Multiple sequence alignment - TraesCS2A01G287800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G287800 chr2A 100.000 3738 0 0 1 3738 491476940 491480677 0.000000e+00 6903
1 TraesCS2A01G287800 chr2A 95.480 354 16 0 1 354 80823135 80823488 1.950000e-157 566
2 TraesCS2A01G287800 chr2A 92.838 377 21 5 403 774 472463479 472463104 3.280000e-150 542
3 TraesCS2A01G287800 chr2A 92.241 116 8 1 2979 3093 491479802 491479917 2.990000e-36 163
4 TraesCS2A01G287800 chr2A 92.241 116 8 1 2863 2978 491479918 491480032 2.990000e-36 163
5 TraesCS2A01G287800 chr2D 95.819 1746 63 8 772 2515 364921490 364923227 0.000000e+00 2811
6 TraesCS2A01G287800 chr2D 91.574 1163 59 12 2546 3702 364923712 364924841 0.000000e+00 1568
7 TraesCS2A01G287800 chr2D 91.117 394 25 7 387 774 383891248 383890859 3.310000e-145 525
8 TraesCS2A01G287800 chr2D 93.694 111 7 0 2863 2973 364924137 364924247 2.310000e-37 167
9 TraesCS2A01G287800 chr2B 94.513 1786 77 12 772 2546 432973270 432975045 0.000000e+00 2736
10 TraesCS2A01G287800 chr2B 93.049 820 47 5 2546 3363 432975510 432976321 0.000000e+00 1190
11 TraesCS2A01G287800 chr2B 96.954 197 6 0 3375 3571 432976379 432976575 7.740000e-87 331
12 TraesCS2A01G287800 chr2B 90.323 155 12 1 3573 3724 432977208 432977362 2.280000e-47 200
13 TraesCS2A01G287800 chr3B 92.680 847 59 3 1701 2546 507488733 507487889 0.000000e+00 1218
14 TraesCS2A01G287800 chr3B 91.353 266 19 4 2546 2811 507487842 507487581 9.870000e-96 361
15 TraesCS2A01G287800 chr7D 92.680 847 51 5 1701 2546 530738892 530738056 0.000000e+00 1210
16 TraesCS2A01G287800 chr7D 91.603 393 25 7 388 774 138463583 138463973 1.530000e-148 536
17 TraesCS2A01G287800 chr7D 91.560 391 23 8 388 774 373297154 373296770 7.110000e-147 531
18 TraesCS2A01G287800 chr7D 94.924 197 9 1 2546 2742 530738009 530737814 1.300000e-79 307
19 TraesCS2A01G287800 chr5A 92.090 847 57 4 1701 2546 470948567 470949404 0.000000e+00 1184
20 TraesCS2A01G287800 chr5A 94.924 197 9 1 2546 2742 470949451 470949646 1.300000e-79 307
21 TraesCS2A01G287800 chr3A 92.090 847 57 4 1701 2546 662566686 662565849 0.000000e+00 1184
22 TraesCS2A01G287800 chr3A 91.617 847 61 4 1701 2546 703821741 703822578 0.000000e+00 1162
23 TraesCS2A01G287800 chr3A 94.416 197 9 2 2546 2742 703822625 703822819 6.070000e-78 302
24 TraesCS2A01G287800 chr3A 93.939 198 10 2 2546 2742 662565802 662565606 7.850000e-77 298
25 TraesCS2A01G287800 chr4A 93.333 390 22 4 387 774 535830335 535830722 1.160000e-159 573
26 TraesCS2A01G287800 chrUn 95.493 355 16 0 1 355 99066710 99066356 5.420000e-158 568
27 TraesCS2A01G287800 chr4D 95.480 354 16 0 1 354 484717335 484717688 1.950000e-157 566
28 TraesCS2A01G287800 chr4D 95.480 354 15 1 1 354 127229500 127229148 7.010000e-157 564
29 TraesCS2A01G287800 chr1D 95.480 354 16 0 1 354 439766521 439766168 1.950000e-157 566
30 TraesCS2A01G287800 chr1D 91.414 396 23 10 387 774 257178372 257177980 1.980000e-147 532
31 TraesCS2A01G287800 chr5D 95.480 354 15 1 1 354 268876370 268876018 7.010000e-157 564
32 TraesCS2A01G287800 chr5D 95.211 355 17 0 1 355 661117 661471 2.520000e-156 562
33 TraesCS2A01G287800 chr5D 90.909 396 28 7 387 774 561778547 561778942 3.310000e-145 525
34 TraesCS2A01G287800 chr1B 95.480 354 15 1 1 354 280083842 280084194 7.010000e-157 564
35 TraesCS2A01G287800 chr6D 95.198 354 17 0 1 354 109224280 109224633 9.070000e-156 560
36 TraesCS2A01G287800 chr6D 91.560 391 26 6 388 774 47588561 47588948 1.980000e-147 532
37 TraesCS2A01G287800 chr3D 91.371 394 24 7 386 774 266540098 266539710 7.110000e-147 531


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G287800 chr2A 491476940 491480677 3737 False 2409.666667 6903 94.827333 1 3738 3 chr2A.!!$F2 3737
1 TraesCS2A01G287800 chr2D 364921490 364924841 3351 False 1515.333333 2811 93.695667 772 3702 3 chr2D.!!$F1 2930
2 TraesCS2A01G287800 chr2B 432973270 432977362 4092 False 1114.250000 2736 93.709750 772 3724 4 chr2B.!!$F1 2952
3 TraesCS2A01G287800 chr3B 507487581 507488733 1152 True 789.500000 1218 92.016500 1701 2811 2 chr3B.!!$R1 1110
4 TraesCS2A01G287800 chr7D 530737814 530738892 1078 True 758.500000 1210 93.802000 1701 2742 2 chr7D.!!$R2 1041
5 TraesCS2A01G287800 chr5A 470948567 470949646 1079 False 745.500000 1184 93.507000 1701 2742 2 chr5A.!!$F1 1041
6 TraesCS2A01G287800 chr3A 662565606 662566686 1080 True 741.000000 1184 93.014500 1701 2742 2 chr3A.!!$R1 1041
7 TraesCS2A01G287800 chr3A 703821741 703822819 1078 False 732.000000 1162 93.016500 1701 2742 2 chr3A.!!$F1 1041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.039798 TATGGGTCGCGCTATTCGTC 60.040 55.0 5.56 0.0 41.07 4.20 F
1334 1343 0.673644 GCCTTCAAGAGCGCAGGTTA 60.674 55.0 11.47 0.0 39.88 2.85 F
2017 2027 2.025981 CACTGAAGATCACCCAATCCCA 60.026 50.0 0.00 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1468 1477 0.865769 GCCACTAGACAACCAACACG 59.134 55.0 0.0 0.0 0.0 4.49 R
2578 3477 0.894835 TGCAATAGTCAGCGTGAGGA 59.105 50.0 0.0 0.0 0.0 3.71 R
3166 4066 1.177401 GTTTTCCCTGTGATCCCAGC 58.823 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.140747 GGTATCCGAGAGTTGCATAATCT 57.859 43.478 0.00 0.00 0.00 2.40
43 44 5.542779 GGTATCCGAGAGTTGCATAATCTT 58.457 41.667 0.00 0.00 0.00 2.40
44 45 6.688578 GGTATCCGAGAGTTGCATAATCTTA 58.311 40.000 0.00 0.00 0.00 2.10
45 46 7.324178 GGTATCCGAGAGTTGCATAATCTTAT 58.676 38.462 0.00 0.00 0.00 1.73
46 47 8.467598 GGTATCCGAGAGTTGCATAATCTTATA 58.532 37.037 0.00 0.00 0.00 0.98
47 48 9.509855 GTATCCGAGAGTTGCATAATCTTATAG 57.490 37.037 0.00 0.00 0.00 1.31
48 49 7.526142 TCCGAGAGTTGCATAATCTTATAGT 57.474 36.000 0.00 0.00 0.00 2.12
49 50 7.594714 TCCGAGAGTTGCATAATCTTATAGTC 58.405 38.462 0.00 0.00 0.00 2.59
50 51 7.230712 TCCGAGAGTTGCATAATCTTATAGTCA 59.769 37.037 0.00 0.00 0.00 3.41
51 52 7.867909 CCGAGAGTTGCATAATCTTATAGTCAA 59.132 37.037 0.00 0.00 0.00 3.18
52 53 9.249457 CGAGAGTTGCATAATCTTATAGTCAAA 57.751 33.333 0.00 0.00 0.00 2.69
85 86 8.777413 TGTATATGACATGAAGAAAGCAATAGC 58.223 33.333 0.00 0.00 35.11 2.97
86 87 7.812690 ATATGACATGAAGAAAGCAATAGCA 57.187 32.000 0.00 0.00 45.49 3.49
87 88 5.963176 TGACATGAAGAAAGCAATAGCAA 57.037 34.783 0.00 0.00 45.49 3.91
88 89 6.519679 TGACATGAAGAAAGCAATAGCAAT 57.480 33.333 0.00 0.00 45.49 3.56
89 90 7.628769 TGACATGAAGAAAGCAATAGCAATA 57.371 32.000 0.00 0.00 45.49 1.90
90 91 8.054152 TGACATGAAGAAAGCAATAGCAATAA 57.946 30.769 0.00 0.00 45.49 1.40
91 92 8.522003 TGACATGAAGAAAGCAATAGCAATAAA 58.478 29.630 0.00 0.00 45.49 1.40
92 93 9.357652 GACATGAAGAAAGCAATAGCAATAAAA 57.642 29.630 0.00 0.00 45.49 1.52
93 94 9.143631 ACATGAAGAAAGCAATAGCAATAAAAC 57.856 29.630 0.00 0.00 45.49 2.43
94 95 9.362539 CATGAAGAAAGCAATAGCAATAAAACT 57.637 29.630 0.00 0.00 45.49 2.66
95 96 9.933723 ATGAAGAAAGCAATAGCAATAAAACTT 57.066 25.926 0.00 0.00 45.49 2.66
124 125 9.458727 AGATCATTATGCTAAGGTAATGAATGG 57.541 33.333 10.67 0.00 45.29 3.16
125 126 8.585471 ATCATTATGCTAAGGTAATGAATGGG 57.415 34.615 10.67 0.00 45.29 4.00
126 127 7.526041 TCATTATGCTAAGGTAATGAATGGGT 58.474 34.615 5.58 0.00 41.69 4.51
127 128 7.665559 TCATTATGCTAAGGTAATGAATGGGTC 59.334 37.037 5.58 0.00 41.69 4.46
128 129 5.653255 ATGCTAAGGTAATGAATGGGTCT 57.347 39.130 0.00 0.00 0.00 3.85
129 130 5.450818 TGCTAAGGTAATGAATGGGTCTT 57.549 39.130 0.00 0.00 0.00 3.01
130 131 5.192927 TGCTAAGGTAATGAATGGGTCTTG 58.807 41.667 0.00 0.00 0.00 3.02
131 132 5.193679 GCTAAGGTAATGAATGGGTCTTGT 58.806 41.667 0.00 0.00 0.00 3.16
132 133 5.297029 GCTAAGGTAATGAATGGGTCTTGTC 59.703 44.000 0.00 0.00 0.00 3.18
133 134 4.236527 AGGTAATGAATGGGTCTTGTCC 57.763 45.455 0.00 0.00 0.00 4.02
134 135 3.591527 AGGTAATGAATGGGTCTTGTCCA 59.408 43.478 0.00 0.00 38.82 4.02
135 136 4.230502 AGGTAATGAATGGGTCTTGTCCAT 59.769 41.667 0.00 0.00 46.11 3.41
136 137 4.580580 GGTAATGAATGGGTCTTGTCCATC 59.419 45.833 0.00 0.00 43.61 3.51
