Multiple sequence alignment - TraesCS2A01G288100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G288100 chr2A 100.000 7418 0 0 1 7418 494954249 494961666 0.000000e+00 13699.0
1 TraesCS2A01G288100 chr2A 94.012 167 10 0 7252 7418 176284497 176284663 3.440000e-63 254.0
2 TraesCS2A01G288100 chr2A 92.208 77 6 0 5981 6057 744446300 744446376 7.870000e-20 110.0
3 TraesCS2A01G288100 chr2A 94.915 59 3 0 6962 7020 494961159 494961217 7.920000e-15 93.5
4 TraesCS2A01G288100 chr2D 97.505 4328 76 10 2129 6425 366091119 366095445 0.000000e+00 7365.0
5 TraesCS2A01G288100 chr2D 97.752 1112 19 5 882 1993 366089370 366090475 0.000000e+00 1910.0
6 TraesCS2A01G288100 chr2D 91.339 889 72 5 1 885 528992038 528992925 0.000000e+00 1210.0
7 TraesCS2A01G288100 chr2D 91.216 888 76 2 1 886 270906174 270905287 0.000000e+00 1206.0
8 TraesCS2A01G288100 chr2D 98.492 199 3 0 6426 6624 366095479 366095677 1.180000e-92 351.0
9 TraesCS2A01G288100 chr2D 85.185 81 12 0 5984 6064 378360300 378360220 4.770000e-12 84.2
10 TraesCS2A01G288100 chr2B 94.409 4543 179 36 2194 6684 434691137 434695656 0.000000e+00 6913.0
11 TraesCS2A01G288100 chr2B 96.315 597 18 2 883 1476 434689266 434689861 0.000000e+00 977.0
12 TraesCS2A01G288100 chr2B 96.545 521 10 2 1473 1993 434689896 434690408 0.000000e+00 856.0
13 TraesCS2A01G288100 chrUn 91.874 886 68 4 1 882 376299195 376300080 0.000000e+00 1234.0
14 TraesCS2A01G288100 chrUn 91.676 889 70 4 1 885 376527942 376527054 0.000000e+00 1229.0
15 TraesCS2A01G288100 chr6D 91.246 891 72 6 1 886 162123497 162122608 0.000000e+00 1208.0
16 TraesCS2A01G288100 chr6D 91.073 885 73 6 1 882 22241152 22242033 0.000000e+00 1192.0
17 TraesCS2A01G288100 chr6D 94.891 274 14 0 6696 6969 360332650 360332377 5.320000e-116 429.0
18 TraesCS2A01G288100 chr6D 93.868 212 11 1 7047 7256 360332316 360332105 1.200000e-82 318.0
19 TraesCS2A01G288100 chr6D 93.413 167 10 1 7252 7418 200913811 200913976 5.750000e-61 246.0
20 TraesCS2A01G288100 chr6D 92.814 167 11 1 7252 7418 200883520 200883685 2.670000e-59 241.0
21 TraesCS2A01G288100 chr6D 92.216 167 13 0 7252 7418 139955415 139955581 3.460000e-58 237.0
22 TraesCS2A01G288100 chr6D 88.636 88 9 1 6959 7045 360332439 360332352 1.020000e-18 106.0
23 TraesCS2A01G288100 chr4D 91.114 889 75 4 1 885 231205058 231204170 0.000000e+00 1201.0
24 TraesCS2A01G288100 chr5D 91.053 883 71 6 1 880 379230930 379230053 0.000000e+00 1186.0
25 TraesCS2A01G288100 chr5D 90.807 892 73 9 1 886 515633979 515634867 0.000000e+00 1184.0
26 TraesCS2A01G288100 chr5D 93.594 281 16 1 6691 6969 551842404 551842684 1.150000e-112 418.0
27 TraesCS2A01G288100 chr5D 94.660 206 9 1 7047 7250 551842745 551842950 1.200000e-82 318.0
28 TraesCS2A01G288100 chr1B 95.255 274 13 0 6696 6969 675896492 675896219 1.140000e-117 435.0
29 TraesCS2A01G288100 chr1B 91.038 212 16 2 7047 7256 675896158 675895948 4.380000e-72 283.0
30 TraesCS2A01G288100 chr1B 96.000 75 3 0 6971 7045 675896268 675896194 1.010000e-23 122.0
31 TraesCS2A01G288100 chr1D 94.891 274 14 0 6696 6969 462760118 462759845 5.320000e-116 429.0
32 TraesCS2A01G288100 chr1D 93.396 212 12 1 7047 7256 421073571 421073360 5.590000e-81 313.0
33 TraesCS2A01G288100 chr1D 92.453 212 14 1 7047 7256 462759784 462759573 1.210000e-77 302.0
34 TraesCS2A01G288100 chr1D 92.814 167 12 0 7252 7418 133234709 133234543 7.440000e-60 243.0
35 TraesCS2A01G288100 chr1D 96.000 75 3 0 6971 7045 421073681 421073607 1.010000e-23 122.0
36 TraesCS2A01G288100 chr1D 96.000 75 3 0 6971 7045 462759894 462759820 1.010000e-23 122.0
37 TraesCS2A01G288100 chr5B 93.796 274 17 0 6696 6969 553936268 553936541 5.360000e-111 412.0
38 TraesCS2A01G288100 chr5B 94.660 206 9 1 7047 7250 553936602 553936807 1.200000e-82 318.0
39 TraesCS2A01G288100 chr5B 92.857 84 6 0 6962 7045 553936483 553936566 1.010000e-23 122.0
40 TraesCS2A01G288100 chr4A 93.773 273 17 0 6697 6969 519678544 519678816 1.930000e-110 411.0
41 TraesCS2A01G288100 chr5A 93.431 274 18 0 6696 6969 143349768 143349495 2.490000e-109 407.0
42 TraesCS2A01G288100 chr5A 91.038 212 15 3 7048 7256 673926076 673925866 4.380000e-72 283.0
43 TraesCS2A01G288100 chr5A 94.444 162 9 0 7252 7413 345247265 345247426 4.440000e-62 250.0
44 TraesCS2A01G288100 chr5A 92.814 167 12 0 7252 7418 656056694 656056528 7.440000e-60 243.0
45 TraesCS2A01G288100 chr5A 92.216 167 13 0 7252 7418 511240005 511239839 3.460000e-58 237.0
46 TraesCS2A01G288100 chr5A 85.185 81 10 2 5985 6064 687872560 687872481 1.720000e-11 82.4
47 TraesCS2A01G288100 chr3D 92.553 282 21 0 6688 6969 446078413 446078694 8.960000e-109 405.0
48 TraesCS2A01G288100 chr7B 93.066 274 19 0 6696 6969 729807104 729807377 1.160000e-107 401.0
49 TraesCS2A01G288100 chr7B 93.689 206 9 2 7047 7250 729807438 729807641 9.350000e-79 305.0
50 TraesCS2A01G288100 chr4B 93.171 205 12 1 7047 7249 394605379 394605175 4.350000e-77 300.0
51 TraesCS2A01G288100 chr6A 94.083 169 7 3 7252 7418 217577786 217577619 3.440000e-63 254.0
52 TraesCS2A01G288100 chr6A 91.667 84 7 0 5981 6064 412366252 412366335 4.700000e-22 117.0
53 TraesCS2A01G288100 chr6A 93.651 63 3 1 5983 6044 263870656 263870594 7.920000e-15 93.5
54 TraesCS2A01G288100 chr7D 90.909 77 6 1 5982 6057 246808015 246807939 1.320000e-17 102.0
55 TraesCS2A01G288100 chr6B 88.889 81 9 0 5981 6061 469288127 469288207 4.740000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G288100 chr2A 494954249 494961666 7417 False 6896.250000 13699 97.457500 1 7418 2 chr2A.!!$F3 7417
1 TraesCS2A01G288100 chr2D 366089370 366095677 6307 False 3208.666667 7365 97.916333 882 6624 3 chr2D.!!$F2 5742
2 TraesCS2A01G288100 chr2D 528992038 528992925 887 False 1210.000000 1210 91.339000 1 885 1 chr2D.!!$F1 884
3 TraesCS2A01G288100 chr2D 270905287 270906174 887 True 1206.000000 1206 91.216000 1 886 1 chr2D.!!$R1 885
4 TraesCS2A01G288100 chr2B 434689266 434695656 6390 False 2915.333333 6913 95.756333 883 6684 3 chr2B.!!$F1 5801
5 TraesCS2A01G288100 chrUn 376299195 376300080 885 False 1234.000000 1234 91.874000 1 882 1 chrUn.!!$F1 881
6 TraesCS2A01G288100 chrUn 376527054 376527942 888 True 1229.000000 1229 91.676000 1 885 1 chrUn.!!$R1 884
