 ACCCTGACATCCCTTCTTCA 57.955 50.000 0.00 0.00 0.00 3.02
452 453 1.630878 ACCCTGACATCCCTTCTTCAC 59.369 52.381 0.00 0.00 0.00 3.18
453 454 1.630369 CCCTGACATCCCTTCTTCACA 59.370 52.381 0.00 0.00 0.00 3.58
454 455 2.240667 CCCTGACATCCCTTCTTCACAT 59.759 50.000 0.00 0.00 0.00 3.21
455 456 3.539604 CCTGACATCCCTTCTTCACATC 58.460 50.000 0.00 0.00 0.00 3.06
456 457 3.539604 CTGACATCCCTTCTTCACATCC 58.460 50.000 0.00 0.00 0.00 3.51
457 458 2.912295 TGACATCCCTTCTTCACATCCA 59.088 45.455 0.00 0.00 0.00 3.41
458 459 3.524789 TGACATCCCTTCTTCACATCCAT 59.475 43.478 0.00 0.00 0.00 3.41
459 460 4.721274 TGACATCCCTTCTTCACATCCATA 59.279 41.667 0.00 0.00 0.00 2.74
460 461 5.370584 TGACATCCCTTCTTCACATCCATAT 59.629 40.000 0.00 0.00 0.00 1.78
461 462 5.628130 ACATCCCTTCTTCACATCCATATG 58.372 41.667 0.00 0.00 39.17 1.78
462 463 5.370584 ACATCCCTTCTTCACATCCATATGA 59.629 40.000 3.65 0.00 36.54 2.15
463 464 6.045224 ACATCCCTTCTTCACATCCATATGAT 59.955 38.462 3.65 0.00 36.54 2.45
464 465 6.520021 TCCCTTCTTCACATCCATATGATT 57.480 37.500 3.65 0.00 36.54 2.57
465 466 7.631510 TCCCTTCTTCACATCCATATGATTA 57.368 36.000 3.65 0.00 36.54 1.75
466 467 8.044574 TCCCTTCTTCACATCCATATGATTAA 57.955 34.615 3.65 0.00 36.54 1.40
467 468 8.159447 TCCCTTCTTCACATCCATATGATTAAG 58.841 37.037 3.65 0.00 36.54 1.85
468 469 7.094463 CCCTTCTTCACATCCATATGATTAAGC 60.094 40.741 3.65 0.00 36.54 3.09
469 470 7.094463 CCTTCTTCACATCCATATGATTAAGCC 60.094 40.741 3.65 0.00 36.54 4.35
470 471 7.083062 TCTTCACATCCATATGATTAAGCCT 57.917 36.000 3.65 0.00 36.54 4.58
471 472 8.206126 TCTTCACATCCATATGATTAAGCCTA 57.794 34.615 3.65 0.00 36.54 3.93
472 473 8.659527 TCTTCACATCCATATGATTAAGCCTAA 58.340 33.333 3.65 0.00 36.54 2.69
473 474 9.288576 CTTCACATCCATATGATTAAGCCTAAA 57.711 33.333 3.65 0.00 36.54 1.85
474 475 9.639563 TTCACATCCATATGATTAAGCCTAAAA 57.360 29.630 3.65 0.00 36.54 1.52
475 476 9.812347 TCACATCCATATGATTAAGCCTAAAAT 57.188 29.630 3.65 0.00 36.54 1.82
476 477 9.850628 CACATCCATATGATTAAGCCTAAAATG 57.149 33.333 3.65 0.00 36.54 2.32
477 478 9.812347 ACATCCATATGATTAAGCCTAAAATGA 57.188 29.630 3.65 0.00 36.54 2.57
480 481 9.866655 TCCATATGATTAAGCCTAAAATGACTT 57.133 29.630 3.65 0.00 0.00 3.01
492 493 9.639601 AGCCTAAAATGACTTAAACTAATTTGC 57.360 29.630 0.00 0.00 0.00 3.68
493 494 9.418045 GCCTAAAATGACTTAAACTAATTTGCA 57.582 29.630 0.00 0.00 0.00 4.08
598 599 6.683090 TTTTTATGAACAGTAATTGCGCAC 57.317 33.333 11.12 0.00 0.00 5.34
599 600 5.363979 TTTATGAACAGTAATTGCGCACA 57.636 34.783 11.12 0.71 0.00 4.57
600 601 5.559427 TTATGAACAGTAATTGCGCACAT 57.441 34.783 11.12 9.72 0.00 3.21
601 602 3.913548 TGAACAGTAATTGCGCACATT 57.086 38.095 11.12 15.62 0.00 2.71
602 603 5.559427 ATGAACAGTAATTGCGCACATTA 57.441 34.783 11.12 14.58 0.00 1.90
603 604 5.559427 TGAACAGTAATTGCGCACATTAT 57.441 34.783 11.12 0.00 0.00 1.28
604 605 5.568482 TGAACAGTAATTGCGCACATTATC 58.432 37.500 11.12 11.81 0.00 1.75
605 606 5.353956 TGAACAGTAATTGCGCACATTATCT 59.646 36.000 11.12 13.37 0.00 1.98
606 607 5.818136 ACAGTAATTGCGCACATTATCTT 57.182 34.783 11.12 5.59 0.00 2.40
607 608 5.810525 ACAGTAATTGCGCACATTATCTTC 58.189 37.500 11.12 6.15 0.00 2.87
608 609 4.900182 CAGTAATTGCGCACATTATCTTCG 59.100 41.667 11.12 3.19 0.00 3.79
609 610 2.389713 ATTGCGCACATTATCTTCGC 57.610 45.000 11.12 0.00 45.23 4.70
610 611 1.368641 TTGCGCACATTATCTTCGCT 58.631 45.000 11.12 0.00 45.24 4.93
611 612 2.217429 TGCGCACATTATCTTCGCTA 57.783 45.000 5.66 0.00 45.24 4.26
612 613 1.858458 TGCGCACATTATCTTCGCTAC 59.142 47.619 5.66 0.00 45.24 3.58
613 614 1.858458 GCGCACATTATCTTCGCTACA 59.142 47.619 0.30 0.00 42.19 2.74
614 615 2.097202 GCGCACATTATCTTCGCTACAG 60.097 50.000 0.30 0.00 42.19 2.74
615 616 3.116300 CGCACATTATCTTCGCTACAGT 58.884 45.455 0.00 0.00 0.00 3.55
616 617 3.060940 CGCACATTATCTTCGCTACAGTG 60.061 47.826 0.00 0.00 0.00 3.66
617 618 3.302740 GCACATTATCTTCGCTACAGTGC 60.303 47.826 0.00 0.00 42.21 4.40
618 619 3.246226 CACATTATCTTCGCTACAGTGCC 59.754 47.826 0.00 0.00 0.00 5.01
619 620 2.203800 TTATCTTCGCTACAGTGCCG 57.796 50.000 0.00 0.00 0.00 5.69
620 621 0.384309 TATCTTCGCTACAGTGCCGG 59.616 55.000 0.00 0.00 0.00 6.13
621 622 1.605058 ATCTTCGCTACAGTGCCGGT 61.605 55.000 1.90 0.00 0.00 5.28
622 623 2.048597 TTCGCTACAGTGCCGGTG 60.049 61.111 1.90 0.00 0.00 4.94
623 624 2.486636 CTTCGCTACAGTGCCGGTGA 62.487 60.000 1.90 0.00 0.00 4.02
624 625 2.758770 TTCGCTACAGTGCCGGTGAC 62.759 60.000 1.90 0.00 0.00 3.67
625 626 2.342279 GCTACAGTGCCGGTGACA 59.658 61.111 1.90 0.00 0.00 3.58
626 627 1.079127 GCTACAGTGCCGGTGACAT 60.079 57.895 1.90 0.00 0.00 3.06
627 628 1.084370 GCTACAGTGCCGGTGACATC 61.084 60.000 1.90 0.00 0.00 3.06
628 629 0.460284 CTACAGTGCCGGTGACATCC 60.460 60.000 1.90 0.00 0.00 3.51
629 630 1.895020 TACAGTGCCGGTGACATCCC 61.895 60.000 1.90 0.00 0.00 3.85
630 631 2.607750 AGTGCCGGTGACATCCCT 60.608 61.111 1.90 0.00 0.00 4.20
631 632 2.224159 AGTGCCGGTGACATCCCTT 61.224 57.895 1.90 0.00 0.00 3.95
632 633 1.745489 GTGCCGGTGACATCCCTTC 60.745 63.158 1.90 0.00 0.00 3.46
633 634 1.918293 TGCCGGTGACATCCCTTCT 60.918 57.895 1.90 0.00 0.00 2.85
634 635 1.299976 GCCGGTGACATCCCTTCTT 59.700 57.895 1.90 0.00 0.00 2.52
635 636 0.744771 GCCGGTGACATCCCTTCTTC 60.745 60.000 1.90 0.00 0.00 2.87
636 637 0.107654 CCGGTGACATCCCTTCTTCC 60.108 60.000 0.00 0.00 0.00 3.46
637 638 0.905357 CGGTGACATCCCTTCTTCCT 59.095 55.000 0.00 0.00 0.00 3.36