137 138 2.401583 TGAATGGGTCTTGTCCATCG 57.598 50.000 0.00 0.00 43.61 3.84
138 139 1.017387 GAATGGGTCTTGTCCATCGC 58.983 55.000 0.00 0.00 43.61 4.58
139 140 0.327924 AATGGGTCTTGTCCATCGCA 59.672 50.000 0.00 0.00 43.61 5.10
140 141 0.392998 ATGGGTCTTGTCCATCGCAC 60.393 55.000 0.00 0.00 40.74 5.34
141 142 1.745489 GGGTCTTGTCCATCGCACC 60.745 63.158 0.00 0.00 0.00 5.01
142 143 1.003839 GGTCTTGTCCATCGCACCA 60.004 57.895 0.00 0.00 0.00 4.17
143 144 0.392998 GGTCTTGTCCATCGCACCAT 60.393 55.000 0.00 0.00 0.00 3.55
144 145 1.453155 GTCTTGTCCATCGCACCATT 58.547 50.000 0.00 0.00 0.00 3.16
145 146 1.398390 GTCTTGTCCATCGCACCATTC 59.602 52.381 0.00 0.00 0.00 2.67
146 147 1.278985 TCTTGTCCATCGCACCATTCT 59.721 47.619 0.00 0.00 0.00 2.40
147 148 1.667724 CTTGTCCATCGCACCATTCTC 59.332 52.381 0.00 0.00 0.00 2.87
148 149 0.107703 TGTCCATCGCACCATTCTCC 60.108 55.000 0.00 0.00 0.00 3.71
149 150 0.179000 GTCCATCGCACCATTCTCCT 59.821 55.000 0.00 0.00 0.00 3.69
150 151 1.412710 GTCCATCGCACCATTCTCCTA 59.587 52.381 0.00 0.00 0.00 2.94
151 152 2.115427 TCCATCGCACCATTCTCCTAA 58.885 47.619 0.00 0.00 0.00 2.69
152 153 2.705658 TCCATCGCACCATTCTCCTAAT 59.294 45.455 0.00 0.00 0.00 1.73
153 154 2.810274 CCATCGCACCATTCTCCTAATG 59.190 50.000 0.00 0.00 0.00 1.90
154 155 3.494924 CCATCGCACCATTCTCCTAATGA 60.495 47.826 0.00 0.00 0.00 2.57
155 156 4.321718 CATCGCACCATTCTCCTAATGAT 58.678 43.478 0.00 0.00 0.00 2.45
156 157 3.732212 TCGCACCATTCTCCTAATGATG 58.268 45.455 0.00 0.00 0.00 3.07
157 158 3.134623 TCGCACCATTCTCCTAATGATGT 59.865 43.478 0.00 0.00 0.00 3.06
158 159 3.249320 CGCACCATTCTCCTAATGATGTG 59.751 47.826 0.00 0.00 0.00 3.21
159 160 4.454678 GCACCATTCTCCTAATGATGTGA 58.545 43.478 9.74 0.00 0.00 3.58
160 161 5.068636 GCACCATTCTCCTAATGATGTGAT 58.931 41.667 9.74 0.00 0.00 3.06
161 162 5.180868 GCACCATTCTCCTAATGATGTGATC 59.819 44.000 9.74 0.00 0.00 2.92
162 163 5.704515 CACCATTCTCCTAATGATGTGATCC 59.295 44.000 0.00 0.00 0.00 3.36
163 164 5.222007 ACCATTCTCCTAATGATGTGATCCC 60.222 44.000 0.00 0.00 0.00 3.85
164 165 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
165 166 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
166 167 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
167 168 4.039245 TCTCCTAATGATGTGATCCCGTTC 59.961 45.833 0.00 0.00 0.00 3.95
168 169 3.709141 TCCTAATGATGTGATCCCGTTCA 59.291 43.478 0.00 0.00 0.00 3.18
169 170 4.347876 TCCTAATGATGTGATCCCGTTCAT 59.652 41.667 0.00 0.00 0.00 2.57
170 171 4.692625 CCTAATGATGTGATCCCGTTCATC 59.307 45.833 0.00 0.00 37.68 2.92
171 172 3.843893 ATGATGTGATCCCGTTCATCA 57.156 42.857 8.70 8.70 46.43 3.07
172 173 3.625649 TGATGTGATCCCGTTCATCAA 57.374 42.857 0.00 0.00 42.01 2.57
173 174 3.949132 TGATGTGATCCCGTTCATCAAA 58.051 40.909 0.00 0.00 42.01 2.69
174 175 4.525996 TGATGTGATCCCGTTCATCAAAT 58.474 39.130 0.00 0.00 42.01 2.32
175 176 4.949238 TGATGTGATCCCGTTCATCAAATT 59.051 37.500 0.00 0.00 42.01 1.82
176 177 6.118852 TGATGTGATCCCGTTCATCAAATTA 58.881 36.000 0.00 0.00 42.01 1.40
177 178 5.811399 TGTGATCCCGTTCATCAAATTAC 57.189 39.130 0.00 0.00 31.98 1.89
178 179 5.249420 TGTGATCCCGTTCATCAAATTACA 58.751 37.500 0.00 0.00 31.98 2.41
179 180 5.707764 TGTGATCCCGTTCATCAAATTACAA 59.292 36.000 0.00 0.00 31.98 2.41
180 181 6.027749 GTGATCCCGTTCATCAAATTACAAC 58.972 40.000 0.00 0.00 31.98 3.32
181 182 5.707764 TGATCCCGTTCATCAAATTACAACA 59.292 36.000 0.00 0.00 0.00 3.33
182 183 5.365403 TCCCGTTCATCAAATTACAACAC 57.635 39.130 0.00 0.00 0.00 3.32
183 184 4.822350 TCCCGTTCATCAAATTACAACACA 59.178 37.500 0.00 0.00 0.00 3.72
184 185 5.475220 TCCCGTTCATCAAATTACAACACAT 59.525 36.000 0.00 0.00 0.00 3.21
185 186 5.572511 CCCGTTCATCAAATTACAACACATG 59.427 40.000 0.00 0.00 0.00 3.21
186 187 6.148948 CCGTTCATCAAATTACAACACATGT 58.851 36.000 0.00 0.00 46.36 3.21
187 188 6.305399 CCGTTCATCAAATTACAACACATGTC 59.695 38.462 0.00 0.00 42.70 3.06
188 189 7.077605 CGTTCATCAAATTACAACACATGTCT 58.922 34.615 0.00 0.00 42.70 3.41
189 190 8.227119 CGTTCATCAAATTACAACACATGTCTA 58.773 33.333 0.00 0.00 42.70 2.59
192 193 8.676401 TCATCAAATTACAACACATGTCTATGG 58.324 33.333 0.00 0.00 42.70 2.74
193 194 7.994425 TCAAATTACAACACATGTCTATGGT 57.006 32.000 0.00 0.00 42.70 3.55
194 195 8.402798 TCAAATTACAACACATGTCTATGGTT 57.597 30.769 0.00 0.00 42.70 3.67
195 196 9.508642 TCAAATTACAACACATGTCTATGGTTA 57.491 29.630 0.00 0.00 42.70 2.85
196 197 9.773328 CAAATTACAACACATGTCTATGGTTAG 57.227 33.333 0.00 0.00 42.70 2.34
197 198 8.506168 AATTACAACACATGTCTATGGTTAGG 57.494 34.615 0.00 0.00 42.70 2.69
198 199 5.755409 ACAACACATGTCTATGGTTAGGA 57.245 39.130 0.00 0.00 37.96 2.94
199 200 6.121776 ACAACACATGTCTATGGTTAGGAA 57.878 37.500 0.00 0.00 37.96 3.36
200 201 6.539173 ACAACACATGTCTATGGTTAGGAAA 58.461 36.000 0.00 0.00 37.96 3.13
201 202 6.430000 ACAACACATGTCTATGGTTAGGAAAC 59.570 38.462 0.00 0.00 37.96 2.78
202 203 6.374417 ACACATGTCTATGGTTAGGAAACT 57.626 37.500 0.00 0.00 40.79 2.66
203 204 6.779860 ACACATGTCTATGGTTAGGAAACTT 58.220 36.000 0.00 0.00 39.25 2.66
204 205 7.913789 ACACATGTCTATGGTTAGGAAACTTA 58.086 34.615 0.00 0.00 39.25 2.24
205 206 8.380099 ACACATGTCTATGGTTAGGAAACTTAA 58.620 33.333 0.00 0.00 39.25 1.85
206 207 8.665685 CACATGTCTATGGTTAGGAAACTTAAC 58.334 37.037 0.00 0.00 39.25 2.01
207 208 7.827729 ACATGTCTATGGTTAGGAAACTTAACC 59.172 37.037 13.40 13.40 41.02 2.85
215 216 8.307582 TGGTTAGGAAACTTAACCATTTTTGA 57.692 30.769 17.28 0.00 43.20 2.69
216 217 8.929487 TGGTTAGGAAACTTAACCATTTTTGAT 58.071 29.630 17.28 0.00 43.20 2.57
217 218 9.772973 GGTTAGGAAACTTAACCATTTTTGATT 57.227 29.630 14.78 0.00 43.67 2.57
221 222 9.471084 AGGAAACTTAACCATTTTTGATTAACG 57.529 29.630 0.00 0.00 37.44 3.18
222 223 9.465985 GGAAACTTAACCATTTTTGATTAACGA 57.534 29.630 0.00 0.00 0.00 3.85
224 225 8.515473 AACTTAACCATTTTTGATTAACGAGC 57.485 30.769 0.00 0.00 0.00 5.03
225 226 7.882179 ACTTAACCATTTTTGATTAACGAGCT 58.118 30.769 0.00 0.00 0.00 4.09
226 227 9.005777 ACTTAACCATTTTTGATTAACGAGCTA 57.994 29.630 0.00 0.00 0.00 3.32
227 228 9.490663 CTTAACCATTTTTGATTAACGAGCTAG 57.509 33.333 0.00 0.00 0.00 3.42
228 229 7.448748 AACCATTTTTGATTAACGAGCTAGT 57.551 32.000 0.00 0.00 0.00 2.57
229 230 7.073342 ACCATTTTTGATTAACGAGCTAGTC 57.927 36.000 0.00 0.00 0.00 2.59
230 231 6.879458 ACCATTTTTGATTAACGAGCTAGTCT 59.121 34.615 0.00 0.00 0.00 3.24
231 232 8.038944 ACCATTTTTGATTAACGAGCTAGTCTA 58.961 33.333 0.00 0.00 0.00 2.59
232 233 8.543774 CCATTTTTGATTAACGAGCTAGTCTAG 58.456 37.037 0.00 2.18 0.00 2.43
233 234 9.088512 CATTTTTGATTAACGAGCTAGTCTAGT 57.911 33.333 8.68 0.00 31.68 2.57
235 236 9.784680 TTTTTGATTAACGAGCTAGTCTAGTAG 57.215 33.333 8.68 3.39 30.15 2.57
236 237 8.728337 TTTGATTAACGAGCTAGTCTAGTAGA 57.272 34.615 8.68 0.00 30.15 2.59
237 238 7.949903 TGATTAACGAGCTAGTCTAGTAGAG 57.050 40.000 8.68 1.49 30.15 2.43
238 239 6.930164 TGATTAACGAGCTAGTCTAGTAGAGG 59.070 42.308 8.68 0.00 30.15 3.69
239 240 3.116079 ACGAGCTAGTCTAGTAGAGGC 57.884 52.381 8.68 5.92 0.00 4.70
240 241 2.701951 ACGAGCTAGTCTAGTAGAGGCT 59.298 50.000 17.02 17.02 44.48 4.58
241 242 3.135167 ACGAGCTAGTCTAGTAGAGGCTT 59.865 47.826 17.68 6.12 36.38 4.35
242 243 4.344679 ACGAGCTAGTCTAGTAGAGGCTTA 59.655 45.833 17.68 3.40 36.38 3.09
243 244 4.687483 CGAGCTAGTCTAGTAGAGGCTTAC 59.313 50.000 17.68 9.37 36.38 2.34
244 245 5.510179 CGAGCTAGTCTAGTAGAGGCTTACT 60.510 48.000 17.68 12.02 36.38 2.24
245 246 6.294675 CGAGCTAGTCTAGTAGAGGCTTACTA 60.295 46.154 17.68 12.72 36.38 1.82
247 248 6.013984 AGCTAGTCTAGTAGAGGCTTACTAGG 60.014 46.154 26.08 18.07 46.84 3.02
248 249 5.571791 AGTCTAGTAGAGGCTTACTAGGG 57.428 47.826 26.08 14.30 46.84 3.53
249 250 5.226015 AGTCTAGTAGAGGCTTACTAGGGA 58.774 45.833 26.08 15.57 46.84 4.20
250 251 5.072193 AGTCTAGTAGAGGCTTACTAGGGAC 59.928 48.000 26.08 21.45 46.84 4.46
251 252 4.973856 TCTAGTAGAGGCTTACTAGGGACA 59.026 45.833 26.08 14.79 46.84 4.02
