Multiple sequence alignment - TraesCS2A01G288300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G288300 chr2A 100.000 4276 0 0 1 4276 495955587 495959862 0.000000e+00 7897.0
1 TraesCS2A01G288300 chr2A 93.333 135 5 3 2237 2369 645315985 645315853 3.370000e-46 196.0
2 TraesCS2A01G288300 chr2B 97.062 1940 44 2 2350 4276 435156351 435158290 0.000000e+00 3254.0
3 TraesCS2A01G288300 chr2B 96.703 1456 30 6 789 2238 435154910 435156353 0.000000e+00 2407.0
4 TraesCS2A01G288300 chr2B 94.617 613 25 6 183 792 435154042 435154649 0.000000e+00 942.0
5 TraesCS2A01G288300 chr2B 95.455 154 4 1 1 154 360974710 360974560 4.270000e-60 243.0
6 TraesCS2A01G288300 chr2B 96.694 121 3 1 2237 2356 587232331 587232211 2.610000e-47 200.0
7 TraesCS2A01G288300 chr2B 80.132 151 23 3 4 154 16876036 16876179 5.850000e-19 106.0
8 TraesCS2A01G288300 chr2D 96.250 1840 35 13 406 2238 366496387 366498199 0.000000e+00 2985.0
9 TraesCS2A01G288300 chr2D 97.899 1190 25 0 2350 3539 366498197 366499386 0.000000e+00 2060.0
10 TraesCS2A01G288300 chr2D 97.063 749 13 2 3536 4275 366499466 366500214 0.000000e+00 1253.0
11 TraesCS2A01G288300 chr2D 95.968 124 2 1 1 124 42051225 42051345 9.380000e-47 198.0
12 TraesCS2A01G288300 chr5B 81.194 888 146 13 2395 3275 481142398 481143271 0.000000e+00 695.0
13 TraesCS2A01G288300 chr5B 94.805 154 5 1 1 154 600077574 600077424 1.990000e-58 237.0
14 TraesCS2A01G288300 chr5B 94.194 155 6 1 1 155 429514902 429515053 2.570000e-57 233.0
15 TraesCS2A01G288300 chr5D 80.997 863 143 14 2421 3275 402203071 402203920 0.000000e+00 665.0
16 TraesCS2A01G288300 chr5D 93.182 132 8 1 2224 2354 170232144 170232275 4.360000e-45 193.0
17 TraesCS2A01G288300 chr5A 80.747 857 152 9 2421 3275 507967115 507967960 0.000000e+00 656.0
18 TraesCS2A01G288300 chr5A 92.857 140 7 3 2222 2359 382565462 382565600 2.610000e-47 200.0
19 TraesCS2A01G288300 chr3A 78.269 520 111 2 2758 3276 683252242 683251724 2.460000e-87 333.0
20 TraesCS2A01G288300 chr3B 95.425 153 4 1 1 153 754781238 754781089 1.540000e-59 241.0
21 TraesCS2A01G288300 chr6B 94.839 155 5 1 1 155 611706309 611706460 5.530000e-59 239.0
22 TraesCS2A01G288300 chr6B 100.000 28 0 0 2175 2202 10072207 10072180 8.000000e-03 52.8
23 TraesCS2A01G288300 chr6B 100.000 28 0 0 2175 2202 420763960 420763933 8.000000e-03 52.8
24 TraesCS2A01G288300 chrUn 94.805 154 5 1 1 154 74807614 74807764 1.990000e-58 237.0
25 TraesCS2A01G288300 chr7A 94.805 154 5 1 1 154 33012262 33012112 1.990000e-58 237.0
26 TraesCS2A01G288300 chr7A 91.892 148 11 1 2216 2362 43524369 43524222 5.600000e-49 206.0
27 TraesCS2A01G288300 chr6D 98.291 117 1 1 2237 2352 348647454 348647338 2.020000e-48 204.0
28 TraesCS2A01G288300 chr6D 94.444 126 5 2 2236 2359 9063573 9063698 4.360000e-45 193.0
29 TraesCS2A01G288300 chr3D 97.479 119 2 1 2236 2353 337959626 337959508 7.250000e-48 202.0
30 TraesCS2A01G288300 chr1A 94.355 124 5 2 2234 2355 23098988 23099111 5.640000e-44 189.0
31 TraesCS2A01G288300 chr4A 100.000 28 0 0 2175 2202 207970200 207970227 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G288300 chr2A 495955587 495959862 4275 False 7897.000000 7897 100.000000 1 4276 1 chr2A.!!$F1 4275
1 TraesCS2A01G288300 chr2B 435154042 435158290 4248 False 2201.000000 3254 96.127333 183 4276 3 chr2B.!!$F2 4093
2 TraesCS2A01G288300 chr2D 366496387 366500214 3827 False 2099.333333 2985 97.070667 406 4275 3 chr2D.!!$F2 3869
3 TraesCS2A01G288300 chr5B 481142398 481143271 873 False 695.000000 695 81.194000 2395 3275 1 chr5B.!!$F2 880
4 TraesCS2A01G288300 chr5D 402203071 402203920 849 False 665.000000 665 80.997000 2421 3275 1 chr5D.!!$F2 854
5 TraesCS2A01G288300 chr5A 507967115 507967960 845 False 656.000000 656 80.747000 2421 3275 1 chr5A.!!$F2 854
6 TraesCS2A01G288300 chr3A 683251724 683252242 518 True 333.000000 333 78.269000 2758 3276 1 chr3A.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.037734 TGAGAGACACGTGGAGGCTA 59.962 55.0 21.57 0.0 0.00 3.93 F
293 294 0.251916 CAATTCACTAGACGGGGCCA 59.748 55.0 4.39 0.0 0.00 5.36 F
595 596 0.829182 CAGTGCTTTTGGGCCCTCTT 60.829 55.0 25.70 0.0 0.00 2.85 F
1408 1678 0.892755 TCCGTTCAGTTGATACGCCT 59.107 50.0 9.68 0.0 34.16 5.52 F
2255 2530 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2090 2365 2.746279 AACCCTTGGTGAACATGTGA 57.254 45.0 0.00 0.00 35.34 3.58 R
2236 2511 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.00 46.06 2.59 R
2239 2514 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 R
2334 2609 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.0 0.00 0.00 0.00 3.46 R
3848 4239 0.790207 TCGCAAACTGCAACGAGATC 59.210 50.0 0.00 0.00 45.36 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.654793 GACAGGTTGTTGTCTATCAGATTC 57.345 41.667 0.00 0.00 43.23 2.52
33 34 6.365970 ACAGGTTGTTGTCTATCAGATTCT 57.634 37.500 0.00 0.00 0.00 2.40
34 35 6.169094 ACAGGTTGTTGTCTATCAGATTCTG 58.831 40.000 7.38 7.38 0.00 3.02
35 36 5.064452 CAGGTTGTTGTCTATCAGATTCTGC 59.936 44.000 8.89 0.00 0.00 4.26
36 37 4.937620 GGTTGTTGTCTATCAGATTCTGCA 59.062 41.667 8.89 0.00 0.00 4.41
37 38 5.064452 GGTTGTTGTCTATCAGATTCTGCAG 59.936 44.000 7.63 7.63 0.00 4.41
38 39 4.186926 TGTTGTCTATCAGATTCTGCAGC 58.813 43.478 9.47 3.90 0.00 5.25
39 40 4.186926 GTTGTCTATCAGATTCTGCAGCA 58.813 43.478 9.47 0.00 0.00 4.41
40 41 3.790091 TGTCTATCAGATTCTGCAGCAC 58.210 45.455 9.47 2.59 0.00 4.40