7 TraesCS2A01G288100 chr6D 162122608 162123497 889 True 1208.000000 1208 91.246000 1 886 1 chr6D.!!$R1 885
8 TraesCS2A01G288100 chr6D 22241152 22242033 881 False 1192.000000 1192 91.073000 1 882 1 chr6D.!!$F1 881
9 TraesCS2A01G288100 chr6D 360332105 360332650 545 True 284.333333 429 92.465000 6696 7256 3 chr6D.!!$R2 560
10 TraesCS2A01G288100 chr4D 231204170 231205058 888 True 1201.000000 1201 91.114000 1 885 1 chr4D.!!$R1 884
11 TraesCS2A01G288100 chr5D 379230053 379230930 877 True 1186.000000 1186 91.053000 1 880 1 chr5D.!!$R1 879
12 TraesCS2A01G288100 chr5D 515633979 515634867 888 False 1184.000000 1184 90.807000 1 886 1 chr5D.!!$F1 885
13 TraesCS2A01G288100 chr5D 551842404 551842950 546 False 368.000000 418 94.127000 6691 7250 2 chr5D.!!$F2 559
14 TraesCS2A01G288100 chr1B 675895948 675896492 544 True 280.000000 435 94.097667 6696 7256 3 chr1B.!!$R1 560
15 TraesCS2A01G288100 chr1D 462759573 462760118 545 True 284.333333 429 94.448000 6696 7256 3 chr1D.!!$R3 560
16 TraesCS2A01G288100 chr5B 553936268 553936807 539 False 284.000000 412 93.771000 6696 7250 3 chr5B.!!$F1 554
17 TraesCS2A01G288100 chr7B 729807104 729807641 537 False 353.000000 401 93.377500 6696 7250 2 chr7B.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 788 0.106894 AAAATTTTTGCGGGCCGGAA 59.893 45.0 29.49 29.49 35.06 4.30 F
2081 2384 0.521291 CACAAATGCCGGGTACACTG 59.479 55.0 2.18 0.00 0.00 3.66 F
2118 2421 0.250295 CTGTGTGTGTGTGTAGGGGG 60.250 60.0 0.00 0.00 0.00 5.40 F
3556 4153 0.468400 TTTGGGGCCAAAACTAGCGT 60.468 50.0 4.39 0.00 42.16 5.07 F
4785 5384 0.689623 AGAAGTGGAGGTGAGGCTTG 59.310 55.0 0.00 0.00 0.00 4.01 F
5102 5705 0.877743 GTGAAACTGAAGCTCTGGGC 59.122 55.0 0.00 0.00 42.19 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2402 0.250295 CCCCCTACACACACACACAG 60.250 60.000 0.00 0.0 0.00 3.66 R
3444 4040 1.843851 ACAGGGTGTTGAAGGAACAGA 59.156 47.619 0.00 0.0 45.46 3.41 R
4077 4676 2.797177 AGAAGCCAAGGGTCTCATTC 57.203 50.000 0.00 0.0 0.00 2.67 R
5384 5987 3.138283 TCTCAACCTTGACCAGTGGAAAT 59.862 43.478 18.40 0.0 32.90 2.17 R
6297 6919 1.071471 CACAACCGAAGCCACCTCT 59.929 57.895 0.00 0.0 0.00 3.69 R
6990 7646 0.028902 GTTCTGCACCGGACAAACAC 59.971 55.000 9.46 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 7.049133 CCCAAAATCAAAATAAGCATCCATCA 58.951 34.615 0.00 0.00 0.00 3.07
108 109 1.226717 CTCGAAGTGAGCTACCGCC 60.227 63.158 0.00 0.00 38.03 6.13
234 235 1.785041 GAGCCGCAACACTTTCTGCA 61.785 55.000 0.00 0.00 38.52 4.41
246 247 0.599991 TTTCTGCATGCAGTCGTCGT 60.600 50.000 39.08 0.00 43.96 4.34
500 502 1.742761 CCACAGATCTGCAAATCCGT 58.257 50.000 22.83 0.00 0.00 4.69
666 670 1.819632 GCGCGGGATGAAATGTCCT 60.820 57.895 8.83 0.00 36.00 3.85
691 695 2.366266 ACCAACCGCTTCCGCTTATATA 59.634 45.455 0.00 0.00 0.00 0.86
745 749 3.795977 TTCCTGGGTTGGGGTCGGA 62.796 63.158 0.00 0.00 0.00 4.55
752 756 1.334160 GGTTGGGGTCGGAATTTTGT 58.666 50.000 0.00 0.00 0.00 2.83
759 763 1.669760 TCGGAATTTTGTCGCGCCT 60.670 52.632 0.00 0.00 0.00 5.52
772 776 2.914838 GTCGCGCCTCCTAAAATTTTTG 59.085 45.455 9.06 7.07 0.00 2.44
773 777 1.653609 CGCGCCTCCTAAAATTTTTGC 59.346 47.619 9.06 4.26 0.00 3.68
776 782 2.616960 GCCTCCTAAAATTTTTGCGGG 58.383 47.619 9.06 11.78 0.00 6.13
778 784 2.616960 CTCCTAAAATTTTTGCGGGCC 58.383 47.619 9.06 0.00 0.00 5.80
782 788 0.106894 AAAATTTTTGCGGGCCGGAA 59.893 45.000 29.49 29.49 35.06 4.30
783 789 0.601576 AAATTTTTGCGGGCCGGAAC 60.602 50.000 32.81 14.05 36.85 3.62
784 790 1.749334 AATTTTTGCGGGCCGGAACA 61.749 50.000 32.81 24.09 36.85 3.18
795 801 4.540153 CGGAACAGATGCGGGATT 57.460 55.556 0.00 0.00 39.48 3.01
800 806 2.689983 GGAACAGATGCGGGATTTGATT 59.310 45.455 7.02 0.00 0.00 2.57
803 809 2.300433 CAGATGCGGGATTTGATTGGA 58.700 47.619 0.00 0.00 0.00 3.53
810 816 3.616219 CGGGATTTGATTGGACTGGTTA 58.384 45.455 0.00 0.00 0.00 2.85
814 820 5.893824 GGGATTTGATTGGACTGGTTATTCT 59.106 40.000 0.00 0.00 0.00 2.40
822 830 3.585289 TGGACTGGTTATTCTGCCTAACA 59.415 43.478 0.00 0.00 31.98 2.41
854 862 2.679336 CGGTTATTTTACGGGTTGGGAG 59.321 50.000 0.00 0.00 0.00 4.30
867 875 4.892291 GGGAGGGGATGCGGGGTA 62.892 72.222 0.00 0.00 0.00 3.69
888 896 6.869388 GGGTATGCTAGAGTTGCTCTTATTAC 59.131 42.308 3.87 2.99 41.50 1.89
904 912 0.756903 TTACCCAGGCCTATCGCTTC 59.243 55.000 3.98 0.00 37.74 3.86
915 923 4.081972 GGCCTATCGCTTCTGAATCATCTA 60.082 45.833 0.00 0.00 37.74 1.98
948 956 4.445710 TAGCGGGCCCCAGACGTA 62.446 66.667 18.66 0.00 0.00 3.57
1058 1066 1.109323 GCAGCAAAACCTCACCCACT 61.109 55.000 0.00 0.00 0.00 4.00
1200 1208 0.892755 ACGTGCCGTCCTTCAAGATA 59.107 50.000 0.00 0.00 33.69 1.98
1760 1809 6.986904 ACTTGCTGCCTTAAATTCTACTAC 57.013 37.500 0.00 0.00 0.00 2.73
1761 1810 6.712276 ACTTGCTGCCTTAAATTCTACTACT 58.288 36.000 0.00 0.00 0.00 2.57
1762 1811 6.595716 ACTTGCTGCCTTAAATTCTACTACTG 59.404 38.462 0.00 0.00 0.00 2.74
1763 1812 6.049955 TGCTGCCTTAAATTCTACTACTGT 57.950 37.500 0.00 0.00 0.00 3.55
1764 1813 7.177832 TGCTGCCTTAAATTCTACTACTGTA 57.822 36.000 0.00 0.00 0.00 2.74
1988 2037 5.588958 TCTAGAATGATCCACACTGTGAG 57.411 43.478 15.86 6.52 35.23 3.51
2078 2381 3.674906 GCACAAATGCCGGGTACA 58.325 55.556 2.18 0.00 46.97 2.90
2079 2382 1.211709 GCACAAATGCCGGGTACAC 59.788 57.895 2.18 0.00 46.97 2.90
2080 2383 1.241315 GCACAAATGCCGGGTACACT 61.241 55.000 2.18 0.00 46.97 3.55
2081 2384 0.521291 CACAAATGCCGGGTACACTG 59.479 55.000 2.18 0.00 0.00 3.66
2088 2391 1.520666 CCGGGTACACTGGTGATCC 59.479 63.158 7.78 8.59 41.03 3.36
2089 2392 1.261938 CCGGGTACACTGGTGATCCA 61.262 60.000 7.78 0.00 41.03 3.41
2099 2402 2.859165 TGGTGATCCAGTTTGACCTC 57.141 50.000 0.00 0.00 39.03 3.85
2100 2403 2.338809 TGGTGATCCAGTTTGACCTCT 58.661 47.619 0.00 0.00 39.03 3.69
2101 2404 2.038952 TGGTGATCCAGTTTGACCTCTG 59.961 50.000 0.00 0.00 39.03 3.35
2102 2405 2.039084 GGTGATCCAGTTTGACCTCTGT 59.961 50.000 0.00 0.00 0.00 3.41
2103 2406 3.070018 GTGATCCAGTTTGACCTCTGTG 58.930 50.000 0.00 0.00 0.00 3.66
2104 2407 2.705658 TGATCCAGTTTGACCTCTGTGT 59.294 45.455 0.00 0.00 0.00 3.72
2105 2408 2.620251 TCCAGTTTGACCTCTGTGTG 57.380 50.000 0.00 0.00 0.00 3.82
2106 2409 1.837439 TCCAGTTTGACCTCTGTGTGT 59.163 47.619 0.00 0.00 0.00 3.72
2107 2410 1.942657 CCAGTTTGACCTCTGTGTGTG 59.057 52.381 0.00 0.00 0.00 3.82