638 639 1.279271 CGGTGACATCCCTTCTTCCTT 59.721 52.381 0.00 0.00 0.00 3.36
639 640 2.290323 CGGTGACATCCCTTCTTCCTTT 60.290 50.000 0.00 0.00 0.00 3.11
640 641 3.767711 GGTGACATCCCTTCTTCCTTTT 58.232 45.455 0.00 0.00 0.00 2.27
641 642 3.507622 GGTGACATCCCTTCTTCCTTTTG 59.492 47.826 0.00 0.00 0.00 2.44
642 643 3.057245 GTGACATCCCTTCTTCCTTTTGC 60.057 47.826 0.00 0.00 0.00 3.68
643 644 3.157087 GACATCCCTTCTTCCTTTTGCA 58.843 45.455 0.00 0.00 0.00 4.08
644 645 2.893489 ACATCCCTTCTTCCTTTTGCAC 59.107 45.455 0.00 0.00 0.00 4.57
645 646 3.160269 CATCCCTTCTTCCTTTTGCACT 58.840 45.455 0.00 0.00 0.00 4.40
646 647 2.586425 TCCCTTCTTCCTTTTGCACTG 58.414 47.619 0.00 0.00 0.00 3.66
647 648 1.615392 CCCTTCTTCCTTTTGCACTGG 59.385 52.381 0.00 0.00 0.00 4.00
648 649 1.615392 CCTTCTTCCTTTTGCACTGGG 59.385 52.381 0.00 0.00 0.00 4.45
649 650 2.586425 CTTCTTCCTTTTGCACTGGGA 58.414 47.619 0.00 0.00 0.00 4.37
650 651 2.978156 TCTTCCTTTTGCACTGGGAT 57.022 45.000 0.00 0.00 0.00 3.85
651 652 3.243359 TCTTCCTTTTGCACTGGGATT 57.757 42.857 0.00 0.00 0.00 3.01
652 653 2.892852 TCTTCCTTTTGCACTGGGATTG 59.107 45.455 0.00 0.00 0.00 2.67
653 654 0.968405 TCCTTTTGCACTGGGATTGC 59.032 50.000 0.00 0.00 40.63 3.56
657 658 4.084265 TGCACTGGGATTGCACTG 57.916 55.556 0.00 0.00 45.06 3.66
658 659 1.151221 TGCACTGGGATTGCACTGT 59.849 52.632 0.00 0.00 45.06 3.55
659 660 0.399833 TGCACTGGGATTGCACTGTA 59.600 50.000 0.00 0.00 45.06 2.74
660 661 1.089920 GCACTGGGATTGCACTGTAG 58.910 55.000 0.00 0.00 39.93 2.74
661 662 1.089920 CACTGGGATTGCACTGTAGC 58.910 55.000 0.00 0.00 0.00 3.58
662 663 0.987294 ACTGGGATTGCACTGTAGCT 59.013 50.000 0.00 0.00 34.99 3.32
663 664 1.352352 ACTGGGATTGCACTGTAGCTT 59.648 47.619 0.00 0.00 34.99 3.74
664 665 2.012673 CTGGGATTGCACTGTAGCTTC 58.987 52.381 0.00 0.00 34.99 3.86
665 666 1.350684 TGGGATTGCACTGTAGCTTCA 59.649 47.619 0.00 0.00 34.99 3.02
666 667 2.025981 TGGGATTGCACTGTAGCTTCAT 60.026 45.455 0.00 0.00 34.99 2.57
667 668 2.357009 GGGATTGCACTGTAGCTTCATG 59.643 50.000 0.00 0.00 34.99 3.07
668 669 3.273434 GGATTGCACTGTAGCTTCATGA 58.727 45.455 0.00 0.00 34.99 3.07
669 670 3.064545 GGATTGCACTGTAGCTTCATGAC 59.935 47.826 0.00 0.00 34.99 3.06
670 671 2.837532 TGCACTGTAGCTTCATGACA 57.162 45.000 0.00 0.00 34.99 3.58
671 672 3.339253 TGCACTGTAGCTTCATGACAT 57.661 42.857 0.00 0.00 34.99 3.06
672 673 3.264947 TGCACTGTAGCTTCATGACATC 58.735 45.455 0.00 0.00 34.99 3.06
673 674 2.611292 GCACTGTAGCTTCATGACATCC 59.389 50.000 0.00 0.00 0.00 3.51
674 675 3.201290 CACTGTAGCTTCATGACATCCC 58.799 50.000 0.00 0.00 0.00 3.85
675 676 3.110705 ACTGTAGCTTCATGACATCCCT 58.889 45.455 0.00 0.00 0.00 4.20
676 677 3.521126 ACTGTAGCTTCATGACATCCCTT 59.479 43.478 0.00 0.00 0.00 3.95
677 678 4.125703 CTGTAGCTTCATGACATCCCTTC 58.874 47.826 0.00 0.00 0.00 3.46
678 679 3.519107 TGTAGCTTCATGACATCCCTTCA 59.481 43.478 0.00 0.00 0.00 3.02
679 680 3.947612 AGCTTCATGACATCCCTTCAT 57.052 42.857 0.00 0.00 33.81 2.57
680 681 5.366477 TGTAGCTTCATGACATCCCTTCATA 59.634 40.000 0.00 0.00 32.23 2.15
681 682 5.378230 AGCTTCATGACATCCCTTCATAA 57.622 39.130 0.00 0.00 32.23 1.90
682 683 5.950023 AGCTTCATGACATCCCTTCATAAT 58.050 37.500 0.00 0.00 32.23 1.28
683 684 5.768662 AGCTTCATGACATCCCTTCATAATG 59.231 40.000 0.00 0.00 32.23 1.90
684 685 5.533903 GCTTCATGACATCCCTTCATAATGT 59.466 40.000 0.00 0.00 36.37 2.71
685 686 6.040166 GCTTCATGACATCCCTTCATAATGTT 59.960 38.462 0.00 0.00 33.91 2.71
686 687 7.229306 GCTTCATGACATCCCTTCATAATGTTA 59.771 37.037 0.00 0.00 33.91 2.41
687 688 8.681486 TTCATGACATCCCTTCATAATGTTAG 57.319 34.615 0.00 0.00 33.91 2.34
688 689 8.033178 TCATGACATCCCTTCATAATGTTAGA 57.967 34.615 0.00 0.00 33.91 2.10
689 690 8.152898 TCATGACATCCCTTCATAATGTTAGAG 58.847 37.037 0.00 0.00 33.91 2.43
690 691 7.675161 TGACATCCCTTCATAATGTTAGAGA 57.325 36.000 0.00 0.00 33.91 3.10
691 692 8.089625 TGACATCCCTTCATAATGTTAGAGAA 57.910 34.615 0.00 0.00 33.91 2.87
692 693 8.717717 TGACATCCCTTCATAATGTTAGAGAAT 58.282 33.333 0.00 0.00 33.91 2.40
693 694 9.213799 GACATCCCTTCATAATGTTAGAGAATC 57.786 37.037 0.00 0.00 33.91 2.52
694 695 8.160106 ACATCCCTTCATAATGTTAGAGAATCC 58.840 37.037 0.00 0.00 28.91 3.01
695 696 7.690454 TCCCTTCATAATGTTAGAGAATCCA 57.310 36.000 0.00 0.00 33.66 3.41
696 697 8.280258 TCCCTTCATAATGTTAGAGAATCCAT 57.720 34.615 0.00 0.00 33.66 3.41
697 698 8.727149 TCCCTTCATAATGTTAGAGAATCCATT 58.273 33.333 0.00 0.00 33.66 3.16
698 699 9.359653 CCCTTCATAATGTTAGAGAATCCATTT 57.640 33.333 0.00 0.00 33.66 2.32
701 702 8.607441 TCATAATGTTAGAGAATCCATTTCCG 57.393 34.615 0.00 0.00 34.67 4.30
702 703 7.661437 TCATAATGTTAGAGAATCCATTTCCGG 59.339 37.037 0.00 0.00 34.67 5.14
703 704 4.837093 TGTTAGAGAATCCATTTCCGGT 57.163 40.909 0.00 0.00 34.67 5.28
704 705 5.943349 TGTTAGAGAATCCATTTCCGGTA 57.057 39.130 0.00 0.00 34.67 4.02
705 706 5.667466 TGTTAGAGAATCCATTTCCGGTAC 58.333 41.667 0.00 0.00 34.67 3.34
706 707 3.454371 AGAGAATCCATTTCCGGTACG 57.546 47.619 0.00 0.00 46.88 3.67
743 744 5.067805 GGATATTGCCTAAGAGTTTTGTGGG 59.932 44.000 0.00 0.00 0.00 4.61
772 773 0.389948 CCTCAAGGAAACCCGAGTCG 60.390 60.000 5.29 5.29 37.39 4.18
867 868 1.153756 CCTCCTGCCACCTTGGTTT 59.846 57.895 0.00 0.00 40.46 3.27
893 894 2.677524 GCAGGAGGTGGCATGCAA 60.678 61.111 21.36 4.92 44.30 4.08
935 936 0.252881 TCCTCTCTGCATTCACCCCT 60.253 55.000 0.00 0.00 0.00 4.79
938 939 2.392662 CTCTCTGCATTCACCCCTAGA 58.607 52.381 0.00 0.00 0.00 2.43
958 959 4.537433 ATTCAGCCTCCGCCGAGC 62.537 66.667 0.00 0.00 34.49 5.03