41 42 3.129871 GTCTATCAGATTCTGCAGCACC 58.870 50.000 9.47 0.00 0.00 5.01
42 43 2.103771 TCTATCAGATTCTGCAGCACCC 59.896 50.000 9.47 0.00 0.00 4.61
43 44 0.463295 ATCAGATTCTGCAGCACCCG 60.463 55.000 9.47 0.00 0.00 5.28
44 45 1.376424 CAGATTCTGCAGCACCCGT 60.376 57.895 9.47 0.00 0.00 5.28
45 46 0.957395 CAGATTCTGCAGCACCCGTT 60.957 55.000 9.47 0.00 0.00 4.44
46 47 0.613260 AGATTCTGCAGCACCCGTTA 59.387 50.000 9.47 0.00 0.00 3.18
47 48 1.009829 GATTCTGCAGCACCCGTTAG 58.990 55.000 9.47 0.00 0.00 2.34
48 49 0.324943 ATTCTGCAGCACCCGTTAGT 59.675 50.000 9.47 0.00 0.00 2.24
49 50 0.107831 TTCTGCAGCACCCGTTAGTT 59.892 50.000 9.47 0.00 0.00 2.24
50 51 0.970640 TCTGCAGCACCCGTTAGTTA 59.029 50.000 9.47 0.00 0.00 2.24
51 52 1.345089 TCTGCAGCACCCGTTAGTTAA 59.655 47.619 9.47 0.00 0.00 2.01
52 53 1.463444 CTGCAGCACCCGTTAGTTAAC 59.537 52.381 0.00 0.00 0.00 2.01
53 54 0.800631 GCAGCACCCGTTAGTTAACC 59.199 55.000 0.88 0.00 32.69 2.85
54 55 1.445871 CAGCACCCGTTAGTTAACCC 58.554 55.000 0.88 0.00 32.69 4.11
55 56 1.058284 AGCACCCGTTAGTTAACCCA 58.942 50.000 0.88 0.00 32.69 4.51
56 57 1.002773 AGCACCCGTTAGTTAACCCAG 59.997 52.381 0.88 0.00 32.69 4.45
57 58 1.002315 GCACCCGTTAGTTAACCCAGA 59.998 52.381 0.88 0.00 32.69 3.86
58 59 2.355412 GCACCCGTTAGTTAACCCAGAT 60.355 50.000 0.88 0.00 32.69 2.90
59 60 3.528532 CACCCGTTAGTTAACCCAGATC 58.471 50.000 0.88 0.00 32.69 2.75
60 61 3.197116 CACCCGTTAGTTAACCCAGATCT 59.803 47.826 0.88 0.00 32.69 2.75
61 62 4.403432 CACCCGTTAGTTAACCCAGATCTA 59.597 45.833 0.88 0.00 32.69 1.98
62 63 5.070047 CACCCGTTAGTTAACCCAGATCTAT 59.930 44.000 0.88 0.00 32.69 1.98
63 64 6.266103 CACCCGTTAGTTAACCCAGATCTATA 59.734 42.308 0.88 0.00 32.69 1.31
64 65 7.015064 ACCCGTTAGTTAACCCAGATCTATAT 58.985 38.462 0.88 0.00 32.69 0.86
65 66 8.172741 ACCCGTTAGTTAACCCAGATCTATATA 58.827 37.037 0.88 0.00 32.69 0.86
66 67 9.028284 CCCGTTAGTTAACCCAGATCTATATAA 57.972 37.037 0.88 0.00 32.69 0.98
67 68 9.852091 CCGTTAGTTAACCCAGATCTATATAAC 57.148 37.037 0.88 3.63 32.69 1.89
68 69 9.852091 CGTTAGTTAACCCAGATCTATATAACC 57.148 37.037 0.88 0.00 32.69 2.85
69 70 9.852091 GTTAGTTAACCCAGATCTATATAACCG 57.148 37.037 0.88 0.00 0.00 4.44
70 71 7.477945 AGTTAACCCAGATCTATATAACCGG 57.522 40.000 0.00 0.00 0.00 5.28
71 72 4.820894 AACCCAGATCTATATAACCGGC 57.179 45.455 0.00 0.00 0.00 6.13
72 73 4.062490 ACCCAGATCTATATAACCGGCT 57.938 45.455 0.00 0.00 0.00 5.52
73 74 3.769844 ACCCAGATCTATATAACCGGCTG 59.230 47.826 0.00 0.00 0.00 4.85
74 75 4.023980 CCCAGATCTATATAACCGGCTGA 58.976 47.826 0.00 0.00 0.00 4.26
75 76 4.651503 CCCAGATCTATATAACCGGCTGAT 59.348 45.833 0.00 0.00 0.00 2.90
76 77 5.129485 CCCAGATCTATATAACCGGCTGATT 59.871 44.000 0.00 0.00 0.00 2.57
77 78 6.323996 CCCAGATCTATATAACCGGCTGATTA 59.676 42.308 0.00 0.00 0.00 1.75
78 79 7.203910 CCAGATCTATATAACCGGCTGATTAC 58.796 42.308 0.00 0.00 0.00 1.89
79 80 7.068839 CCAGATCTATATAACCGGCTGATTACT 59.931 40.741 0.00 0.00 0.00 2.24
80 81 9.121658 CAGATCTATATAACCGGCTGATTACTA 57.878 37.037 0.00 0.00 0.00 1.82
81 82 9.696572 AGATCTATATAACCGGCTGATTACTAA 57.303 33.333 0.00 0.00 0.00 2.24
88 89 5.368256 ACCGGCTGATTACTAATACTACG 57.632 43.478 0.00 0.00 0.00 3.51
89 90 4.217118 ACCGGCTGATTACTAATACTACGG 59.783 45.833 0.00 0.00 41.87 4.02
90 91 4.217118 CCGGCTGATTACTAATACTACGGT 59.783 45.833 0.00 0.00 32.46 4.83
91 92 5.152097 CGGCTGATTACTAATACTACGGTG 58.848 45.833 0.00 0.00 0.00 4.94
92 93 5.049198 CGGCTGATTACTAATACTACGGTGA 60.049 44.000 0.00 0.00 0.00 4.02
93 94 6.380190 GGCTGATTACTAATACTACGGTGAG 58.620 44.000 0.00 0.00 0.00 3.51
94 95 6.206243 GGCTGATTACTAATACTACGGTGAGA 59.794 42.308 0.00 0.00 0.00 3.27
95 96 7.299586 GCTGATTACTAATACTACGGTGAGAG 58.700 42.308 0.00 0.00 0.00 3.20
96 97 7.172875 GCTGATTACTAATACTACGGTGAGAGA 59.827 40.741 0.00 0.00 0.00 3.10
97 98 8.375608 TGATTACTAATACTACGGTGAGAGAC 57.624 38.462 0.00 0.00 0.00 3.36
98 99 7.989170 TGATTACTAATACTACGGTGAGAGACA 59.011 37.037 0.00 0.00 0.00 3.41
107 108 1.080434 GTGAGAGACACGTGGAGGC 60.080 63.158 21.57 6.19 39.78 4.70
108 109 1.228583 TGAGAGACACGTGGAGGCT 60.229 57.895 21.57 11.16 0.00 4.58
109 110 0.037734 TGAGAGACACGTGGAGGCTA 59.962 55.000 21.57 0.00 0.00 3.93
110 111 1.174783 GAGAGACACGTGGAGGCTAA 58.825 55.000 21.57 0.00 0.00 3.09
111 112 1.544691 GAGAGACACGTGGAGGCTAAA 59.455 52.381 21.57 0.00 0.00 1.85
112 113 1.272769 AGAGACACGTGGAGGCTAAAC 59.727 52.381 21.57 0.53 0.00 2.01
113 114 1.000506 GAGACACGTGGAGGCTAAACA 59.999 52.381 21.57 0.00 0.00 2.83
114 115 1.414919 AGACACGTGGAGGCTAAACAA 59.585 47.619 21.57 0.00 0.00 2.83
115 116 1.529865 GACACGTGGAGGCTAAACAAC 59.470 52.381 21.57 0.00 0.00 3.32
116 117 1.140252 ACACGTGGAGGCTAAACAACT 59.860 47.619 21.57 0.00 0.00 3.16
117 118 2.366266 ACACGTGGAGGCTAAACAACTA 59.634 45.455 21.57 0.00 0.00 2.24
118 119 2.993899 CACGTGGAGGCTAAACAACTAG 59.006 50.000 7.95 0.00 0.00 2.57
119 120 2.028385 ACGTGGAGGCTAAACAACTAGG 60.028 50.000 0.00 0.00 0.00 3.02
120 121 2.028385 CGTGGAGGCTAAACAACTAGGT 60.028 50.000 0.00 0.00 0.00 3.08
121 122 3.335579 GTGGAGGCTAAACAACTAGGTG 58.664 50.000 6.14 6.14 0.00 4.00
122 123 2.304761 TGGAGGCTAAACAACTAGGTGG 59.695 50.000 13.49 0.00 0.00 4.61
123 124 2.305052 GGAGGCTAAACAACTAGGTGGT 59.695 50.000 13.49 1.21 0.00 4.16
124 125 3.516700 GGAGGCTAAACAACTAGGTGGTA 59.483 47.826 13.49 3.03 0.00 3.25
125 126 4.019950 GGAGGCTAAACAACTAGGTGGTAA 60.020 45.833 13.49 0.00 0.00 2.85