252 253 3.900971 AGTAGAGGCTTACTAGGGACAC 58.099 50.000 7.35 0.00 32.25 3.67
253 254 3.528491 AGTAGAGGCTTACTAGGGACACT 59.472 47.826 7.35 0.00 32.25 3.55
254 255 2.741145 AGAGGCTTACTAGGGACACTG 58.259 52.381 0.00 0.00 0.00 3.66
255 256 2.043252 AGAGGCTTACTAGGGACACTGT 59.957 50.000 0.00 0.00 0.00 3.55
256 257 2.166664 GAGGCTTACTAGGGACACTGTG 59.833 54.545 6.19 6.19 0.00 3.66
257 258 1.900486 GGCTTACTAGGGACACTGTGT 59.100 52.381 14.23 14.23 0.00 3.72
258 259 2.302157 GGCTTACTAGGGACACTGTGTT 59.698 50.000 15.54 1.66 0.00 3.32
259 260 3.244457 GGCTTACTAGGGACACTGTGTTT 60.244 47.826 15.54 6.81 0.00 2.83
260 261 4.386711 GCTTACTAGGGACACTGTGTTTT 58.613 43.478 15.54 6.47 0.00 2.43
261 262 4.213482 GCTTACTAGGGACACTGTGTTTTG 59.787 45.833 15.54 7.69 0.00 2.44
262 263 3.926058 ACTAGGGACACTGTGTTTTGT 57.074 42.857 15.54 8.27 0.00 2.83
263 264 3.805207 ACTAGGGACACTGTGTTTTGTC 58.195 45.455 15.54 1.35 41.28 3.18
264 265 3.454812 ACTAGGGACACTGTGTTTTGTCT 59.545 43.478 15.54 10.35 41.65 3.41
265 266 4.652421 ACTAGGGACACTGTGTTTTGTCTA 59.348 41.667 15.54 10.86 41.65 2.59
266 267 4.706842 AGGGACACTGTGTTTTGTCTAT 57.293 40.909 15.54 0.00 41.65 1.98
267 268 4.389374 AGGGACACTGTGTTTTGTCTATG 58.611 43.478 15.54 0.00 41.65 2.23
268 269 4.134563 GGGACACTGTGTTTTGTCTATGT 58.865 43.478 15.54 0.00 41.65 2.29
269 270 5.071250 AGGGACACTGTGTTTTGTCTATGTA 59.929 40.000 15.54 0.00 41.65 2.29
270 271 5.938125 GGGACACTGTGTTTTGTCTATGTAT 59.062 40.000 15.54 0.00 41.65 2.29
271 272 6.092259 GGGACACTGTGTTTTGTCTATGTATC 59.908 42.308 15.54 0.00 41.65 2.24
272 273 6.092259 GGACACTGTGTTTTGTCTATGTATCC 59.908 42.308 15.54 2.49 41.65 2.59
273 274 6.530120 ACACTGTGTTTTGTCTATGTATCCA 58.470 36.000 7.80 0.00 0.00 3.41
274 275 6.426937 ACACTGTGTTTTGTCTATGTATCCAC 59.573 38.462 7.80 0.00 0.00 4.02
275 276 6.426633 CACTGTGTTTTGTCTATGTATCCACA 59.573 38.462 0.00 0.00 39.52 4.17
276 277 6.426937 ACTGTGTTTTGTCTATGTATCCACAC 59.573 38.462 0.00 0.00 37.54 3.82
277 278 6.292150 TGTGTTTTGTCTATGTATCCACACA 58.708 36.000 0.00 0.00 39.63 3.72
278 279 6.939730 TGTGTTTTGTCTATGTATCCACACAT 59.060 34.615 0.00 0.00 41.88 3.21
279 280 7.094848 TGTGTTTTGTCTATGTATCCACACATG 60.095 37.037 0.00 0.00 39.46 3.21
280 281 6.939730 TGTTTTGTCTATGTATCCACACATGT 59.060 34.615 0.00 0.00 39.46 3.21
281 282 8.097662 TGTTTTGTCTATGTATCCACACATGTA 58.902 33.333 0.00 0.00 39.46 2.29
282 283 9.109393 GTTTTGTCTATGTATCCACACATGTAT 57.891 33.333 0.00 0.00 39.46 2.29
283 284 8.887036 TTTGTCTATGTATCCACACATGTATC 57.113 34.615 0.00 0.00 39.46 2.24
284 285 7.595819 TGTCTATGTATCCACACATGTATCA 57.404 36.000 0.00 0.00 39.46 2.15
285 286 8.017418 TGTCTATGTATCCACACATGTATCAA 57.983 34.615 0.00 0.00 39.46 2.57
286 287 8.143835 TGTCTATGTATCCACACATGTATCAAG 58.856 37.037 0.00 0.00 39.46 3.02
287 288 8.144478 GTCTATGTATCCACACATGTATCAAGT 58.856 37.037 0.00 0.00 39.46 3.16
288 289 8.704668 TCTATGTATCCACACATGTATCAAGTT 58.295 33.333 0.00 0.00 39.46 2.66
289 290 9.330063 CTATGTATCCACACATGTATCAAGTTT 57.670 33.333 0.00 0.00 39.46 2.66
290 291 7.609760 TGTATCCACACATGTATCAAGTTTC 57.390 36.000 0.00 0.00 0.00 2.78
291 292 6.597672 TGTATCCACACATGTATCAAGTTTCC 59.402 38.462 0.00 0.00 0.00 3.13
292 293 4.000325 TCCACACATGTATCAAGTTTCCG 59.000 43.478 0.00 0.00 0.00 4.30
293 294 4.000325 CCACACATGTATCAAGTTTCCGA 59.000 43.478 0.00 0.00 0.00 4.55
294 295 4.635765 CCACACATGTATCAAGTTTCCGAT 59.364 41.667 0.00 0.00 0.00 4.18
295 296 5.123820 CCACACATGTATCAAGTTTCCGATT 59.876 40.000 0.00 0.00 0.00 3.34
296 297 6.315144 CCACACATGTATCAAGTTTCCGATTA 59.685 38.462 0.00 0.00 0.00 1.75
297 298 7.148323 CCACACATGTATCAAGTTTCCGATTAA 60.148 37.037 0.00 0.00 0.00 1.40
298 299 8.397906 CACACATGTATCAAGTTTCCGATTAAT 58.602 33.333 0.00 0.00 0.00 1.40
299 300 9.607988 ACACATGTATCAAGTTTCCGATTAATA 57.392 29.630 0.00 0.00 0.00 0.98
300 301 9.864034 CACATGTATCAAGTTTCCGATTAATAC 57.136 33.333 0.00 0.00 0.00 1.89
301 302 9.607988 ACATGTATCAAGTTTCCGATTAATACA 57.392 29.630 0.00 0.00 34.10 2.29
309 310 9.651718 CAAGTTTCCGATTAATACAATTCTAGC 57.348 33.333 0.00 0.00 0.00 3.42
310 311 8.958119 AGTTTCCGATTAATACAATTCTAGCA 57.042 30.769 0.00 0.00 0.00 3.49
311 312 9.561069 AGTTTCCGATTAATACAATTCTAGCAT 57.439 29.630 0.00 0.00 0.00 3.79
312 313 9.599322 GTTTCCGATTAATACAATTCTAGCATG 57.401 33.333 0.00 0.00 0.00 4.06
313 314 9.554395 TTTCCGATTAATACAATTCTAGCATGA 57.446 29.630 0.00 0.00 0.00 3.07
314 315 9.554395 TTCCGATTAATACAATTCTAGCATGAA 57.446 29.630 0.00 0.00 0.00 2.57
315 316 9.725019 TCCGATTAATACAATTCTAGCATGAAT 57.275 29.630 0.00 0.00 38.19 2.57
373 374 6.678568 ATAAACATTGGACATGTTTTCCCA 57.321 33.333 16.01 0.00 46.45 4.37
374 375 5.565455 AAACATTGGACATGTTTTCCCAT 57.435 34.783 0.00 0.00 46.45 4.00
375 376 5.565455 AACATTGGACATGTTTTCCCATT 57.435 34.783 0.00 0.00 38.97 3.16
376 377 5.565455 ACATTGGACATGTTTTCCCATTT 57.435 34.783 0.00 0.00 31.33 2.32
377 378 5.939447 ACATTGGACATGTTTTCCCATTTT 58.061 33.333 0.00 0.00 31.33 1.82
378 379 5.764192 ACATTGGACATGTTTTCCCATTTTG 59.236 36.000 0.00 4.22 31.33 2.44
379 380 3.737850 TGGACATGTTTTCCCATTTTGC 58.262 40.909 0.00 0.00 31.33 3.68
380 381 3.390639 TGGACATGTTTTCCCATTTTGCT 59.609 39.130 0.00 0.00 31.33 3.91
381 382 4.141528 TGGACATGTTTTCCCATTTTGCTT 60.142 37.500 0.00 0.00 31.33 3.91
382 383 5.070981 TGGACATGTTTTCCCATTTTGCTTA 59.929 36.000 0.00 0.00 31.33 3.09
383 384 5.994668 GGACATGTTTTCCCATTTTGCTTAA 59.005 36.000 0.00 0.00 0.00 1.85
384 385 6.147656 GGACATGTTTTCCCATTTTGCTTAAG 59.852 38.462 0.00 0.00 0.00 1.85
385 386 5.997129 ACATGTTTTCCCATTTTGCTTAAGG 59.003 36.000 4.29 0.00 0.00 2.69
386 387 5.622346 TGTTTTCCCATTTTGCTTAAGGT 57.378 34.783 4.29 0.00 0.00 3.50
387 388 6.732896 TGTTTTCCCATTTTGCTTAAGGTA 57.267 33.333 4.29 0.00 0.00 3.08
388 389 7.309770 TGTTTTCCCATTTTGCTTAAGGTAT 57.690 32.000 4.29 0.00 0.00 2.73
389 390 8.423906 TGTTTTCCCATTTTGCTTAAGGTATA 57.576 30.769 4.29 0.00 0.00 1.47
390 391 9.041354 TGTTTTCCCATTTTGCTTAAGGTATAT 57.959 29.630 4.29 0.00 0.00 0.86
414 415 2.094762 ATAAGGAATATGGGTCGCGC 57.905 50.000 0.00 0.00 0.00 6.86
415 416 1.045407 TAAGGAATATGGGTCGCGCT 58.955 50.000 5.56 0.00 0.00 5.92
416 417 1.045407 AAGGAATATGGGTCGCGCTA 58.955 50.000 5.56 0.00 0.00 4.26
417 418 1.267121 AGGAATATGGGTCGCGCTAT 58.733 50.000 5.56 0.00 0.00 2.97
418 419 1.623811 AGGAATATGGGTCGCGCTATT 59.376 47.619 5.56 0.86 0.00 1.73
419 420 2.000447 GGAATATGGGTCGCGCTATTC 59.000 52.381 5.56 10.78 32.36 1.75
420 421 1.654105 GAATATGGGTCGCGCTATTCG 59.346 52.381 5.56 0.00 42.12 3.34
421 422 0.601558 ATATGGGTCGCGCTATTCGT 59.398 50.000 5.56 0.00 41.07 3.85
422 423 0.039798 TATGGGTCGCGCTATTCGTC 60.040 55.000 5.56 0.00 41.07 4.20
423 424 2.011741 ATGGGTCGCGCTATTCGTCA 62.012 55.000 5.56 0.00 41.07 4.35
424 425 2.228914 GGGTCGCGCTATTCGTCAC 61.229 63.158 5.56 0.00 41.07 3.67
425 426 2.228914 GGTCGCGCTATTCGTCACC 61.229 63.158 5.56 0.00 41.07 4.02
426 427 2.103538 TCGCGCTATTCGTCACCC 59.896 61.111 5.56 0.00 41.07 4.61
427 428 2.104331 CGCGCTATTCGTCACCCT 59.896 61.111 5.56 0.00 41.07 4.34
428 429 2.230940 CGCGCTATTCGTCACCCTG 61.231 63.158 5.56 0.00 41.07 4.45
429 430 1.883084 GCGCTATTCGTCACCCTGG 60.883 63.158 0.00 0.00 41.07 4.45
430 431 1.227263 CGCTATTCGTCACCCTGGG 60.227 63.158 12.28 12.28 0.00 4.45
431 432 1.905512 GCTATTCGTCACCCTGGGT 59.094 57.895 14.05 14.05 35.62 4.51
442 443 2.361085 ACCCTGGGTGAGGAATAGTT 57.639 50.000 19.82 0.00 46.33 2.24
443 444 3.502051 ACCCTGGGTGAGGAATAGTTA 57.498 47.619 19.82 0.00 46.33 2.24
444 445 4.022359 ACCCTGGGTGAGGAATAGTTAT 57.978 45.455 19.82 0.00 46.33 1.89
445 446 4.380791 ACCCTGGGTGAGGAATAGTTATT 58.619 43.478 19.82 0.00 46.33 1.40
446 447 4.412528 ACCCTGGGTGAGGAATAGTTATTC 59.587 45.833 19.82 3.75 46.33 1.75
447 448 4.660771 CCCTGGGTGAGGAATAGTTATTCT 59.339 45.833 3.97 0.00 46.33 2.40
448 449 5.221742 CCCTGGGTGAGGAATAGTTATTCTC 60.222 48.000 3.97 7.63 46.33 2.87