966 967 4.373116 TCCGCCGAGCCAGAACAC 62.373 66.667 0.00 0.00 0.00 3.32
967 968 4.680237 CCGCCGAGCCAGAACACA 62.680 66.667 0.00 0.00 0.00 3.72
1188 1189 2.224719 GCAAGGCATCTCTGACCCATAT 60.225 50.000 0.00 0.00 0.00 1.78
1333 1342 4.239203 GAGCGCTCGATCGACGGT 62.239 66.667 30.20 30.20 42.82 4.83
1424 1433 3.003173 TTGTCCAGAGCCCCCTCG 61.003 66.667 0.00 0.00 43.05 4.63
1441 1450 0.790207 TCGCAAACTGCAACGAGATC 59.210 50.000 0.00 0.00 45.36 2.75
1581 1590 1.269051 CCTGCTCAAAACGTTCAACCC 60.269 52.381 0.00 0.00 0.00 4.11
1585 1594 2.031420 GCTCAAAACGTTCAACCCTACC 60.031 50.000 0.00 0.00 0.00 3.18
1652 1666 2.595463 GAGGCTGCTGCACCACAA 60.595 61.111 17.89 0.00 41.91 3.33
1800 1897 5.772825 TCTGCAAGCTGTAACAAATCTTT 57.227 34.783 0.00 0.00 0.00 2.52
1821 1918 5.867903 TTTCAACAAAAGTCACCATCCAT 57.132 34.783 0.00 0.00 0.00 3.41
1833 1930 5.541868 AGTCACCATCCATCTAACCTGATAG 59.458 44.000 0.00 0.00 0.00 2.08
2065 2162 2.157738 GCAGTCCAGTTGAGATGCTTT 58.842 47.619 0.00 0.00 35.15 3.51
2280 2377 1.203428 TGGGACATCCTTCTCCTCCAA 60.203 52.381 0.00 0.00 36.20 3.53
2538 2635 1.218875 CGCGCACCTCTGTACAACAA 61.219 55.000 8.75 0.00 0.00 2.83
2595 2692 3.340814 TGAGGAAGAGTTCAGATTGGC 57.659 47.619 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.256228 TGGAGTAGAAGTTACATGAGACTAAAT 57.744 33.333 0.00 0.00 0.00 1.40
5 6 8.645814 TGGAGTAGAAGTTACATGAGACTAAA 57.354 34.615 0.00 0.00 0.00 1.85
6 7 8.824756 ATGGAGTAGAAGTTACATGAGACTAA 57.175 34.615 0.00 0.00 0.00 2.24
7 8 7.502895 GGATGGAGTAGAAGTTACATGAGACTA 59.497 40.741 0.00 0.00 0.00 2.59
8 9 6.322712 GGATGGAGTAGAAGTTACATGAGACT 59.677 42.308 0.00 0.00 0.00 3.24
9 10 6.508777 GGATGGAGTAGAAGTTACATGAGAC 58.491 44.000 0.00 0.00 0.00 3.36
10 11 5.299531 CGGATGGAGTAGAAGTTACATGAGA 59.700 44.000 0.00 0.00 0.00 3.27
11 12 5.067936 ACGGATGGAGTAGAAGTTACATGAG 59.932 44.000 0.00 0.00 0.00 2.90
12 13 4.954202 ACGGATGGAGTAGAAGTTACATGA 59.046 41.667 0.00 0.00 0.00 3.07
13 14 5.043903 CACGGATGGAGTAGAAGTTACATG 58.956 45.833 0.00 0.00 0.00 3.21
14 15 4.954202 TCACGGATGGAGTAGAAGTTACAT 59.046 41.667 0.00 0.00 0.00 2.29
15 16 4.157289 GTCACGGATGGAGTAGAAGTTACA 59.843 45.833 0.00 0.00 0.00 2.41
16 17 4.670347 GTCACGGATGGAGTAGAAGTTAC 58.330 47.826 0.00 0.00 0.00 2.50
17 18 3.376234 CGTCACGGATGGAGTAGAAGTTA 59.624 47.826 0.00 0.00 0.00 2.24
18 19 2.163815 CGTCACGGATGGAGTAGAAGTT 59.836 50.000 0.00 0.00 0.00 2.66
19 20 1.743958 CGTCACGGATGGAGTAGAAGT 59.256 52.381 0.00 0.00 0.00 3.01
20 21 1.743958 ACGTCACGGATGGAGTAGAAG 59.256 52.381 0.35 0.00 0.00 2.85
21 22 1.830279 ACGTCACGGATGGAGTAGAA 58.170 50.000 0.35 0.00 0.00 2.10
22 23 1.830279 AACGTCACGGATGGAGTAGA 58.170 50.000 0.35 0.00 0.00 2.59
23 24 2.649331 AAACGTCACGGATGGAGTAG 57.351 50.000 0.35 0.00 0.00 2.57
24 25 3.061322 CAAAAACGTCACGGATGGAGTA 58.939 45.455 0.35 0.00 0.00 2.59
25 26 1.871039 CAAAAACGTCACGGATGGAGT 59.129 47.619 0.35 0.00 0.00 3.85
26 27 2.139917 TCAAAAACGTCACGGATGGAG 58.860 47.619 0.35 0.00 0.00 3.86
27 28 2.242047 TCAAAAACGTCACGGATGGA 57.758 45.000 0.35 0.00 0.00 3.41
28 29 3.242936 ACTTTCAAAAACGTCACGGATGG 60.243 43.478 0.35 0.00 0.00 3.51
29 30 3.947626 ACTTTCAAAAACGTCACGGATG 58.052 40.909 0.35 0.00 0.00 3.51
30 31 4.625972 AACTTTCAAAAACGTCACGGAT 57.374 36.364 0.35 0.00 0.00 4.18
31 32 5.542616 TTAACTTTCAAAAACGTCACGGA 57.457 34.783 0.35 0.00 0.00 4.69
32 33 6.087820 TGTTTTAACTTTCAAAAACGTCACGG 59.912 34.615 0.35 0.00 44.67 4.94
33 34 7.024336 TGTTTTAACTTTCAAAAACGTCACG 57.976 32.000 0.00 0.00 44.67 4.35
34 35 6.946037 GCTGTTTTAACTTTCAAAAACGTCAC 59.054 34.615 0.00 0.00 44.67 3.67
35 36 6.864165 AGCTGTTTTAACTTTCAAAAACGTCA 59.136 30.769 0.00 0.00 44.67 4.35
36 37 7.273188 AGCTGTTTTAACTTTCAAAAACGTC 57.727 32.000 0.00 1.84 44.67 4.34
37 38 7.506474 CAAGCTGTTTTAACTTTCAAAAACGT 58.494 30.769 0.00 0.00 44.67 3.99
38 39 6.461386 GCAAGCTGTTTTAACTTTCAAAAACG 59.539 34.615 0.00 0.00 44.67 3.60
39 40 7.294473 TGCAAGCTGTTTTAACTTTCAAAAAC 58.706 30.769 0.00 4.21 42.96 2.43
40 41 7.426929 TGCAAGCTGTTTTAACTTTCAAAAA 57.573 28.000 0.00 0.00 0.00 1.94
41 42 7.426929 TTGCAAGCTGTTTTAACTTTCAAAA 57.573 28.000 0.00 0.00 0.00 2.44
42 43 7.426929 TTTGCAAGCTGTTTTAACTTTCAAA 57.573 28.000 0.00 0.00 0.00 2.69
43 44 7.426929 TTTTGCAAGCTGTTTTAACTTTCAA 57.573 28.000 0.00 0.00 0.00 2.69
44 45 7.041780 TGTTTTTGCAAGCTGTTTTAACTTTCA 60.042 29.630 0.00 0.00 0.00 2.69
45 46 7.294473 TGTTTTTGCAAGCTGTTTTAACTTTC 58.706 30.769 0.00 0.00 0.00 2.62
46 47 7.195839 TGTTTTTGCAAGCTGTTTTAACTTT 57.804 28.000 0.00 0.00 0.00 2.66
47 48 6.793492 TGTTTTTGCAAGCTGTTTTAACTT 57.207 29.167 0.00 0.00 0.00 2.66
48 49 6.818142 AGATGTTTTTGCAAGCTGTTTTAACT 59.182 30.769 0.00 0.00 0.00 2.24
49 50 6.901357 CAGATGTTTTTGCAAGCTGTTTTAAC 59.099 34.615 0.00 0.00 0.00 2.01
50 51 6.815641 TCAGATGTTTTTGCAAGCTGTTTTAA 59.184 30.769 0.00 0.00 0.00 1.52
51 52 6.336566 TCAGATGTTTTTGCAAGCTGTTTTA 58.663 32.000 0.00 0.00 0.00 1.52
52 53 5.177326 TCAGATGTTTTTGCAAGCTGTTTT 58.823 33.333 0.00 0.00 0.00 2.43
53 54 4.757594 TCAGATGTTTTTGCAAGCTGTTT 58.242 34.783 0.00 0.00 0.00 2.83
54 55 4.389890 TCAGATGTTTTTGCAAGCTGTT 57.610 36.364 0.00 0.00 0.00 3.16
55 56 4.595762 ATCAGATGTTTTTGCAAGCTGT 57.404 36.364 0.00 0.00 0.00 4.40
56 57 8.867112 ATAATATCAGATGTTTTTGCAAGCTG 57.133 30.769 0.00 0.00 0.00 4.24
58 59 9.403110 CCTATAATATCAGATGTTTTTGCAAGC 57.597 33.333 0.00 0.00 0.00 4.01