126 127 4.903054 AGGCTAAACAACTAGGTGGTAAC 58.097 43.478 13.49 0.00 0.00 2.50
127 128 4.596212 AGGCTAAACAACTAGGTGGTAACT 59.404 41.667 13.49 0.00 37.61 2.24
128 129 5.781818 AGGCTAAACAACTAGGTGGTAACTA 59.218 40.000 13.49 0.00 37.61 2.24
129 130 5.871524 GGCTAAACAACTAGGTGGTAACTAC 59.128 44.000 13.49 0.00 37.61 2.73
130 131 5.871524 GCTAAACAACTAGGTGGTAACTACC 59.128 44.000 13.49 0.00 46.62 3.18
142 143 4.796038 GGTAACTACCACTGCTTGTAGA 57.204 45.455 0.80 0.00 45.73 2.59
143 144 5.340439 GGTAACTACCACTGCTTGTAGAT 57.660 43.478 0.80 0.00 45.73 1.98
144 145 6.461110 GGTAACTACCACTGCTTGTAGATA 57.539 41.667 0.80 0.00 45.73 1.98
145 146 6.870769 GGTAACTACCACTGCTTGTAGATAA 58.129 40.000 0.80 0.00 45.73 1.75
146 147 7.325694 GGTAACTACCACTGCTTGTAGATAAA 58.674 38.462 0.80 0.00 45.73 1.40
147 148 7.820872 GGTAACTACCACTGCTTGTAGATAAAA 59.179 37.037 0.80 0.00 45.73 1.52
148 149 9.379791 GTAACTACCACTGCTTGTAGATAAAAT 57.620 33.333 3.87 0.00 38.24 1.82
149 150 8.863872 AACTACCACTGCTTGTAGATAAAATT 57.136 30.769 3.87 0.00 38.24 1.82
150 151 8.863872 ACTACCACTGCTTGTAGATAAAATTT 57.136 30.769 3.87 0.00 38.24 1.82
151 152 8.730680 ACTACCACTGCTTGTAGATAAAATTTG 58.269 33.333 3.87 0.00 38.24 2.32
152 153 7.524717 ACCACTGCTTGTAGATAAAATTTGT 57.475 32.000 0.00 0.00 0.00 2.83
153 154 7.593825 ACCACTGCTTGTAGATAAAATTTGTC 58.406 34.615 0.00 0.00 0.00 3.18
154 155 7.230510 ACCACTGCTTGTAGATAAAATTTGTCA 59.769 33.333 5.32 0.00 0.00 3.58
155 156 7.538678 CCACTGCTTGTAGATAAAATTTGTCAC 59.461 37.037 5.32 2.69 0.00 3.67
156 157 8.075574 CACTGCTTGTAGATAAAATTTGTCACA 58.924 33.333 5.32 4.91 0.00 3.58
157 158 8.076178 ACTGCTTGTAGATAAAATTTGTCACAC 58.924 33.333 5.32 3.48 0.00 3.82
158 159 7.935520 TGCTTGTAGATAAAATTTGTCACACA 58.064 30.769 5.32 5.74 0.00 3.72
159 160 7.860373 TGCTTGTAGATAAAATTTGTCACACAC 59.140 33.333 5.32 3.70 0.00 3.82
160 161 7.860373 GCTTGTAGATAAAATTTGTCACACACA 59.140 33.333 5.32 1.50 0.00 3.72
161 162 9.169468 CTTGTAGATAAAATTTGTCACACACAC 57.831 33.333 5.32 0.00 33.41 3.82
162 163 8.214721 TGTAGATAAAATTTGTCACACACACA 57.785 30.769 5.32 0.00 33.41 3.72
163 164 8.126074 TGTAGATAAAATTTGTCACACACACAC 58.874 33.333 5.32 0.00 33.41 3.82
164 165 7.094508 AGATAAAATTTGTCACACACACACA 57.905 32.000 5.32 0.00 33.41 3.72
165 166 6.972328 AGATAAAATTTGTCACACACACACAC 59.028 34.615 5.32 0.00 33.41 3.82
166 167 4.511617 AAATTTGTCACACACACACACA 57.488 36.364 0.00 0.00 33.41 3.72
167 168 2.979401 TTTGTCACACACACACACAC 57.021 45.000 0.00 0.00 33.41 3.82
168 169 1.884235 TTGTCACACACACACACACA 58.116 45.000 0.00 0.00 33.41 3.72
169 170 1.152510 TGTCACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
170 171 1.152510 GTCACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
171 172 1.136085 GTCACACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
172 173 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
173 174 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
174 175 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
175 176 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
176 177 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
177 178 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
178 179 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
179 180 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
180 181 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
181 182 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
186 187 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
189 190 6.931840 ACACACACACACACACACATATATTA 59.068 34.615 0.00 0.00 0.00 0.98
193 194 7.119116 CACACACACACACACATATATTAACCT 59.881 37.037 0.00 0.00 0.00 3.50
228 229 7.700322 ACGAGAAATATATATTGGCATAGCG 57.300 36.000 8.74 8.49 0.00 4.26
272 273 1.097547 GTGATGCCCCACTTGATCCG 61.098 60.000 0.00 0.00 34.38 4.18
278 279 1.955208 GCCCCACTTGATCCGACAATT 60.955 52.381 0.00 0.00 0.00 2.32
290 291 1.470979 CCGACAATTCACTAGACGGGG 60.471 57.143 0.00 0.00 37.04 5.73
292 293 0.252197 ACAATTCACTAGACGGGGCC 59.748 55.000 0.00 0.00 0.00 5.80
293 294 0.251916 CAATTCACTAGACGGGGCCA 59.748 55.000 4.39 0.00 0.00 5.36
312 313 2.362736 CAGCTGGATGCACTACATGTT 58.637 47.619 2.30 0.00 45.94 2.71
320 321 3.541996 TGCACTACATGTTGGATCGAT 57.458 42.857 2.30 0.00 0.00 3.59
378 379 1.079405 GAACGTCGCCCTGGATTCA 60.079 57.895 0.00 0.00 0.00 2.57
415 416 4.574674 TCAGCTTGTCATTTGTATCCCT 57.425 40.909 0.00 0.00 0.00 4.20
456 457 6.309980 TGGCACATAATCTTTATTTGTTTGCG 59.690 34.615 0.00 0.00 0.00 4.85
595 596 0.829182 CAGTGCTTTTGGGCCCTCTT 60.829 55.000 25.70 0.00 0.00 2.85
636 637 9.507329 GATAAGTAAGCCATCATGATTTCCTAA 57.493 33.333 5.16 0.00 0.00 2.69
727 728 7.231519 TCGGAGATCAGATAACACAGTGATTAT 59.768 37.037 7.81 7.71 29.66 1.28
811 1079 5.163713 GCTTACTGCAGACTTTTTATCTGGG 60.164 44.000 23.35 0.00 43.26 4.45
816 1084 5.248640 TGCAGACTTTTTATCTGGGAAGAG 58.751 41.667 4.31 0.00 43.26 2.85
1017 1285 1.595382 GATGGGATCGAAGGCGGTG 60.595 63.158 0.00 0.00 38.28 4.94
1282 1550 7.435068 AAACTGCGAGTTAGTATGATTGTTT 57.565 32.000 2.60 0.00 37.47 2.83
1316 1584 5.662657 TGATCTGTGGAGATGATTGGTTCTA 59.337 40.000 0.00 0.00 39.19 2.10
1317 1585 6.328410 TGATCTGTGGAGATGATTGGTTCTAT 59.672 38.462 0.00 0.00 39.19 1.98
1318 1586 7.510343 TGATCTGTGGAGATGATTGGTTCTATA 59.490 37.037 0.00 0.00 39.19 1.31
1408 1678 0.892755 TCCGTTCAGTTGATACGCCT 59.107 50.000 9.68 0.00 34.16 5.52