2108 2411 2.632377 CAGTTTGACCTCTGTGTGTGT 58.368 47.619 0.00 0.00 0.00 3.72
2109 2412 2.352651 CAGTTTGACCTCTGTGTGTGTG 59.647 50.000 0.00 0.00 0.00 3.82
2110 2413 2.027192 AGTTTGACCTCTGTGTGTGTGT 60.027 45.455 0.00 0.00 0.00 3.72
2111 2414 2.022764 TTGACCTCTGTGTGTGTGTG 57.977 50.000 0.00 0.00 0.00 3.82
2112 2415 0.901827 TGACCTCTGTGTGTGTGTGT 59.098 50.000 0.00 0.00 0.00 3.72
2113 2416 2.104170 TGACCTCTGTGTGTGTGTGTA 58.896 47.619 0.00 0.00 0.00 2.90
2114 2417 2.100749 TGACCTCTGTGTGTGTGTGTAG 59.899 50.000 0.00 0.00 0.00 2.74
2115 2418 1.412710 ACCTCTGTGTGTGTGTGTAGG 59.587 52.381 0.00 0.00 0.00 3.18
2116 2419 1.270305 CCTCTGTGTGTGTGTGTAGGG 60.270 57.143 0.00 0.00 0.00 3.53
2117 2420 0.756294 TCTGTGTGTGTGTGTAGGGG 59.244 55.000 0.00 0.00 0.00 4.79
2118 2421 0.250295 CTGTGTGTGTGTGTAGGGGG 60.250 60.000 0.00 0.00 0.00 5.40
2192 2752 0.545309 TCAGGGCCTAGTGACTGCTT 60.545 55.000 5.28 0.00 0.00 3.91
2210 2795 7.285629 TGACTGCTTGATTACTGCTATACTAGT 59.714 37.037 0.00 0.00 0.00 2.57
2213 2798 7.139392 TGCTTGATTACTGCTATACTAGTTCG 58.861 38.462 0.00 0.00 0.00 3.95
2312 2898 7.807977 AATGTTAGTGACAGACAAAAGTCAT 57.192 32.000 0.00 0.00 45.46 3.06
2313 2899 6.603237 TGTTAGTGACAGACAAAAGTCATG 57.397 37.500 0.00 0.00 45.46 3.07
2366 2952 7.046033 ACGTTACCCCTATGATAACAAGAAAG 58.954 38.462 0.00 0.00 0.00 2.62
2754 3340 2.851195 ACATTGTCACCACAGAAGGTC 58.149 47.619 0.00 0.00 40.77 3.85
2775 3361 8.664211 AGGTCGAAGAATTAAACCATATTCTC 57.336 34.615 0.00 0.00 39.53 2.87
2793 3379 3.555966 TCTCGCTGTCTTGGATGATCTA 58.444 45.455 0.00 0.00 0.00 1.98
2807 3393 6.228995 TGGATGATCTATCAGCAGAACAATC 58.771 40.000 10.13 0.00 44.53 2.67
2812 3398 2.502142 ATCAGCAGAACAATCAGGCA 57.498 45.000 0.00 0.00 32.43 4.75
3399 3995 1.604604 TTGCCACTGGTTCAAGCTAC 58.395 50.000 0.00 0.00 0.00 3.58
3555 4152 0.676736 TTTTGGGGCCAAAACTAGCG 59.323 50.000 5.32 0.00 46.80 4.26
3556 4153 0.468400 TTTGGGGCCAAAACTAGCGT 60.468 50.000 4.39 0.00 42.16 5.07
3886 4485 5.449553 AGGACAAGTCTCATCCAAAGTTTT 58.550 37.500 0.00 0.00 34.73 2.43
4369 4968 2.667724 CGAAAGCTATCCGTCGGTATCC 60.668 54.545 11.88 0.00 0.00 2.59
4435 5034 0.958091 TCGCAACCCTTCACCATTTG 59.042 50.000 0.00 0.00 0.00 2.32
4512 5111 4.436242 TTGTTAGCTCAACTACTCTCCG 57.564 45.455 0.00 0.00 38.05 4.63
4534 5133 9.595823 CTCCGATTAGAGTTTTTGGAAGTATTA 57.404 33.333 0.00 0.00 0.00 0.98
4535 5134 9.947433 TCCGATTAGAGTTTTTGGAAGTATTAA 57.053 29.630 0.00 0.00 0.00 1.40
4667 5266 3.946402 TGTGTGAAGTGTATTTTGCACG 58.054 40.909 0.00 0.00 41.36 5.34
4785 5384 0.689623 AGAAGTGGAGGTGAGGCTTG 59.310 55.000 0.00 0.00 0.00 4.01
4852 5451 9.891828 TTATTACTACTGAAACATTTGCAGTTG 57.108 29.630 4.86 5.98 42.40 3.16
4914 5513 5.551760 ATGATAAGTTTCTTCTTGGCACG 57.448 39.130 0.00 0.00 0.00 5.34
5042 5645 8.565896 TGACTTGTCATATCTTATTGCTGTTT 57.434 30.769 0.00 0.00 0.00 2.83
5102 5705 0.877743 GTGAAACTGAAGCTCTGGGC 59.122 55.000 0.00 0.00 42.19 5.36
5138 5741 4.828072 AGAGTCTAAAGGGGATGTTGAC 57.172 45.455 0.00 0.00 0.00 3.18
5384 5987 6.526526 TGTTGCTCCAATTAAGTGTACTGTA 58.473 36.000 1.80 0.00 0.00 2.74
5496 6099 3.469008 TCACAGGTACCACTGAACTTG 57.531 47.619 15.94 3.15 40.97 3.16
5603 6206 8.498358 CCTAAATTTTGCTTTTGATCTTTGGTC 58.502 33.333 0.00 0.00 0.00 4.02
5793 6399 7.928167 TGATATTTACCGCATGAGATATCATCC 59.072 37.037 11.84 0.00 33.77 3.51
5904 6510 8.494347 TGTTTTCTGTTTTCTTTTCAACATGTG 58.506 29.630 0.00 0.00 32.50 3.21
6308 6930 0.108567 GAGGTCGAAGAGGTGGCTTC 60.109 60.000 0.00 0.00 40.62 3.86
6441 7096 2.338500 GTACTGGCTTCCTGAGTTTCG 58.662 52.381 0.00 0.00 0.00 3.46
6642 7298 6.698008 TTGTTCAGATTTGTCATGTGAGTT 57.302 33.333 0.00 0.00 0.00 3.01
6673 7329 6.289482 TCCCACAATAGAAGTATCCCTAGA 57.711 41.667 0.00 0.00 0.00 2.43
6784 7440 0.108585 ATGCAGGTGGTTCGTCAGTT 59.891 50.000 0.00 0.00 0.00 3.16
6788 7444 2.494059 CAGGTGGTTCGTCAGTTCAAT 58.506 47.619 0.00 0.00 0.00 2.57
6839 7495 1.039785 AGCTAGCTCATGAGGTGCGA 61.040 55.000 32.43 15.41 40.84 5.10
6846 7502 2.864097 GCTCATGAGGTGCGATATTCGT 60.864 50.000 23.89 0.00 42.81 3.85
6958 7614 0.028902 GTGTTTGTCCGGTGCAGAAC 59.971 55.000 0.00 9.73 0.00 3.01
6959 7615 0.107410 TGTTTGTCCGGTGCAGAACT 60.107 50.000 0.00 0.00 0.00 3.01
6960 7616 0.307760 GTTTGTCCGGTGCAGAACTG 59.692 55.000 0.00 0.00 34.63 3.16
6961 7617 0.179234 TTTGTCCGGTGCAGAACTGA 59.821 50.000 0.00 0.00 37.33 3.41
6962 7618 0.179234 TTGTCCGGTGCAGAACTGAA 59.821 50.000 0.00 0.00 37.33 3.02
6963 7619 0.396435 TGTCCGGTGCAGAACTGAAT 59.604 50.000 0.00 0.00 37.33 2.57
6964 7620 0.798776 GTCCGGTGCAGAACTGAATG 59.201 55.000 0.00 0.00 37.33 2.67
6965 7621 0.684535 TCCGGTGCAGAACTGAATGA 59.315 50.000 0.00 0.00 37.33 2.57
6966 7622 0.798776 CCGGTGCAGAACTGAATGAC 59.201 55.000 5.97 0.00 37.33 3.06
6967 7623 1.609061 CCGGTGCAGAACTGAATGACT 60.609 52.381 5.97 0.00 37.33 3.41
6968 7624 2.146342 CGGTGCAGAACTGAATGACTT 58.854 47.619 5.97 0.00 37.33 3.01
6969 7625 2.549754 CGGTGCAGAACTGAATGACTTT 59.450 45.455 5.97 0.00 37.33 2.66
6970 7626 3.003689 CGGTGCAGAACTGAATGACTTTT 59.996 43.478 5.97 0.00 37.33 2.27
6971 7627 4.293415 GGTGCAGAACTGAATGACTTTTG 58.707 43.478 5.97 0.00 0.00 2.44
6972 7628 3.732721 GTGCAGAACTGAATGACTTTTGC 59.267 43.478 5.97 0.00 0.00 3.68
6973 7629 3.243501 TGCAGAACTGAATGACTTTTGCC 60.244 43.478 5.97 0.00 0.00 4.52
6974 7630 3.558505 CAGAACTGAATGACTTTTGCCG 58.441 45.455 0.00 0.00 0.00 5.69
6975 7631 3.250762 CAGAACTGAATGACTTTTGCCGA 59.749 43.478 0.00 0.00 0.00 5.54
6976 7632 4.074970 AGAACTGAATGACTTTTGCCGAT 58.925 39.130 0.00 0.00 0.00 4.18
6977 7633 3.837213 ACTGAATGACTTTTGCCGATG 57.163 42.857 0.00 0.00 0.00 3.84
6978 7634 2.095059 ACTGAATGACTTTTGCCGATGC 60.095 45.455 0.00 0.00 38.26 3.91
6987 7643 3.726144 TGCCGATGCATCCCACCA 61.726 61.111 20.87 9.69 44.23 4.17
6988 7644 3.211963 GCCGATGCATCCCACCAC 61.212 66.667 20.87 0.73 37.47 4.16
6989 7645 2.591753 CCGATGCATCCCACCACT 59.408 61.111 20.87 0.00 0.00 4.00
6990 7646 1.820906 CCGATGCATCCCACCACTG 60.821 63.158 20.87 4.16 0.00 3.66
6991 7647 1.078214 CGATGCATCCCACCACTGT 60.078 57.895 20.87 0.00 0.00 3.55
6992 7648 1.371337 CGATGCATCCCACCACTGTG 61.371 60.000 20.87 0.00 42.39 3.66
6993 7649 0.322816 GATGCATCCCACCACTGTGT 60.323 55.000 16.23 0.00 41.09 3.72