61 62 8.773645 CGTCCTATAATATCAGATGTTTTTGCA 58.226 33.333 0.00 0.00 0.00 4.08
62 63 8.230486 CCGTCCTATAATATCAGATGTTTTTGC 58.770 37.037 0.00 0.00 0.00 3.68
63 64 9.489084 TCCGTCCTATAATATCAGATGTTTTTG 57.511 33.333 0.00 0.00 0.00 2.44
64 65 9.712305 CTCCGTCCTATAATATCAGATGTTTTT 57.288 33.333 0.00 0.00 0.00 1.94
65 66 8.314751 CCTCCGTCCTATAATATCAGATGTTTT 58.685 37.037 0.00 0.00 0.00 2.43
66 67 7.093289 CCCTCCGTCCTATAATATCAGATGTTT 60.093 40.741 0.00 0.00 0.00 2.83
67 68 6.381420 CCCTCCGTCCTATAATATCAGATGTT 59.619 42.308 0.00 0.00 0.00 2.71
68 69 5.894393 CCCTCCGTCCTATAATATCAGATGT 59.106 44.000 0.00 0.00 0.00 3.06
69 70 6.129874 TCCCTCCGTCCTATAATATCAGATG 58.870 44.000 0.00 0.00 0.00 2.90
70 71 6.068735 ACTCCCTCCGTCCTATAATATCAGAT 60.069 42.308 0.00 0.00 0.00 2.90
71 72 5.253330 ACTCCCTCCGTCCTATAATATCAGA 59.747 44.000 0.00 0.00 0.00 3.27
72 73 5.511363 ACTCCCTCCGTCCTATAATATCAG 58.489 45.833 0.00 0.00 0.00 2.90
73 74 5.531753 ACTCCCTCCGTCCTATAATATCA 57.468 43.478 0.00 0.00 0.00 2.15
74 75 7.061688 ACATACTCCCTCCGTCCTATAATATC 58.938 42.308 0.00 0.00 0.00 1.63
75 76 6.982899 ACATACTCCCTCCGTCCTATAATAT 58.017 40.000 0.00 0.00 0.00 1.28
76 77 6.012245 TGACATACTCCCTCCGTCCTATAATA 60.012 42.308 0.00 0.00 0.00 0.98
77 78 5.222275 TGACATACTCCCTCCGTCCTATAAT 60.222 44.000 0.00 0.00 0.00 1.28
78 79 4.105217 TGACATACTCCCTCCGTCCTATAA 59.895 45.833 0.00 0.00 0.00 0.98
79 80 3.654321 TGACATACTCCCTCCGTCCTATA 59.346 47.826 0.00 0.00 0.00 1.31
80 81 2.445905 TGACATACTCCCTCCGTCCTAT 59.554 50.000 0.00 0.00 0.00 2.57
81 82 1.848388 TGACATACTCCCTCCGTCCTA 59.152 52.381 0.00 0.00 0.00 2.94
82 83 0.629596 TGACATACTCCCTCCGTCCT 59.370 55.000 0.00 0.00 0.00 3.85
83 84 1.705873 ATGACATACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
84 85 4.142790 TCTAATGACATACTCCCTCCGTC 58.857 47.826 0.00 0.00 0.00 4.79
85 86 4.180377 TCTAATGACATACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
86 87 5.730296 AATCTAATGACATACTCCCTCCG 57.270 43.478 0.00 0.00 0.00 4.63
89 90 9.289782 GCATAAAAATCTAATGACATACTCCCT 57.710 33.333 0.00 0.00 0.00 4.20
90 91 8.515414 GGCATAAAAATCTAATGACATACTCCC 58.485 37.037 0.00 0.00 0.00 4.30
91 92 9.066892 TGGCATAAAAATCTAATGACATACTCC 57.933 33.333 0.00 0.00 33.73 3.85
93 94 9.632638 ACTGGCATAAAAATCTAATGACATACT 57.367 29.630 0.00 0.00 37.97 2.12
125 126 9.399797 TCATCTAAGTGACATTAGCATGAAATT 57.600 29.630 0.00 0.00 32.54 1.82
126 127 8.969260 TCATCTAAGTGACATTAGCATGAAAT 57.031 30.769 0.00 0.00 32.54 2.17
127 128 8.791327 TTCATCTAAGTGACATTAGCATGAAA 57.209 30.769 0.00 0.00 36.97 2.69
128 129 8.791327 TTTCATCTAAGTGACATTAGCATGAA 57.209 30.769 0.00 15.19 37.42 2.57
129 130 8.969260 ATTTCATCTAAGTGACATTAGCATGA 57.031 30.769 0.00 0.80 33.02 3.07
160 161 9.733556 TGGTTAGCTAGAATGAACTAAATTTCA 57.266 29.630 0.00 0.00 39.79 2.69
161 162 9.989869 GTGGTTAGCTAGAATGAACTAAATTTC 57.010 33.333 0.00 0.00 0.00 2.17
162 163 8.957466 GGTGGTTAGCTAGAATGAACTAAATTT 58.043 33.333 0.00 0.00 0.00 1.82
163 164 8.107095 TGGTGGTTAGCTAGAATGAACTAAATT 58.893 33.333 0.00 0.00 0.00 1.82
164 165 7.553044 GTGGTGGTTAGCTAGAATGAACTAAAT 59.447 37.037 0.00 0.00 0.00 1.40
165 166 6.877322 GTGGTGGTTAGCTAGAATGAACTAAA 59.123 38.462 0.00 0.00 0.00 1.85
166 167 6.403878 GTGGTGGTTAGCTAGAATGAACTAA 58.596 40.000 0.00 0.00 0.00 2.24
167 168 5.105064 GGTGGTGGTTAGCTAGAATGAACTA 60.105 44.000 0.00 0.00 0.00 2.24
168 169 4.323562 GGTGGTGGTTAGCTAGAATGAACT 60.324 45.833 0.00 0.00 0.00 3.01
169 170 3.939592 GGTGGTGGTTAGCTAGAATGAAC 59.060 47.826 0.00 0.00 0.00 3.18
170 171 3.054655 GGGTGGTGGTTAGCTAGAATGAA 60.055 47.826 0.00 0.00 0.00 2.57
171 172 2.504175 GGGTGGTGGTTAGCTAGAATGA 59.496 50.000 0.00 0.00 0.00 2.57
172 173 2.505819 AGGGTGGTGGTTAGCTAGAATG 59.494 50.000 0.00 0.00 0.00 2.67
173 174 2.846950 AGGGTGGTGGTTAGCTAGAAT 58.153 47.619 0.00 0.00 0.00 2.40
211 212 1.003464 TGCATTTGGAGTGCAGAGCTA 59.997 47.619 0.00 0.00 46.76 3.32
252 253 8.145122 TGAACTAAATTTGTTTCATGGTTACCC 58.855 33.333 10.63 0.00 0.00 3.69
253 254 9.705290 ATGAACTAAATTTGTTTCATGGTTACC 57.295 29.630 20.18 0.00 0.00 2.85
265 266 9.515226 TGGTTAGCTAGAATGAACTAAATTTGT 57.485 29.630 0.00 0.00 0.00 2.83
266 267 9.774742 GTGGTTAGCTAGAATGAACTAAATTTG 57.225 33.333 0.00 0.00 0.00 2.32
267 268 8.957466 GGTGGTTAGCTAGAATGAACTAAATTT 58.043 33.333 0.00 0.00 0.00 1.82
268 269 8.107095 TGGTGGTTAGCTAGAATGAACTAAATT 58.893 33.333 0.00 0.00 0.00 1.82
269 270 7.553044 GTGGTGGTTAGCTAGAATGAACTAAAT 59.447 37.037 0.00 0.00 0.00 1.40
270 271 6.877322 GTGGTGGTTAGCTAGAATGAACTAAA 59.123 38.462 0.00 0.00 0.00 1.85
271 272 6.403878 GTGGTGGTTAGCTAGAATGAACTAA 58.596 40.000 0.00 0.00 0.00 2.24
272 273 5.105064 GGTGGTGGTTAGCTAGAATGAACTA 60.105 44.000 0.00 0.00 0.00 2.24
273 274 4.323562 GGTGGTGGTTAGCTAGAATGAACT 60.324 45.833 0.00 0.00 0.00 3.01
274 275 3.939592 GGTGGTGGTTAGCTAGAATGAAC 59.060 47.826 0.00 0.00 0.00 3.18
275 276 3.054655 GGGTGGTGGTTAGCTAGAATGAA 60.055 47.826 0.00 0.00 0.00 2.57
276 277 2.504175 GGGTGGTGGTTAGCTAGAATGA 59.496 50.000 0.00 0.00 0.00 2.57
277 278 2.505819 AGGGTGGTGGTTAGCTAGAATG 59.494 50.000 0.00 0.00 0.00 2.67
278 279 2.846950 AGGGTGGTGGTTAGCTAGAAT 58.153 47.619 0.00 0.00 0.00 2.40
279 280 2.337359 AGGGTGGTGGTTAGCTAGAA 57.663 50.000 0.00 0.00 0.00 2.10
280 281 2.584031 TCTAGGGTGGTGGTTAGCTAGA 59.416 50.000 0.00 0.00 0.00 2.43
281 282 3.028094 TCTAGGGTGGTGGTTAGCTAG 57.972 52.381 0.00 0.00 0.00 3.42
282 283 3.371965 CTTCTAGGGTGGTGGTTAGCTA 58.628 50.000 0.00 0.00 0.00 3.32