449 450 5.366768 CCTGGGTGAGGAATAGTTATTCTCA 59.633 44.000 10.71 9.50 46.33 3.27
450 451 6.043706 CCTGGGTGAGGAATAGTTATTCTCAT 59.956 42.308 10.71 0.15 46.33 2.90
451 452 7.067496 TGGGTGAGGAATAGTTATTCTCATC 57.933 40.000 10.71 11.35 41.33 2.92
452 453 6.043243 TGGGTGAGGAATAGTTATTCTCATCC 59.957 42.308 21.50 21.50 42.93 3.51
453 454 6.468543 GGTGAGGAATAGTTATTCTCATCCC 58.531 44.000 10.71 7.80 41.33 3.85
454 455 6.468543 GTGAGGAATAGTTATTCTCATCCCC 58.531 44.000 10.71 0.00 41.33 4.81
455 456 6.271159 GTGAGGAATAGTTATTCTCATCCCCT 59.729 42.308 10.71 0.00 41.33 4.79
456 457 6.498651 TGAGGAATAGTTATTCTCATCCCCTC 59.501 42.308 10.71 0.00 41.33 4.30
457 458 6.638953 AGGAATAGTTATTCTCATCCCCTCT 58.361 40.000 10.71 0.00 41.33 3.69
458 459 7.085601 AGGAATAGTTATTCTCATCCCCTCTT 58.914 38.462 10.71 0.00 41.33 2.85
459 460 7.574372 AGGAATAGTTATTCTCATCCCCTCTTT 59.426 37.037 10.71 0.00 41.33 2.52
460 461 8.881262 GGAATAGTTATTCTCATCCCCTCTTTA 58.119 37.037 10.71 0.00 41.33 1.85
465 466 9.413734 AGTTATTCTCATCCCCTCTTTATTTTG 57.586 33.333 0.00 0.00 0.00 2.44
466 467 9.408648 GTTATTCTCATCCCCTCTTTATTTTGA 57.591 33.333 0.00 0.00 0.00 2.69
467 468 7.888250 ATTCTCATCCCCTCTTTATTTTGAC 57.112 36.000 0.00 0.00 0.00 3.18
468 469 6.387192 TCTCATCCCCTCTTTATTTTGACA 57.613 37.500 0.00 0.00 0.00 3.58
469 470 6.973642 TCTCATCCCCTCTTTATTTTGACAT 58.026 36.000 0.00 0.00 0.00 3.06
470 471 7.056635 TCTCATCCCCTCTTTATTTTGACATC 58.943 38.462 0.00 0.00 0.00 3.06
471 472 6.730447 TCATCCCCTCTTTATTTTGACATCA 58.270 36.000 0.00 0.00 0.00 3.07
472 473 7.181361 TCATCCCCTCTTTATTTTGACATCAA 58.819 34.615 0.00 0.00 0.00 2.57
473 474 7.840716 TCATCCCCTCTTTATTTTGACATCAAT 59.159 33.333 0.00 0.00 35.55 2.57
474 475 7.408756 TCCCCTCTTTATTTTGACATCAATG 57.591 36.000 0.00 0.00 35.55 2.82
475 476 6.044682 CCCCTCTTTATTTTGACATCAATGC 58.955 40.000 0.00 0.00 35.55 3.56
476 477 6.351202 CCCCTCTTTATTTTGACATCAATGCA 60.351 38.462 0.00 0.00 35.55 3.96
477 478 6.532657 CCCTCTTTATTTTGACATCAATGCAC 59.467 38.462 0.00 0.00 35.55 4.57
478 479 6.532657 CCTCTTTATTTTGACATCAATGCACC 59.467 38.462 0.00 0.00 35.55 5.01
479 480 6.092092 TCTTTATTTTGACATCAATGCACCG 58.908 36.000 0.00 0.00 35.55 4.94
480 481 3.940209 ATTTTGACATCAATGCACCGT 57.060 38.095 0.00 0.00 35.55 4.83
481 482 6.502136 TTATTTTGACATCAATGCACCGTA 57.498 33.333 0.00 0.00 35.55 4.02
482 483 5.581126 ATTTTGACATCAATGCACCGTAT 57.419 34.783 0.00 0.00 35.55 3.06
483 484 5.384063 TTTTGACATCAATGCACCGTATT 57.616 34.783 0.00 0.00 35.55 1.89
484 485 5.384063 TTTGACATCAATGCACCGTATTT 57.616 34.783 0.00 0.00 35.55 1.40
485 486 5.384063 TTGACATCAATGCACCGTATTTT 57.616 34.783 0.00 0.00 0.00 1.82
486 487 5.384063 TGACATCAATGCACCGTATTTTT 57.616 34.783 0.00 0.00 0.00 1.94
487 488 6.502136 TGACATCAATGCACCGTATTTTTA 57.498 33.333 0.00 0.00 0.00 1.52
488 489 6.318628 TGACATCAATGCACCGTATTTTTAC 58.681 36.000 0.00 0.00 0.00 2.01
489 490 5.328691 ACATCAATGCACCGTATTTTTACG 58.671 37.500 0.00 0.00 42.56 3.18
490 491 5.106475 ACATCAATGCACCGTATTTTTACGT 60.106 36.000 0.00 0.00 41.46 3.57
491 492 5.359716 TCAATGCACCGTATTTTTACGTT 57.640 34.783 0.00 0.00 41.46 3.99
492 493 5.759963 TCAATGCACCGTATTTTTACGTTT 58.240 33.333 0.00 0.00 41.46 3.60
493 494 5.852229 TCAATGCACCGTATTTTTACGTTTC 59.148 36.000 0.00 0.00 41.46 2.78
494 495 3.796783 TGCACCGTATTTTTACGTTTCG 58.203 40.909 0.00 0.00 41.46 3.46
495 496 3.247173 TGCACCGTATTTTTACGTTTCGT 59.753 39.130 0.00 0.00 44.35 3.85
496 497 4.445718 TGCACCGTATTTTTACGTTTCGTA 59.554 37.500 0.00 0.00 41.54 3.43
513 514 9.719279 ACGTTTCGTAAATTTTGTCTTATTTCA 57.281 25.926 0.00 0.00 38.73 2.69
549 550 9.570488 AGAGAACGTAAGAAAATATGTACTCAC 57.430 33.333 0.00 0.00 43.62 3.51
550 551 8.699283 AGAACGTAAGAAAATATGTACTCACC 57.301 34.615 0.00 0.00 43.62 4.02
551 552 7.487189 AGAACGTAAGAAAATATGTACTCACCG 59.513 37.037 0.00 0.00 43.62 4.94
552 553 6.624423 ACGTAAGAAAATATGTACTCACCGT 58.376 36.000 0.00 0.00 43.62 4.83
553 554 7.761409 ACGTAAGAAAATATGTACTCACCGTA 58.239 34.615 0.00 0.00 43.62 4.02
554 555 8.243426 ACGTAAGAAAATATGTACTCACCGTAA 58.757 33.333 0.00 0.00 43.62 3.18
555 556 9.075519 CGTAAGAAAATATGTACTCACCGTAAA 57.924 33.333 0.00 0.00 43.02 2.01
559 560 9.715121 AGAAAATATGTACTCACCGTAAAAAGA 57.285 29.630 0.00 0.00 0.00 2.52
566 567 8.836268 TGTACTCACCGTAAAAAGATTATGTT 57.164 30.769 0.00 0.00 0.00 2.71
567 568 9.926158 TGTACTCACCGTAAAAAGATTATGTTA 57.074 29.630 0.00 0.00 0.00 2.41
569 570 7.956558 ACTCACCGTAAAAAGATTATGTTACG 58.043 34.615 7.61 7.61 45.14 3.18
570 571 7.599998 ACTCACCGTAAAAAGATTATGTTACGT 59.400 33.333 12.22 0.00 44.46 3.57
571 572 8.978564 TCACCGTAAAAAGATTATGTTACGTA 57.021 30.769 12.22 0.00 44.46 3.57
572 573 9.416794 TCACCGTAAAAAGATTATGTTACGTAA 57.583 29.630 3.29 3.29 44.46 3.18
716 717 9.797556 ATTCTAAACGTAATTTATTTGGGAAGC 57.202 29.630 0.00 0.00 32.23 3.86
717 718 7.465989 TCTAAACGTAATTTATTTGGGAAGCG 58.534 34.615 0.00 0.00 32.23 4.68
718 719 5.883503 AACGTAATTTATTTGGGAAGCGA 57.116 34.783 0.00 0.00 0.00 4.93
719 720 6.445357 AACGTAATTTATTTGGGAAGCGAT 57.555 33.333 0.00 0.00 0.00 4.58
720 721 6.056428 ACGTAATTTATTTGGGAAGCGATC 57.944 37.500 0.00 0.00 0.00 3.69
721 722 5.137403 CGTAATTTATTTGGGAAGCGATCG 58.863 41.667 11.69 11.69 0.00 3.69
722 723 5.277154 CGTAATTTATTTGGGAAGCGATCGT 60.277 40.000 17.81 0.00 0.00 3.73
723 724 6.074195 CGTAATTTATTTGGGAAGCGATCGTA 60.074 38.462 17.81 0.00 0.00 3.43
724 725 6.687081 AATTTATTTGGGAAGCGATCGTAA 57.313 33.333 17.81 0.96 0.00 3.18
725 726 5.728351 TTTATTTGGGAAGCGATCGTAAG 57.272 39.130 17.81 0.00 0.00 2.34
763 764 5.757850 GAATAACTTATTCTGCACCCTGG 57.242 43.478 12.55 0.00 41.00 4.45
764 765 2.514458 AACTTATTCTGCACCCTGGG 57.486 50.000 12.28 12.28 0.00 4.45
765 766 1.372501 ACTTATTCTGCACCCTGGGT 58.627 50.000 14.05 14.05 35.62 4.51
766 767 7.850027 GAATAACTTATTCTGCACCCTGGGTG 61.850 46.154 36.31 36.31 46.08 4.61
767 768 9.907723 GAATAACTTATTCTGCACCCTGGGTGA 62.908 44.444 42.58 27.49 46.15 4.02
842 843 4.009675 AGAAAAATGCGACATTGCTCCTA 58.990 39.130 5.95 0.00 35.36 2.94
862 863 6.539173 TCCTACAGGTTGCTTAATGAAAAGA 58.461 36.000 0.00 0.00 36.34 2.52
1174 1183 1.719063 ATGGCACCACTTCACCTGGT 61.719 55.000 0.00 0.00 43.22 4.00
1334 1343 0.673644 GCCTTCAAGAGCGCAGGTTA 60.674 55.000 11.47 0.00 39.88 2.85
1468 1477 4.261363 GCTGATCTACCTTAGCCAAAATGC 60.261 45.833 0.00 0.00 0.00 3.56
1499 1508 4.253685 TGTCTAGTGGCAGTTTAGATTGC 58.746 43.478 0.00 0.00 37.74 3.56
1646 1655 4.202357 ACAGGGATGCGCTTCTATTTGATA 60.202 41.667 21.05 0.00 0.00 2.15
1648 1657 5.064452 CAGGGATGCGCTTCTATTTGATATC 59.936 44.000 21.05 5.44 0.00 1.63
1696 1705 7.867305 TGGTAGATGTTTGTTTCTGTGTTAA 57.133 32.000 0.00 0.00 0.00 2.01
1766 1775 5.306532 ACAAGCTCTGCATAGACAAAATG 57.693 39.130 2.78 0.00 0.00 2.32
1857 1866 3.441222 TGCATGCTCCTCTAACACAATTG 59.559 43.478 20.33 3.24 0.00 2.32
1907 1917 4.735873 GCTCTTGAAGAAAGCAAAGCACTT 60.736 41.667 0.00 0.00 35.69 3.16
2017 2027 2.025981 CACTGAAGATCACCCAATCCCA 60.026 50.000 0.00 0.00 0.00 4.37
2143 2154 2.675348 CAAAATTTTGGTTGCACGGTGT 59.325 40.909 21.00 0.00 34.59 4.16
2206 2217 4.122143 AGAGCAGCATCTCTGAAACTAC 57.878 45.455 6.91 0.00 45.72 2.73
2252 2263 4.823989 ACTGAACTGCTTATTTGCACTCTT 59.176 37.500 0.00 0.00 38.12 2.85
2310 2321 8.546083 TTGCATATTTGGAAACTATATGGGTT 57.454 30.769 0.00 0.00 36.95 4.11
2468 2479 7.819900 GTCTTTACTAATGCCTGAAAGAGAAGA 59.180 37.037 0.00 0.00 36.94 2.87
2499 2510 2.627699 TGGCTTCCTGGAATTGTTGTTC 59.372 45.455 10.03 0.00 0.00 3.18
2534 2545 6.704493 GGTTGTTTGAGATACTTGTGTACTCA 59.296 38.462 0.00 0.00 36.26 3.41
2614 3513 1.517694 CATTGCAATCCCAGCGCAC 60.518 57.895 9.53 0.00 34.87 5.34
2787 3686 3.126000 GTGCAAAGAGTGTAGGCTGAATC 59.874 47.826 0.00 0.00 0.00 2.52
2798 3697 0.390340 GGCTGAATCGACACTGCAGA 60.390 55.000 23.35 0.00 33.75 4.26
2822 3721 6.321821 AGCACCCAAAATATCCACTAACTA 57.678 37.500 0.00 0.00 0.00 2.24
2845 3744 2.359900 ACTCAACGCATTTGGAGATCC 58.640 47.619 0.00 0.00 35.69 3.36