1461 1731 4.566545 TGCCAAGATTATGTTTATGCGG 57.433 40.909 0.00 0.00 0.00 5.69
1481 1756 3.749088 CGGCTGTACACTATTTGGTTGAA 59.251 43.478 0.00 0.00 0.00 2.69
1534 1809 7.016268 AGGTTCAGTTTACCATTCTCAAGTAGA 59.984 37.037 0.00 0.00 38.16 2.59
1535 1810 7.332182 GGTTCAGTTTACCATTCTCAAGTAGAG 59.668 40.741 0.00 0.00 39.38 2.43
1536 1811 7.540474 TCAGTTTACCATTCTCAAGTAGAGT 57.460 36.000 0.00 0.00 44.98 3.24
1537 1812 8.645814 TCAGTTTACCATTCTCAAGTAGAGTA 57.354 34.615 0.00 0.00 44.98 2.59
1538 1813 8.740906 TCAGTTTACCATTCTCAAGTAGAGTAG 58.259 37.037 0.00 0.00 44.98 2.57
1595 1870 7.745620 TGATAGAGATAGTCGTATGCTTTGA 57.254 36.000 0.00 0.00 0.00 2.69
1874 2149 1.882623 CTCAAACCCAAAGAGGCTGAC 59.117 52.381 0.00 0.00 35.39 3.51
2102 2377 1.673033 CCTCGGACTCACATGTTCACC 60.673 57.143 0.00 0.00 0.00 4.02
2188 2463 5.533154 CAGTAGGTCATACTCCCTCTGTAAG 59.467 48.000 0.00 0.00 43.13 2.34
2245 2520 4.628963 TGTTTACAAAGGTACTCCCTCC 57.371 45.455 0.00 0.00 45.47 4.30
2246 2521 3.007182 TGTTTACAAAGGTACTCCCTCCG 59.993 47.826 0.00 0.00 45.47 4.63
2247 2522 2.610438 TACAAAGGTACTCCCTCCGT 57.390 50.000 0.00 0.00 45.47 4.69
2248 2523 1.264295 ACAAAGGTACTCCCTCCGTC 58.736 55.000 0.00 0.00 45.47 4.79
2249 2524 0.535797 CAAAGGTACTCCCTCCGTCC 59.464 60.000 0.00 0.00 45.47 4.79
2250 2525 0.969409 AAAGGTACTCCCTCCGTCCG 60.969 60.000 0.00 0.00 45.47 4.79
2251 2526 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
2252 2527 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
2253 2528 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2254 2529 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2255 2530 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2256 2531 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2257 2532 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2258 2533 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2259 2534 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2260 2535 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2261 2536 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2262 2537 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2263 2538 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2264 2539 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
2265 2540 2.159393 CCGTCCGGAAATACTTGTCGTA 60.159 50.000 5.23 0.00 37.50 3.43
2266 2541 3.500982 CGTCCGGAAATACTTGTCGTAA 58.499 45.455 5.23 0.00 0.00 3.18
2267 2542 3.919804 CGTCCGGAAATACTTGTCGTAAA 59.080 43.478 5.23 0.00 0.00 2.01
2268 2543 4.385447 CGTCCGGAAATACTTGTCGTAAAA 59.615 41.667 5.23 0.00 0.00 1.52
2269 2544 5.062558 CGTCCGGAAATACTTGTCGTAAAAT 59.937 40.000 5.23 0.00 0.00 1.82
2270 2545 6.245724 GTCCGGAAATACTTGTCGTAAAATG 58.754 40.000 5.23 0.00 0.00 2.32
2271 2546 5.352016 TCCGGAAATACTTGTCGTAAAATGG 59.648 40.000 0.00 0.00 0.00 3.16
2272 2547 5.352016 CCGGAAATACTTGTCGTAAAATGGA 59.648 40.000 0.00 0.00 0.00 3.41
2273 2548 6.037830 CCGGAAATACTTGTCGTAAAATGGAT 59.962 38.462 0.00 0.00 0.00 3.41
2274 2549 7.225145 CCGGAAATACTTGTCGTAAAATGGATA 59.775 37.037 0.00 0.00 0.00 2.59
2275 2550 8.060090 CGGAAATACTTGTCGTAAAATGGATAC 58.940 37.037 0.00 0.00 0.00 2.24
2276 2551 8.060090 GGAAATACTTGTCGTAAAATGGATACG 58.940 37.037 0.00 0.00 45.60 3.06
2285 2560 6.539649 CGTAAAATGGATACGAATGGATGT 57.460 37.500 0.06 0.00 46.81 3.06
2286 2561 7.646446 CGTAAAATGGATACGAATGGATGTA 57.354 36.000 0.06 0.00 46.81 2.29
2287 2562 8.251750 CGTAAAATGGATACGAATGGATGTAT 57.748 34.615 0.06 0.00 46.81 2.29
2288 2563 8.380644 CGTAAAATGGATACGAATGGATGTATC 58.619 37.037 0.06 4.25 46.81 2.24
2289 2564 9.436957 GTAAAATGGATACGAATGGATGTATCT 57.563 33.333 10.99 0.00 44.04 1.98
2291 2566 9.658799 AAAATGGATACGAATGGATGTATCTAG 57.341 33.333 10.99 0.00 44.04 2.43
2292 2567 8.595362 AATGGATACGAATGGATGTATCTAGA 57.405 34.615 10.99 0.00 44.04 2.43
2293 2568 8.595362 ATGGATACGAATGGATGTATCTAGAA 57.405 34.615 0.00 0.00 44.04 2.10
2294 2569 7.827701 TGGATACGAATGGATGTATCTAGAAC 58.172 38.462 0.00 0.00 44.04 3.01
2295 2570 7.670140 TGGATACGAATGGATGTATCTAGAACT 59.330 37.037 0.00 0.00 44.04 3.01
2296 2571 9.175312 GGATACGAATGGATGTATCTAGAACTA 57.825 37.037 0.00 0.00 44.04 2.24
2324 2599 6.522625 ACATCTAGATACATCCATTCCTCG 57.477 41.667 4.54 0.00 0.00 4.63
2325 2600 5.420421 ACATCTAGATACATCCATTCCTCGG 59.580 44.000 4.54 0.00 0.00 4.63
2326 2601 5.256806 TCTAGATACATCCATTCCTCGGA 57.743 43.478 0.00 0.00 36.84 4.55
2327 2602 5.010933 TCTAGATACATCCATTCCTCGGAC 58.989 45.833 0.00 0.00 34.69 4.79
2328 2603 3.576861 AGATACATCCATTCCTCGGACA 58.423 45.455 0.00 0.00 34.69 4.02
2329 2604 3.967326 AGATACATCCATTCCTCGGACAA 59.033 43.478 0.00 0.00 34.69 3.18
2330 2605 2.698855 ACATCCATTCCTCGGACAAG 57.301 50.000 0.00 0.00 34.69 3.16
2331 2606 1.909302 ACATCCATTCCTCGGACAAGT 59.091 47.619 0.00 0.00 34.69 3.16
2332 2607 3.104512 ACATCCATTCCTCGGACAAGTA 58.895 45.455 0.00 0.00 34.69 2.24
2333 2608 3.711704 ACATCCATTCCTCGGACAAGTAT 59.288 43.478 0.00 0.00 34.69 2.12
2334 2609 4.164221 ACATCCATTCCTCGGACAAGTATT 59.836 41.667 0.00 0.00 34.69 1.89
2335 2610 4.837093 TCCATTCCTCGGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
2336 2611 5.174037 TCCATTCCTCGGACAAGTATTTT 57.826 39.130 0.00 0.00 0.00 1.82
2337 2612 5.183228 TCCATTCCTCGGACAAGTATTTTC 58.817 41.667 0.00 0.00 0.00 2.29
2338 2613 4.034048 CCATTCCTCGGACAAGTATTTTCG 59.966 45.833 0.00 0.00 0.00 3.46
2339 2614 3.241067 TCCTCGGACAAGTATTTTCGG 57.759 47.619 0.00 0.00 0.00 4.30