6994 7650 0.112995 ATGCATCCCACCACTGTGTT 59.887 50.000 7.08 0.00 41.09 3.32
6995 7651 0.106268 TGCATCCCACCACTGTGTTT 60.106 50.000 7.08 0.00 41.09 2.83
6996 7652 0.314935 GCATCCCACCACTGTGTTTG 59.685 55.000 7.08 3.54 41.09 2.93
6997 7653 1.691196 CATCCCACCACTGTGTTTGT 58.309 50.000 7.08 0.00 41.09 2.83
6998 7654 1.608590 CATCCCACCACTGTGTTTGTC 59.391 52.381 7.08 0.00 41.09 3.18
6999 7655 0.106918 TCCCACCACTGTGTTTGTCC 60.107 55.000 7.08 0.00 41.09 4.02
7000 7656 1.444119 CCCACCACTGTGTTTGTCCG 61.444 60.000 7.08 0.00 41.09 4.79
7001 7657 1.444119 CCACCACTGTGTTTGTCCGG 61.444 60.000 7.08 0.00 41.09 5.14
7002 7658 0.746563 CACCACTGTGTTTGTCCGGT 60.747 55.000 0.00 0.00 37.72 5.28
7003 7659 0.746563 ACCACTGTGTTTGTCCGGTG 60.747 55.000 0.00 0.00 37.63 4.94
7004 7660 1.355210 CACTGTGTTTGTCCGGTGC 59.645 57.895 0.00 0.00 31.74 5.01
7005 7661 1.078072 ACTGTGTTTGTCCGGTGCA 60.078 52.632 0.00 0.00 0.00 4.57
7006 7662 1.095228 ACTGTGTTTGTCCGGTGCAG 61.095 55.000 0.00 3.47 0.00 4.41
7007 7663 0.813610 CTGTGTTTGTCCGGTGCAGA 60.814 55.000 0.00 0.00 0.00 4.26
7008 7664 0.393132 TGTGTTTGTCCGGTGCAGAA 60.393 50.000 0.00 0.00 0.00 3.02
7026 7682 3.755378 CAGAACTGAATGACTTCAAGGGG 59.245 47.826 0.00 0.00 40.78 4.79
7045 7701 0.250513 GGTCTGATTCGGCCTCAACT 59.749 55.000 0.00 0.00 0.00 3.16
7058 7748 1.134580 CCTCAACTCATCTCGCATGGT 60.135 52.381 0.00 0.00 0.00 3.55
7097 7787 4.318618 CGTAGCATCTGAAGCACAATCATC 60.319 45.833 7.68 0.00 0.00 2.92
7138 7828 4.278975 AGAAATTGCTCCTTCTCGTCTT 57.721 40.909 0.00 0.00 0.00 3.01
7184 7876 5.808540 GCATCTGCATCTTGATAAAAAGCAA 59.191 36.000 0.00 0.00 41.59 3.91
7250 7942 1.043673 ATGCTCCGTGTCCTCCCTAC 61.044 60.000 0.00 0.00 0.00 3.18
7252 7944 0.106819 GCTCCGTGTCCTCCCTACTA 60.107 60.000 0.00 0.00 0.00 1.82
7263 7955 3.053146 CCCTACTATGGGGTCCTCG 57.947 63.158 0.00 0.00 43.45 4.63
7264 7956 0.542232 CCCTACTATGGGGTCCTCGG 60.542 65.000 0.00 0.00 43.45 4.63
7265 7957 0.542232 CCTACTATGGGGTCCTCGGG 60.542 65.000 0.00 0.00 0.00 5.14
7266 7958 0.187851 CTACTATGGGGTCCTCGGGT 59.812 60.000 0.00 0.00 0.00 5.28
7267 7959 0.105862 TACTATGGGGTCCTCGGGTG 60.106 60.000 0.00 0.00 0.00 4.61
7268 7960 1.382695 CTATGGGGTCCTCGGGTGT 60.383 63.158 0.00 0.00 0.00 4.16
7269 7961 1.382146 TATGGGGTCCTCGGGTGTC 60.382 63.158 0.00 0.00 0.00 3.67
7270 7962 2.884179 TATGGGGTCCTCGGGTGTCC 62.884 65.000 0.00 0.00 0.00 4.02
7280 7972 3.373226 GGGTGTCCGAGCTGTGTA 58.627 61.111 0.00 0.00 0.00 2.90
7281 7973 1.080025 GGGTGTCCGAGCTGTGTAC 60.080 63.158 0.00 0.00 0.00 2.90
7282 7974 1.080025 GGTGTCCGAGCTGTGTACC 60.080 63.158 0.00 0.00 0.00 3.34
7283 7975 1.663739 GTGTCCGAGCTGTGTACCA 59.336 57.895 0.00 0.00 0.00 3.25
7284 7976 0.246635 GTGTCCGAGCTGTGTACCAT 59.753 55.000 0.00 0.00 0.00 3.55
7285 7977 0.246360 TGTCCGAGCTGTGTACCATG 59.754 55.000 0.00 0.00 0.00 3.66
7286 7978 0.460284 GTCCGAGCTGTGTACCATGG 60.460 60.000 11.19 11.19 0.00 3.66
7287 7979 1.153369 CCGAGCTGTGTACCATGGG 60.153 63.158 18.09 0.00 0.00 4.00
7288 7980 1.815421 CGAGCTGTGTACCATGGGC 60.815 63.158 18.09 8.58 0.00 5.36
7289 7981 1.452108 GAGCTGTGTACCATGGGCC 60.452 63.158 18.09 6.32 0.00 5.80
7290 7982 2.824041 GCTGTGTACCATGGGCCG 60.824 66.667 18.09 1.10 0.00 6.13
7291 7983 2.986290 CTGTGTACCATGGGCCGA 59.014 61.111 18.09 0.00 0.00 5.54
7292 7984 1.298340 CTGTGTACCATGGGCCGAA 59.702 57.895 18.09 0.00 0.00 4.30
7293 7985 1.003112 TGTGTACCATGGGCCGAAC 60.003 57.895 18.09 7.47 0.00 3.95
7294 7986 1.298667 GTGTACCATGGGCCGAACT 59.701 57.895 18.09 0.00 0.00 3.01
7295 7987 1.024579 GTGTACCATGGGCCGAACTG 61.025 60.000 18.09 0.00 0.00 3.16
7296 7988 1.195442 TGTACCATGGGCCGAACTGA 61.195 55.000 18.09 0.00 0.00 3.41
7297 7989 0.180406 GTACCATGGGCCGAACTGAT 59.820 55.000 18.09 0.00 0.00 2.90
7298 7990 0.180171 TACCATGGGCCGAACTGATG 59.820 55.000 18.09 0.00 0.00 3.07
7299 7991 1.825191 CCATGGGCCGAACTGATGG 60.825 63.158 2.85 4.12 0.00 3.51
7300 7992 1.825191 CATGGGCCGAACTGATGGG 60.825 63.158 0.00 0.00 0.00 4.00
7301 7993 2.308722 ATGGGCCGAACTGATGGGT 61.309 57.895 0.00 0.00 0.00 4.51
7302 7994 2.124695 GGGCCGAACTGATGGGTC 60.125 66.667 0.00 0.00 0.00 4.46
7303 7995 2.668632 GGCCGAACTGATGGGTCA 59.331 61.111 0.00 0.00 30.67 4.02
7304 7996 1.224592 GGCCGAACTGATGGGTCAT 59.775 57.895 0.00 0.00 30.67 3.06
7305 7997 1.097547 GGCCGAACTGATGGGTCATG 61.098 60.000 0.00 0.00 30.67 3.07
7306 7998 0.107703 GCCGAACTGATGGGTCATGA 60.108 55.000 0.00 0.00 32.98 3.07
7307 7999 1.678728 GCCGAACTGATGGGTCATGAA 60.679 52.381 0.00 0.00 32.98 2.57
7308 8000 2.283298 CCGAACTGATGGGTCATGAAG 58.717 52.381 0.00 0.00 32.98 3.02
7309 8001 2.093500 CCGAACTGATGGGTCATGAAGA 60.093 50.000 0.00 0.00 32.98 2.87
7310 8002 3.432749 CCGAACTGATGGGTCATGAAGAT 60.433 47.826 0.00 0.00 32.98 2.40
7311 8003 4.202253 CCGAACTGATGGGTCATGAAGATA 60.202 45.833 0.00 0.00 32.98 1.98
7312 8004 4.747108 CGAACTGATGGGTCATGAAGATAC 59.253 45.833 0.00 0.00 32.98 2.24
7313 8005 5.674525 GAACTGATGGGTCATGAAGATACA 58.325 41.667 0.00 0.00 32.98 2.29
7314 8006 5.698741 ACTGATGGGTCATGAAGATACAA 57.301 39.130 0.00 0.00 32.98 2.41
7315 8007 5.678583 ACTGATGGGTCATGAAGATACAAG 58.321 41.667 0.00 0.00 32.98 3.16
7316 8008 5.426509 ACTGATGGGTCATGAAGATACAAGA 59.573 40.000 0.00 0.00 32.98 3.02
7317 8009 6.100859 ACTGATGGGTCATGAAGATACAAGAT 59.899 38.462 0.00 0.00 32.98 2.40
7318 8010 7.290948 ACTGATGGGTCATGAAGATACAAGATA 59.709 37.037 0.00 0.00 32.98 1.98
7319 8011 7.674120 TGATGGGTCATGAAGATACAAGATAG 58.326 38.462 0.00 0.00 0.00 2.08
7320 8012 7.510343 TGATGGGTCATGAAGATACAAGATAGA 59.490 37.037 0.00 0.00 0.00 1.98
7321 8013 7.675161 TGGGTCATGAAGATACAAGATAGAA 57.325 36.000 0.00 0.00 0.00 2.10
7322 8014 7.730084 TGGGTCATGAAGATACAAGATAGAAG 58.270 38.462 0.00 0.00 0.00 2.85
7323 8015 7.565029 TGGGTCATGAAGATACAAGATAGAAGA 59.435 37.037 0.00 0.00 0.00 2.87
7324 8016 7.870445 GGGTCATGAAGATACAAGATAGAAGAC 59.130 40.741 0.00 0.00 0.00 3.01
7325 8017 7.870445 GGTCATGAAGATACAAGATAGAAGACC 59.130 40.741 0.00 0.00 0.00 3.85
7326 8018 8.637986 GTCATGAAGATACAAGATAGAAGACCT 58.362 37.037 0.00 0.00 0.00 3.85
7327 8019 9.206690 TCATGAAGATACAAGATAGAAGACCTT 57.793 33.333 0.00 0.00 0.00 3.50
7328 8020 9.474920 CATGAAGATACAAGATAGAAGACCTTC 57.525 37.037 1.67 1.67 39.78 3.46