283 284 2.188817 CTTCTAGGGTGGTGGTTAGCT 58.811 52.381 0.00 0.00 0.00 3.32
284 285 1.407025 GCTTCTAGGGTGGTGGTTAGC 60.407 57.143 0.00 0.00 0.00 3.09
285 286 1.209747 GGCTTCTAGGGTGGTGGTTAG 59.790 57.143 0.00 0.00 0.00 2.34
286 287 1.203389 AGGCTTCTAGGGTGGTGGTTA 60.203 52.381 0.00 0.00 0.00 2.85
287 288 0.475828 AGGCTTCTAGGGTGGTGGTT 60.476 55.000 0.00 0.00 0.00 3.67
288 289 0.475828 AAGGCTTCTAGGGTGGTGGT 60.476 55.000 0.00 0.00 0.00 4.16
289 290 0.698818 AAAGGCTTCTAGGGTGGTGG 59.301 55.000 0.00 0.00 0.00 4.61
290 291 2.040412 AGAAAAGGCTTCTAGGGTGGTG 59.960 50.000 0.00 0.00 0.00 4.17
291 292 2.349445 AGAAAAGGCTTCTAGGGTGGT 58.651 47.619 0.00 0.00 0.00 4.16
292 293 3.682999 GCTAGAAAAGGCTTCTAGGGTGG 60.683 52.174 19.77 1.71 44.95 4.61
293 294 3.055094 TGCTAGAAAAGGCTTCTAGGGTG 60.055 47.826 19.77 2.01 44.95 4.61
294 295 3.182152 TGCTAGAAAAGGCTTCTAGGGT 58.818 45.455 19.77 0.00 44.95 4.34
295 296 3.914426 TGCTAGAAAAGGCTTCTAGGG 57.086 47.619 19.77 5.55 44.95 3.53
296 297 4.994217 GCTATGCTAGAAAAGGCTTCTAGG 59.006 45.833 19.77 8.37 44.95 3.02
297 298 5.852827 AGCTATGCTAGAAAAGGCTTCTAG 58.147 41.667 15.82 15.82 46.60 2.43
298 299 5.600484 AGAGCTATGCTAGAAAAGGCTTCTA 59.400 40.000 0.00 0.00 39.88 2.10
299 300 4.408596 AGAGCTATGCTAGAAAAGGCTTCT 59.591 41.667 0.00 0.00 39.88 2.85
300 301 4.511082 CAGAGCTATGCTAGAAAAGGCTTC 59.489 45.833 0.00 0.00 39.88 3.86
301 302 4.450053 CAGAGCTATGCTAGAAAAGGCTT 58.550 43.478 0.00 0.00 39.88 4.35
302 303 3.743899 GCAGAGCTATGCTAGAAAAGGCT 60.744 47.826 25.63 0.00 43.07 4.58
303 304 2.547634 GCAGAGCTATGCTAGAAAAGGC 59.452 50.000 25.63 0.00 43.07 4.35
304 305 3.559242 GTGCAGAGCTATGCTAGAAAAGG 59.441 47.826 31.40 0.00 46.63 3.11
305 306 4.440880 AGTGCAGAGCTATGCTAGAAAAG 58.559 43.478 31.40 0.00 46.63 2.27
306 307 4.437239 GAGTGCAGAGCTATGCTAGAAAA 58.563 43.478 31.40 9.75 46.63 2.29
307 308 3.181471 GGAGTGCAGAGCTATGCTAGAAA 60.181 47.826 31.40 10.51 46.63 2.52
308 309 2.363680 GGAGTGCAGAGCTATGCTAGAA 59.636 50.000 31.40 10.91 46.63 2.10
309 310 1.959985 GGAGTGCAGAGCTATGCTAGA 59.040 52.381 31.40 11.29 46.63 2.43
310 311 1.685517 TGGAGTGCAGAGCTATGCTAG 59.314 52.381 31.40 0.00 46.63 3.42
311 312 1.780503 TGGAGTGCAGAGCTATGCTA 58.219 50.000 31.40 16.68 46.63 3.49
312 313 0.907486 TTGGAGTGCAGAGCTATGCT 59.093 50.000 31.40 14.76 46.63 3.79
313 314 1.742761 TTTGGAGTGCAGAGCTATGC 58.257 50.000 26.11 26.11 46.68 3.14
314 315 2.033049 GCATTTGGAGTGCAGAGCTATG 59.967 50.000 3.34 3.34 42.08 2.23
315 316 2.295885 GCATTTGGAGTGCAGAGCTAT 58.704 47.619 0.00 0.00 42.08 2.97
316 317 1.003464 TGCATTTGGAGTGCAGAGCTA 59.997 47.619 0.00 0.00 46.76 3.32
317 318 0.251033 TGCATTTGGAGTGCAGAGCT 60.251 50.000 0.00 0.00 46.76 4.09
318 319 2.260247 TGCATTTGGAGTGCAGAGC 58.740 52.632 0.00 0.00 46.76 4.09
323 324 2.991190 CAAAGACATGCATTTGGAGTGC 59.009 45.455 13.02 0.00 42.81 4.40
324 325 4.247267 ACAAAGACATGCATTTGGAGTG 57.753 40.909 20.95 4.08 40.05 3.51
325 326 4.557296 CGAACAAAGACATGCATTTGGAGT 60.557 41.667 20.95 10.30 40.05 3.85
326 327 3.916172 CGAACAAAGACATGCATTTGGAG 59.084 43.478 20.95 11.55 40.05 3.86
327 328 3.567585 TCGAACAAAGACATGCATTTGGA 59.432 39.130 20.95 10.46 40.05 3.53
328 329 3.899734 TCGAACAAAGACATGCATTTGG 58.100 40.909 20.95 8.84 40.05 3.28
329 330 5.886715 TTTCGAACAAAGACATGCATTTG 57.113 34.783 17.30 17.30 41.22 2.32
330 331 6.312426 TGTTTTTCGAACAAAGACATGCATTT 59.688 30.769 0.00 0.00 0.00 2.32
331 332 5.809562 TGTTTTTCGAACAAAGACATGCATT 59.190 32.000 0.00 0.00 0.00 3.56
332 333 5.347342 TGTTTTTCGAACAAAGACATGCAT 58.653 33.333 0.00 0.00 0.00 3.96
333 334 4.738124 TGTTTTTCGAACAAAGACATGCA 58.262 34.783 0.00 0.00 0.00 3.96
334 335 5.276348 CCTTGTTTTTCGAACAAAGACATGC 60.276 40.000 0.00 0.00 39.36 4.06
335 336 5.231991 CCCTTGTTTTTCGAACAAAGACATG 59.768 40.000 0.00 0.00 39.36 3.21
336 337 5.105513 ACCCTTGTTTTTCGAACAAAGACAT 60.106 36.000 0.00 0.00 39.36 3.06
337 338 4.218852 ACCCTTGTTTTTCGAACAAAGACA 59.781 37.500 0.00 0.00 39.36 3.41
338 339 4.740268 ACCCTTGTTTTTCGAACAAAGAC 58.260 39.130 0.00 0.00 39.36 3.01
339 340 6.324042 GTTACCCTTGTTTTTCGAACAAAGA 58.676 36.000 0.00 0.00 39.36 2.52
340 341 5.517411 GGTTACCCTTGTTTTTCGAACAAAG 59.483 40.000 0.00 0.00 39.36 2.77
341 342 5.047519 TGGTTACCCTTGTTTTTCGAACAAA 60.048 36.000 0.00 0.00 39.36 2.83
342 343 4.461781 TGGTTACCCTTGTTTTTCGAACAA 59.538 37.500 0.00 0.00 37.76 2.83
343 344 4.015084 TGGTTACCCTTGTTTTTCGAACA 58.985 39.130 0.00 0.00 0.00 3.18
344 345 4.635833 TGGTTACCCTTGTTTTTCGAAC 57.364 40.909 0.00 0.00 0.00 3.95
345 346 4.888239 TCATGGTTACCCTTGTTTTTCGAA 59.112 37.500 0.00 0.00 37.23 3.71
346 347 4.462133 TCATGGTTACCCTTGTTTTTCGA 58.538 39.130 0.00 0.00 37.23 3.71
347 348 4.839668 TCATGGTTACCCTTGTTTTTCG 57.160 40.909 0.00 0.00 37.23 3.46
348 349 5.460748 CGTTTCATGGTTACCCTTGTTTTTC 59.539 40.000 0.00 0.00 37.23 2.29
349 350 5.353111 CGTTTCATGGTTACCCTTGTTTTT 58.647 37.500 0.00 0.00 37.23 1.94
350 351 4.738243 GCGTTTCATGGTTACCCTTGTTTT 60.738 41.667 0.00 0.00 37.23 2.43
351 352 3.243602 GCGTTTCATGGTTACCCTTGTTT 60.244 43.478 0.00 0.00 37.23 2.83
352 353 2.295070 GCGTTTCATGGTTACCCTTGTT 59.705 45.455 0.00 0.00 37.23 2.83
353 354 1.883926 GCGTTTCATGGTTACCCTTGT 59.116 47.619 0.00 0.00 37.23 3.16
354 355 2.159382 AGCGTTTCATGGTTACCCTTG 58.841 47.619 0.00 0.00 37.26 3.61
355 356 2.579410 AGCGTTTCATGGTTACCCTT 57.421 45.000 0.00 0.00 0.00 3.95