2340 2615 2.827322 TCCTCGGACAAGTATTTTCGGA 59.173 45.455 0.00 0.00 0.00 4.55
2341 2616 2.928116 CCTCGGACAAGTATTTTCGGAC 59.072 50.000 0.00 0.00 0.00 4.79
2342 2617 2.597305 CTCGGACAAGTATTTTCGGACG 59.403 50.000 0.00 0.00 0.00 4.79
2343 2618 1.657094 CGGACAAGTATTTTCGGACGG 59.343 52.381 0.00 0.00 0.00 4.79
2344 2619 2.671914 CGGACAAGTATTTTCGGACGGA 60.672 50.000 0.00 0.00 0.00 4.69
2345 2620 2.928116 GGACAAGTATTTTCGGACGGAG 59.072 50.000 0.00 0.00 0.00 4.63
2346 2621 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2347 2622 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2348 2623 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2492 2767 1.685302 GTGCTACATTGGTGCAAACG 58.315 50.000 7.28 0.00 38.50 3.60
2675 2950 3.199289 AGGGTGGTTACTATGCAAGGTAC 59.801 47.826 0.00 0.00 0.00 3.34
2694 2997 6.935167 AGGTACCAATGCTTCTAAAATTTGG 58.065 36.000 15.94 0.00 0.00 3.28
2751 3054 7.174946 CCATTTATTTACTCACTTCAGTGGTGT 59.825 37.037 7.11 8.86 45.65 4.16
3309 3612 1.687368 GCTTCCCATCCTCTTTGCCAT 60.687 52.381 0.00 0.00 0.00 4.40
3371 3674 6.094048 GTGATGTAATAGAAACACAGTGCCAT 59.906 38.462 0.00 0.00 0.00 4.40
3456 3759 6.652062 AGAAAGAAATGAAATGGCATTGTTCC 59.348 34.615 14.47 4.54 38.42 3.62
3468 3771 4.473196 TGGCATTGTTCCTATCAGGTTAGA 59.527 41.667 0.00 0.00 36.53 2.10
3489 3792 5.139727 AGATGGATGGTGACTTTTGTTGAA 58.860 37.500 0.00 0.00 0.00 2.69
3565 3951 6.051717 CACAAGGCTGTAAGTAGCATTAGAT 58.948 40.000 0.00 0.00 44.84 1.98
3637 4023 6.321945 TGCATGCCAGATAACAGATTTATTGT 59.678 34.615 16.68 0.00 0.00 2.71
3770 4161 0.251653 TGTCCTTGAGGTAGCCGAGT 60.252 55.000 0.00 0.00 36.34 4.18
3848 4239 2.801631 GCGGTCCCTGAGATCCTGG 61.802 68.421 0.00 0.00 0.00 4.45
3865 4256 0.874390 TGGATCTCGTTGCAGTTTGC 59.126 50.000 0.00 0.00 45.29 3.68
3956 4347 1.174078 TGCCAGTCTCGTCGGTTACA 61.174 55.000 0.00 0.00 0.00 2.41
4101 4500 8.251026 CACAGGTTCAGAGATGTGTAGTAATAA 58.749 37.037 0.00 0.00 38.54 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.793353 CAGAATCTGATAGACAACAACCTGTCT 60.793 40.741 3.77 10.79 44.79 3.41
9 10 6.312426 CAGAATCTGATAGACAACAACCTGTC 59.688 42.308 3.77 0.00 38.87 3.51
10 11 6.169094 CAGAATCTGATAGACAACAACCTGT 58.831 40.000 3.77 0.00 32.44 4.00
11 12 5.064452 GCAGAATCTGATAGACAACAACCTG 59.936 44.000 15.38 0.00 32.44 4.00
12 13 5.181748 GCAGAATCTGATAGACAACAACCT 58.818 41.667 15.38 0.00 32.44 3.50
13 14 4.937620 TGCAGAATCTGATAGACAACAACC 59.062 41.667 15.38 0.00 32.44 3.77
14 15 5.447010 GCTGCAGAATCTGATAGACAACAAC 60.447 44.000 20.43 0.00 32.44 3.32
15 16 4.633126 GCTGCAGAATCTGATAGACAACAA 59.367 41.667 20.43 0.00 32.44 2.83
16 17 4.186926 GCTGCAGAATCTGATAGACAACA 58.813 43.478 20.43 0.00 32.44 3.33
17 18 4.033817 GTGCTGCAGAATCTGATAGACAAC 59.966 45.833 20.43 7.13 32.44 3.32
18 19 4.186926 GTGCTGCAGAATCTGATAGACAA 58.813 43.478 20.43 0.00 32.44 3.18
19 20 3.431346 GGTGCTGCAGAATCTGATAGACA 60.431 47.826 20.43 10.20 32.44 3.41
20 21 3.129871 GGTGCTGCAGAATCTGATAGAC 58.870 50.000 20.43 10.40 32.44 2.59
21 22 2.103771 GGGTGCTGCAGAATCTGATAGA 59.896 50.000 20.43 0.00 32.44 1.98
22 23 2.492012 GGGTGCTGCAGAATCTGATAG 58.508 52.381 20.43 11.93 32.44 2.08
23 24 1.202568 CGGGTGCTGCAGAATCTGATA 60.203 52.381 20.43 0.87 32.44 2.15
24 25 0.463295 CGGGTGCTGCAGAATCTGAT 60.463 55.000 20.43 0.00 32.44 2.90
25 26 1.078918 CGGGTGCTGCAGAATCTGA 60.079 57.895 20.43 0.00 32.44 3.27
26 27 0.957395 AACGGGTGCTGCAGAATCTG 60.957 55.000 20.43 16.34 34.12 2.90
27 28 0.613260 TAACGGGTGCTGCAGAATCT 59.387 50.000 20.43 0.00 0.00 2.40
28 29 1.009829 CTAACGGGTGCTGCAGAATC 58.990 55.000 20.43 7.33 0.00 2.52
29 30 0.324943 ACTAACGGGTGCTGCAGAAT 59.675 50.000 20.43 0.00 0.00 2.40
30 31 0.107831 AACTAACGGGTGCTGCAGAA 59.892 50.000 20.43 2.96 0.00 3.02
31 32 0.970640 TAACTAACGGGTGCTGCAGA 59.029 50.000 20.43 0.00 0.00 4.26
32 33 1.463444 GTTAACTAACGGGTGCTGCAG 59.537 52.381 10.11 10.11 0.00 4.41
33 34 1.515081 GTTAACTAACGGGTGCTGCA 58.485 50.000 0.00 0.00 0.00 4.41
34 35 0.800631 GGTTAACTAACGGGTGCTGC 59.199 55.000 5.42 0.00 37.07 5.25
35 36 1.270947 TGGGTTAACTAACGGGTGCTG 60.271 52.381 5.42 0.00 37.07 4.41
36 37 1.002773 CTGGGTTAACTAACGGGTGCT 59.997 52.381 5.42 0.00 37.07 4.40
37 38 1.002315 TCTGGGTTAACTAACGGGTGC 59.998 52.381 5.42 0.00 37.07 5.01
38 39 3.197116 AGATCTGGGTTAACTAACGGGTG 59.803 47.826 5.42 0.00 37.07 4.61
39 40 3.447950 AGATCTGGGTTAACTAACGGGT 58.552 45.455 5.42 0.00 37.07 5.28
40 41 5.803237 ATAGATCTGGGTTAACTAACGGG 57.197 43.478 5.18 0.00 37.07 5.28
41 42 9.852091 GTTATATAGATCTGGGTTAACTAACGG 57.148 37.037 5.18 2.17 37.07 4.44
42 43 9.852091 GGTTATATAGATCTGGGTTAACTAACG 57.148 37.037 5.18 0.00 37.07 3.18
43 44 9.852091 CGGTTATATAGATCTGGGTTAACTAAC 57.148 37.037 5.18 2.11 35.50 2.34
44 45 9.028284 CCGGTTATATAGATCTGGGTTAACTAA 57.972 37.037 5.18 0.00 0.00 2.24
45 46 7.123247 GCCGGTTATATAGATCTGGGTTAACTA 59.877 40.741 5.18 0.00 0.00 2.24
46 47 6.070938 GCCGGTTATATAGATCTGGGTTAACT 60.071 42.308 5.18 0.00 0.00 2.24
47 48 6.070938 AGCCGGTTATATAGATCTGGGTTAAC 60.071 42.308 5.18 8.04 34.00 2.01
48 49 6.021030 AGCCGGTTATATAGATCTGGGTTAA 58.979 40.000 5.18 0.00 34.00 2.01
49 50 5.421056 CAGCCGGTTATATAGATCTGGGTTA 59.579 44.000 5.18 0.00 35.28 2.85
50 51 4.223032 CAGCCGGTTATATAGATCTGGGTT 59.777 45.833 5.18 0.00 35.28 4.11
51 52 3.769844 CAGCCGGTTATATAGATCTGGGT 59.230 47.826 5.18 2.75 37.51 4.51
52 53 4.023980 TCAGCCGGTTATATAGATCTGGG 58.976 47.826 5.18 0.00 0.00 4.45