7329 8021 8.012957 TGAAGATACAAGATAGAAGACCTTCC 57.987 38.462 6.17 0.00 40.33 3.46
7330 8022 6.987403 AGATACAAGATAGAAGACCTTCCC 57.013 41.667 6.17 0.00 40.33 3.97
7331 8023 5.841783 AGATACAAGATAGAAGACCTTCCCC 59.158 44.000 6.17 0.00 40.33 4.81
7332 8024 3.116174 ACAAGATAGAAGACCTTCCCCC 58.884 50.000 6.17 0.00 40.33 5.40
7333 8025 3.115390 CAAGATAGAAGACCTTCCCCCA 58.885 50.000 6.17 0.00 40.33 4.96
7334 8026 3.718956 CAAGATAGAAGACCTTCCCCCAT 59.281 47.826 6.17 0.00 40.33 4.00
7335 8027 3.321950 AGATAGAAGACCTTCCCCCATG 58.678 50.000 6.17 0.00 40.33 3.66
7336 8028 2.661176 TAGAAGACCTTCCCCCATGT 57.339 50.000 6.17 0.00 40.33 3.21
7337 8029 1.290134 AGAAGACCTTCCCCCATGTC 58.710 55.000 6.17 0.00 40.33 3.06
7338 8030 0.256177 GAAGACCTTCCCCCATGTCC 59.744 60.000 0.00 0.00 33.64 4.02
7339 8031 1.562672 AAGACCTTCCCCCATGTCCG 61.563 60.000 0.00 0.00 0.00 4.79
7340 8032 3.015145 ACCTTCCCCCATGTCCGG 61.015 66.667 0.00 0.00 0.00 5.14
7341 8033 3.809013 CCTTCCCCCATGTCCGGG 61.809 72.222 0.00 3.80 46.94 5.73
7342 8034 3.015145 CTTCCCCCATGTCCGGGT 61.015 66.667 0.00 0.00 45.80 5.28
7343 8035 3.334891 TTCCCCCATGTCCGGGTG 61.335 66.667 0.00 0.00 45.80 4.61
7353 8045 3.273654 TCCGGGTGGGACTCTCCT 61.274 66.667 0.00 0.00 40.94 3.69
7354 8046 2.284699 CCGGGTGGGACTCTCCTT 60.285 66.667 0.00 0.00 38.47 3.36
7355 8047 1.918800 CCGGGTGGGACTCTCCTTT 60.919 63.158 0.00 0.00 38.47 3.11
7356 8048 1.296715 CGGGTGGGACTCTCCTTTG 59.703 63.158 0.00 0.00 36.57 2.77
7357 8049 1.002011 GGGTGGGACTCTCCTTTGC 60.002 63.158 0.00 0.00 36.57 3.68
7358 8050 1.376037 GGTGGGACTCTCCTTTGCG 60.376 63.158 0.00 0.00 36.57 4.85
7359 8051 1.371558 GTGGGACTCTCCTTTGCGT 59.628 57.895 0.00 0.00 36.57 5.24
7360 8052 0.951040 GTGGGACTCTCCTTTGCGTG 60.951 60.000 0.00 0.00 36.57 5.34
7361 8053 1.376037 GGGACTCTCCTTTGCGTGG 60.376 63.158 0.00 0.00 36.57 4.94
7362 8054 1.671742 GGACTCTCCTTTGCGTGGA 59.328 57.895 0.00 0.00 32.53 4.02
7363 8055 0.250513 GGACTCTCCTTTGCGTGGAT 59.749 55.000 0.00 0.00 32.53 3.41
7364 8056 1.363744 GACTCTCCTTTGCGTGGATG 58.636 55.000 0.00 0.00 32.56 3.51
7365 8057 0.036010 ACTCTCCTTTGCGTGGATGG 60.036 55.000 0.00 0.00 32.56 3.51
7366 8058 1.372087 CTCTCCTTTGCGTGGATGGC 61.372 60.000 0.00 0.00 32.56 4.40
7367 8059 1.675310 CTCCTTTGCGTGGATGGCA 60.675 57.895 0.00 0.00 38.93 4.92
7371 8063 2.282391 TTGCGTGGATGGCAAGCT 60.282 55.556 0.00 0.00 44.79 3.74
7372 8064 1.902918 TTGCGTGGATGGCAAGCTT 60.903 52.632 0.00 0.00 44.79 3.74
7373 8065 0.607762 TTGCGTGGATGGCAAGCTTA 60.608 50.000 0.00 0.00 44.79 3.09
7374 8066 0.607762 TGCGTGGATGGCAAGCTTAA 60.608 50.000 0.00 0.00 37.49 1.85
7375 8067 0.179163 GCGTGGATGGCAAGCTTAAC 60.179 55.000 0.00 0.00 0.00 2.01
7376 8068 0.096976 CGTGGATGGCAAGCTTAACG 59.903 55.000 0.00 0.00 0.00 3.18
7377 8069 0.179163 GTGGATGGCAAGCTTAACGC 60.179 55.000 0.00 0.00 39.57 4.84
7378 8070 1.312371 TGGATGGCAAGCTTAACGCC 61.312 55.000 17.25 17.25 46.43 5.68
7379 8071 1.433471 GATGGCAAGCTTAACGCCC 59.567 57.895 20.29 5.54 45.63 6.13
7380 8072 2.322999 GATGGCAAGCTTAACGCCCG 62.323 60.000 20.29 0.00 45.63 6.13
7381 8073 2.744709 GGCAAGCTTAACGCCCGA 60.745 61.111 13.98 0.00 40.07 5.14
7382 8074 2.329614 GGCAAGCTTAACGCCCGAA 61.330 57.895 13.98 0.00 40.07 4.30
7383 8075 1.654023 GGCAAGCTTAACGCCCGAAT 61.654 55.000 13.98 0.00 40.07 3.34
7384 8076 0.523335 GCAAGCTTAACGCCCGAATG 60.523 55.000 0.00 0.00 40.39 2.67
7385 8077 0.802494 CAAGCTTAACGCCCGAATGT 59.198 50.000 0.00 0.00 40.39 2.71
7386 8078 0.802494 AAGCTTAACGCCCGAATGTG 59.198 50.000 0.00 0.00 40.39 3.21
7387 8079 0.321298 AGCTTAACGCCCGAATGTGT 60.321 50.000 0.00 0.00 40.39 3.72
7388 8080 1.066716 AGCTTAACGCCCGAATGTGTA 60.067 47.619 0.00 0.00 40.39 2.90
7389 8081 1.326548 GCTTAACGCCCGAATGTGTAG 59.673 52.381 0.00 0.00 0.00 2.74
7390 8082 2.613691 CTTAACGCCCGAATGTGTAGT 58.386 47.619 0.00 0.00 0.00 2.73
7391 8083 2.747396 TAACGCCCGAATGTGTAGTT 57.253 45.000 0.00 0.00 0.00 2.24
7392 8084 1.886886 AACGCCCGAATGTGTAGTTT 58.113 45.000 0.00 0.00 0.00 2.66
7393 8085 1.435577 ACGCCCGAATGTGTAGTTTC 58.564 50.000 0.00 0.00 0.00 2.78
7394 8086 0.725117 CGCCCGAATGTGTAGTTTCC 59.275 55.000 0.00 0.00 0.00 3.13
7395 8087 1.674817 CGCCCGAATGTGTAGTTTCCT 60.675 52.381 0.00 0.00 0.00 3.36
7396 8088 2.433436 GCCCGAATGTGTAGTTTCCTT 58.567 47.619 0.00 0.00 0.00 3.36
7397 8089 2.817844 GCCCGAATGTGTAGTTTCCTTT 59.182 45.455 0.00 0.00 0.00 3.11
7398 8090 3.119955 GCCCGAATGTGTAGTTTCCTTTC 60.120 47.826 0.00 0.00 0.00 2.62
7399 8091 4.324267 CCCGAATGTGTAGTTTCCTTTCT 58.676 43.478 0.00 0.00 0.00 2.52
7400 8092 4.392138 CCCGAATGTGTAGTTTCCTTTCTC 59.608 45.833 0.00 0.00 0.00 2.87
7401 8093 5.238583 CCGAATGTGTAGTTTCCTTTCTCT 58.761 41.667 0.00 0.00 0.00 3.10
7402 8094 5.120830 CCGAATGTGTAGTTTCCTTTCTCTG 59.879 44.000 0.00 0.00 0.00 3.35
7403 8095 5.696724 CGAATGTGTAGTTTCCTTTCTCTGT 59.303 40.000 0.00 0.00 0.00 3.41
7404 8096 6.866770 CGAATGTGTAGTTTCCTTTCTCTGTA 59.133 38.462 0.00 0.00 0.00 2.74
7405 8097 7.384115 CGAATGTGTAGTTTCCTTTCTCTGTAA 59.616 37.037 0.00 0.00 0.00 2.41
7406 8098 8.974060 AATGTGTAGTTTCCTTTCTCTGTAAA 57.026 30.769 0.00 0.00 0.00 2.01
7407 8099 7.781548 TGTGTAGTTTCCTTTCTCTGTAAAC 57.218 36.000 0.00 0.00 0.00 2.01
7408 8100 6.764560 TGTGTAGTTTCCTTTCTCTGTAAACC 59.235 38.462 0.00 0.00 31.87 3.27
7409 8101 5.987347 TGTAGTTTCCTTTCTCTGTAAACCG 59.013 40.000 0.00 0.00 31.87 4.44
7410 8102 5.286267 AGTTTCCTTTCTCTGTAAACCGA 57.714 39.130 0.00 0.00 31.87 4.69
7411 8103 5.055144 AGTTTCCTTTCTCTGTAAACCGAC 58.945 41.667 0.00 0.00 31.87 4.79
7412 8104 4.950205 TTCCTTTCTCTGTAAACCGACT 57.050 40.909 0.00 0.00 0.00 4.18
7413 8105 6.041296 AGTTTCCTTTCTCTGTAAACCGACTA 59.959 38.462 0.00 0.00 31.87 2.59
7414 8106 6.600882 TTCCTTTCTCTGTAAACCGACTAT 57.399 37.500 0.00 0.00 0.00 2.12
7415 8107 5.962433 TCCTTTCTCTGTAAACCGACTATG 58.038 41.667 0.00 0.00 0.00 2.23
7416 8108 5.479375 TCCTTTCTCTGTAAACCGACTATGT 59.521 40.000 0.00 0.00 0.00 2.29
7417 8109 6.660521 TCCTTTCTCTGTAAACCGACTATGTA 59.339 38.462 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.229306 GTGTAGGATGATGGATGCTTATTTTGA 59.771 37.037 0.00 0.00 34.03 2.69
55 56 4.508551 TTGTGTAGGATGATGGATGCTT 57.491 40.909 0.00 0.00 34.03 3.91
66 67 6.604795 AGCTTGCTCATTATTTTGTGTAGGAT 59.395 34.615 0.00 0.00 0.00 3.24