2846 3745 1.672881 CTCAACGCATTTGGAGATCCC 59.327 52.381 0.00 0.00 35.69 3.85
2847 3746 1.281867 TCAACGCATTTGGAGATCCCT 59.718 47.619 0.00 0.00 35.69 4.20
2848 3747 1.402968 CAACGCATTTGGAGATCCCTG 59.597 52.381 0.00 0.00 35.38 4.45
2849 3748 0.911769 ACGCATTTGGAGATCCCTGA 59.088 50.000 0.00 0.00 35.38 3.86
2861 3760 0.761187 ATCCCTGAGCGTGCATGTAT 59.239 50.000 7.93 0.00 0.00 2.29
2880 3779 9.284968 GCATGTATAATGTTACCAGGTTTATCT 57.715 33.333 0.00 0.00 0.00 1.98
2894 3793 5.179368 CAGGTTTATCTGTCACATTTGTCGT 59.821 40.000 0.00 0.00 0.00 4.34
2942 3841 9.420118 TCAAGTGGTATTGGCATATTTAGAAAT 57.580 29.630 0.00 0.00 0.00 2.17
3007 3906 4.006989 CCAGGTTTATCCGTCACATTTGA 58.993 43.478 0.00 0.00 41.99 2.69
3025 3925 5.804692 TTTGACGCTCTGTTTTAAACTGA 57.195 34.783 14.82 14.82 37.69 3.41
3050 3950 4.644685 GGTGTCAAGTGGTATTGGCATATT 59.355 41.667 0.00 0.00 45.73 1.28
3059 3959 8.995027 AGTGGTATTGGCATATTTAGAAATCA 57.005 30.769 0.00 0.00 0.00 2.57
3089 3989 4.637977 TCACGAAATTTATGTGCTGCCATA 59.362 37.500 14.99 2.00 33.69 2.74
3091 3991 4.640201 ACGAAATTTATGTGCTGCCATAGT 59.360 37.500 0.00 0.00 0.00 2.12
3123 4023 7.484641 GCTTATTAAGATTTGACAATCGTGCAA 59.515 33.333 7.63 0.00 43.38 4.08
3124 4024 8.894409 TTATTAAGATTTGACAATCGTGCAAG 57.106 30.769 0.00 0.00 43.38 4.01
3129 4029 4.764679 TTTGACAATCGTGCAAGCTTAT 57.235 36.364 0.00 0.00 0.00 1.73
3133 4033 2.604914 ACAATCGTGCAAGCTTATCTCG 59.395 45.455 0.00 7.29 0.00 4.04
3166 4066 3.181503 GCACATGGAGCACTAATGAGTTG 60.182 47.826 7.44 0.00 31.73 3.16
3184 4084 0.776810 TGCTGGGATCACAGGGAAAA 59.223 50.000 26.06 0.00 38.90 2.29
3197 4097 4.744631 CACAGGGAAAACAAAAGTGTATGC 59.255 41.667 0.00 0.00 36.80 3.14
3258 4159 6.939730 TGTGTCTATTTGTTAAGCTGGATCAA 59.060 34.615 0.00 0.00 0.00 2.57
3294 4195 7.993183 ACTAATGGATAATTTATAGCCCCGATG 59.007 37.037 0.00 0.00 0.00 3.84
3306 4207 1.943340 GCCCCGATGAGATCAAACTTC 59.057 52.381 0.00 0.00 0.00 3.01
3358 4260 9.474920 TTTAATTGACAAATTAGAGGCAACTTG 57.525 29.630 0.00 0.00 40.84 3.16
3378 4326 8.986847 CAACTTGCTCTACATAAAGGATATGAG 58.013 37.037 2.67 0.00 0.00 2.90
3530 4479 6.571605 AGTGATCGCCATGATATGATAAGAG 58.428 40.000 1.76 0.00 37.47 2.85
3542 4491 7.652727 TGATATGATAAGAGAGTGAAAGACGG 58.347 38.462 0.00 0.00 0.00 4.79
3562 4511 3.303990 CGGAAGTTTCTGTGTCCAACATG 60.304 47.826 0.00 0.00 38.39 3.21
3617 5200 8.950403 AAATAGCTTTCTAGTTAGCAAAAACG 57.050 30.769 17.08 0.00 39.85 3.60
3665 5248 9.023967 CAACATTTTCAGTTCAAGGTAAGAAAG 57.976 33.333 0.00 0.00 0.00 2.62
3666 5249 8.293699 ACATTTTCAGTTCAAGGTAAGAAAGT 57.706 30.769 0.00 0.00 0.00 2.66
3696 5279 6.879458 ACTTATTTCGTCATAGAAGCCAACTT 59.121 34.615 0.00 0.00 39.43 2.66
3726 5309 9.768215 ACATATAATTCTCCTTTTCCTTTTCCA 57.232 29.630 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.140747 AGATTATGCAACTCTCGGATACC 57.859 43.478 0.00 0.00 0.00 2.73
21 22 9.509855 CTATAAGATTATGCAACTCTCGGATAC 57.490 37.037 0.00 0.00 0.00 2.24
22 23 9.244292 ACTATAAGATTATGCAACTCTCGGATA 57.756 33.333 0.00 0.00 0.00 2.59
23 24 8.128322 ACTATAAGATTATGCAACTCTCGGAT 57.872 34.615 0.00 0.00 0.00 4.18
24 25 7.230712 TGACTATAAGATTATGCAACTCTCGGA 59.769 37.037 0.00 0.00 0.00 4.55
25 26 7.371159 TGACTATAAGATTATGCAACTCTCGG 58.629 38.462 0.00 0.00 0.00 4.63
26 27 8.803201 TTGACTATAAGATTATGCAACTCTCG 57.197 34.615 0.00 0.00 0.00 4.04
59 60 8.777413 GCTATTGCTTTCTTCATGTCATATACA 58.223 33.333 0.00 0.00 38.22 2.29
60 61 8.777413 TGCTATTGCTTTCTTCATGTCATATAC 58.223 33.333 0.00 0.00 40.48 1.47
61 62 8.907222 TGCTATTGCTTTCTTCATGTCATATA 57.093 30.769 0.00 0.00 40.48 0.86
62 63 7.812690 TGCTATTGCTTTCTTCATGTCATAT 57.187 32.000 0.00 0.00 40.48 1.78
63 64 7.628769 TTGCTATTGCTTTCTTCATGTCATA 57.371 32.000 0.00 0.00 40.48 2.15
64 65 6.519679 TTGCTATTGCTTTCTTCATGTCAT 57.480 33.333 0.00 0.00 40.48 3.06
65 66 5.963176 TTGCTATTGCTTTCTTCATGTCA 57.037 34.783 0.00 0.00 40.48 3.58
66 67 8.915871 TTTATTGCTATTGCTTTCTTCATGTC 57.084 30.769 0.00 0.00 40.48 3.06
67 68 9.143631 GTTTTATTGCTATTGCTTTCTTCATGT 57.856 29.630 0.00 0.00 40.48 3.21
68 69 9.362539 AGTTTTATTGCTATTGCTTTCTTCATG 57.637 29.630 0.00 0.00 40.48 3.07
69 70 9.933723 AAGTTTTATTGCTATTGCTTTCTTCAT 57.066 25.926 0.00 0.00 40.48 2.57
98 99 9.458727 CCATTCATTACCTTAGCATAATGATCT 57.541 33.333 13.97 6.31 43.73 2.75
99 100 8.680903 CCCATTCATTACCTTAGCATAATGATC 58.319 37.037 13.97 0.00 43.73 2.92
100 101 8.172741 ACCCATTCATTACCTTAGCATAATGAT 58.827 33.333 13.97 6.12 43.73 2.45
101 102 7.526041 ACCCATTCATTACCTTAGCATAATGA 58.474 34.615 10.94 10.94 43.01 2.57
102 103 7.667219 AGACCCATTCATTACCTTAGCATAATG 59.333 37.037 7.66 7.66 39.25 1.90
103 104 7.759607 AGACCCATTCATTACCTTAGCATAAT 58.240 34.615 0.00 0.00 0.00 1.28
104 105 7.149202 AGACCCATTCATTACCTTAGCATAA 57.851 36.000 0.00 0.00 0.00 1.90
105 106 6.763715 AGACCCATTCATTACCTTAGCATA 57.236 37.500 0.00 0.00 0.00 3.14
106 107 5.653255 AGACCCATTCATTACCTTAGCAT 57.347 39.130 0.00 0.00 0.00 3.79
107 108 5.192927 CAAGACCCATTCATTACCTTAGCA 58.807 41.667 0.00 0.00 0.00 3.49
108 109 5.193679 ACAAGACCCATTCATTACCTTAGC 58.806 41.667 0.00 0.00 0.00 3.09
109 110 5.823045 GGACAAGACCCATTCATTACCTTAG 59.177 44.000 0.00 0.00 0.00 2.18
110 111 5.251932 TGGACAAGACCCATTCATTACCTTA 59.748 40.000 0.00 0.00 0.00 2.69
111 112 4.044065 TGGACAAGACCCATTCATTACCTT 59.956 41.667 0.00 0.00 0.00 3.50
112 113 3.591527 TGGACAAGACCCATTCATTACCT 59.408 43.478 0.00 0.00 0.00 3.08
113 114 3.963129 TGGACAAGACCCATTCATTACC 58.037 45.455 0.00 0.00 0.00 2.85
114 115 4.273480 CGATGGACAAGACCCATTCATTAC 59.727 45.833 0.00 0.00 43.96 1.89
115 116 4.450976 CGATGGACAAGACCCATTCATTA 58.549 43.478 0.00 0.00 43.96 1.90
116 117 3.282021 CGATGGACAAGACCCATTCATT 58.718 45.455 0.00 0.00 43.96 2.57
117 118 2.923121 CGATGGACAAGACCCATTCAT 58.077 47.619 0.00 0.00 43.96 2.57
118 119 1.678728 GCGATGGACAAGACCCATTCA 60.679 52.381 0.00 0.00 43.96 2.57
119 120 1.017387 GCGATGGACAAGACCCATTC 58.983 55.000 0.00 0.00 43.96 2.67
120 121 0.327924 TGCGATGGACAAGACCCATT 59.672 50.000 0.00 0.00 43.96 3.16
121 122 0.392998 GTGCGATGGACAAGACCCAT 60.393 55.000 0.00 0.00 46.40 4.00
122 123 1.003839 GTGCGATGGACAAGACCCA 60.004 57.895 0.00 0.00 38.19 4.51
123 124 1.745489 GGTGCGATGGACAAGACCC 60.745 63.158 0.00 0.00 0.00 4.46
124 125 0.392998 ATGGTGCGATGGACAAGACC 60.393 55.000 0.00 0.00 0.00 3.85
125 126 1.398390 GAATGGTGCGATGGACAAGAC 59.602 52.381 0.00 0.00 0.00 3.01
126 127 1.278985 AGAATGGTGCGATGGACAAGA 59.721 47.619 0.00 0.00 0.00 3.02
127 128 1.667724 GAGAATGGTGCGATGGACAAG 59.332 52.381 0.00 0.00 0.00 3.16
128 129 1.678728 GGAGAATGGTGCGATGGACAA 60.679 52.381 0.00 0.00 0.00 3.18
129 130 0.107703 GGAGAATGGTGCGATGGACA 60.108 55.000 0.00 0.00 0.00 4.02
130 131 0.179000 AGGAGAATGGTGCGATGGAC 59.821 55.000 0.00 0.00 0.00 4.02
131 132 1.788229 TAGGAGAATGGTGCGATGGA 58.212 50.000 0.00 0.00 0.00 3.41
132 133 2.620251 TTAGGAGAATGGTGCGATGG 57.380 50.000 0.00 0.00 0.00 3.51
133 134 3.732212 TCATTAGGAGAATGGTGCGATG 58.268 45.455 0.00 0.00 0.00 3.84
134 135 4.202398 ACATCATTAGGAGAATGGTGCGAT 60.202 41.667 9.84 0.00 41.27 4.58
135 136 3.134623 ACATCATTAGGAGAATGGTGCGA 59.865 43.478 9.84 0.00 41.27 5.10
136 137 3.249320 CACATCATTAGGAGAATGGTGCG 59.751 47.826 9.84 0.00 41.27 5.34
137 138 4.454678 TCACATCATTAGGAGAATGGTGC 58.545 43.478 9.84 0.00 41.27 5.01
138 139 5.704515 GGATCACATCATTAGGAGAATGGTG 59.295 44.000 8.62 8.62 42.77 4.17
139 140 5.222007 GGGATCACATCATTAGGAGAATGGT 60.222 44.000 0.00 0.00 0.00 3.55
140 141 5.251764 GGGATCACATCATTAGGAGAATGG 58.748 45.833 0.00 0.00 0.00 3.16
141 142 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
142 143 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
143 144 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
144 145 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
145 146 4.202253 TGAACGGGATCACATCATTAGGAG 60.202 45.833 0.00 0.00 0.00 3.69