53 54 5.860941 ATCAGCCGGTTATATAGATCTGG 57.139 43.478 5.18 0.00 0.00 3.86
54 55 8.001881 AGTAATCAGCCGGTTATATAGATCTG 57.998 38.462 5.18 0.00 0.00 2.90
55 56 9.696572 TTAGTAATCAGCCGGTTATATAGATCT 57.303 33.333 1.90 0.00 0.00 2.75
62 63 8.668353 CGTAGTATTAGTAATCAGCCGGTTATA 58.332 37.037 1.90 0.00 0.00 0.98
63 64 7.362401 CCGTAGTATTAGTAATCAGCCGGTTAT 60.362 40.741 1.90 0.00 0.00 1.89
64 65 6.072508 CCGTAGTATTAGTAATCAGCCGGTTA 60.073 42.308 1.90 0.00 0.00 2.85
65 66 5.278660 CCGTAGTATTAGTAATCAGCCGGTT 60.279 44.000 1.90 0.00 0.00 4.44
66 67 4.217118 CCGTAGTATTAGTAATCAGCCGGT 59.783 45.833 1.90 0.00 0.00 5.28
67 68 4.217118 ACCGTAGTATTAGTAATCAGCCGG 59.783 45.833 16.31 16.31 36.69 6.13
68 69 5.049198 TCACCGTAGTATTAGTAATCAGCCG 60.049 44.000 0.00 0.00 0.00 5.52
69 70 6.206243 TCTCACCGTAGTATTAGTAATCAGCC 59.794 42.308 0.00 0.00 0.00 4.85
70 71 7.172875 TCTCTCACCGTAGTATTAGTAATCAGC 59.827 40.741 0.00 0.00 0.00 4.26
71 72 8.497554 GTCTCTCACCGTAGTATTAGTAATCAG 58.502 40.741 0.00 0.00 0.00 2.90
72 73 7.989170 TGTCTCTCACCGTAGTATTAGTAATCA 59.011 37.037 0.00 0.00 0.00 2.57
73 74 8.281893 GTGTCTCTCACCGTAGTATTAGTAATC 58.718 40.741 0.00 0.00 40.84 1.75
74 75 7.042187 CGTGTCTCTCACCGTAGTATTAGTAAT 60.042 40.741 0.17 0.17 43.51 1.89
75 76 6.256539 CGTGTCTCTCACCGTAGTATTAGTAA 59.743 42.308 0.00 0.00 43.51 2.24
76 77 5.750547 CGTGTCTCTCACCGTAGTATTAGTA 59.249 44.000 0.00 0.00 43.51 1.82
77 78 4.569966 CGTGTCTCTCACCGTAGTATTAGT 59.430 45.833 0.00 0.00 43.51 2.24
78 79 4.569966 ACGTGTCTCTCACCGTAGTATTAG 59.430 45.833 0.00 0.00 43.51 1.73
79 80 4.330894 CACGTGTCTCTCACCGTAGTATTA 59.669 45.833 7.58 0.00 43.51 0.98
80 81 3.126514 CACGTGTCTCTCACCGTAGTATT 59.873 47.826 7.58 0.00 43.51 1.89
81 82 2.676839 CACGTGTCTCTCACCGTAGTAT 59.323 50.000 7.58 0.00 43.51 2.12
82 83 2.071540 CACGTGTCTCTCACCGTAGTA 58.928 52.381 7.58 0.00 43.51 1.82
83 84 0.873054 CACGTGTCTCTCACCGTAGT 59.127 55.000 7.58 0.00 43.51 2.73
84 85 0.168348 CCACGTGTCTCTCACCGTAG 59.832 60.000 15.65 0.00 43.51 3.51
85 86 0.250424 TCCACGTGTCTCTCACCGTA 60.250 55.000 15.65 0.00 43.51 4.02
86 87 1.516365 CTCCACGTGTCTCTCACCGT 61.516 60.000 15.65 0.00 43.51 4.83
87 88 1.210413 CTCCACGTGTCTCTCACCG 59.790 63.158 15.65 0.00 43.51 4.94
88 89 1.587054 CCTCCACGTGTCTCTCACC 59.413 63.158 15.65 0.00 43.51 4.02
89 90 1.080434 GCCTCCACGTGTCTCTCAC 60.080 63.158 15.65 0.00 43.03 3.51
90 91 0.037734 TAGCCTCCACGTGTCTCTCA 59.962 55.000 15.65 0.00 0.00 3.27
91 92 1.174783 TTAGCCTCCACGTGTCTCTC 58.825 55.000 15.65 0.00 0.00 3.20
92 93 1.272769 GTTTAGCCTCCACGTGTCTCT 59.727 52.381 15.65 8.27 0.00 3.10
93 94 1.000506 TGTTTAGCCTCCACGTGTCTC 59.999 52.381 15.65 0.52 0.00 3.36
94 95 1.045407 TGTTTAGCCTCCACGTGTCT 58.955 50.000 15.65 8.28 0.00 3.41
95 96 1.529865 GTTGTTTAGCCTCCACGTGTC 59.470 52.381 15.65 0.52 0.00 3.67
96 97 1.140252 AGTTGTTTAGCCTCCACGTGT 59.860 47.619 15.65 0.00 0.00 4.49
97 98 1.878953 AGTTGTTTAGCCTCCACGTG 58.121 50.000 9.08 9.08 0.00 4.49
98 99 2.028385 CCTAGTTGTTTAGCCTCCACGT 60.028 50.000 0.00 0.00 0.00 4.49
99 100 2.028385 ACCTAGTTGTTTAGCCTCCACG 60.028 50.000 0.00 0.00 0.00 4.94
100 101 3.335579 CACCTAGTTGTTTAGCCTCCAC 58.664 50.000 0.00 0.00 0.00 4.02
101 102 2.304761 CCACCTAGTTGTTTAGCCTCCA 59.695 50.000 0.00 0.00 0.00 3.86
102 103 2.305052 ACCACCTAGTTGTTTAGCCTCC 59.695 50.000 0.00 0.00 0.00 4.30
103 104 3.697619 ACCACCTAGTTGTTTAGCCTC 57.302 47.619 0.00 0.00 0.00 4.70
104 105 4.596212 AGTTACCACCTAGTTGTTTAGCCT 59.404 41.667 0.00 0.00 0.00 4.58
105 106 4.903054 AGTTACCACCTAGTTGTTTAGCC 58.097 43.478 0.00 0.00 0.00 3.93
106 107 5.871524 GGTAGTTACCACCTAGTTGTTTAGC 59.128 44.000 3.45 0.00 45.73 3.09
121 122 4.796038 TCTACAAGCAGTGGTAGTTACC 57.204 45.455 0.00 1.25 46.62 2.85
122 123 8.767478 TTTTATCTACAAGCAGTGGTAGTTAC 57.233 34.615 0.00 0.00 38.46 2.50
123 124 9.953565 AATTTTATCTACAAGCAGTGGTAGTTA 57.046 29.630 0.00 0.00 38.46 2.24
124 125 8.863872 AATTTTATCTACAAGCAGTGGTAGTT 57.136 30.769 0.00 0.00 38.46 2.24
125 126 8.730680 CAAATTTTATCTACAAGCAGTGGTAGT 58.269 33.333 0.00 0.00 38.46 2.73
126 127 8.730680 ACAAATTTTATCTACAAGCAGTGGTAG 58.269 33.333 0.00 0.00 38.63 3.18
127 128 8.630054 ACAAATTTTATCTACAAGCAGTGGTA 57.370 30.769 0.00 0.00 0.00 3.25
128 129 7.230510 TGACAAATTTTATCTACAAGCAGTGGT 59.769 33.333 0.00 0.00 0.00 4.16
129 130 7.538678 GTGACAAATTTTATCTACAAGCAGTGG 59.461 37.037 0.00 0.00 0.00 4.00
130 131 8.075574 TGTGACAAATTTTATCTACAAGCAGTG 58.924 33.333 0.00 0.00 0.00 3.66
131 132 8.076178 GTGTGACAAATTTTATCTACAAGCAGT 58.924 33.333 0.00 0.00 0.00 4.40
132 133 8.075574 TGTGTGACAAATTTTATCTACAAGCAG 58.924 33.333 0.00 0.00 0.00 4.24
133 134 7.860373 GTGTGTGACAAATTTTATCTACAAGCA 59.140 33.333 0.00 0.00 0.00 3.91
134 135 7.860373 TGTGTGTGACAAATTTTATCTACAAGC 59.140 33.333 0.00 0.00 0.00 4.01
135 136 9.169468 GTGTGTGTGACAAATTTTATCTACAAG 57.831 33.333 0.00 0.00 35.91 3.16
136 137 8.678199 TGTGTGTGTGACAAATTTTATCTACAA 58.322 29.630 0.00 0.00 35.91 2.41
137 138 8.126074 GTGTGTGTGTGACAAATTTTATCTACA 58.874 33.333 0.00 0.00 35.91 2.74
138 139 8.126074 TGTGTGTGTGTGACAAATTTTATCTAC 58.874 33.333 0.00 0.00 35.91 2.59
139 140 8.126074 GTGTGTGTGTGTGACAAATTTTATCTA 58.874 33.333 0.00 0.00 35.91 1.98
140 141 6.972328 GTGTGTGTGTGTGACAAATTTTATCT 59.028 34.615 0.00 0.00 35.91 1.98
141 142 6.749578 TGTGTGTGTGTGTGACAAATTTTATC 59.250 34.615 0.00 0.00 35.91 1.75