356 357 2.224670 TGAAGCGTTTCATGGTTACCCT 60.225 45.455 10.92 0.00 38.37 4.34
364 365 1.470098 CCTTCCCTGAAGCGTTTCATG 59.530 52.381 15.35 12.26 42.19 3.07
378 379 0.753867 GAGGATCTCGTTCCCTTCCC 59.246 60.000 0.00 0.00 36.35 3.97
391 392 7.108847 CCATCCCTTCATAATGTTAGAGGATC 58.891 42.308 0.00 0.00 29.18 3.36
392 393 6.564152 ACCATCCCTTCATAATGTTAGAGGAT 59.436 38.462 0.00 0.00 31.82 3.24
393 394 5.911178 ACCATCCCTTCATAATGTTAGAGGA 59.089 40.000 0.00 0.00 0.00 3.71
394 395 6.192970 ACCATCCCTTCATAATGTTAGAGG 57.807 41.667 0.00 0.00 0.00 3.69
395 396 7.390027 CCTACCATCCCTTCATAATGTTAGAG 58.610 42.308 0.00 0.00 0.00 2.43
396 397 6.272324 CCCTACCATCCCTTCATAATGTTAGA 59.728 42.308 0.00 0.00 0.00 2.10
397 398 6.272324 TCCCTACCATCCCTTCATAATGTTAG 59.728 42.308 0.00 0.00 0.00 2.34
398 399 6.154645 TCCCTACCATCCCTTCATAATGTTA 58.845 40.000 0.00 0.00 0.00 2.41
399 400 4.981647 TCCCTACCATCCCTTCATAATGTT 59.018 41.667 0.00 0.00 0.00 2.71
400 401 4.577096 TCCCTACCATCCCTTCATAATGT 58.423 43.478 0.00 0.00 0.00 2.71
401 402 5.564550 CTTCCCTACCATCCCTTCATAATG 58.435 45.833 0.00 0.00 0.00 1.90
402 403 4.043435 GCTTCCCTACCATCCCTTCATAAT 59.957 45.833 0.00 0.00 0.00 1.28
403 404 3.394606 GCTTCCCTACCATCCCTTCATAA 59.605 47.826 0.00 0.00 0.00 1.90
404 405 2.979678 GCTTCCCTACCATCCCTTCATA 59.020 50.000 0.00 0.00 0.00 2.15
405 406 1.777272 GCTTCCCTACCATCCCTTCAT 59.223 52.381 0.00 0.00 0.00 2.57
406 407 1.213296 GCTTCCCTACCATCCCTTCA 58.787 55.000 0.00 0.00 0.00 3.02
407 408 1.512735 AGCTTCCCTACCATCCCTTC 58.487 55.000 0.00 0.00 0.00 3.46
408 409 2.293586 TGTAGCTTCCCTACCATCCCTT 60.294 50.000 0.00 0.00 44.77 3.95
409 410 1.294068 TGTAGCTTCCCTACCATCCCT 59.706 52.381 0.00 0.00 44.77 4.20
410 411 1.694696 CTGTAGCTTCCCTACCATCCC 59.305 57.143 0.00 0.00 44.77 3.85
411 412 2.399580 ACTGTAGCTTCCCTACCATCC 58.600 52.381 0.00 0.00 44.77 3.51
412 413 3.321396 GGTACTGTAGCTTCCCTACCATC 59.679 52.174 9.64 0.00 44.77 3.51
413 414 3.306613 GGTACTGTAGCTTCCCTACCAT 58.693 50.000 9.64 0.00 44.77 3.55
414 415 2.625087 GGGTACTGTAGCTTCCCTACCA 60.625 54.545 15.74 0.00 44.77 3.25
415 416 2.037901 GGGTACTGTAGCTTCCCTACC 58.962 57.143 15.74 0.00 44.77 3.18
416 417 2.694109 CAGGGTACTGTAGCTTCCCTAC 59.306 54.545 15.74 0.00 45.64 3.18
417 418 2.584031 TCAGGGTACTGTAGCTTCCCTA 59.416 50.000 15.74 2.84 45.64 3.53
419 420 1.481363 GTCAGGGTACTGTAGCTTCCC 59.519 57.143 15.74 9.60 45.14 3.97
420 421 2.176889 TGTCAGGGTACTGTAGCTTCC 58.823 52.381 15.74 0.70 45.14 3.46
421 422 3.181474 GGATGTCAGGGTACTGTAGCTTC 60.181 52.174 15.74 1.62 45.14 3.86
422 423 2.766828 GGATGTCAGGGTACTGTAGCTT 59.233 50.000 15.74 6.40 45.14 3.74
423 424 2.389715 GGATGTCAGGGTACTGTAGCT 58.610 52.381 15.74 0.00 45.14 3.32
424 425 1.413077 GGGATGTCAGGGTACTGTAGC 59.587 57.143 8.46 8.46 45.14 3.58
425 426 3.033659 AGGGATGTCAGGGTACTGTAG 57.966 52.381 0.00 0.00 45.14 2.74
426 427 3.012502 AGAAGGGATGTCAGGGTACTGTA 59.987 47.826 0.00 0.00 45.14 2.74
427 428 2.188817 GAAGGGATGTCAGGGTACTGT 58.811 52.381 0.00 0.00 45.14 3.55
428 429 2.472029 AGAAGGGATGTCAGGGTACTG 58.528 52.381 0.00 0.00 46.30 2.74
429 430 2.950990 AGAAGGGATGTCAGGGTACT 57.049 50.000 0.00 0.00 0.00 2.73
430 431 2.838202 TGAAGAAGGGATGTCAGGGTAC 59.162 50.000 0.00 0.00 0.00 3.34
431 432 2.838202 GTGAAGAAGGGATGTCAGGGTA 59.162 50.000 0.00 0.00 0.00 3.69
432 433 1.630878 GTGAAGAAGGGATGTCAGGGT 59.369 52.381 0.00 0.00 0.00 4.34
433 434 1.630369 TGTGAAGAAGGGATGTCAGGG 59.370 52.381 0.00 0.00 0.00 4.45
434 435 3.539604 GATGTGAAGAAGGGATGTCAGG 58.460 50.000 0.00 0.00 0.00 3.86
435 436 3.054875 TGGATGTGAAGAAGGGATGTCAG 60.055 47.826 0.00 0.00 0.00 3.51
436 437 2.912295 TGGATGTGAAGAAGGGATGTCA 59.088 45.455 0.00 0.00 0.00 3.58
437 438 3.634397 TGGATGTGAAGAAGGGATGTC 57.366 47.619 0.00 0.00 0.00 3.06
438 439 5.370584 TCATATGGATGTGAAGAAGGGATGT 59.629 40.000 2.13 0.00 34.41 3.06
439 440 5.872963 TCATATGGATGTGAAGAAGGGATG 58.127 41.667 2.13 0.00 34.41 3.51
440 441 6.715350 ATCATATGGATGTGAAGAAGGGAT 57.285 37.500 2.13 0.00 34.06 3.85
441 442 6.520021 AATCATATGGATGTGAAGAAGGGA 57.480 37.500 2.13 0.00 36.02 4.20
442 443 7.094463 GCTTAATCATATGGATGTGAAGAAGGG 60.094 40.741 2.13 0.00 36.02 3.95
443 444 7.094463 GGCTTAATCATATGGATGTGAAGAAGG 60.094 40.741 2.13 0.00 36.02 3.46
444 445 7.664731 AGGCTTAATCATATGGATGTGAAGAAG 59.335 37.037 2.13 0.00 36.02 2.85
445 446 7.520798 AGGCTTAATCATATGGATGTGAAGAA 58.479 34.615 2.13 0.00 36.02 2.52
446 447 7.083062 AGGCTTAATCATATGGATGTGAAGA 57.917 36.000 2.13 0.00 36.02 2.87
447 448 8.853077 TTAGGCTTAATCATATGGATGTGAAG 57.147 34.615 2.13 0.56 36.02 3.02
448 449 9.639563 TTTTAGGCTTAATCATATGGATGTGAA 57.360 29.630 2.13 0.00 36.02 3.18
449 450 9.812347 ATTTTAGGCTTAATCATATGGATGTGA 57.188 29.630 2.13 0.00 36.02 3.58
450 451 9.850628 CATTTTAGGCTTAATCATATGGATGTG 57.149 33.333 2.13 0.00 36.02 3.21
451 452 9.812347 TCATTTTAGGCTTAATCATATGGATGT 57.188 29.630 2.13 0.00 36.02 3.06
454 455 9.866655 AAGTCATTTTAGGCTTAATCATATGGA 57.133 29.630 2.13 0.00 0.00 3.41
466 467 9.639601 GCAAATTAGTTTAAGTCATTTTAGGCT 57.360 29.630 0.00 0.00 0.00 4.58
467 468 9.418045 TGCAAATTAGTTTAAGTCATTTTAGGC 57.582 29.630 0.00 0.00 0.00 3.93
575 576 6.209361 TGTGCGCAATTACTGTTCATAAAAA 58.791 32.000 14.00 0.00 0.00 1.94
576 577 5.763088 TGTGCGCAATTACTGTTCATAAAA 58.237 33.333 14.00 0.00 0.00 1.52
577 578 5.363979 TGTGCGCAATTACTGTTCATAAA 57.636 34.783 14.00 0.00 0.00 1.40
578 579 5.559427 ATGTGCGCAATTACTGTTCATAA 57.441 34.783 14.00 0.00 0.00 1.90