146 147 3.709141 TGAACGGGATCACATCATTAGGA 59.291 43.478 0.00 0.00 0.00 2.94
147 148 4.071961 TGAACGGGATCACATCATTAGG 57.928 45.455 0.00 0.00 0.00 2.69
148 149 5.299949 TGATGAACGGGATCACATCATTAG 58.700 41.667 12.97 0.00 42.31 1.73
149 150 5.289083 TGATGAACGGGATCACATCATTA 57.711 39.130 12.97 7.64 42.31 1.90
150 151 4.155063 TGATGAACGGGATCACATCATT 57.845 40.909 12.97 0.36 42.31 2.57
151 152 3.843893 TGATGAACGGGATCACATCAT 57.156 42.857 11.89 11.89 42.31 2.45
152 153 3.625649 TTGATGAACGGGATCACATCA 57.374 42.857 0.00 0.00 44.40 3.07
153 154 5.505173 AATTTGATGAACGGGATCACATC 57.495 39.130 0.00 0.00 39.35 3.06
154 155 5.885352 TGTAATTTGATGAACGGGATCACAT 59.115 36.000 0.00 0.00 29.39 3.21
155 156 5.249420 TGTAATTTGATGAACGGGATCACA 58.751 37.500 0.00 0.00 29.39 3.58
156 157 5.811399 TGTAATTTGATGAACGGGATCAC 57.189 39.130 0.00 0.00 29.39 3.06
157 158 5.707764 TGTTGTAATTTGATGAACGGGATCA 59.292 36.000 0.00 0.00 0.00 2.92
158 159 6.027749 GTGTTGTAATTTGATGAACGGGATC 58.972 40.000 0.00 0.00 0.00 3.36
159 160 5.475220 TGTGTTGTAATTTGATGAACGGGAT 59.525 36.000 0.00 0.00 0.00 3.85
160 161 4.822350 TGTGTTGTAATTTGATGAACGGGA 59.178 37.500 0.00 0.00 0.00 5.14
161 162 5.114785 TGTGTTGTAATTTGATGAACGGG 57.885 39.130 0.00 0.00 0.00 5.28
162 163 6.148948 ACATGTGTTGTAATTTGATGAACGG 58.851 36.000 0.00 0.00 36.57 4.44
163 164 7.077605 AGACATGTGTTGTAATTTGATGAACG 58.922 34.615 1.15 0.00 39.18 3.95
166 167 8.676401 CCATAGACATGTGTTGTAATTTGATGA 58.324 33.333 1.15 0.00 39.18 2.92
167 168 8.461222 ACCATAGACATGTGTTGTAATTTGATG 58.539 33.333 1.15 0.00 39.18 3.07
168 169 8.579850 ACCATAGACATGTGTTGTAATTTGAT 57.420 30.769 1.15 0.00 39.18 2.57
169 170 7.994425 ACCATAGACATGTGTTGTAATTTGA 57.006 32.000 1.15 0.00 39.18 2.69
170 171 9.773328 CTAACCATAGACATGTGTTGTAATTTG 57.227 33.333 1.15 0.00 39.18 2.32
171 172 8.956426 CCTAACCATAGACATGTGTTGTAATTT 58.044 33.333 1.15 0.00 39.18 1.82
172 173 8.325787 TCCTAACCATAGACATGTGTTGTAATT 58.674 33.333 1.15 0.00 39.18 1.40
173 174 7.857456 TCCTAACCATAGACATGTGTTGTAAT 58.143 34.615 1.15 0.00 39.18 1.89
174 175 7.247456 TCCTAACCATAGACATGTGTTGTAA 57.753 36.000 1.15 0.00 39.18 2.41
175 176 6.860790 TCCTAACCATAGACATGTGTTGTA 57.139 37.500 1.15 0.00 39.18 2.41
176 177 5.755409 TCCTAACCATAGACATGTGTTGT 57.245 39.130 1.15 0.00 42.79 3.32
177 178 6.655003 AGTTTCCTAACCATAGACATGTGTTG 59.345 38.462 1.15 0.54 34.71 3.33
178 179 6.779860 AGTTTCCTAACCATAGACATGTGTT 58.220 36.000 1.15 3.14 34.71 3.32
179 180 6.374417 AGTTTCCTAACCATAGACATGTGT 57.626 37.500 1.15 0.22 34.71 3.72
180 181 8.665685 GTTAAGTTTCCTAACCATAGACATGTG 58.334 37.037 1.15 0.00 34.71 3.21
181 182 7.827729 GGTTAAGTTTCCTAACCATAGACATGT 59.172 37.037 0.00 0.00 41.99 3.21
182 183 7.827236 TGGTTAAGTTTCCTAACCATAGACATG 59.173 37.037 9.79 0.00 45.67 3.21
183 184 7.924541 TGGTTAAGTTTCCTAACCATAGACAT 58.075 34.615 9.79 0.00 45.67 3.06
184 185 7.319052 TGGTTAAGTTTCCTAACCATAGACA 57.681 36.000 9.79 0.00 45.67 3.41
191 192 9.772973 AATCAAAAATGGTTAAGTTTCCTAACC 57.227 29.630 5.05 5.05 42.55 2.85
195 196 9.471084 CGTTAATCAAAAATGGTTAAGTTTCCT 57.529 29.630 0.00 0.00 0.00 3.36
196 197 9.465985 TCGTTAATCAAAAATGGTTAAGTTTCC 57.534 29.630 0.00 0.00 0.00 3.13
198 199 8.974408 GCTCGTTAATCAAAAATGGTTAAGTTT 58.026 29.630 0.00 0.00 0.00 2.66
199 200 8.357402 AGCTCGTTAATCAAAAATGGTTAAGTT 58.643 29.630 0.00 0.00 0.00 2.66
200 201 7.882179 AGCTCGTTAATCAAAAATGGTTAAGT 58.118 30.769 0.00 0.00 0.00 2.24
201 202 9.490663 CTAGCTCGTTAATCAAAAATGGTTAAG 57.509 33.333 0.00 0.00 0.00 1.85
202 203 9.005777 ACTAGCTCGTTAATCAAAAATGGTTAA 57.994 29.630 0.00 0.00 0.00 2.01
203 204 8.556213 ACTAGCTCGTTAATCAAAAATGGTTA 57.444 30.769 0.00 0.00 0.00 2.85
204 205 7.390718 AGACTAGCTCGTTAATCAAAAATGGTT 59.609 33.333 0.00 0.00 0.00 3.67
205 206 6.879458 AGACTAGCTCGTTAATCAAAAATGGT 59.121 34.615 0.00 0.00 0.00 3.55
206 207 7.308782 AGACTAGCTCGTTAATCAAAAATGG 57.691 36.000 0.00 0.00 0.00 3.16
207 208 9.088512 ACTAGACTAGCTCGTTAATCAAAAATG 57.911 33.333 9.52 0.00 0.00 2.32
209 210 9.784680 CTACTAGACTAGCTCGTTAATCAAAAA 57.215 33.333 9.52 0.00 0.00 1.94
210 211 9.170734 TCTACTAGACTAGCTCGTTAATCAAAA 57.829 33.333 9.52 0.00 0.00 2.44
211 212 8.728337 TCTACTAGACTAGCTCGTTAATCAAA 57.272 34.615 9.52 0.00 0.00 2.69
212 213 7.441760 CCTCTACTAGACTAGCTCGTTAATCAA 59.558 40.741 9.52 0.00 0.00 2.57
213 214 6.930164 CCTCTACTAGACTAGCTCGTTAATCA 59.070 42.308 9.52 0.00 0.00 2.57
214 215 6.128472 GCCTCTACTAGACTAGCTCGTTAATC 60.128 46.154 9.52 0.00 0.00 1.75
215 216 5.702209 GCCTCTACTAGACTAGCTCGTTAAT 59.298 44.000 9.52 0.00 0.00 1.40
216 217 5.055812 GCCTCTACTAGACTAGCTCGTTAA 58.944 45.833 9.52 0.00 0.00 2.01
217 218 4.344679 AGCCTCTACTAGACTAGCTCGTTA 59.655 45.833 9.52 0.00 0.00 3.18
218 219 3.135167 AGCCTCTACTAGACTAGCTCGTT 59.865 47.826 9.52 0.00 0.00 3.85
219 220 2.701951 AGCCTCTACTAGACTAGCTCGT 59.298 50.000 9.52 0.00 0.00 4.18
220 221 3.396260 AGCCTCTACTAGACTAGCTCG 57.604 52.381 9.52 0.00 0.00 5.03
221 222 5.861727 AGTAAGCCTCTACTAGACTAGCTC 58.138 45.833 9.52 0.00 30.13 4.09
222 223 5.899631 AGTAAGCCTCTACTAGACTAGCT 57.100 43.478 9.52 0.00 30.13 3.32
229 230 5.065235 GTGTCCCTAGTAAGCCTCTACTAG 58.935 50.000 14.24 14.24 45.92 2.57
230 231 4.725810 AGTGTCCCTAGTAAGCCTCTACTA 59.274 45.833 0.00 0.00 34.03 1.82
231 232 3.528491 AGTGTCCCTAGTAAGCCTCTACT 59.472 47.826 0.00 0.00 36.16 2.57
232 233 3.633065 CAGTGTCCCTAGTAAGCCTCTAC 59.367 52.174 0.00 0.00 0.00 2.59
233 234 3.268856 ACAGTGTCCCTAGTAAGCCTCTA 59.731 47.826 0.00 0.00 0.00 2.43
234 235 2.043252 ACAGTGTCCCTAGTAAGCCTCT 59.957 50.000 0.00 0.00 0.00 3.69
235 236 2.166664 CACAGTGTCCCTAGTAAGCCTC 59.833 54.545 0.00 0.00 0.00 4.70
236 237 2.180276 CACAGTGTCCCTAGTAAGCCT 58.820 52.381 0.00 0.00 0.00 4.58
237 238 1.900486 ACACAGTGTCCCTAGTAAGCC 59.100 52.381 0.00 0.00 0.00 4.35
238 239 3.679824 AACACAGTGTCCCTAGTAAGC 57.320 47.619 6.67 0.00 0.00 3.09
239 240 5.365619 ACAAAACACAGTGTCCCTAGTAAG 58.634 41.667 6.67 0.00 0.00 2.34
240 241 5.129815 AGACAAAACACAGTGTCCCTAGTAA 59.870 40.000 6.67 0.00 44.30 2.24
241 242 4.652421 AGACAAAACACAGTGTCCCTAGTA 59.348 41.667 6.67 0.00 44.30 1.82
242 243 3.454812 AGACAAAACACAGTGTCCCTAGT 59.545 43.478 6.67 1.94 44.30 2.57
243 244 4.073293 AGACAAAACACAGTGTCCCTAG 57.927 45.455 6.67 0.00 44.30 3.02
244 245 5.071250 ACATAGACAAAACACAGTGTCCCTA 59.929 40.000 6.67 5.04 44.30 3.53
245 246 4.141482 ACATAGACAAAACACAGTGTCCCT 60.141 41.667 6.67 3.00 44.30 4.20
246 247 4.134563 ACATAGACAAAACACAGTGTCCC 58.865 43.478 6.67 0.00 44.30 4.46
247 248 6.092259 GGATACATAGACAAAACACAGTGTCC 59.908 42.308 6.67 0.00 44.30 4.02
248 249 6.649141 TGGATACATAGACAAAACACAGTGTC 59.351 38.462 6.67 0.00 46.17 3.67
249 250 6.530120 TGGATACATAGACAAAACACAGTGT 58.470 36.000 0.00 0.00 46.17 3.55
267 268 6.238103 CGGAAACTTGATACATGTGTGGATAC 60.238 42.308 9.11 0.00 0.00 2.24
268 269 5.815222 CGGAAACTTGATACATGTGTGGATA 59.185 40.000 9.11 0.00 0.00 2.59
269 270 4.635765 CGGAAACTTGATACATGTGTGGAT 59.364 41.667 9.11 0.00 0.00 3.41
270 271 4.000325 CGGAAACTTGATACATGTGTGGA 59.000 43.478 9.11 0.00 0.00 4.02
271 272 4.000325 TCGGAAACTTGATACATGTGTGG 59.000 43.478 9.11 0.00 0.00 4.17
272 273 5.801350 ATCGGAAACTTGATACATGTGTG 57.199 39.130 9.11 0.00 0.00 3.82
273 274 7.915293 TTAATCGGAAACTTGATACATGTGT 57.085 32.000 9.11 0.10 0.00 3.72
274 275 9.864034 GTATTAATCGGAAACTTGATACATGTG 57.136 33.333 9.11 0.00 0.00 3.21
275 276 9.607988 TGTATTAATCGGAAACTTGATACATGT 57.392 29.630 2.69 2.69 32.28 3.21
283 284 9.651718 GCTAGAATTGTATTAATCGGAAACTTG 57.348 33.333 0.00 0.00 0.00 3.16
284 285 9.391006 TGCTAGAATTGTATTAATCGGAAACTT 57.609 29.630 0.00 0.00 0.00 2.66
285 286 8.958119 TGCTAGAATTGTATTAATCGGAAACT 57.042 30.769 0.00 0.00 0.00 2.66
286 287 9.599322 CATGCTAGAATTGTATTAATCGGAAAC 57.401 33.333 0.00 0.00 0.00 2.78
287 288 9.554395 TCATGCTAGAATTGTATTAATCGGAAA 57.446 29.630 0.00 0.00 0.00 3.13