142 143 6.529829 GTGTGTGTGTGTGTGACAAATTTTAT 59.470 34.615 0.00 0.00 35.91 1.40
143 144 5.859114 GTGTGTGTGTGTGTGACAAATTTTA 59.141 36.000 0.00 0.00 35.91 1.52
144 145 4.683781 GTGTGTGTGTGTGTGACAAATTTT 59.316 37.500 0.00 0.00 35.91 1.82
145 146 4.233789 GTGTGTGTGTGTGTGACAAATTT 58.766 39.130 0.00 0.00 35.91 1.82
146 147 3.254411 TGTGTGTGTGTGTGTGACAAATT 59.746 39.130 0.00 0.00 35.91 1.82
147 148 2.816672 TGTGTGTGTGTGTGTGACAAAT 59.183 40.909 0.00 0.00 35.91 2.32
148 149 2.031595 GTGTGTGTGTGTGTGTGACAAA 60.032 45.455 0.00 0.00 35.91 2.83
149 150 1.533299 GTGTGTGTGTGTGTGTGACAA 59.467 47.619 0.00 0.00 35.91 3.18
150 151 1.152510 GTGTGTGTGTGTGTGTGACA 58.847 50.000 0.00 0.00 0.00 3.58
151 152 1.136085 GTGTGTGTGTGTGTGTGTGAC 60.136 52.381 0.00 0.00 0.00 3.67
152 153 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
153 154 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
154 155 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
155 156 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
156 157 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
157 158 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
158 159 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
159 160 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
160 161 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
161 162 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
162 163 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
163 164 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
164 165 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
165 166 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
166 167 7.094975 GGTTAATATATGTGTGTGTGTGTGTGT 60.095 37.037 0.00 0.00 0.00 3.72
167 168 7.119116 AGGTTAATATATGTGTGTGTGTGTGTG 59.881 37.037 0.00 0.00 0.00 3.82
168 169 7.165485 AGGTTAATATATGTGTGTGTGTGTGT 58.835 34.615 0.00 0.00 0.00 3.72
169 170 7.609760 AGGTTAATATATGTGTGTGTGTGTG 57.390 36.000 0.00 0.00 0.00 3.82
170 171 7.880713 TGAAGGTTAATATATGTGTGTGTGTGT 59.119 33.333 0.00 0.00 0.00 3.72
171 172 8.262715 TGAAGGTTAATATATGTGTGTGTGTG 57.737 34.615 0.00 0.00 0.00 3.82
172 173 8.856153 TTGAAGGTTAATATATGTGTGTGTGT 57.144 30.769 0.00 0.00 0.00 3.72
228 229 2.017049 GAGGCTCTCAGTCTCTCAGAC 58.983 57.143 7.40 0.00 43.38 3.51
260 261 2.420022 GTGAATTGTCGGATCAAGTGGG 59.580 50.000 0.00 0.00 0.00 4.61
263 264 5.411781 GTCTAGTGAATTGTCGGATCAAGT 58.588 41.667 0.00 0.00 0.00 3.16
272 273 1.653151 GCCCCGTCTAGTGAATTGTC 58.347 55.000 0.00 0.00 0.00 3.18
278 279 3.075005 GCTGGCCCCGTCTAGTGA 61.075 66.667 0.00 0.00 0.00 3.41
290 291 0.465097 ATGTAGTGCATCCAGCTGGC 60.465 55.000 28.91 16.99 45.94 4.85
292 293 2.034104 ACATGTAGTGCATCCAGCTG 57.966 50.000 6.78 6.78 45.94 4.24
293 294 2.362736 CAACATGTAGTGCATCCAGCT 58.637 47.619 0.00 0.00 45.94 4.24
312 313 1.538849 CGTGAGCAATCCATCGATCCA 60.539 52.381 0.00 0.00 0.00 3.41
320 321 2.183478 AACACATCGTGAGCAATCCA 57.817 45.000 0.24 0.00 36.96 3.41
378 379 6.752168 ACAAGCTGAATTTAATTGTGAGCTT 58.248 32.000 16.22 16.22 44.13 3.74
456 457 8.905702 CAACAGTTTCTATGAACTAATTTGTGC 58.094 33.333 0.00 0.00 37.76 4.57
517 518 8.853077 TCATAAGAGCAATTTCTGAAGAAAGA 57.147 30.769 10.94 0.00 45.87 2.52
595 596 8.750298 GGCTTACTTATCTAGTGCCATATAAGA 58.250 37.037 11.56 0.00 42.64 2.10
727 728 4.307259 AGATGGGGCTCAATTAGAGGTAA 58.693 43.478 0.00 0.00 44.86 2.85
739 740 6.038714 CAGTTATGAAGTAAAAGATGGGGCTC 59.961 42.308 0.00 0.00 0.00 4.70
989 1257 4.221422 ATCCCATCGTGGACGGCG 62.221 66.667 4.80 4.80 40.96 6.46
1282 1550 6.156775 TCATCTCCACAGATCAGAACCAAATA 59.843 38.462 0.00 0.00 37.25 1.40
2090 2365 2.746279 AACCCTTGGTGAACATGTGA 57.254 45.000 0.00 0.00 35.34 3.58
2096 2371 3.056821 GCATAAGGAAACCCTTGGTGAAC 60.057 47.826 6.96 0.00 43.56 3.18
2102 2377 3.085952 TCAGGCATAAGGAAACCCTTG 57.914 47.619 6.96 0.00 43.56 3.61
2188 2463 5.163754 ACCTTTGCAGACGTCTTATATTTGC 60.164 40.000 17.26 15.68 0.00 3.68
2235 2510 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
2236 2511 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2237 2512 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2238 2513 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2239 2514 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2240 2515 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2241 2516 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2242 2517 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2243 2518 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2244 2519 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2245 2520 1.986698 ACGACAAGTATTTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
2246 2521 5.844301 TTTTACGACAAGTATTTCCGGAC 57.156 39.130 1.83 0.00 34.88 4.79
2247 2522 5.352016 CCATTTTACGACAAGTATTTCCGGA 59.648 40.000 0.00 0.00 34.88 5.14
2248 2523 5.352016 TCCATTTTACGACAAGTATTTCCGG 59.648 40.000 0.00 0.00 34.88 5.14
2249 2524 6.411630 TCCATTTTACGACAAGTATTTCCG 57.588 37.500 0.00 0.00 34.88 4.30
2250 2525 8.060090 CGTATCCATTTTACGACAAGTATTTCC 58.940 37.037 0.00 0.00 43.88 3.13
2251 2526 8.810427 TCGTATCCATTTTACGACAAGTATTTC 58.190 33.333 2.12 0.00 44.57 2.17
2252 2527 8.706492 TCGTATCCATTTTACGACAAGTATTT 57.294 30.769 2.12 0.00 44.57 1.40
2261 2536 6.285224 ACATCCATTCGTATCCATTTTACGA 58.715 36.000 2.12 2.12 46.89 3.43
2262 2537 6.539649 ACATCCATTCGTATCCATTTTACG 57.460 37.500 0.00 0.00 42.83 3.18