197 198 2.355481 ACTTCGGGCACGTCGAAC 60.355 61.111 8.89 0.00 40.99 3.95
202 203 4.681978 GGCTCACTTCGGGCACGT 62.682 66.667 8.89 0.00 41.85 4.49
234 235 3.203716 TCATAGAGTACGACGACTGCAT 58.796 45.455 0.00 0.00 0.00 3.96
246 247 0.881796 CCGATGCCGCTCATAGAGTA 59.118 55.000 0.00 0.00 35.05 2.59
390 392 2.123640 GAGCCTCTCCCGTAGCCT 60.124 66.667 0.00 0.00 0.00 4.58
409 411 1.215382 CAAGCGATGGAGTGGTCGA 59.785 57.895 0.00 0.00 40.11 4.20
483 485 1.645034 CGACGGATTTGCAGATCTGT 58.355 50.000 26.94 26.94 45.81 3.41
666 670 2.280524 CGGAAGCGGTTGGTGTGA 60.281 61.111 3.70 0.00 0.00 3.58
745 749 1.816074 TTAGGAGGCGCGACAAAATT 58.184 45.000 17.71 0.00 0.00 1.82
752 756 2.669950 GCAAAAATTTTAGGAGGCGCGA 60.670 45.455 12.10 0.00 0.00 5.87
759 763 1.067495 CGGCCCGCAAAAATTTTAGGA 60.067 47.619 16.81 0.00 0.00 2.94
776 782 3.757248 ATCCCGCATCTGTTCCGGC 62.757 63.158 0.00 0.00 40.65 6.13
778 784 0.378257 CAAATCCCGCATCTGTTCCG 59.622 55.000 0.00 0.00 0.00 4.30
782 788 2.026641 CCAATCAAATCCCGCATCTGT 58.973 47.619 0.00 0.00 0.00 3.41
783 789 2.033801 GTCCAATCAAATCCCGCATCTG 59.966 50.000 0.00 0.00 0.00 2.90
784 790 2.092212 AGTCCAATCAAATCCCGCATCT 60.092 45.455 0.00 0.00 0.00 2.90
793 799 5.127682 GGCAGAATAACCAGTCCAATCAAAT 59.872 40.000 0.00 0.00 0.00 2.32
795 801 4.016444 GGCAGAATAACCAGTCCAATCAA 58.984 43.478 0.00 0.00 0.00 2.57
800 806 3.585289 TGTTAGGCAGAATAACCAGTCCA 59.415 43.478 0.00 0.00 33.13 4.02
803 809 3.007614 ACGTGTTAGGCAGAATAACCAGT 59.992 43.478 0.00 0.00 33.13 4.00
810 816 5.163893 CGTCAAAATACGTGTTAGGCAGAAT 60.164 40.000 0.00 0.00 38.07 2.40
814 820 2.737783 CCGTCAAAATACGTGTTAGGCA 59.262 45.455 0.00 0.00 41.27 4.75
822 830 6.402011 CCCGTAAAATAACCGTCAAAATACGT 60.402 38.462 0.00 0.00 41.27 3.57
854 862 2.185310 CTAGCATACCCCGCATCCCC 62.185 65.000 0.00 0.00 0.00 4.81
867 875 5.366768 TGGGTAATAAGAGCAACTCTAGCAT 59.633 40.000 0.00 0.00 40.28 3.79
888 896 1.070445 CAGAAGCGATAGGCCTGGG 59.930 63.158 17.99 5.23 45.17 4.45
904 912 3.492383 GCGTGTGGTGATAGATGATTCAG 59.508 47.826 0.00 0.00 0.00 3.02
1058 1066 2.668632 CAGCGGCTAGGGTTTGGA 59.331 61.111 0.26 0.00 0.00 3.53
1370 1381 0.610785 GGCCACATTCCCCTCGAAAA 60.611 55.000 0.00 0.00 33.08 2.29
1760 1809 2.427453 ACAGTATGGCTCGGAAGTACAG 59.573 50.000 0.00 0.00 43.62 2.74
1761 1810 2.453521 ACAGTATGGCTCGGAAGTACA 58.546 47.619 0.00 0.00 43.62 2.90
1762 1811 3.004524 CCTACAGTATGGCTCGGAAGTAC 59.995 52.174 0.00 0.00 43.62 2.73
1763 1812 3.220110 CCTACAGTATGGCTCGGAAGTA 58.780 50.000 0.00 0.00 43.62 2.24
1764 1813 2.032620 CCTACAGTATGGCTCGGAAGT 58.967 52.381 0.00 0.00 43.62 3.01
1988 2037 0.739813 GGTGTGGGTCGCATACTGAC 60.740 60.000 14.89 0.00 35.60 3.51
1998 2301 0.968405 TAGTTGTACGGGTGTGGGTC 59.032 55.000 0.00 0.00 0.00 4.46
2028 2331 3.181475 TGAGTGTCTGAGTTGGTTGACTC 60.181 47.826 0.00 0.00 44.97 3.36
2080 2383 2.038952 CAGAGGTCAAACTGGATCACCA 59.961 50.000 0.00 0.00 44.76 4.17
2081 2384 2.039084 ACAGAGGTCAAACTGGATCACC 59.961 50.000 0.00 0.00 38.30 4.02
2082 2385 3.070018 CACAGAGGTCAAACTGGATCAC 58.930 50.000 0.00 0.00 38.30 3.06
2083 2386 2.705658 ACACAGAGGTCAAACTGGATCA 59.294 45.455 0.00 0.00 38.30 2.92
2084 2387 3.070018 CACACAGAGGTCAAACTGGATC 58.930 50.000 0.00 0.00 38.30 3.36
2085 2388 2.439507 ACACACAGAGGTCAAACTGGAT 59.560 45.455 0.00 0.00 38.30 3.41
2086 2389 1.837439 ACACACAGAGGTCAAACTGGA 59.163 47.619 0.00 0.00 38.30 3.86
2087 2390 1.942657 CACACACAGAGGTCAAACTGG 59.057 52.381 0.00 0.00 38.30 4.00
2088 2391 2.352651 CACACACACAGAGGTCAAACTG 59.647 50.000 0.00 0.00 39.65 3.16
2089 2392 2.027192 ACACACACACAGAGGTCAAACT 60.027 45.455 0.00 0.00 0.00 2.66
2090 2393 2.095853 CACACACACACAGAGGTCAAAC 59.904 50.000 0.00 0.00 0.00 2.93
2091 2394 2.290008 ACACACACACACAGAGGTCAAA 60.290 45.455 0.00 0.00 0.00 2.69
2092 2395 1.277842 ACACACACACACAGAGGTCAA 59.722 47.619 0.00 0.00 0.00 3.18
2093 2396 0.901827 ACACACACACACAGAGGTCA 59.098 50.000 0.00 0.00 0.00 4.02
2094 2397 2.545952 CCTACACACACACACAGAGGTC 60.546 54.545 0.00 0.00 0.00 3.85
2095 2398 1.412710 CCTACACACACACACAGAGGT 59.587 52.381 0.00 0.00 0.00 3.85
2096 2399 1.270305 CCCTACACACACACACAGAGG 60.270 57.143 0.00 0.00 0.00 3.69
2097 2400 1.270305 CCCCTACACACACACACAGAG 60.270 57.143 0.00 0.00 0.00 3.35
2098 2401 0.756294 CCCCTACACACACACACAGA 59.244 55.000 0.00 0.00 0.00 3.41
2099 2402 0.250295 CCCCCTACACACACACACAG 60.250 60.000 0.00 0.00 0.00 3.66
2100 2403 1.833606 CCCCCTACACACACACACA 59.166 57.895 0.00 0.00 0.00 3.72
2101 2404 4.792087 CCCCCTACACACACACAC 57.208 61.111 0.00 0.00 0.00 3.82
2122 2425 0.912006 ACAGAGAGGAAAGAGCCCCC 60.912 60.000 0.00 0.00 0.00 5.40
2123 2426 0.988063 AACAGAGAGGAAAGAGCCCC 59.012 55.000 0.00 0.00 0.00 5.80
2124 2427 1.905894 AGAACAGAGAGGAAAGAGCCC 59.094 52.381 0.00 0.00 0.00 5.19
2125 2428 2.301583 ACAGAACAGAGAGGAAAGAGCC 59.698 50.000 0.00 0.00 0.00 4.70
2126 2429 3.676291 ACAGAACAGAGAGGAAAGAGC 57.324 47.619 0.00 0.00 0.00 4.09
2127 2430 8.231692 TGATATACAGAACAGAGAGGAAAGAG 57.768 38.462 0.00 0.00 0.00 2.85
2192 2752 9.334947 ACTTACGAACTAGTATAGCAGTAATCA 57.665 33.333 0.00 0.00 44.39 2.57
2210 2795 5.918011 GGCATCAACAAAATCAACTTACGAA 59.082 36.000 0.00 0.00 0.00 3.85
2213 2798 5.634859 CAGGGCATCAACAAAATCAACTTAC 59.365 40.000 0.00 0.00 0.00 2.34
2253 2839 7.531716 TGCGGTTTCTAATTATTTGTTACTGG 58.468 34.615 0.00 0.00 0.00 4.00
2312 2898 5.939296 TGCACATCTCAATAACACTGAATCA 59.061 36.000 0.00 0.00 0.00 2.57
2313 2899 6.093219 AGTGCACATCTCAATAACACTGAATC 59.907 38.462 21.04 0.00 35.68 2.52
2366 2952 4.475944 CATGGATTTGGAACGTTTCTCAC 58.524 43.478 8.32 0.00 0.00 3.51
2754 3340 7.065894 CAGCGAGAATATGGTTTAATTCTTCG 58.934 38.462 0.00 0.00 41.40 3.79
2775 3361 4.236147 CTGATAGATCATCCAAGACAGCG 58.764 47.826 0.00 0.00 36.02 5.18
2793 3379 2.089980 GTGCCTGATTGTTCTGCTGAT 58.910 47.619 0.00 0.00 0.00 2.90
2807 3393 6.226787 CCATACTCCTTAATCTTAGTGCCTG 58.773 44.000 0.00 0.00 0.00 4.85
2812 3398 7.293535 AGCAATCCCATACTCCTTAATCTTAGT 59.706 37.037 0.00 0.00 0.00 2.24
3399 3995 2.943199 GCTGATGGTGGAAAGGAGAAGG 60.943 54.545 0.00 0.00 0.00 3.46
3444 4040 1.843851 ACAGGGTGTTGAAGGAACAGA 59.156 47.619 0.00 0.00 45.46 3.41
3555 4152 5.050490 TCAACTAGCTTTGACTGTCTCAAC 58.950 41.667 9.51 0.00 38.70 3.18