288 289 9.554395 TTCATGCTAGAATTGTATTAATCGGAA 57.446 29.630 0.00 0.00 0.00 4.30
289 290 9.725019 ATTCATGCTAGAATTGTATTAATCGGA 57.275 29.630 0.00 0.00 34.70 4.55
353 354 5.565455 AATGGGAAAACATGTCCAATGTT 57.435 34.783 7.97 0.00 43.35 2.71
354 355 5.565455 AAATGGGAAAACATGTCCAATGT 57.435 34.783 7.97 0.00 36.83 2.71
355 356 5.335035 GCAAAATGGGAAAACATGTCCAATG 60.335 40.000 7.97 8.67 36.83 2.82
356 357 4.761227 GCAAAATGGGAAAACATGTCCAAT 59.239 37.500 7.97 0.00 36.83 3.16
357 358 4.133078 GCAAAATGGGAAAACATGTCCAA 58.867 39.130 7.97 0.00 36.83 3.53
358 359 3.390639 AGCAAAATGGGAAAACATGTCCA 59.609 39.130 6.47 6.47 36.83 4.02
359 360 4.006780 AGCAAAATGGGAAAACATGTCC 57.993 40.909 0.00 0.00 0.00 4.02
360 361 6.147656 CCTTAAGCAAAATGGGAAAACATGTC 59.852 38.462 0.00 0.00 0.00 3.06
361 362 5.997129 CCTTAAGCAAAATGGGAAAACATGT 59.003 36.000 0.00 0.00 0.00 3.21
362 363 5.997129 ACCTTAAGCAAAATGGGAAAACATG 59.003 36.000 0.00 0.00 0.00 3.21
363 364 6.186420 ACCTTAAGCAAAATGGGAAAACAT 57.814 33.333 0.00 0.00 0.00 2.71
364 365 5.622346 ACCTTAAGCAAAATGGGAAAACA 57.378 34.783 0.00 0.00 0.00 2.83
388 389 8.464404 GCGCGACCCATATTCCTTATATATATA 58.536 37.037 12.10 0.00 0.00 0.86
389 390 7.178628 AGCGCGACCCATATTCCTTATATATAT 59.821 37.037 12.10 0.00 0.00 0.86
390 391 6.492429 AGCGCGACCCATATTCCTTATATATA 59.508 38.462 12.10 0.00 0.00 0.86
391 392 5.304614 AGCGCGACCCATATTCCTTATATAT 59.695 40.000 12.10 0.00 0.00 0.86
392 393 4.647853 AGCGCGACCCATATTCCTTATATA 59.352 41.667 12.10 0.00 0.00 0.86
393 394 3.451178 AGCGCGACCCATATTCCTTATAT 59.549 43.478 12.10 0.00 0.00 0.86
394 395 2.829720 AGCGCGACCCATATTCCTTATA 59.170 45.455 12.10 0.00 0.00 0.98
395 396 1.623811 AGCGCGACCCATATTCCTTAT 59.376 47.619 12.10 0.00 0.00 1.73
396 397 1.045407 AGCGCGACCCATATTCCTTA 58.955 50.000 12.10 0.00 0.00 2.69
397 398 1.045407 TAGCGCGACCCATATTCCTT 58.955 50.000 12.10 0.00 0.00 3.36
398 399 1.267121 ATAGCGCGACCCATATTCCT 58.733 50.000 12.10 0.00 0.00 3.36
399 400 2.000447 GAATAGCGCGACCCATATTCC 59.000 52.381 12.10 0.00 31.40 3.01
400 401 1.654105 CGAATAGCGCGACCCATATTC 59.346 52.381 12.10 13.20 33.33 1.75
401 402 1.000506 ACGAATAGCGCGACCCATATT 59.999 47.619 12.10 5.48 46.04 1.28
402 403 0.601558 ACGAATAGCGCGACCCATAT 59.398 50.000 12.10 0.00 46.04 1.78
403 404 0.039798 GACGAATAGCGCGACCCATA 60.040 55.000 12.10 0.00 46.04 2.74
404 405 1.299926 GACGAATAGCGCGACCCAT 60.300 57.895 12.10 0.00 46.04 4.00
405 406 2.103538 GACGAATAGCGCGACCCA 59.896 61.111 12.10 0.00 46.04 4.51
406 407 2.103538 TGACGAATAGCGCGACCC 59.896 61.111 12.10 0.00 46.04 4.46
407 408 2.228914 GGTGACGAATAGCGCGACC 61.229 63.158 12.10 0.00 46.04 4.79
408 409 2.228914 GGGTGACGAATAGCGCGAC 61.229 63.158 12.10 0.04 46.04 5.19
409 410 2.103538 GGGTGACGAATAGCGCGA 59.896 61.111 12.10 0.00 46.04 5.87
410 411 2.104331 AGGGTGACGAATAGCGCG 59.896 61.111 0.00 0.00 46.04 6.86
411 412 1.883084 CCAGGGTGACGAATAGCGC 60.883 63.158 0.00 0.00 46.04 5.92
412 413 1.956629 ACCCAGGGTGACGAATAGCG 61.957 60.000 11.70 0.00 39.57 4.26
413 414 1.905512 ACCCAGGGTGACGAATAGC 59.094 57.895 11.70 0.00 32.98 2.97
420 421 9.736671 GAATAACTATTCCTCACCCAGGGTGAC 62.737 48.148 34.62 17.53 44.45 3.67
421 422 7.827072 GAATAACTATTCCTCACCCAGGGTGA 61.827 46.154 35.32 35.32 45.54 4.02
422 423 5.687706 GAATAACTATTCCTCACCCAGGGTG 60.688 48.000 31.06 31.06 43.50 4.61
423 424 2.361085 AACTATTCCTCACCCAGGGT 57.639 50.000 4.76 4.76 43.67 4.34
424 425 4.660771 AGAATAACTATTCCTCACCCAGGG 59.339 45.833 2.85 2.85 43.67 4.45
425 426 5.366768 TGAGAATAACTATTCCTCACCCAGG 59.633 44.000 5.95 0.00 42.29 4.45
426 427 6.485830 TGAGAATAACTATTCCTCACCCAG 57.514 41.667 5.95 0.00 42.29 4.45
427 428 6.043243 GGATGAGAATAACTATTCCTCACCCA 59.957 42.308 12.71 0.00 42.29 4.51
428 429 6.468543 GGATGAGAATAACTATTCCTCACCC 58.531 44.000 5.95 6.32 42.29 4.61
429 430 6.468543 GGGATGAGAATAACTATTCCTCACC 58.531 44.000 5.95 10.86 42.29 4.02
430 431 6.271159 AGGGGATGAGAATAACTATTCCTCAC 59.729 42.308 5.95 3.12 42.29 3.51
431 432 6.393897 AGGGGATGAGAATAACTATTCCTCA 58.606 40.000 5.95 8.94 42.29 3.86
432 433 6.728632 AGAGGGGATGAGAATAACTATTCCTC 59.271 42.308 5.95 0.00 42.29 3.71
433 434 6.638953 AGAGGGGATGAGAATAACTATTCCT 58.361 40.000 5.95 0.00 42.29 3.36
434 435 6.943899 AGAGGGGATGAGAATAACTATTCC 57.056 41.667 5.95 0.00 42.29 3.01
439 440 9.413734 CAAAATAAAGAGGGGATGAGAATAACT 57.586 33.333 0.00 0.00 0.00 2.24
440 441 9.408648 TCAAAATAAAGAGGGGATGAGAATAAC 57.591 33.333 0.00 0.00 0.00 1.89
441 442 9.408648 GTCAAAATAAAGAGGGGATGAGAATAA 57.591 33.333 0.00 0.00 0.00 1.40
442 443 8.556589 TGTCAAAATAAAGAGGGGATGAGAATA 58.443 33.333 0.00 0.00 0.00 1.75
443 444 7.413446 TGTCAAAATAAAGAGGGGATGAGAAT 58.587 34.615 0.00 0.00 0.00 2.40
444 445 6.789268 TGTCAAAATAAAGAGGGGATGAGAA 58.211 36.000 0.00 0.00 0.00 2.87
445 446 6.387192 TGTCAAAATAAAGAGGGGATGAGA 57.613 37.500 0.00 0.00 0.00 3.27
446 447 6.830324 TGATGTCAAAATAAAGAGGGGATGAG 59.170 38.462 0.00 0.00 0.00 2.90
447 448 6.730447 TGATGTCAAAATAAAGAGGGGATGA 58.270 36.000 0.00 0.00 0.00 2.92
448 449 7.408756 TTGATGTCAAAATAAAGAGGGGATG 57.591 36.000 0.00 0.00 32.11 3.51
449 450 7.418254 GCATTGATGTCAAAATAAAGAGGGGAT 60.418 37.037 0.00 0.00 39.55 3.85
450 451 6.127366 GCATTGATGTCAAAATAAAGAGGGGA 60.127 38.462 0.00 0.00 39.55 4.81
451 452 6.044682 GCATTGATGTCAAAATAAAGAGGGG 58.955 40.000 0.00 0.00 39.55 4.79
452 453 6.532657 GTGCATTGATGTCAAAATAAAGAGGG 59.467 38.462 0.00 0.00 39.55 4.30
453 454 6.532657 GGTGCATTGATGTCAAAATAAAGAGG 59.467 38.462 0.00 0.00 39.55 3.69
454 455 6.252015 CGGTGCATTGATGTCAAAATAAAGAG 59.748 38.462 0.00 0.00 39.55 2.85
455 456 6.092092 CGGTGCATTGATGTCAAAATAAAGA 58.908 36.000 0.00 0.00 39.55 2.52
456 457 5.863397 ACGGTGCATTGATGTCAAAATAAAG 59.137 36.000 0.00 0.00 39.55 1.85
457 458 5.777802 ACGGTGCATTGATGTCAAAATAAA 58.222 33.333 0.00 0.00 39.55 1.40
458 459 5.384063 ACGGTGCATTGATGTCAAAATAA 57.616 34.783 0.00 0.00 39.55 1.40
459 460 6.691754 ATACGGTGCATTGATGTCAAAATA 57.308 33.333 0.00 0.00 39.55 1.40
460 461 3.940209 ACGGTGCATTGATGTCAAAAT 57.060 38.095 0.00 0.00 39.55 1.82
461 462 5.384063 AATACGGTGCATTGATGTCAAAA 57.616 34.783 0.00 0.00 39.55 2.44
462 463 5.384063 AAATACGGTGCATTGATGTCAAA 57.616 34.783 0.00 0.00 39.55 2.69
463 464 5.384063 AAAATACGGTGCATTGATGTCAA 57.616 34.783 0.00 0.00 40.51 3.18
464 465 5.384063 AAAAATACGGTGCATTGATGTCA 57.616 34.783 0.00 0.00 0.00 3.58
465 466 5.451023 CGTAAAAATACGGTGCATTGATGTC 59.549 40.000 0.00 0.00 39.56 3.06
466 467 5.106475 ACGTAAAAATACGGTGCATTGATGT 60.106 36.000 12.37 0.00 46.68 3.06
467 468 5.328691 ACGTAAAAATACGGTGCATTGATG 58.671 37.500 12.37 0.00 46.68 3.07
468 469 5.554822 ACGTAAAAATACGGTGCATTGAT 57.445 34.783 12.37 0.00 46.68 2.57
469 470 5.359716 AACGTAAAAATACGGTGCATTGA 57.640 34.783 12.37 0.00 46.68 2.57
470 471 5.219695 CGAAACGTAAAAATACGGTGCATTG 60.220 40.000 12.37 0.00 43.24 2.82
471 472 4.847217 CGAAACGTAAAAATACGGTGCATT 59.153 37.500 12.37 0.95 43.24 3.56
472 473 4.083908 ACGAAACGTAAAAATACGGTGCAT 60.084 37.500 12.37 0.00 43.24 3.96
473 474 3.247173 ACGAAACGTAAAAATACGGTGCA 59.753 39.130 12.37 0.00 43.24 4.57
474 475 3.797909 ACGAAACGTAAAAATACGGTGC 58.202 40.909 12.37 4.03 43.24 5.01
487 488 9.719279 TGAAATAAGACAAAATTTACGAAACGT 57.281 25.926 1.91 1.91 44.35 3.99
523 524 9.570488 GTGAGTACATATTTTCTTACGTTCTCT 57.430 33.333 0.00 0.00 0.00 3.10
524 525 8.805688 GGTGAGTACATATTTTCTTACGTTCTC 58.194 37.037 0.00 0.00 0.00 2.87
525 526 7.487189 CGGTGAGTACATATTTTCTTACGTTCT 59.513 37.037 0.00 0.00 0.00 3.01
526 527 7.274250 ACGGTGAGTACATATTTTCTTACGTTC 59.726 37.037 0.00 0.00 0.00 3.95
527 528 7.092716 ACGGTGAGTACATATTTTCTTACGTT 58.907 34.615 0.00 0.00 0.00 3.99
528 529 6.624423 ACGGTGAGTACATATTTTCTTACGT 58.376 36.000 0.00 0.00 0.00 3.57
529 530 8.619146 TTACGGTGAGTACATATTTTCTTACG 57.381 34.615 0.00 0.00 34.56 3.18