2263 2538 9.436957 AGATACATCCATTCGTATCCATTTTAC 57.563 33.333 0.00 0.00 43.27 2.01
2265 2540 9.658799 CTAGATACATCCATTCGTATCCATTTT 57.341 33.333 0.00 0.00 43.27 1.82
2266 2541 9.035890 TCTAGATACATCCATTCGTATCCATTT 57.964 33.333 0.00 0.00 43.27 2.32
2267 2542 8.595362 TCTAGATACATCCATTCGTATCCATT 57.405 34.615 0.00 0.00 43.27 3.16
2268 2543 8.470805 GTTCTAGATACATCCATTCGTATCCAT 58.529 37.037 0.00 0.00 43.27 3.41
2269 2544 7.670140 AGTTCTAGATACATCCATTCGTATCCA 59.330 37.037 0.00 0.00 43.27 3.41
2270 2545 8.057536 AGTTCTAGATACATCCATTCGTATCC 57.942 38.462 0.00 0.00 43.27 2.59
2298 2573 8.690884 CGAGGAATGGATGTATCTAGATGTATT 58.309 37.037 15.79 6.57 0.00 1.89
2299 2574 7.286546 CCGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
2300 2575 6.603599 CCGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
2301 2576 5.420421 CCGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
2302 2577 5.654209 TCCGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
2303 2578 5.654650 GTCCGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 37.93 1.98
2304 2579 5.010933 GTCCGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 37.93 2.43
2305 2580 4.767409 TGTCCGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 37.93 2.43
2306 2581 4.736473 TGTCCGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 37.93 1.98
2307 2582 3.576861 TGTCCGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 37.93 1.98
2308 2583 4.202264 ACTTGTCCGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 37.93 2.24
2309 2584 3.711704 ACTTGTCCGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 37.93 2.29
2310 2585 3.104512 ACTTGTCCGAGGAATGGATGTA 58.895 45.455 0.00 0.00 37.93 2.29
2311 2586 1.909302 ACTTGTCCGAGGAATGGATGT 59.091 47.619 0.00 0.00 37.93 3.06
2312 2587 2.698855 ACTTGTCCGAGGAATGGATG 57.301 50.000 0.00 0.00 37.93 3.51
2313 2588 5.373812 AAATACTTGTCCGAGGAATGGAT 57.626 39.130 0.00 0.00 37.93 3.41
2314 2589 4.837093 AAATACTTGTCCGAGGAATGGA 57.163 40.909 0.00 0.00 0.00 3.41
2315 2590 4.034048 CGAAAATACTTGTCCGAGGAATGG 59.966 45.833 0.00 0.00 0.00 3.16
2316 2591 4.034048 CCGAAAATACTTGTCCGAGGAATG 59.966 45.833 0.00 0.00 0.00 2.67
2317 2592 4.081309 TCCGAAAATACTTGTCCGAGGAAT 60.081 41.667 0.00 0.00 0.00 3.01
2318 2593 3.258872 TCCGAAAATACTTGTCCGAGGAA 59.741 43.478 0.00 0.00 0.00 3.36
2319 2594 2.827322 TCCGAAAATACTTGTCCGAGGA 59.173 45.455 0.00 0.00 0.00 3.71
2320 2595 2.928116 GTCCGAAAATACTTGTCCGAGG 59.072 50.000 0.00 0.00 0.00 4.63
2321 2596 2.597305 CGTCCGAAAATACTTGTCCGAG 59.403 50.000 0.00 0.00 0.00 4.63
2322 2597 2.598589 CGTCCGAAAATACTTGTCCGA 58.401 47.619 0.00 0.00 0.00 4.55
2323 2598 1.657094 CCGTCCGAAAATACTTGTCCG 59.343 52.381 0.00 0.00 0.00 4.79
2324 2599 2.928116 CTCCGTCCGAAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
2325 2600 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2326 2601 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2327 2602 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2328 2603 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2329 2604 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2330 2605 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2331 2606 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2332 2607 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
2333 2608 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
2334 2609 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2335 2610 0.911769 TACTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
2336 2611 0.911769 TTACTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
2337 2612 1.978454 ATTACTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
2338 2613 3.825585 CCTAATTACTACTCCCTCCGTCC 59.174 52.174 0.00 0.00 0.00 4.79
2339 2614 4.723309 TCCTAATTACTACTCCCTCCGTC 58.277 47.826 0.00 0.00 0.00 4.79
2340 2615 4.803329 TCCTAATTACTACTCCCTCCGT 57.197 45.455 0.00 0.00 0.00 4.69
2341 2616 7.957992 ATATTCCTAATTACTACTCCCTCCG 57.042 40.000 0.00 0.00 0.00 4.63
2492 2767 5.403466 GCAAACATGATTCTCTTGTCCAAAC 59.597 40.000 0.00 0.00 34.23 2.93
2501 2776 4.015084 CCTTCAGGCAAACATGATTCTCT 58.985 43.478 0.00 0.00 0.00 3.10
2675 2950 4.577875 TGGCCAAATTTTAGAAGCATTGG 58.422 39.130 0.61 0.00 40.16 3.16
2694 2997 3.340814 TGAGGAAGAGTTCAGATTGGC 57.659 47.619 0.00 0.00 0.00 4.52
2751 3054 1.218875 CGCGCACCTCTGTACAACAA 61.219 55.000 8.75 0.00 0.00 2.83
3009 3312 1.203428 TGGGACATCCTTCTCCTCCAA 60.203 52.381 0.00 0.00 36.20 3.53
3224 3527 2.157738 GCAGTCCAGTTGAGATGCTTT 58.842 47.619 0.00 0.00 35.15 3.51
3456 3759 5.541868 AGTCACCATCCATCTAACCTGATAG 59.458 44.000 0.00 0.00 0.00 2.08
3468 3771 5.867903 TTTCAACAAAAGTCACCATCCAT 57.132 34.783 0.00 0.00 0.00 3.41
3489 3792 5.772825 TCTGCAAGCTGTAACAAATCTTT 57.227 34.783 0.00 0.00 0.00 2.52
3637 4023 2.595463 GAGGCTGCTGCACCACAA 60.595 61.111 17.89 0.00 41.91 3.33
3704 4095 2.031420 GCTCAAAACGTTCAACCCTACC 60.031 50.000 0.00 0.00 0.00 3.18
3708 4099 1.269051 CCTGCTCAAAACGTTCAACCC 60.269 52.381 0.00 0.00 0.00 4.11
3848 4239 0.790207 TCGCAAACTGCAACGAGATC 59.210 50.000 0.00 0.00 45.36 2.75
3865 4256 3.003173 TTGTCCAGAGCCCCCTCG 61.003 66.667 0.00 0.00 43.05 4.63
3956 4347 4.239203 GAGCGCTCGATCGACGGT 62.239 66.667 30.20 30.20 42.82 4.83
4101 4500 2.224719 GCAAGGCATCTCTGACCCATAT 60.225 50.000 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.