579 580 5.559427 AATGTGCGCAATTACTGTTCATA 57.441 34.783 14.00 0.00 0.00 2.15
580 581 4.439305 AATGTGCGCAATTACTGTTCAT 57.561 36.364 14.00 4.90 0.00 2.57
581 582 3.913548 AATGTGCGCAATTACTGTTCA 57.086 38.095 14.00 2.05 0.00 3.18
582 583 5.810525 AGATAATGTGCGCAATTACTGTTC 58.189 37.500 14.00 12.19 0.00 3.18
583 584 5.818136 AGATAATGTGCGCAATTACTGTT 57.182 34.783 14.00 4.00 0.00 3.16
584 585 5.502382 CGAAGATAATGTGCGCAATTACTGT 60.502 40.000 14.00 4.35 0.00 3.55
585 586 4.900182 CGAAGATAATGTGCGCAATTACTG 59.100 41.667 14.00 4.68 0.00 2.74
586 587 4.552767 GCGAAGATAATGTGCGCAATTACT 60.553 41.667 14.00 14.09 46.19 2.24
587 588 3.659444 GCGAAGATAATGTGCGCAATTAC 59.341 43.478 14.00 12.38 46.19 1.89
588 589 3.872354 GCGAAGATAATGTGCGCAATTA 58.128 40.909 14.00 18.09 46.19 1.40
589 590 2.719798 GCGAAGATAATGTGCGCAATT 58.280 42.857 14.00 16.48 46.19 2.32
590 591 2.389713 GCGAAGATAATGTGCGCAAT 57.610 45.000 14.00 0.25 46.19 3.56
591 592 3.895806 GCGAAGATAATGTGCGCAA 57.104 47.368 14.00 2.60 46.19 4.85
594 595 3.060940 CACTGTAGCGAAGATAATGTGCG 60.061 47.826 0.00 0.00 30.32 5.34
595 596 3.302740 GCACTGTAGCGAAGATAATGTGC 60.303 47.826 0.00 0.00 46.04 4.57
596 597 3.246226 GGCACTGTAGCGAAGATAATGTG 59.754 47.826 0.00 0.00 37.09 3.21
597 598 3.458189 GGCACTGTAGCGAAGATAATGT 58.542 45.455 0.00 0.00 34.64 2.71
598 599 2.472861 CGGCACTGTAGCGAAGATAATG 59.527 50.000 0.00 0.00 34.64 1.90
599 600 2.545952 CCGGCACTGTAGCGAAGATAAT 60.546 50.000 0.00 0.00 34.64 1.28
600 601 1.202371 CCGGCACTGTAGCGAAGATAA 60.202 52.381 0.00 0.00 34.64 1.75
601 602 0.384309 CCGGCACTGTAGCGAAGATA 59.616 55.000 0.00 0.00 34.64 1.98
602 603 1.141881 CCGGCACTGTAGCGAAGAT 59.858 57.895 0.00 0.00 34.64 2.40
603 604 2.273179 ACCGGCACTGTAGCGAAGA 61.273 57.895 0.00 0.00 34.64 2.87
604 605 2.094659 CACCGGCACTGTAGCGAAG 61.095 63.158 0.00 0.00 34.64 3.79
605 606 2.048597 CACCGGCACTGTAGCGAA 60.049 61.111 0.00 0.00 34.64 4.70
606 607 2.986979 TCACCGGCACTGTAGCGA 60.987 61.111 0.00 0.00 34.64 4.93
607 608 2.809601 GTCACCGGCACTGTAGCG 60.810 66.667 0.00 0.00 34.64 4.26
608 609 1.079127 ATGTCACCGGCACTGTAGC 60.079 57.895 0.00 0.00 0.00 3.58
609 610 0.460284 GGATGTCACCGGCACTGTAG 60.460 60.000 0.00 0.00 0.00 2.74
610 611 1.594833 GGATGTCACCGGCACTGTA 59.405 57.895 0.00 0.00 0.00 2.74
611 612 2.347490 GGATGTCACCGGCACTGT 59.653 61.111 0.00 0.00 0.00 3.55
612 613 2.436646 GGGATGTCACCGGCACTG 60.437 66.667 0.00 0.00 0.00 3.66
613 614 2.185310 GAAGGGATGTCACCGGCACT 62.185 60.000 0.00 0.00 0.00 4.40
614 615 1.745489 GAAGGGATGTCACCGGCAC 60.745 63.158 0.00 0.00 0.00 5.01
615 616 1.488705 AAGAAGGGATGTCACCGGCA 61.489 55.000 0.00 0.00 0.00 5.69
616 617 0.744771 GAAGAAGGGATGTCACCGGC 60.745 60.000 0.00 0.00 0.00 6.13
617 618 0.107654 GGAAGAAGGGATGTCACCGG 60.108 60.000 0.00 0.00 0.00 5.28
618 619 0.905357 AGGAAGAAGGGATGTCACCG 59.095 55.000 0.00 0.00 0.00 4.94
619 620 3.441500 AAAGGAAGAAGGGATGTCACC 57.558 47.619 0.00 0.00 0.00 4.02
620 621 3.057245 GCAAAAGGAAGAAGGGATGTCAC 60.057 47.826 0.00 0.00 0.00 3.67
621 622 3.157087 GCAAAAGGAAGAAGGGATGTCA 58.843 45.455 0.00 0.00 0.00 3.58
622 623 3.057245 GTGCAAAAGGAAGAAGGGATGTC 60.057 47.826 0.00 0.00 0.00 3.06
623 624 2.893489 GTGCAAAAGGAAGAAGGGATGT 59.107 45.455 0.00 0.00 0.00 3.06
624 625 3.057033 CAGTGCAAAAGGAAGAAGGGATG 60.057 47.826 0.00 0.00 0.00 3.51
625 626 3.160269 CAGTGCAAAAGGAAGAAGGGAT 58.840 45.455 0.00 0.00 0.00 3.85
626 627 2.586425 CAGTGCAAAAGGAAGAAGGGA 58.414 47.619 0.00 0.00 0.00 4.20
627 628 1.615392 CCAGTGCAAAAGGAAGAAGGG 59.385 52.381 0.00 0.00 0.00 3.95
628 629 1.615392 CCCAGTGCAAAAGGAAGAAGG 59.385 52.381 0.00 0.00 0.00 3.46
629 630 2.586425 TCCCAGTGCAAAAGGAAGAAG 58.414 47.619 0.00 0.00 0.00 2.85
630 631 2.746279 TCCCAGTGCAAAAGGAAGAA 57.254 45.000 0.00 0.00 0.00 2.52
631 632 2.892852 CAATCCCAGTGCAAAAGGAAGA 59.107 45.455 4.13 0.00 30.71 2.87
632 633 2.611224 GCAATCCCAGTGCAAAAGGAAG 60.611 50.000 4.13 2.37 41.80 3.46
633 634 1.344114 GCAATCCCAGTGCAAAAGGAA 59.656 47.619 4.13 0.00 41.80 3.36
634 635 0.968405 GCAATCCCAGTGCAAAAGGA 59.032 50.000 2.59 2.59 41.80 3.36
635 636 3.520187 GCAATCCCAGTGCAAAAGG 57.480 52.632 0.00 0.00 41.80 3.11
641 642 1.089920 CTACAGTGCAATCCCAGTGC 58.910 55.000 0.00 0.00 39.26 4.40
642 643 1.089920 GCTACAGTGCAATCCCAGTG 58.910 55.000 0.00 0.00 40.99 3.66
643 644 0.987294 AGCTACAGTGCAATCCCAGT 59.013 50.000 0.00 0.00 34.99 4.00
644 645 2.012673 GAAGCTACAGTGCAATCCCAG 58.987 52.381 0.00 0.00 34.99 4.45
645 646 1.350684 TGAAGCTACAGTGCAATCCCA 59.649 47.619 0.00 0.00 34.99 4.37
646 647 2.113860 TGAAGCTACAGTGCAATCCC 57.886 50.000 0.00 0.00 34.99 3.85
647 648 3.064545 GTCATGAAGCTACAGTGCAATCC 59.935 47.826 0.00 0.00 34.99 3.01
648 649 3.686241 TGTCATGAAGCTACAGTGCAATC 59.314 43.478 0.00 0.00 34.99 2.67
649 650 3.678289 TGTCATGAAGCTACAGTGCAAT 58.322 40.909 0.00 0.00 34.99 3.56
650 651 3.124578 TGTCATGAAGCTACAGTGCAA 57.875 42.857 0.00 0.00 34.99 4.08
651 652 2.837532 TGTCATGAAGCTACAGTGCA 57.162 45.000 0.00 0.00 34.99 4.57
652 653 2.611292 GGATGTCATGAAGCTACAGTGC 59.389 50.000 0.00 0.00 0.00 4.40
653 654 3.118482 AGGGATGTCATGAAGCTACAGTG 60.118 47.826 0.00 0.00 0.00 3.66
654 655 3.110705 AGGGATGTCATGAAGCTACAGT 58.889 45.455 0.00 0.00 0.00 3.55
655 656 3.834489 AGGGATGTCATGAAGCTACAG 57.166 47.619 0.00 0.00 0.00 2.74
656 657 3.519107 TGAAGGGATGTCATGAAGCTACA 59.481 43.478 0.00 0.00 0.00 2.74