533 534 9.715121 TCTTTTTACGGTGAGTACATATTTTCT 57.285 29.630 0.00 0.00 34.56 2.52
540 541 9.444600 AACATAATCTTTTTACGGTGAGTACAT 57.555 29.630 0.00 0.00 34.56 2.29
541 542 8.836268 AACATAATCTTTTTACGGTGAGTACA 57.164 30.769 0.00 0.00 34.56 2.90
543 544 9.075519 CGTAACATAATCTTTTTACGGTGAGTA 57.924 33.333 5.11 0.00 41.85 2.59
544 545 7.599998 ACGTAACATAATCTTTTTACGGTGAGT 59.400 33.333 14.96 0.00 47.00 3.41
545 546 7.956558 ACGTAACATAATCTTTTTACGGTGAG 58.043 34.615 14.96 0.00 47.00 3.51
546 547 7.887996 ACGTAACATAATCTTTTTACGGTGA 57.112 32.000 14.96 0.00 47.00 4.02
690 691 9.797556 GCTTCCCAAATAAATTACGTTTAGAAT 57.202 29.630 0.00 0.00 35.83 2.40
691 692 7.964011 CGCTTCCCAAATAAATTACGTTTAGAA 59.036 33.333 0.00 0.00 35.83 2.10
692 693 7.333921 TCGCTTCCCAAATAAATTACGTTTAGA 59.666 33.333 0.00 0.00 35.83 2.10
693 694 7.465989 TCGCTTCCCAAATAAATTACGTTTAG 58.534 34.615 0.00 0.00 35.83 1.85
694 695 7.375106 TCGCTTCCCAAATAAATTACGTTTA 57.625 32.000 0.00 0.00 36.75 2.01
695 696 6.256912 TCGCTTCCCAAATAAATTACGTTT 57.743 33.333 0.00 0.00 0.00 3.60
696 697 5.883503 TCGCTTCCCAAATAAATTACGTT 57.116 34.783 0.00 0.00 0.00 3.99
697 698 5.277154 CGATCGCTTCCCAAATAAATTACGT 60.277 40.000 0.26 0.00 0.00 3.57
698 699 5.137403 CGATCGCTTCCCAAATAAATTACG 58.863 41.667 0.26 0.00 0.00 3.18
699 700 6.056428 ACGATCGCTTCCCAAATAAATTAC 57.944 37.500 16.60 0.00 0.00 1.89
700 701 7.711772 TCTTACGATCGCTTCCCAAATAAATTA 59.288 33.333 16.60 0.00 0.00 1.40
701 702 6.540914 TCTTACGATCGCTTCCCAAATAAATT 59.459 34.615 16.60 0.00 0.00 1.82
702 703 6.053005 TCTTACGATCGCTTCCCAAATAAAT 58.947 36.000 16.60 0.00 0.00 1.40
703 704 5.421277 TCTTACGATCGCTTCCCAAATAAA 58.579 37.500 16.60 0.00 0.00 1.40
704 705 5.013568 TCTTACGATCGCTTCCCAAATAA 57.986 39.130 16.60 2.01 0.00 1.40
705 706 4.659111 TCTTACGATCGCTTCCCAAATA 57.341 40.909 16.60 0.00 0.00 1.40
706 707 3.536956 TCTTACGATCGCTTCCCAAAT 57.463 42.857 16.60 0.00 0.00 2.32
707 708 3.536956 ATCTTACGATCGCTTCCCAAA 57.463 42.857 16.60 0.00 0.00 3.28
708 709 3.536956 AATCTTACGATCGCTTCCCAA 57.463 42.857 16.60 0.00 0.00 4.12
709 710 3.635373 AGTAATCTTACGATCGCTTCCCA 59.365 43.478 16.60 0.00 38.65 4.37
710 711 4.240175 AGTAATCTTACGATCGCTTCCC 57.760 45.455 16.60 0.00 38.65 3.97
711 712 4.379204 CGAAGTAATCTTACGATCGCTTCC 59.621 45.833 16.60 2.10 39.26 3.46
712 713 4.379204 CCGAAGTAATCTTACGATCGCTTC 59.621 45.833 16.60 15.04 41.78 3.86
713 714 4.288531 CCGAAGTAATCTTACGATCGCTT 58.711 43.478 16.60 7.55 41.78 4.68
714 715 3.304525 CCCGAAGTAATCTTACGATCGCT 60.305 47.826 16.60 5.20 41.78 4.93
715 716 2.978489 CCCGAAGTAATCTTACGATCGC 59.022 50.000 16.60 0.00 41.78 4.58
716 717 3.973135 CACCCGAAGTAATCTTACGATCG 59.027 47.826 14.88 14.88 42.26 3.69
717 718 5.179045 TCACCCGAAGTAATCTTACGATC 57.821 43.478 0.00 0.00 38.65 3.69
718 719 5.587388 TTCACCCGAAGTAATCTTACGAT 57.413 39.130 0.00 0.00 38.65 3.73
719 720 4.990257 CTTCACCCGAAGTAATCTTACGA 58.010 43.478 0.00 0.00 43.20 3.43
739 740 9.397480 ACCCAGGGTGCAGAATAAGTTATTCTT 62.397 40.741 28.07 14.74 42.47 2.52
740 741 8.008283 ACCCAGGGTGCAGAATAAGTTATTCT 62.008 42.308 25.91 25.91 44.21 2.40
741 742 4.580580 CCCAGGGTGCAGAATAAGTTATTC 59.419 45.833 22.80 22.80 43.77 1.75
742 743 4.017499 ACCCAGGGTGCAGAATAAGTTATT 60.017 41.667 11.70 7.87 32.98 1.40
743 744 3.527665 ACCCAGGGTGCAGAATAAGTTAT 59.472 43.478 11.70 0.00 32.98 1.89
744 745 2.916934 ACCCAGGGTGCAGAATAAGTTA 59.083 45.455 11.70 0.00 32.98 2.24
745 746 1.710809 ACCCAGGGTGCAGAATAAGTT 59.289 47.619 11.70 0.00 32.98 2.66
746 747 1.372501 ACCCAGGGTGCAGAATAAGT 58.627 50.000 11.70 0.00 32.98 2.24
1174 1183 1.899814 AGTGATAGCGGAAACTGGACA 59.100 47.619 0.00 0.00 0.00 4.02
1334 1343 4.652679 AAAGGAGGTAAAGATTTCGGGT 57.347 40.909 0.00 0.00 0.00 5.28
1468 1477 0.865769 GCCACTAGACAACCAACACG 59.134 55.000 0.00 0.00 0.00 4.49
1499 1508 2.252346 GCATCGCTCCAGCTCCATG 61.252 63.158 0.00 0.00 39.32 3.66
1563 1572 2.405892 AATCAAACACGAGCTTGTGC 57.594 45.000 30.31 0.00 43.74 4.57
1646 1655 6.976934 TCAAAGCCTTCTTTTAAAGGTGAT 57.023 33.333 4.77 0.00 46.38 3.06
1648 1657 7.041848 CCAAATCAAAGCCTTCTTTTAAAGGTG 60.042 37.037 4.77 0.00 46.38 4.00
1766 1775 9.553064 AGAGTTTGGTATATTCTCATCATGAAC 57.447 33.333 0.00 0.00 0.00 3.18
1782 1791 7.387948 GCAGAGATTGTTTCTTAGAGTTTGGTA 59.612 37.037 0.00 0.00 33.74 3.25
2017 2027 4.371624 TGTGATTCTGGAGTTTGTGGAT 57.628 40.909 0.00 0.00 0.00 3.41
2143 2154 7.718334 TGTTCTGATACATCTCCTTTACTCA 57.282 36.000 0.00 0.00 0.00 3.41
2468 2479 7.038088 ACAATTCCAGGAAGCCAATATTCTTTT 60.038 33.333 8.20 0.00 0.00 2.27
2499 2510 7.607250 AGTATCTCAAACAACCTTCTGTAGAG 58.393 38.462 0.00 0.00 34.95 2.43
2534 2545 9.764363 GAACCATAAAGAGAGTTGGAAAATTTT 57.236 29.630 2.28 2.28 33.36 1.82
2578 3477 0.894835 TGCAATAGTCAGCGTGAGGA 59.105 50.000 0.00 0.00 0.00 3.71
2579 3478 1.945387 ATGCAATAGTCAGCGTGAGG 58.055 50.000 0.00 0.00 0.00 3.86
2614 3513 3.255149 GGCCCATAAGATGCTCATTTCTG 59.745 47.826 0.00 0.00 0.00 3.02
2717 3616 7.726216 TGAGATCAGATAACGGTCATGTTATT 58.274 34.615 0.00 0.00 43.28 1.40
2798 3697 5.580022 AGTTAGTGGATATTTTGGGTGCTT 58.420 37.500 0.00 0.00 0.00 3.91
2812 3711 4.074259 TGCGTTGAGTACTAGTTAGTGGA 58.926 43.478 0.00 0.00 37.10 4.02
2822 3721 3.678056 TCTCCAAATGCGTTGAGTACT 57.322 42.857 0.00 0.00 39.87 2.73
2845 3744 3.133691 ACATTATACATGCACGCTCAGG 58.866 45.455 0.00 0.00 0.00 3.86
2846 3745 4.801147 AACATTATACATGCACGCTCAG 57.199 40.909 0.00 0.00 0.00 3.35
2847 3746 4.509970 GGTAACATTATACATGCACGCTCA 59.490 41.667 0.00 0.00 0.00 4.26
2848 3747 4.509970 TGGTAACATTATACATGCACGCTC 59.490 41.667 0.00 0.00 46.17 5.03
2849 3748 4.447290 TGGTAACATTATACATGCACGCT 58.553 39.130 0.00 0.00 46.17 5.07
2880 3779 4.955925 AAACAGAACGACAAATGTGACA 57.044 36.364 0.00 0.00 0.00 3.58
2881 3780 5.328691 TCAAAACAGAACGACAAATGTGAC 58.671 37.500 0.00 0.00 0.00 3.67
2894 3793 5.010112 TGACACCAACAGTTTCAAAACAGAA 59.990 36.000 8.23 0.00 41.30 3.02
2942 3841 5.685068 CACATAAATTTCGTGCAACAACAGA 59.315 36.000 7.50 0.00 35.74 3.41
3007 3906 4.024048 CACCATCAGTTTAAAACAGAGCGT 60.024 41.667 0.00 0.00 30.16 5.07
3025 3925 2.224992 TGCCAATACCACTTGACACCAT 60.225 45.455 0.00 0.00 0.00 3.55
3059 3959 6.857964 CAGCACATAAATTTCGTGAAAGAACT 59.142 34.615 19.60 7.31 33.32 3.01
3066 3966 2.816672 TGGCAGCACATAAATTTCGTGA 59.183 40.909 19.60 1.50 32.23 4.35
3089 3989 9.507329 TTGTCAAATCTTAATAAGCAGAAGACT 57.493 29.630 0.00 0.00 32.25 3.24
3123 4023 3.375299 GCACAATTTGGTCGAGATAAGCT 59.625 43.478 0.78 0.00 0.00 3.74
3124 4024 3.126858 TGCACAATTTGGTCGAGATAAGC 59.873 43.478 0.78 0.00 0.00 3.09
3129 4029 1.960417 TGTGCACAATTTGGTCGAGA 58.040 45.000 19.28 0.00 0.00 4.04
3133 4033 2.927871 GCTCCATGTGCACAATTTGGTC 60.928 50.000 28.55 20.38 0.00 4.02
3166 4066 1.177401 GTTTTCCCTGTGATCCCAGC 58.823 55.000 0.00 0.00 0.00 4.85
3184 4084 6.295067 GGAAGGTAATTGGCATACACTTTTGT 60.295 38.462 1.11 0.00 40.02 2.83
3197 4097 7.173735 AGTTTTACTTACACGGAAGGTAATTGG 59.826 37.037 0.00 0.00 30.93 3.16
3258 4159 4.497291 TTATCCATTAGTTTCCTGCGGT 57.503 40.909 0.00 0.00 0.00 5.68
3276 4177 7.437713 TGATCTCATCGGGGCTATAAATTAT 57.562 36.000 0.00 0.00 0.00 1.28
3288 4189 3.866651 AGTGAAGTTTGATCTCATCGGG 58.133 45.455 0.00 0.00 0.00 5.14
3322 4223 9.260002 CTAATTTGTCAATTAAACAAACTGCCT 57.740 29.630 16.33 3.07 46.19 4.75
3327 4229 9.255304 TGCCTCTAATTTGTCAATTAAACAAAC 57.745 29.630 16.33 6.75 46.19 2.93
3331 4233 9.476202 AAGTTGCCTCTAATTTGTCAATTAAAC 57.524 29.630 0.00 0.00 34.96 2.01
3358 4260 8.802267 ACTTCTCTCATATCCTTTATGTAGAGC 58.198 37.037 12.36 0.00 33.85 4.09
3530 4479 4.025647 CACAGAAACTTCCGTCTTTCACTC 60.026 45.833 0.00 0.00 0.00 3.51
3542 4491 4.900635 ACATGTTGGACACAGAAACTTC 57.099 40.909 0.00 0.00 39.40 3.01
3668 5251 8.827677 GTTGGCTTCTATGACGAAATAAGTAAT 58.172 33.333 0.00 0.00 0.00 1.89
3675 5258 7.865706 ATTAAGTTGGCTTCTATGACGAAAT 57.134 32.000 0.00 0.00 36.22 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.