3556 4153 5.276461 TCAACTAGCTTTGACTGTCTCAA 57.724 39.130 9.51 1.48 37.08 3.02
3886 4485 6.438741 AGGAACTCTAGATCAGAAACATCACA 59.561 38.462 0.00 0.00 31.12 3.58
4077 4676 2.797177 AGAAGCCAAGGGTCTCATTC 57.203 50.000 0.00 0.00 0.00 2.67
4369 4968 4.942852 AGAAATATCCAGCTCTCGAGTTG 58.057 43.478 13.13 9.51 39.05 3.16
4534 5133 9.920946 TGCACTTATCTCTTAATAAAAGGGATT 57.079 29.630 5.50 0.00 38.38 3.01
4785 5384 9.922305 GTACAATGAGAAACTTGTATCATAAGC 57.078 33.333 0.00 0.00 39.34 3.09
4852 5451 3.364366 CGAGAAACTCACCAAAGCATCAC 60.364 47.826 0.00 0.00 0.00 3.06
4914 5513 8.044908 TGATGGGGTTATAACTAACTTCTGAAC 58.955 37.037 15.05 0.00 37.86 3.18
5102 5705 6.974932 TTAGACTCTAAAGCTGCTTTCATG 57.025 37.500 29.06 20.71 35.21 3.07
5138 5741 4.732065 TCCCAAGGGTACAAACCTTAAAG 58.268 43.478 4.80 0.00 46.25 1.85
5384 5987 3.138283 TCTCAACCTTGACCAGTGGAAAT 59.862 43.478 18.40 0.00 32.90 2.17
5496 6099 6.540205 AGAAATAAACGCGATGGTTTTCTAC 58.460 36.000 15.93 0.00 40.41 2.59
5603 6206 6.768381 GGAAGGAGAAAATATCAGTAAGGTGG 59.232 42.308 0.00 0.00 0.00 4.61
5793 6399 7.168135 GCAAACTGGACAGAAGTTTAAGAAATG 59.832 37.037 6.29 0.00 44.11 2.32
5904 6510 8.442632 TCTGTTCCATGATTCATTCAATAGAC 57.557 34.615 0.00 0.00 38.03 2.59
6297 6919 1.071471 CACAACCGAAGCCACCTCT 59.929 57.895 0.00 0.00 0.00 3.69
6308 6930 1.226746 GGTCACTTCCTTCACAACCG 58.773 55.000 0.00 0.00 0.00 4.44
6441 7096 4.002906 TCTGTTAACAGGACACACATCC 57.997 45.455 30.35 0.00 43.91 3.51
6642 7298 8.816894 GGATACTTCTATTGTGGGATCAAGATA 58.183 37.037 0.00 0.00 0.00 1.98
6846 7502 1.752753 CAAGCATTGTTTTCGTGCGA 58.247 45.000 0.00 0.00 42.34 5.10
6958 7614 2.523015 GCATCGGCAAAAGTCATTCAG 58.477 47.619 0.00 0.00 40.72 3.02
6959 7615 2.634982 GCATCGGCAAAAGTCATTCA 57.365 45.000 0.00 0.00 40.72 2.57
6971 7627 3.211963 GTGGTGGGATGCATCGGC 61.212 66.667 20.15 12.05 41.68 5.54
6972 7628 1.820906 CAGTGGTGGGATGCATCGG 60.821 63.158 20.15 0.00 0.00 4.18
6973 7629 1.078214 ACAGTGGTGGGATGCATCG 60.078 57.895 20.15 6.52 0.00 3.84
6974 7630 2.485677 CACAGTGGTGGGATGCATC 58.514 57.895 18.81 18.81 41.45 3.91
6975 7631 4.749323 CACAGTGGTGGGATGCAT 57.251 55.556 0.00 0.00 41.45 3.96
6984 7640 0.746563 CACCGGACAAACACAGTGGT 60.747 55.000 9.46 0.00 0.00 4.16
6985 7641 2.021722 CACCGGACAAACACAGTGG 58.978 57.895 9.46 0.00 0.00 4.00
6986 7642 1.355210 GCACCGGACAAACACAGTG 59.645 57.895 9.46 0.00 0.00 3.66
6987 7643 1.078072 TGCACCGGACAAACACAGT 60.078 52.632 9.46 0.00 0.00 3.55
6988 7644 0.813610 TCTGCACCGGACAAACACAG 60.814 55.000 9.46 4.62 0.00 3.66
6989 7645 0.393132 TTCTGCACCGGACAAACACA 60.393 50.000 9.46 0.00 0.00 3.72
6990 7646 0.028902 GTTCTGCACCGGACAAACAC 59.971 55.000 9.46 0.00 0.00 3.32
6991 7647 0.107410 AGTTCTGCACCGGACAAACA 60.107 50.000 9.46 0.00 0.00 2.83
6992 7648 0.307760 CAGTTCTGCACCGGACAAAC 59.692 55.000 9.46 12.51 0.00 2.93
6993 7649 0.179234 TCAGTTCTGCACCGGACAAA 59.821 50.000 9.46 0.91 0.00 2.83
6994 7650 0.179234 TTCAGTTCTGCACCGGACAA 59.821 50.000 9.46 0.00 0.00 3.18
6995 7651 0.396435 ATTCAGTTCTGCACCGGACA 59.604 50.000 9.46 4.86 0.00 4.02
6996 7652 0.798776 CATTCAGTTCTGCACCGGAC 59.201 55.000 9.46 0.00 0.00 4.79
6997 7653 0.684535 TCATTCAGTTCTGCACCGGA 59.315 50.000 9.46 0.00 0.00 5.14
6998 7654 0.798776 GTCATTCAGTTCTGCACCGG 59.201 55.000 0.00 0.00 0.00 5.28
6999 7655 1.800805 AGTCATTCAGTTCTGCACCG 58.199 50.000 0.00 0.00 0.00 4.94
7000 7656 3.141398 TGAAGTCATTCAGTTCTGCACC 58.859 45.455 0.00 0.00 40.54 5.01
7001 7657 4.320057 CCTTGAAGTCATTCAGTTCTGCAC 60.320 45.833 0.00 0.00 45.89 4.57
7002 7658 3.817084 CCTTGAAGTCATTCAGTTCTGCA 59.183 43.478 0.00 0.00 45.89 4.41
7003 7659 3.190118 CCCTTGAAGTCATTCAGTTCTGC 59.810 47.826 0.00 0.00 45.89 4.26
7004 7660 3.755378 CCCCTTGAAGTCATTCAGTTCTG 59.245 47.826 0.00 0.00 45.89 3.02
7005 7661 3.245052 CCCCCTTGAAGTCATTCAGTTCT 60.245 47.826 0.00 0.00 45.89 3.01
7006 7662 3.084786 CCCCCTTGAAGTCATTCAGTTC 58.915 50.000 0.00 0.00 45.89 3.01
7007 7663 2.447047 ACCCCCTTGAAGTCATTCAGTT 59.553 45.455 0.00 0.00 45.89 3.16
7008 7664 2.040412 GACCCCCTTGAAGTCATTCAGT 59.960 50.000 0.00 0.00 45.89 3.41
7026 7682 0.250513 AGTTGAGGCCGAATCAGACC 59.749 55.000 0.00 0.00 0.00 3.85
7045 7701 0.676184 GCTAGGACCATGCGAGATGA 59.324 55.000 0.00 0.00 0.00 2.92
7071 7761 1.153369 TGCTTCAGATGCTACGGCC 60.153 57.895 9.56 0.00 37.74 6.13
7126 7816 4.736759 GCCGATAATCAAAGACGAGAAGGA 60.737 45.833 0.00 0.00 0.00 3.36
7138 7828 1.295792 GAGCAACGGCCGATAATCAA 58.704 50.000 35.90 0.00 42.56 2.57
7163 7855 5.048782 ACGTTGCTTTTTATCAAGATGCAGA 60.049 36.000 0.00 0.00 0.00 4.26
7184 7876 9.628746 AAAGTTTGTTAAAGTAAATGTTGACGT 57.371 25.926 0.00 0.00 0.00 4.34
7250 7942 1.382695 ACACCCGAGGACCCCATAG 60.383 63.158 0.00 0.00 0.00 2.23
7252 7944 2.687566 GACACCCGAGGACCCCAT 60.688 66.667 0.00 0.00 0.00 4.00
7263 7955 1.080025 GTACACAGCTCGGACACCC 60.080 63.158 0.00 0.00 0.00 4.61
7264 7956 1.080025 GGTACACAGCTCGGACACC 60.080 63.158 0.00 0.00 0.00 4.16
7265 7957 1.663739 TGGTACACAGCTCGGACAC 59.336 57.895 0.00 0.00 0.00 3.67
7266 7958 4.184439 TGGTACACAGCTCGGACA 57.816 55.556 0.00 0.00 0.00 4.02
7278 7970 0.180406 ATCAGTTCGGCCCATGGTAC 59.820 55.000 11.73 1.78 0.00 3.34
7279 7971 0.180171 CATCAGTTCGGCCCATGGTA 59.820 55.000 11.73 0.00 0.00 3.25
7280 7972 1.077501 CATCAGTTCGGCCCATGGT 60.078 57.895 11.73 0.00 0.00 3.55
7281 7973 1.825191 CCATCAGTTCGGCCCATGG 60.825 63.158 4.14 4.14 0.00 3.66
7282 7974 1.825191 CCCATCAGTTCGGCCCATG 60.825 63.158 0.00 0.00 0.00 3.66
7283 7975 2.270874 GACCCATCAGTTCGGCCCAT 62.271 60.000 0.00 0.00 0.00 4.00
7284 7976 2.933287 ACCCATCAGTTCGGCCCA 60.933 61.111 0.00 0.00 0.00 5.36
7285 7977 2.124695 GACCCATCAGTTCGGCCC 60.125 66.667 0.00 0.00 0.00 5.80
7286 7978 1.097547 CATGACCCATCAGTTCGGCC 61.098 60.000 0.00 0.00 38.57 6.13
7287 7979 0.107703 TCATGACCCATCAGTTCGGC 60.108 55.000 0.00 0.00 38.57 5.54
7288 7980 2.093500 TCTTCATGACCCATCAGTTCGG 60.093 50.000 0.00 0.00 38.57 4.30
7289 7981 3.251479 TCTTCATGACCCATCAGTTCG 57.749 47.619 0.00 0.00 38.57 3.95
7290 7982 5.674525 TGTATCTTCATGACCCATCAGTTC 58.325 41.667 0.00 0.00 38.57 3.01
7291 7983 5.698741 TGTATCTTCATGACCCATCAGTT 57.301 39.130 0.00 0.00 38.57 3.16
7292 7984 5.426509 TCTTGTATCTTCATGACCCATCAGT 59.573 40.000 0.00 0.00 38.57 3.41