657 658 4.142609 TGAAGGGATGTCATGAAGCTAC 57.857 45.455 0.00 0.00 0.00 3.58
658 659 6.499106 TTATGAAGGGATGTCATGAAGCTA 57.501 37.500 0.00 0.00 36.41 3.32
659 660 3.947612 ATGAAGGGATGTCATGAAGCT 57.052 42.857 0.00 0.00 34.40 3.74
660 661 5.533903 ACATTATGAAGGGATGTCATGAAGC 59.466 40.000 0.00 0.00 36.41 3.86
661 662 7.578310 AACATTATGAAGGGATGTCATGAAG 57.422 36.000 0.00 0.00 36.41 3.02
662 663 8.493607 TCTAACATTATGAAGGGATGTCATGAA 58.506 33.333 0.00 0.00 36.41 2.57
663 664 8.033178 TCTAACATTATGAAGGGATGTCATGA 57.967 34.615 0.00 0.00 36.41 3.07
664 665 8.152898 TCTCTAACATTATGAAGGGATGTCATG 58.847 37.037 0.00 0.00 36.41 3.07
665 666 8.267620 TCTCTAACATTATGAAGGGATGTCAT 57.732 34.615 0.00 0.00 39.12 3.06
666 667 7.675161 TCTCTAACATTATGAAGGGATGTCA 57.325 36.000 0.00 0.00 33.16 3.58
667 668 9.213799 GATTCTCTAACATTATGAAGGGATGTC 57.786 37.037 0.00 0.64 33.16 3.06
668 669 8.160106 GGATTCTCTAACATTATGAAGGGATGT 58.840 37.037 0.00 0.00 35.65 3.06
669 670 8.159447 TGGATTCTCTAACATTATGAAGGGATG 58.841 37.037 0.00 0.00 0.00 3.51
670 671 8.280258 TGGATTCTCTAACATTATGAAGGGAT 57.720 34.615 0.00 0.00 0.00 3.85
671 672 7.690454 TGGATTCTCTAACATTATGAAGGGA 57.310 36.000 0.00 0.00 0.00 4.20
672 673 8.930846 AATGGATTCTCTAACATTATGAAGGG 57.069 34.615 0.00 0.00 32.25 3.95
675 676 9.056005 CGGAAATGGATTCTCTAACATTATGAA 57.944 33.333 0.00 0.00 38.18 2.57
676 677 7.661437 CCGGAAATGGATTCTCTAACATTATGA 59.339 37.037 0.00 0.00 38.18 2.15
677 678 7.445402 ACCGGAAATGGATTCTCTAACATTATG 59.555 37.037 9.46 0.00 38.18 1.90
678 679 7.518188 ACCGGAAATGGATTCTCTAACATTAT 58.482 34.615 9.46 0.00 38.18 1.28
679 680 6.895782 ACCGGAAATGGATTCTCTAACATTA 58.104 36.000 9.46 0.00 38.18 1.90
680 681 5.755849 ACCGGAAATGGATTCTCTAACATT 58.244 37.500 9.46 0.00 38.18 2.71
681 682 5.373812 ACCGGAAATGGATTCTCTAACAT 57.626 39.130 9.46 0.00 38.18 2.71
682 683 4.837093 ACCGGAAATGGATTCTCTAACA 57.163 40.909 9.46 0.00 38.18 2.41
683 684 4.743644 CGTACCGGAAATGGATTCTCTAAC 59.256 45.833 9.46 0.00 38.18 2.34
684 685 4.646040 TCGTACCGGAAATGGATTCTCTAA 59.354 41.667 9.46 0.00 38.18 2.10
685 686 4.209538 TCGTACCGGAAATGGATTCTCTA 58.790 43.478 9.46 0.00 38.18 2.43
686 687 3.028850 TCGTACCGGAAATGGATTCTCT 58.971 45.455 9.46 0.00 38.18 3.10
687 688 3.447918 TCGTACCGGAAATGGATTCTC 57.552 47.619 9.46 0.00 38.18 2.87
688 689 3.431766 CCTTCGTACCGGAAATGGATTCT 60.432 47.826 9.46 0.00 38.18 2.40
689 690 2.870411 CCTTCGTACCGGAAATGGATTC 59.130 50.000 9.46 0.00 37.31 2.52
690 691 2.420967 CCCTTCGTACCGGAAATGGATT 60.421 50.000 9.46 0.00 0.00 3.01
691 692 1.140252 CCCTTCGTACCGGAAATGGAT 59.860 52.381 9.46 0.00 0.00 3.41
692 693 0.538118 CCCTTCGTACCGGAAATGGA 59.462 55.000 9.46 0.00 0.00 3.41
693 694 0.538118 TCCCTTCGTACCGGAAATGG 59.462 55.000 9.46 3.63 0.00 3.16
694 695 1.479323 TCTCCCTTCGTACCGGAAATG 59.521 52.381 9.46 0.64 0.00 2.32
695 696 1.755380 CTCTCCCTTCGTACCGGAAAT 59.245 52.381 9.46 0.00 0.00 2.17
696 697 1.180029 CTCTCCCTTCGTACCGGAAA 58.820 55.000 9.46 0.00 0.00 3.13
697 698 0.682209 CCTCTCCCTTCGTACCGGAA 60.682 60.000 9.46 0.00 0.00 4.30
698 699 1.077212 CCTCTCCCTTCGTACCGGA 60.077 63.158 9.46 0.00 0.00 5.14
699 700 1.077212 TCCTCTCCCTTCGTACCGG 60.077 63.158 0.00 0.00 0.00 5.28
700 701 1.102222 CCTCCTCTCCCTTCGTACCG 61.102 65.000 0.00 0.00 0.00 4.02
701 702 0.756070 CCCTCCTCTCCCTTCGTACC 60.756 65.000 0.00 0.00 0.00 3.34
702 703 0.258194 TCCCTCCTCTCCCTTCGTAC 59.742 60.000 0.00 0.00 0.00 3.67
703 704 1.232909 ATCCCTCCTCTCCCTTCGTA 58.767 55.000 0.00 0.00 0.00 3.43
704 705 1.232909 TATCCCTCCTCTCCCTTCGT 58.767 55.000 0.00 0.00 0.00 3.85
705 706 2.564947 CAATATCCCTCCTCTCCCTTCG 59.435 54.545 0.00 0.00 0.00 3.79
706 707 2.304470 GCAATATCCCTCCTCTCCCTTC 59.696 54.545 0.00 0.00 0.00 3.46
711 712 4.421131 TCTTAGGCAATATCCCTCCTCTC 58.579 47.826 0.00 0.00 33.88 3.20
743 744 1.398692 TTCCTTGAGGTTTGTGTGGC 58.601 50.000 0.00 0.00 36.34 5.01
772 773 1.004394 ACCCAACGGAGGAGGAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
867 868 1.745827 GCCACCTCCTGCGCTTAAATA 60.746 52.381 9.73 0.00 0.00 1.40
893 894 2.159156 GGCAAAGAAACTCACCGGTTTT 60.159 45.455 2.97 2.60 39.20 2.43
958 959 1.301716 CCTCCGGTGTGTGTTCTGG 60.302 63.158 0.00 0.00 0.00 3.86
966 967 2.058595 CCCCTCTACCTCCGGTGTG 61.059 68.421 0.00 0.00 36.19 3.82
967 968 1.807771 TTCCCCTCTACCTCCGGTGT 61.808 60.000 0.00 2.58 36.19 4.16
1188 1189 8.251026 CACAGGTTCAGAGATGTGTAGTAATAA 58.749 37.037 0.00 0.00 38.54 1.40
1333 1342 1.174078 TGCCAGTCTCGTCGGTTACA 61.174 55.000 0.00 0.00 0.00 2.41
1424 1433 0.874390 TGGATCTCGTTGCAGTTTGC 59.126 50.000 0.00 0.00 45.29 3.68
1441 1450 2.801631 GCGGTCCCTGAGATCCTGG 61.802 68.421 0.00 0.00 0.00 4.45
1519 1528 0.251653 TGTCCTTGAGGTAGCCGAGT 60.252 55.000 0.00 0.00 36.34 4.18
1652 1666 6.321945 TGCATGCCAGATAACAGATTTATTGT 59.678 34.615 16.68 0.00 0.00 2.71
1724 1738 6.051717 CACAAGGCTGTAAGTAGCATTAGAT 58.948 40.000 0.00 0.00 44.84 1.98
1800 1897 5.139727 AGATGGATGGTGACTTTTGTTGAA 58.860 37.500 0.00 0.00 0.00 2.69
1821 1918 4.473196 TGGCATTGTTCCTATCAGGTTAGA 59.527 41.667 0.00 0.00 36.53 2.10
1833 1930 6.652062 AGAAAGAAATGAAATGGCATTGTTCC 59.348 34.615 14.47 4.54 38.42 3.62
1918 2015 6.094048 GTGATGTAATAGAAACACAGTGCCAT 59.906 38.462 0.00 0.00 0.00 4.40
1980 2077 1.687368 GCTTCCCATCCTCTTTGCCAT 60.687 52.381 0.00 0.00 0.00 4.40
2538 2635 7.174946 CCATTTATTTACTCACTTCAGTGGTGT 59.825 37.037 7.11 8.86 45.65 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.