7293 7985 5.922053 TCTTGTATCTTCATGACCCATCAG 58.078 41.667 0.00 0.00 38.57 2.90
7294 7986 5.955961 TCTTGTATCTTCATGACCCATCA 57.044 39.130 0.00 0.00 39.83 3.07
7295 7987 7.901029 TCTATCTTGTATCTTCATGACCCATC 58.099 38.462 0.00 0.00 0.00 3.51
7296 7988 7.862274 TCTATCTTGTATCTTCATGACCCAT 57.138 36.000 0.00 0.00 0.00 4.00
7297 7989 7.565029 TCTTCTATCTTGTATCTTCATGACCCA 59.435 37.037 0.00 0.00 0.00 4.51
7298 7990 7.870445 GTCTTCTATCTTGTATCTTCATGACCC 59.130 40.741 0.00 0.00 0.00 4.46
7299 7991 7.870445 GGTCTTCTATCTTGTATCTTCATGACC 59.130 40.741 0.00 0.00 0.00 4.02
7300 7992 8.637986 AGGTCTTCTATCTTGTATCTTCATGAC 58.362 37.037 0.00 0.00 0.00 3.06
7301 7993 8.774546 AGGTCTTCTATCTTGTATCTTCATGA 57.225 34.615 0.00 0.00 0.00 3.07
7302 7994 9.474920 GAAGGTCTTCTATCTTGTATCTTCATG 57.525 37.037 3.65 0.00 36.69 3.07
7303 7995 8.646900 GGAAGGTCTTCTATCTTGTATCTTCAT 58.353 37.037 10.13 0.00 39.45 2.57
7304 7996 7.070074 GGGAAGGTCTTCTATCTTGTATCTTCA 59.930 40.741 10.13 0.00 39.45 3.02
7305 7997 7.438564 GGGAAGGTCTTCTATCTTGTATCTTC 58.561 42.308 10.13 0.00 39.45 2.87
7306 7998 6.327887 GGGGAAGGTCTTCTATCTTGTATCTT 59.672 42.308 10.13 0.00 39.45 2.40
7307 7999 5.841783 GGGGAAGGTCTTCTATCTTGTATCT 59.158 44.000 10.13 0.00 39.45 1.98
7308 8000 5.012251 GGGGGAAGGTCTTCTATCTTGTATC 59.988 48.000 10.13 0.00 39.45 2.24
7309 8001 4.908481 GGGGGAAGGTCTTCTATCTTGTAT 59.092 45.833 10.13 0.00 39.45 2.29
7310 8002 4.265124 TGGGGGAAGGTCTTCTATCTTGTA 60.265 45.833 10.13 0.00 39.45 2.41
7311 8003 3.116174 GGGGGAAGGTCTTCTATCTTGT 58.884 50.000 10.13 0.00 39.45 3.16
7312 8004 3.115390 TGGGGGAAGGTCTTCTATCTTG 58.885 50.000 10.13 0.00 39.45 3.02
7313 8005 3.508952 TGGGGGAAGGTCTTCTATCTT 57.491 47.619 10.13 0.00 39.45 2.40
7314 8006 3.311702 ACATGGGGGAAGGTCTTCTATCT 60.312 47.826 10.13 0.00 39.45 1.98
7315 8007 3.049344 ACATGGGGGAAGGTCTTCTATC 58.951 50.000 10.13 2.05 39.45 2.08
7316 8008 3.049344 GACATGGGGGAAGGTCTTCTAT 58.951 50.000 10.13 0.00 39.45 1.98
7317 8009 2.478292 GACATGGGGGAAGGTCTTCTA 58.522 52.381 10.13 0.00 39.45 2.10
7318 8010 1.290134 GACATGGGGGAAGGTCTTCT 58.710 55.000 10.13 0.00 39.45 2.85
7319 8011 0.256177 GGACATGGGGGAAGGTCTTC 59.744 60.000 0.00 2.29 38.80 2.87
7320 8012 1.562672 CGGACATGGGGGAAGGTCTT 61.563 60.000 0.00 0.00 0.00 3.01
7321 8013 1.995626 CGGACATGGGGGAAGGTCT 60.996 63.158 0.00 0.00 0.00 3.85
7322 8014 2.590092 CGGACATGGGGGAAGGTC 59.410 66.667 0.00 0.00 0.00 3.85
7323 8015 3.015145 CCGGACATGGGGGAAGGT 61.015 66.667 0.00 0.00 0.00 3.50
7336 8028 2.396651 AAAGGAGAGTCCCACCCGGA 62.397 60.000 0.73 0.00 37.19 5.14
7337 8029 1.918800 AAAGGAGAGTCCCACCCGG 60.919 63.158 0.00 0.00 37.19 5.73
7338 8030 1.296715 CAAAGGAGAGTCCCACCCG 59.703 63.158 1.17 0.00 37.19 5.28
7339 8031 1.002011 GCAAAGGAGAGTCCCACCC 60.002 63.158 1.17 0.00 37.19 4.61
7340 8032 1.376037 CGCAAAGGAGAGTCCCACC 60.376 63.158 1.17 0.00 37.19 4.61
7341 8033 0.951040 CACGCAAAGGAGAGTCCCAC 60.951 60.000 1.17 0.00 37.19 4.61
7342 8034 1.371183 CACGCAAAGGAGAGTCCCA 59.629 57.895 1.17 0.00 37.19 4.37
7343 8035 1.376037 CCACGCAAAGGAGAGTCCC 60.376 63.158 0.00 0.00 37.19 4.46
7344 8036 0.250513 ATCCACGCAAAGGAGAGTCC 59.749 55.000 0.00 0.00 38.83 3.85
7345 8037 1.363744 CATCCACGCAAAGGAGAGTC 58.636 55.000 0.00 0.00 38.83 3.36
7346 8038 0.036010 CCATCCACGCAAAGGAGAGT 60.036 55.000 0.00 0.00 38.83 3.24
7347 8039 1.372087 GCCATCCACGCAAAGGAGAG 61.372 60.000 0.00 0.00 38.83 3.20
7348 8040 1.377202 GCCATCCACGCAAAGGAGA 60.377 57.895 0.00 0.00 38.83 3.71
7349 8041 1.243342 TTGCCATCCACGCAAAGGAG 61.243 55.000 0.00 0.00 43.00 3.69
7350 8042 1.228398 TTGCCATCCACGCAAAGGA 60.228 52.632 0.00 0.00 43.00 3.36
7351 8043 1.213537 CTTGCCATCCACGCAAAGG 59.786 57.895 0.00 0.00 45.11 3.11
7352 8044 1.444895 GCTTGCCATCCACGCAAAG 60.445 57.895 0.00 0.00 45.11 2.77
7353 8045 1.462731 AAGCTTGCCATCCACGCAAA 61.463 50.000 0.00 0.00 45.11 3.68
7354 8046 0.607762 TAAGCTTGCCATCCACGCAA 60.608 50.000 9.86 0.00 43.71 4.85
7355 8047 0.607762 TTAAGCTTGCCATCCACGCA 60.608 50.000 9.86 0.00 40.87 5.24
7356 8048 0.179163 GTTAAGCTTGCCATCCACGC 60.179 55.000 9.86 0.00 38.87 5.34
7357 8049 0.096976 CGTTAAGCTTGCCATCCACG 59.903 55.000 9.86 2.45 0.00 4.94
7358 8050 0.179163 GCGTTAAGCTTGCCATCCAC 60.179 55.000 9.86 0.00 44.04 4.02
7359 8051 2.179764 GCGTTAAGCTTGCCATCCA 58.820 52.632 9.86 0.00 44.04 3.41
7370 8062 2.613691 ACTACACATTCGGGCGTTAAG 58.386 47.619 0.00 0.00 0.00 1.85
7371 8063 2.747396 ACTACACATTCGGGCGTTAA 57.253 45.000 0.00 0.00 0.00 2.01
7372 8064 2.747396 AACTACACATTCGGGCGTTA 57.253 45.000 0.00 0.00 0.00 3.18
7373 8065 1.802365 GAAACTACACATTCGGGCGTT 59.198 47.619 0.00 0.00 0.00 4.84
7374 8066 1.435577 GAAACTACACATTCGGGCGT 58.564 50.000 0.00 0.00 0.00 5.68
7375 8067 0.725117 GGAAACTACACATTCGGGCG 59.275 55.000 0.00 0.00 0.00 6.13
7376 8068 2.109425 AGGAAACTACACATTCGGGC 57.891 50.000 0.00 0.00 40.61 6.13
7377 8069 4.324267 AGAAAGGAAACTACACATTCGGG 58.676 43.478 0.00 0.00 42.68 5.14
7378 8070 5.120830 CAGAGAAAGGAAACTACACATTCGG 59.879 44.000 0.00 0.00 42.68 4.30
7379 8071 5.696724 ACAGAGAAAGGAAACTACACATTCG 59.303 40.000 0.00 0.00 42.68 3.34
7380 8072 8.603242 TTACAGAGAAAGGAAACTACACATTC 57.397 34.615 0.00 0.00 42.68 2.67
7381 8073 8.837389 GTTTACAGAGAAAGGAAACTACACATT 58.163 33.333 0.00 0.00 42.68 2.71
7382 8074 7.444487 GGTTTACAGAGAAAGGAAACTACACAT 59.556 37.037 0.00 0.00 42.68 3.21
7383 8075 6.764560 GGTTTACAGAGAAAGGAAACTACACA 59.235 38.462 0.00 0.00 42.68 3.72
7384 8076 6.073927 CGGTTTACAGAGAAAGGAAACTACAC 60.074 42.308 0.00 0.00 42.68 2.90
7385 8077 5.987347 CGGTTTACAGAGAAAGGAAACTACA 59.013 40.000 0.00 0.00 42.68 2.74
7386 8078 6.145209 GTCGGTTTACAGAGAAAGGAAACTAC 59.855 42.308 0.00 0.00 42.68 2.73
7387 8079 6.041296 AGTCGGTTTACAGAGAAAGGAAACTA 59.959 38.462 0.00 0.00 42.68 2.24
7389 8081 5.055144 AGTCGGTTTACAGAGAAAGGAAAC 58.945 41.667 0.00 0.00 0.00 2.78
7390 8082 5.286267 AGTCGGTTTACAGAGAAAGGAAA 57.714 39.130 0.00 0.00 0.00 3.13
7391 8083 4.950205 AGTCGGTTTACAGAGAAAGGAA 57.050 40.909 0.00 0.00 0.00 3.36
7392 8084 5.479375 ACATAGTCGGTTTACAGAGAAAGGA 59.521 40.000 0.00 0.00 0.00 3.36
7393 8085 5.721232 ACATAGTCGGTTTACAGAGAAAGG 58.279 41.667 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.